Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RES	4855	2022-12-11	2019-04-12	4.3	4.30	—	4.2	0.006	0.95	0.0	0.06	15.02	0.01	1.680	8.29	0.41	6.0	93.9	0.1	-5.14	0.64	0.77	—	4.2	0.003	0.69	0.0	0.04	14.38	0.00	1.896	15.39	0.00	5.3	94.6	0.1	-0.94	1.27	0.64	0.77	—	53756	7104	37	0	11	0	0	logfile
✔	6RE9	4846	2022-12-11	2019-04-12	3.9	3.98	3.94	3.9	0.006	0.86	0.0	0.05	14.58	0.01	1.985	5.82	0.21	4.3	95.5	0.2	-4.12	0.61	0.74	1.21	3.9	0.004	0.69	0.0	0.04	16.65	0.00	1.911	14.89	0.60	4.4	95.5	0.1	-0.35	2.26	0.64	0.80	1.05	53720	7099	37	0	11	0	0	logfile
✔	6LN6	0925	2022-12-11	2019-12-28	2.9	3.03	2.87	3.0	0.005	0.64	0.0	0.04	11.98	0.00	2.035	6.60	0.00	2.0	98.0	0.0	-3.94	0.65	0.82	3.55	3.0	0.005	0.62	0.0	0.05	15.68	0.00	2.030	7.36	1.62	2.2	97.8	0.0	0.18	1.33	0.66	0.84	3.42	7836	1010	1	0	4	0	0	logfile
✔	6F1V	4170	2022-12-11	2017-11-23	3.4	4.10	—	3.7	0.014	1.86	0.0	0.09	11.72	0.01	2.246	13.29	0.18	11.1	88.7	0.2	-3.46	0.46	0.69	0.05	3.7	0.003	0.71	0.0	0.04	15.64	0.00	2.200	14.64	0.18	5.9	94.1	0.0	1.12	1.71	0.48	0.75	0.47	5164	628	2	0	0	0	0	logfile
✔	6RDT	4830	2022-12-11	2019-04-12	3.4	3.29	—	3.4	0.011	1.02	1.0	0.06	15.14	0.01	2.058	6.14	0.60	5.7	94.0	0.3	-4.05	0.68	0.83	2.56	3.4	0.002	0.59	0.0	0.04	16.24	0.00	1.975	9.86	0.20	4.1	95.8	0.1	0.25	2.40	0.69	0.85	1.91	53748	7103	37	0	11	0	0	logfile
✔	6RDQ	4827	2022-12-11	2019-04-12	4.0	3.99	—	3.9	0.007	0.94	0.0	0.05	14.97	0.01	1.908	7.03	0.44	5.2	94.6	0.2	-4.22	0.72	0.79	—	3.9	0.004	0.70	0.0	0.04	16.62	0.00	1.865	14.20	0.48	5.6	94.3	0.1	-0.53	0.63	0.72	0.81	—	53748	7103	37	0	11	0	0	logfile
✔	6RDK	4821	2022-12-11	2019-04-12	3.7	3.64	—	3.7	0.006	0.91	0.0	0.06	14.09	0.01	2.103	6.44	0.44	4.9	94.9	0.2	-4.35	0.70	0.82	2.01	3.7	0.003	0.65	0.0	0.04	16.02	0.00	2.005	11.65	0.44	4.2	95.7	0.1	-0.22	1.20	0.70	0.82	1.48	53748	7103	37	0	11	0	0	logfile
✔	6F1Z	4172	2022-12-11	2017-11-23	3.4	4.16	—	3.4	0.004	0.97	0.0	0.06	11.17	0.01	2.264	12.14	0.81	8.6	91.4	0.0	-4.21	0.64	0.68	-1.41	3.4	0.004	1.01	0.0	0.05	16.44	0.01	2.105	24.74	0.81	7.8	92.2	0.0	-1.37	1.33	0.66	0.75	-0.09	2138	265	4	0	0	0	0	logfile
✔	6REF	4852	2022-12-11	2019-04-12	3.3	3.37	3.29	3.3	0.006	0.86	0.0	0.05	14.14	0.01	2.220	5.23	0.14	4.4	95.5	0.1	-3.82	0.68	0.81	2.41	3.3	0.003	0.59	0.0	0.04	15.80	0.00	1.962	9.84	0.20	3.8	96.1	0.1	0.33	1.22	0.70	0.86	2.07	53756	7104	37	0	11	0	0	logfile
✔	6FU8	4319	2022-12-11	2018-02-26	3.2	4.43	2.97	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.003	0.82	0.0	0.04	14.91	0.00	2.261	15.40	0.00	10.0	88.8	1.2	-1.84	3.11	0.23	0.62	-0.89	1364	82	1	0	0	0	711	logfile
