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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8HHo | 34805 | 2023-08-09 | 2022-11-16 | 3.2 | 3.36 | 3.02 | 3.3 | 0.005 | 0.76 | 0.0 | 0.05 | 14.81 | 0.01 | 2.169 | 14.02 | 0.30 | 2.2 | 97.8 | 0.0 | 1.56 | 0.46 | 0.78 | 2.53 | 3.2 | 0.003 | 0.61 | 0.0 | 0.04 | 16.30 | 0.00 | 2.139 | 14.64 | 0.30 | 2.2 | 97.8 | 0.0 | 1.41 | 0.39 | 0.47 | 0.80 | 1.96 | 3274 | 416 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7T4N | 25681 | 2023-08-09 | 2021-12-10 | 2.35 | 2.66 | 2.38 | 2.5 | 0.002 | 0.42 | 0.0 | 0.04 | 16.22 | 0.00 | 2.207 | 4.39 | 1.25 | 1.0 | 99.0 | 0.0 | 0.87 | 0.63 | 0.85 | 3.82 | 2.5 | 0.003 | 0.49 | 0.0 | 0.04 | 16.48 | 0.00 | 2.284 | 5.93 | 1.53 | 1.0 | 99.0 | 0.0 | 1.61 | 0.24 | 0.66 | 0.87 | 3.71 | 6476 | 803 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZDQ | 14666 | 2023-08-09 | 2022-03-29 | 3.2 | 2.77 | 3.10 | 2.9 | 0.003 | 0.56 | 0.0 | 0.04 | 15.22 | 0.00 | 2.212 | 6.47 | 0.15 | 2.3 | 97.7 | 0.0 | 1.48 | 0.71 | 0.81 | 3.08 | 3.1 | 0.002 | 0.48 | 0.0 | 0.04 | 16.22 | 0.00 | 2.230 | 5.65 | 0.15 | 2.5 | 97.5 | 0.0 | 1.61 | 0.27 | 0.71 | 0.83 | 3.05 | 6264 | 763 | 3 | 0 | 3 | 0 | 0 | logfile |
✔ | 6WU0 | 21901 | 2023-08-09 | 2020-05-04 | 3.59 | 3.92 | — | 3.9 | 0.003 | 0.65 | 0.0 | 0.04 | 13.43 | 0.00 | 2.211 | 10.57 | 0.00 | 6.0 | 94.0 | 0.0 | -1.89 | 0.56 | 0.63 | 0.78 | 3.9 | 0.004 | 0.81 | 0.0 | 0.04 | 15.86 | 0.01 | 2.104 | 14.65 | 0.76 | 7.8 | 92.2 | 0.0 | -0.03 | 0.53 | 0.54 | 0.64 | 0.78 | 6340 | 854 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VAB | 21135 | 2023-08-09 | 2019-12-17 | 4.9 | 6.51 | — | 6.8 | 0.005 | 0.91 | 0.0 | 0.06 | 8.70 | 0.01 | 2.264 | 14.98 | 0.00 | 6.8 | 93.2 | 0.0 | -3.84 | 0.71 | 0.69 | — | 6.6 | 0.004 | 0.69 | 0.0 | 0.04 | 4.96 | 0.00 | 2.132 | 7.42 | 0.00 | 8.6 | 91.4 | 0.0 | -0.31 | 2.71 | 0.73 | 0.69 | — | 4642 | 938 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JNA | 22403 | 2023-08-09 | 2020-08-04 | 3.6 | 3.74 | — | 3.8 | 0.005 | 0.72 | 0.0 | 0.05 | 13.48 | 0.03 | 2.215 | 12.10 | 0.00 | 4.3 | 95.7 | 0.0 | -3.83 | 0.63 | 0.71 | 1.86 | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 16.16 | 0.00 | 2.251 | 11.45 | 0.35 | 4.2 | 95.8 | 0.0 | -0.62 | 0.92 | 0.69 | 0.78 | 2.48 | 6432 | 834 | 9 | 0 | 15 | 0 | 0 | logfile |
