Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HHo	34805	2023-08-09	2022-11-16	3.2	3.36	3.02	3.3	0.005	0.76	0.0	0.05	14.81	0.01	2.169	14.02	0.30	2.2	97.8	0.0	1.56	0.46	0.78	2.53	3.2	0.003	0.61	0.0	0.04	16.30	0.00	2.139	14.64	0.30	2.2	97.8	0.0	1.41	0.39	0.47	0.80	1.96	3274	416	1	0	1	0	0	logfile
✔	7T4N	25681	2023-08-09	2021-12-10	2.35	2.66	2.38	2.5	0.002	0.42	0.0	0.04	16.22	0.00	2.207	4.39	1.25	1.0	99.0	0.0	0.87	0.63	0.85	3.82	2.5	0.003	0.49	0.0	0.04	16.48	0.00	2.284	5.93	1.53	1.0	99.0	0.0	1.61	0.24	0.66	0.87	3.71	6476	803	2	0	0	0	0	logfile
✔	7ZDQ	14666	2023-08-09	2022-03-29	3.2	2.77	3.10	2.9	0.003	0.56	0.0	0.04	15.22	0.00	2.212	6.47	0.15	2.3	97.7	0.0	1.48	0.71	0.81	3.08	3.1	0.002	0.48	0.0	0.04	16.22	0.00	2.230	5.65	0.15	2.5	97.5	0.0	1.61	0.27	0.71	0.83	3.05	6264	763	3	0	3	0	0	logfile
✔	6WU0	21901	2023-08-09	2020-05-04	3.59	3.92	—	3.9	0.003	0.65	0.0	0.04	13.43	0.00	2.211	10.57	0.00	6.0	94.0	0.0	-1.89	0.56	0.63	0.78	3.9	0.004	0.81	0.0	0.04	15.86	0.01	2.104	14.65	0.76	7.8	92.2	0.0	-0.03	0.53	0.54	0.64	0.78	6340	854	1	0	0	0	0	logfile
✔	6VAB	21135	2023-08-09	2019-12-17	4.9	6.51	—	6.8	0.005	0.91	0.0	0.06	8.70	0.01	2.264	14.98	0.00	6.8	93.2	0.0	-3.84	0.71	0.69	—	6.6	0.004	0.69	0.0	0.04	4.96	0.00	2.132	7.42	0.00	8.6	91.4	0.0	-0.31	2.71	0.73	0.69	—	4642	938	4	0	0	0	0	logfile
✔	7JNA	22403	2023-08-09	2020-08-04	3.6	3.74	—	3.8	0.005	0.72	0.0	0.05	13.48	0.03	2.215	12.10	0.00	4.3	95.7	0.0	-3.83	0.63	0.71	1.86	3.8	0.003	0.67	0.0	0.04	16.16	0.00	2.251	11.45	0.35	4.2	95.8	0.0	-0.62	0.92	0.69	0.78	2.48	6432	834	9	0	15	0	0	logfile
✔	3KTT	5148	2023-08-09	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	179.94	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	1.6	0.005	1.21	0.0	0.05	17.07	0.01	2.016	34.63	0.49	11.5	87.3	1.2	-2.51	2.08	0.31	0.43	—	3855	513	1	0	0	0	0	logfile
✔	7DA4	30622	2023-08-09	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	79.80	0.00	50.0	50.0	0.0	-8.65	0.39	0.66	—	4.3	0.004	0.94	0.0	0.04	10.84	0.00	2.229	17.17	0.00	21.7	78.3	0.0	-5.61	3.07	0.36	0.60	—	507	66	3	0	0	0	0	logfile
✔	6WYK	21967	2023-08-09	2020-05-13	4.0	4.14	—	4.2	0.007	0.77	0.0	0.05	11.98	0.00	2.223	5.97	0.00	3.4	96.6	0.0	-2.28	0.62	0.77	—	4.2	0.004	0.86	0.0	0.05	16.17	0.00	2.173	13.51	0.31	2.9	97.1	0.0	1.58	0.85	0.62	0.78	—	3083	415	1	0	0	0	0	logfile
✔	7LQ6	23482	2023-08-09	2021-02-13	3.28	4.07	3.16	3.5	0.005	0.76	0.0	0.05	15.77	0.00	1.549	9.45	1.41	5.5	94.4	0.2	-4.83	0.90	0.85	3.36	3.5	0.003	0.61	0.0	0.04	16.25	0.00	2.131	7.09	0.18	3.9	96.1	0.0	-0.06	1.00	0.91	0.87	1.76	5267	672	1	0	0	0	0	logfile