✔	6RDL	4822	2022-12-11	2019-04-12	3.7	3.82	3.81	3.8	0.006	0.91	0.0	0.06	14.09	0.01	2.103	6.44	0.44	4.9	94.9	0.2	-4.35	0.65	0.77	1.54	3.8	0.003	0.67	0.0	0.04	16.08	0.00	1.954	12.67	0.41	4.4	95.5	0.1	-0.29	1.27	0.66	0.80	1.12	53748	7103	37	0	11	0	0	logfile
✔	5MS1	3562	2022-12-11	2016-12-29	4.25	4.22	—	4.2	0.014	1.51	0.0	0.07	9.30	0.01	2.413	2.10	0.00	5.5	93.5	1.1	-0.81	0.37	0.76	—	4.2	0.005	0.73	0.0	0.05	13.10	0.00	2.107	11.88	0.00	4.9	95.1	0.0	-0.60	1.53	0.46	0.85	—	4350	556	2	0	0	0	0	logfile
✔	6RE5	4842	2022-12-11	2019-04-12	3.2	3.28	—	3.3	0.010	0.94	0.0	0.06	14.48	0.01	2.163	5.78	0.27	4.8	95.0	0.2	-3.94	0.72	0.85	2.85	3.3	0.002	0.57	0.0	0.04	15.80	0.00	1.956	9.37	0.27	3.3	96.6	0.1	0.37	0.47	0.71	0.86	2.15	53720	7099	37	0	11	0	0	logfile
✔	6SAG	10130	2022-12-11	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.004	0.65	0.0	0.04	15.31	0.01	2.030	3.13	1.19	3.0	97.0	0.0	1.39	0.73	0.59	0.89	6.90	54080	6120	240	120	240	2840	0	logfile
✔	6RDo	4825	2022-12-11	2019-04-12	3.1	3.05	—	3.2	0.011	1.02	0.0	0.06	14.44	0.01	2.023	6.15	0.41	5.2	94.6	0.2	-3.89	0.71	0.84	3.15	3.2	0.004	0.62	0.0	0.04	15.84	0.00	1.882	9.54	0.23	4.4	95.4	0.2	0.20	1.16	0.72	0.86	2.57	53748	7103	37	0	11	0	0	logfile
✔	6WUT	21918	2022-12-11	2020-05-05	3.0	3.08	—	3.1	0.008	0.89	0.0	0.05	13.93	0.01	2.253	3.66	5.79	6.2	93.8	0.0	-4.07	0.70	0.82	3.81	3.1	0.002	0.59	0.0	0.04	15.60	0.00	2.189	5.60	3.90	3.8	96.2	0.0	0.05	4.28	0.68	0.83	3.26	8218	1087	3	0	0	0	0	logfile
✔	6GCS	4384	2022-12-11	2018-04-19	4.32	4.51	—	4.3	0.010	1.35	3.0	0.97	12.10	0.01	2.231	10.19	0.73	13.4	85.9	0.8	-4.79	0.77	0.78	—	4.3	0.009	1.72	0.0	0.30	12.75	0.01	2.061	23.81	0.00	14.0	85.7	0.3	-2.36	0.79	0.78	0.80	—	55137	6864	53	0	667	0	0	logfile
✔	6HS7	0264	2022-12-11	2018-09-28	4.6	3.02	4.27	4.3	0.006	1.00	1.0	0.05	14.59	0.01	2.156	6.43	0.04	10.5	89.5	0.0	-5.02	0.77	0.69	—	4.3	0.003	0.72	0.0	0.04	14.07	0.00	2.125	10.42	0.05	7.9	92.1	0.0	-2.28	0.94	0.79	0.71	—	52890	6905	25	0	0	0	0	logfile
✔	6UWF	20922	2022-12-11	2019-11-05	3.08	3.26	—	3.3	0.008	1.08	0.0	0.05	16.40	0.01	2.294	2.14	0.00	3.1	96.9	0.0	-3.86	0.70	0.85	2.48	3.3	0.003	0.59	0.0	0.04	15.19	0.00	2.243	6.27	0.92	3.1	96.9	0.0	0.94	0.31	0.67	0.85	2.48	3178	417	1	0	2	0	0	logfile
✔	7CFM	30344	2022-12-11	2020-06-27	3.0	3.21	—	3.2	0.006	0.99	0.0	0.06	11.26	0.01	1.988	8.43	0.24	3.0	97.0	0.0	-2.23	0.61	0.78	3.69	3.2	0.003	0.61	0.0	0.04	15.55	0.00	2.109	7.13	1.55	2.7	97.3	0.0	1.25	0.55	0.60	0.79	2.80	8081	1027	5	0	4	1	0	logfile

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