✔ | 3KTT | 5148 | 2023-08-09 | 2009-11-25 | 4.0 | 2.33 | — | 4.5 | 0.020 | 2.86 | 20.0 | 0.20 | 15.20 | 0.01 | 1.652 | 179.94 | 7.82 | 6.3 | 89.4 | 4.3 | -0.59 | 0.27 | 0.28 | — | 1.6 | 0.005 | 1.21 | 0.0 | 0.05 | 17.07 | 0.01 | 2.016 | 34.63 | 0.49 | 11.5 | 87.3 | 1.2 | -2.51 | 2.08 | 0.31 | 0.43 | — | 3855 | 513 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DA4 | 30622 | 2023-08-09 | 2020-10-14 | 4.24 | 3.75 | — | 4.2 | 0.010 | 1.54 | 0.0 | 0.08 | 17.16 | 0.01 | 2.245 | 79.80 | 0.00 | 50.0 | 50.0 | 0.0 | -8.65 | 0.39 | 0.66 | — | 4.3 | 0.004 | 0.94 | 0.0 | 0.04 | 10.84 | 0.00 | 2.229 | 17.17 | 0.00 | 21.7 | 78.3 | 0.0 | -5.61 | 3.07 | 0.36 | 0.60 | — | 507 | 66 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WYK | 21967 | 2023-08-09 | 2020-05-13 | 4.0 | 4.14 | — | 4.2 | 0.007 | 0.77 | 0.0 | 0.05 | 11.98 | 0.00 | 2.223 | 5.97 | 0.00 | 3.4 | 96.6 | 0.0 | -2.28 | 0.62 | 0.77 | — | 4.2 | 0.004 | 0.86 | 0.0 | 0.05 | 16.17 | 0.00 | 2.173 | 13.51 | 0.31 | 2.9 | 97.1 | 0.0 | 1.58 | 0.85 | 0.62 | 0.78 | — | 3083 | 415 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LQ6 | 23482 | 2023-08-09 | 2021-02-13 | 3.28 | 4.07 | 3.16 | 3.5 | 0.005 | 0.76 | 0.0 | 0.05 | 15.77 | 0.00 | 1.549 | 9.45 | 1.41 | 5.5 | 94.4 | 0.2 | -4.83 | 0.90 | 0.85 | 3.36 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 16.25 | 0.00 | 2.131 | 7.09 | 0.18 | 3.9 | 96.1 | 0.0 | -0.06 | 1.00 | 0.91 | 0.87 | 1.76 | 5267 | 672 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7R1Y | 14243 | 2023-08-09 | 2022-02-03 | 3.0 | 3.01 | 2.95 | 3.0 | 0.002 | 0.52 | 0.0 | 0.04 | 13.13 | 0.00 | 2.252 | 6.47 | 3.44 | 2.9 | 97.1 | 0.0 | 0.36 | 0.72 | 0.71 | 2.29 | 3.0 | 0.003 | 0.61 | 0.0 | 0.04 | 16.45 | 0.00 | 2.104 | 13.37 | 3.13 | 4.0 | 96.0 | 0.0 | 0.97 | 1.13 | 0.74 | 0.74 | 2.05 | 5704 | 723 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7EFD | 31084 | 2023-08-09 | 2021-03-21 | 1.77 | 1.78 | 1.82 | 1.9 | 0.033 | 3.16 | 12.0 | 0.09 | 15.47 | 0.02 | 0.001 | 1.61 | 2.15 | 1.7 | 97.5 | 0.8 | -0.54 | 0.74 | 0.82 | 5.75 | 1.9 | 0.004 | 0.74 | 0.0 | 0.05 | 14.91 | 0.00 | 1.834 | 7.38 | 0.00 | 3.4 | 96.0 | 0.6 | 0.90 | 0.55 | 0.80 | 0.84 | 6.49 | 4004 | 480 | 4 | 0 | 4 | 156 | 0 | logfile |
✔ | 7KX7 | 23061 | 2023-08-09 | 2020-12-03 | 3.8 | 3.89 | 3.70 | 3.8 | 0.006 | 0.78 | 0.0 | 0.05 | 13.43 | 0.02 | 1.953 | 14.05 | 0.17 | 9.4 | 90.6 | 0.0 | -2.63 | 0.83 | 0.83 | 2.98 | 3.8 | 0.004 | 0.75 | 0.0 | 0.04 | 15.34 | 0.01 | 1.954 | 13.18 | 0.34 | 6.5 | 93.5 | 0.0 | -1.78 | 0.38 | 0.83 | 0.82 | 2.72 | 5828 | 729 | 3 | 7 | 2 | 0 | 0 | logfile |
