Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JJJ	22354	2022-05-12	2020-07-26	4.5	4.63	4.47	4.5	0.020	1.77	0.0	0.13	9.94	0.01	2.377	1.07	0.07	2.0	98.0	0.0	0.68	0.79	0.80	—	4.5	0.006	0.78	0.0	0.05	12.27	0.00	2.113	15.12	0.00	6.0	94.0	0.0	-0.66	1.45	0.80	0.84	—	54614	6674	92	0	182	0	0	logfile
✔	6XJH	22210	2022-05-12	2020-06-23	3.6	2.83	—	3.6	0.019	1.64	0.0	0.09	11.22	0.01	2.173	3.16	0.48	1.5	98.5	0.0	1.10	0.66	0.74	1.98	3.7	0.003	0.71	0.0	0.04	16.14	0.00	1.955	13.79	0.48	2.6	97.4	0.0	0.90	1.65	0.67	0.75	1.44	7596	940	6	0	4	0	0	logfile
✔	7JVQ	22510	2022-05-12	2020-08-22	3.0	3.32	—	3.3	0.004	0.92	0.0	0.06	8.71	0.01	2.268	4.47	0.00	3.1	96.9	0.0	-2.33	0.61	0.76	2.77	3.3	0.005	0.67	0.0	0.04	14.82	0.00	2.049	7.47	3.00	2.1	97.9	0.0	0.47	1.25	0.59	0.77	2.55	8485	1047	6	0	9	0	0	logfile
✔	7LJC	23390	2022-05-12	2021-01-28	3.0	2.23	—	2.1	0.005	1.00	0.0	0.07	8.58	0.01	2.282	5.42	0.11	2.8	97.2	0.0	-1.06	0.78	0.81	3.11	2.0	0.003	0.63	0.0	0.04	14.85	0.00	2.147	11.14	1.45	2.5	97.5	0.0	0.50	1.23	0.76	0.78	3.06	8544	1040	6	0	14	0	0	logfile
✔	7NRX	12552	2022-05-12	2021-03-04	3.55	3.48	3.32	3.7	0.010	1.20	0.0	0.09	12.76	0.01	2.356	7.71	0.00	8.7	91.3	0.0	-3.60	0.47	0.83	4.85	3.6	0.004	0.68	0.0	0.05	17.26	0.00	2.208	12.15	0.00	6.7	93.3	0.0	-3.21	1.50	0.44	0.81	4.81	5870	770	10	0	0	0	0	logfile
✘	6TM2	10517	2022-05-12	2019-12-03	2.95	3.12	—	3.1	0.008	1.01	0.0	0.06	10.00	0.01	2.181	3.02	0.10	11.3	88.7	0.0	-4.14	0.44	0.47	3.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	55254	7230	60	0	54	138	0	logfile
✔	6ZD0	11172	2022-05-12	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	4.3	0.003	0.74	0.0	0.04	5.33	0.00	2.199	10.22	0.00	19.5	80.1	0.4	-4.32	2.53	0.59	0.57	—	7962	1611	6	0	0	0	0	logfile
✔	7CK6	30382	2022-05-12	2020-07-15	3.4	4.40	—	4.1	0.008	1.14	2.0	0.06	13.48	0.00	1.652	36.32	4.12	6.1	93.1	0.8	0.38	0.57	0.73	0.93	4.1	0.004	1.05	0.0	0.05	16.43	0.01	2.183	16.93	0.62	5.8	94.2	0.0	1.04	3.65	0.58	0.80	1.39	7460	936	11	0	1	0	0	logfile
✔	6Lo8	0935	2022-05-12	2020-01-04	3.83	3.89	—	3.6	0.005	0.87	0.0	0.05	14.88	0.01	2.242	5.11	0.46	3.7	96.1	0.2	-3.08	0.65	0.79	1.72	3.6	0.005	0.90	0.0	0.04	17.08	0.00	2.100	14.45	0.57	5.0	94.9	0.1	1.39	0.92	0.66	0.79	1.60	7972	997	10	0	0	0	0	logfile
✔	7JZ3	22529	2022-05-12	2020-09-01	2.56	2.99	—	3.0	0.003	0.62	0.0	0.05	13.64	0.00	2.211	10.63	1.09	5.8	94.2	0.0	-2.54	0.51	0.62	2.00	2.9	0.008	0.98	0.0	0.05	16.95	0.01	2.004	19.02	6.55	9.6	90.4	0.0	-2.34	1.64	0.47	0.65	1.40	8142	1038	3	0	0	0	0	logfile