✔	7R1Y	14243	2023-08-09	2022-02-03	3.0	3.01	2.95	3.0	0.002	0.52	0.0	0.04	13.13	0.00	2.252	6.47	3.44	2.9	97.1	0.0	0.36	0.72	0.71	2.29	3.0	0.003	0.61	0.0	0.04	16.45	0.00	2.104	13.37	3.13	4.0	96.0	0.0	0.97	1.13	0.74	0.74	2.05	5704	723	1	0	0	0	0	logfile
✔	7EFD	31084	2023-08-09	2021-03-21	1.77	1.78	1.82	1.9	0.033	3.16	12.0	0.09	15.47	0.02	0.001	1.61	2.15	1.7	97.5	0.8	-0.54	0.74	0.82	5.75	1.9	0.004	0.74	0.0	0.05	14.91	0.00	1.834	7.38	0.00	3.4	96.0	0.6	0.90	0.55	0.80	0.84	6.49	4004	480	4	0	4	156	0	logfile
✔	7KX7	23061	2023-08-09	2020-12-03	3.8	3.89	3.70	3.8	0.006	0.78	0.0	0.05	13.43	0.02	1.953	14.05	0.17	9.4	90.6	0.0	-2.63	0.83	0.83	2.98	3.8	0.004	0.75	0.0	0.04	15.34	0.01	1.954	13.18	0.34	6.5	93.5	0.0	-1.78	0.38	0.83	0.82	2.72	5828	729	3	7	2	0	0	logfile
✔	7SL8	25194	2023-08-09	2021-10-23	3.4	3.98	—	3.9	0.005	0.97	0.0	0.06	14.64	0.01	2.316	8.99	0.92	8.1	91.9	0.0	-4.09	0.62	0.80	1.65	3.9	0.003	0.71	0.0	0.04	15.95	0.00	2.178	12.11	1.11	6.1	93.9	0.0	0.16	0.54	0.61	0.80	1.09	5295	700	3	0	1	0	0	logfile
✔	6X12	21986	2023-08-09	2020-05-18	3.52	3.69	—	3.7	0.008	1.08	0.0	0.06	15.87	0.01	2.322	3.01	0.00	2.7	97.3	0.0	-5.29	0.65	0.84	1.43	3.7	0.003	0.67	0.0	0.04	15.88	0.00	2.262	7.77	0.63	2.7	97.3	0.0	0.14	1.20	0.66	0.84	1.26	3059	407	1	0	1	0	0	logfile
✔	8FD5	29002	2023-08-09	2022-12-02	4.57	4.19	—	10.0	0.016	2.15	4.0	0.13	13.14	0.02	2.541	0.16	0.29	3.8	96.2	0.0	-1.38	0.28	0.02	—	3.5	0.004	0.81	0.0	0.04	13.27	0.01	2.112	15.37	0.00	6.2	93.8	0.0	-1.75	1.59	0.40	0.17	—	3214	419	1	0	0	0	0	logfile
✔	7RQ7	24629	2023-08-09	2021-08-05	3.95	4.02	—	4.0	0.005	0.95	0.0	0.05	14.60	0.01	2.353	6.68	0.31	5.8	94.2	0.0	-5.29	0.66	0.80	1.53	4.0	0.004	0.86	0.0	0.04	16.78	0.00	2.211	14.98	0.94	5.8	94.2	0.0	-0.33	1.20	0.68	0.81	1.02	6380	861	2	0	0	0	0	logfile
✔	7DDP	30653	2023-08-09	2020-10-29	3.4	2.88	—	3.3	0.003	0.56	0.0	0.04	14.18	0.00	2.100	8.38	0.29	2.0	98.0	0.0	-1.50	0.70	0.77	2.19	3.3	0.003	0.56	0.0	0.04	16.04	0.00	2.074	9.56	0.00	1.9	98.1	0.0	0.84	0.39	0.70	0.79	2.12	6477	791	4	0	6	0	0	logfile
✘	7ZR8	14886	2023-08-09	2022-05-03	3.7	3.81	3.43	3.8	0.003	0.46	0.0	0.04	8.45	0.00	2.181	7.02	0.74	3.9	96.1	0.0	-0.94	0.72	0.82	2.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3693	471	4	0	1	0	0	logfile
✔	7XGY	33189	2023-08-09	2022-04-07	3.5	3.46	3.56	3.3	0.008	1.16	0.0	0.06	16.48	0.01	2.307	9.06	2.17	6.4	93.6	0.0	-3.05	0.78	0.73	2.38	3.4	0.003	0.79	0.0	0.05	17.73	0.01	2.045	16.90	0.22	4.2	95.8	0.0	0.64	1.14	0.78	0.72	1.10	4555	574	8	0	4	0	0	logfile

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