✔ | 7SL8 | 25194 | 2023-08-09 | 2021-10-23 | 3.4 | 3.98 | — | 3.9 | 0.005 | 0.97 | 0.0 | 0.06 | 14.64 | 0.01 | 2.316 | 8.99 | 0.92 | 8.1 | 91.9 | 0.0 | -4.09 | 0.62 | 0.80 | 1.65 | 3.9 | 0.003 | 0.71 | 0.0 | 0.04 | 15.95 | 0.00 | 2.178 | 12.11 | 1.11 | 6.1 | 93.9 | 0.0 | 0.16 | 0.54 | 0.61 | 0.80 | 1.09 | 5295 | 700 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 6X12 | 21986 | 2023-08-09 | 2020-05-18 | 3.52 | 3.69 | — | 3.7 | 0.008 | 1.08 | 0.0 | 0.06 | 15.87 | 0.01 | 2.322 | 3.01 | 0.00 | 2.7 | 97.3 | 0.0 | -5.29 | 0.65 | 0.84 | 1.43 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 15.88 | 0.00 | 2.262 | 7.77 | 0.63 | 2.7 | 97.3 | 0.0 | 0.14 | 1.20 | 0.66 | 0.84 | 1.26 | 3059 | 407 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 8FD5 | 29002 | 2023-08-09 | 2022-12-02 | 4.57 | 4.19 | — | 10.0 | 0.016 | 2.15 | 4.0 | 0.13 | 13.14 | 0.02 | 2.541 | 0.16 | 0.29 | 3.8 | 96.2 | 0.0 | -1.38 | 0.28 | 0.02 | — | 3.5 | 0.004 | 0.81 | 0.0 | 0.04 | 13.27 | 0.01 | 2.112 | 15.37 | 0.00 | 6.2 | 93.8 | 0.0 | -1.75 | 1.59 | 0.40 | 0.17 | — | 3214 | 419 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RQ7 | 24629 | 2023-08-09 | 2021-08-05 | 3.95 | 4.02 | — | 4.0 | 0.005 | 0.95 | 0.0 | 0.05 | 14.60 | 0.01 | 2.353 | 6.68 | 0.31 | 5.8 | 94.2 | 0.0 | -5.29 | 0.66 | 0.80 | 1.53 | 4.0 | 0.004 | 0.86 | 0.0 | 0.04 | 16.78 | 0.00 | 2.211 | 14.98 | 0.94 | 5.8 | 94.2 | 0.0 | -0.33 | 1.20 | 0.68 | 0.81 | 1.02 | 6380 | 861 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DDP | 30653 | 2023-08-09 | 2020-10-29 | 3.4 | 2.88 | — | 3.3 | 0.003 | 0.56 | 0.0 | 0.04 | 14.18 | 0.00 | 2.100 | 8.38 | 0.29 | 2.0 | 98.0 | 0.0 | -1.50 | 0.70 | 0.77 | 2.19 | 3.3 | 0.003 | 0.56 | 0.0 | 0.04 | 16.04 | 0.00 | 2.074 | 9.56 | 0.00 | 1.9 | 98.1 | 0.0 | 0.84 | 0.39 | 0.70 | 0.79 | 2.12 | 6477 | 791 | 4 | 0 | 6 | 0 | 0 | logfile |
✘ | 7ZR8 | 14886 | 2023-08-09 | 2022-05-03 | 3.7 | 3.81 | 3.43 | 3.8 | 0.003 | 0.46 | 0.0 | 0.04 | 8.45 | 0.00 | 2.181 | 7.02 | 0.74 | 3.9 | 96.1 | 0.0 | -0.94 | 0.72 | 0.82 | 2.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3693 | 471 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7XGY | 33189 | 2023-08-09 | 2022-04-07 | 3.5 | 3.46 | 3.56 | 3.3 | 0.008 | 1.16 | 0.0 | 0.06 | 16.48 | 0.01 | 2.307 | 9.06 | 2.17 | 6.4 | 93.6 | 0.0 | -3.05 | 0.78 | 0.73 | 2.38 | 3.4 | 0.003 | 0.79 | 0.0 | 0.05 | 17.73 | 0.01 | 2.045 | 16.90 | 0.22 | 4.2 | 95.8 | 0.0 | 0.64 | 1.14 | 0.78 | 0.72 | 1.10 | 4555 | 574 | 8 | 0 | 4 | 0 | 0 | logfile |