✔	7B5S	12050	2022-05-12	2020-12-07	3.6	3.59	3.45	3.6	0.006	0.78	0.0	0.04	15.48	0.01	1.997	11.11	0.24	8.7	91.3	0.0	-0.49	0.73	0.83	2.15	3.6	0.003	0.62	0.0	0.04	17.35	0.00	2.172	10.98	0.60	7.7	92.3	0.0	0.85	0.39	0.73	0.82	1.06	7671	931	5	0	5	0	0	logfile
✔	7KPW	22990	2022-05-12	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.8	0.005	0.86	0.0	0.04	6.91	0.00	2.059	5.41	0.00	14.6	84.8	0.6	-1.66	2.04	0.83	0.83	—	4313	865	1	0	0	0	0	logfile
✔	7BX7	30235	2022-05-12	2020-04-17	2.8	2.94	—	2.9	0.009	0.84	0.0	0.04	12.96	0.00	2.228	15.34	0.00	9.3	90.7	0.0	-5.83	0.40	0.79	6.36	2.9	0.004	0.60	0.0	0.04	13.78	0.00	2.166	11.86	1.72	8.5	91.5	0.0	-5.45	1.13	0.41	0.79	6.15	1896	270	6	0	0	0	0	logfile
✔	6YS8	10893	2022-05-12	2020-04-21	3.9	4.00	3.55	3.9	0.006	1.03	1.0	0.08	15.75	0.02	1.522	10.61	1.70	6.4	91.4	2.2	-3.81	0.65	0.83	1.77	3.9	0.005	0.93	0.0	0.05	17.11	0.00	2.095	16.49	0.85	4.7	94.2	1.1	0.64	0.71	0.66	0.82	0.63	5624	737	7	0	0	0	0	logfile
✔	7DD3	30643	2022-05-12	2020-10-27	3.2	3.57	—	3.6	0.012	1.06	1.0	0.06	11.80	0.01	2.357	4.52	2.31	5.3	94.5	0.1	-3.77	0.65	0.82	3.21	3.6	0.003	0.64	0.0	0.04	14.81	0.00	2.205	8.12	0.46	4.5	95.4	0.1	0.10	0.68	0.61	0.81	1.98	5929	726	3	9	0	0	0	logfile
✔	6ZRR	11383	2022-05-12	2020-07-14	4.0	4.04	3.78	4.3	0.015	1.20	0.0	0.06	13.24	0.00	2.189	28.46	0.00	5.0	95.0	0.0	-4.56	0.62	0.69	—	4.3	0.005	0.78	0.0	0.05	14.68	0.00	2.060	37.04	0.62	26.9	73.1	0.0	-5.23	1.54	0.65	0.76	—	5724	414	18	0	0	0	2664	logfile
✔	7CZB	30508	2022-05-12	2020-09-07	3.8	4.14	—	4.1	0.005	1.12	0.0	0.06	15.72	0.01	2.360	4.78	0.47	12.5	87.5	0.0	-4.95	0.56	0.80	2.30	4.1	0.003	0.91	0.0	0.05	17.03	0.00	2.245	11.15	0.94	10.8	89.2	0.0	-1.60	1.39	0.56	0.80	1.78	6304	776	4	0	0	0	0	logfile
✔	7K1V	22630	2022-05-12	2020-09-08	4.6	4.95	—	4.8	0.008	1.12	0.0	0.06	15.77	0.01	2.159	13.77	0.40	11.0	89.0	0.0	-4.04	0.71	0.71	—	4.8	0.003	0.71	0.0	0.04	14.11	0.01	2.178	18.81	0.00	5.2	94.8	0.0	-1.01	1.44	0.70	0.75	—	4971	626	1	0	0	0	0	logfile
✔	6X0V	21985	2022-05-12	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.46	0.0	0.04	13.09	0.00	2.230	19.17	0.00	6.0	94.0	0.0	2.59	1.22	0.40	0.75	—	1384	211	4	0	0	0	62	logfile
✔	7D3S	30566	2022-05-12	2020-09-20	2.9	2.73	2.75	2.8	0.004	0.64	0.0	0.04	13.88	0.00	2.237	10.42	0.00	4.0	96.0	0.0	-2.28	0.56	0.75	3.07	2.8	0.003	0.54	0.0	0.04	16.91	0.00	2.107	9.76	1.00	3.5	96.5	0.0	0.93	0.48	0.61	0.79	2.59	8338	1048	6	0	0	0	0	logfile

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