Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8iWM	35771	2023-08-09	2023-03-30	3.17	3.65	2.80	3.5	0.004	0.76	0.0	0.04	14.98	0.00	2.390	9.55	5.26	3.4	96.6	0.0	-2.66	0.56	0.76	2.24	3.5	0.002	0.65	0.0	0.04	15.22	0.00	2.254	8.78	1.05	2.2	97.8	0.0	0.48	0.58	0.59	0.77	2.24	1980	271	1	0	1	0	0	logfile
✘	7FiL	31602	2023-08-09	2021-07-31	3.0	2.84	—	3.6	0.008	1.05	2.0	0.06	18.46	0.01	2.213	19.35	8.76	7.7	91.1	1.2	-1.82	0.71	0.75	1.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3993	504	1	0	0	0	0	logfile
✔	7XoM	33352	2023-08-09	2022-05-01	3.2	3.57	3.19	3.2	0.002	0.49	0.0	0.04	13.30	0.00	2.175	10.99	0.02	0.9	99.1	0.0	2.16	0.87	0.86	1.74	3.2	0.004	0.57	0.0	0.04	15.12	0.00	2.120	12.24	0.16	1.2	98.7	0.0	2.04	1.29	0.88	0.88	1.52	54129	7336	15	0	32	0	0	logfile
✔	5TTP	8467	2023-08-09	2016-11-04	4.8	4.88	—	4.5	0.006	1.36	0.0	0.06	11.70	0.01	2.038	24.92	0.00	14.1	85.2	0.7	-5.87	0.61	0.60	—	4.6	0.002	0.77	0.0	0.04	5.16	0.00	2.264	6.32	0.00	13.8	85.9	0.4	0.24	1.81	0.66	0.69	—	5616	1138	2	0	0	0	0	logfile
✔	8C03	16354	2023-08-09	2022-12-15	3.89	4.09	3.71	4.1	0.007	0.86	0.0	0.04	12.87	0.00	1.232	8.74	3.06	2.8	97.2	0.0	2.75	0.56	0.76	1.69	4.1	0.004	0.69	0.0	0.04	16.14	0.00	2.172	14.22	0.56	2.1	97.9	0.0	2.25	1.50	0.56	0.78	1.78	3330	429	1	0	1	0	0	logfile
✔	7YL0	33901	2023-08-09	2022-07-25	3.2	3.47	3.15	3.4	0.016	2.51	0.0	0.11	14.66	0.01	2.515	18.86	0.00	5.0	95.0	0.0	-4.14	0.41	0.74	4.76	3.4	0.006	0.87	0.0	0.05	14.02	0.00	2.101	15.37	0.62	14.7	85.3	0.0	-4.64	1.75	0.44	0.77	4.96	2958	396	12	0	0	0	0	logfile
✔	8iWE	35765	2023-08-09	2023-03-29	3.4	3.95	3.24	3.8	0.004	0.93	1.0	0.07	16.00	0.00	2.321	10.10	2.84	5.9	94.1	0.0	-0.50	0.58	0.79	2.37	3.8	0.002	0.59	0.0	0.04	15.63	0.00	2.185	4.36	1.42	5.5	94.5	0.0	0.49	1.00	0.60	0.84	1.73	2236	296	1	0	1	0	0	logfile
✔	8ERo	28556	2023-08-09	2022-10-12	3.2	3.41	3.03	3.5	0.010	0.86	0.0	0.04	19.23	0.01	2.011	5.62	0.00	8.8	91.2	0.0	0.41	0.54	0.73	2.14	3.5	0.003	0.69	0.0	0.04	17.11	0.01	1.909	8.31	0.16	8.6	91.4	0.0	-0.17	1.20	0.62	0.80	1.79	6154	728	4	0	32	0	0	logfile
✔	6LNi	0931	2023-08-09	2019-12-30	2.702	2.94	—	2.9	0.004	0.55	0.0	0.04	14.81	0.00	2.200	10.98	0.00	12.6	87.4	0.0	-6.05	0.48	0.82	5.95	2.9	0.003	0.67	0.0	0.05	19.43	0.00	2.260	10.36	1.93	11.6	88.4	0.0	-3.97	1.54	0.53	0.87	5.22	4920	600	10	0	0	0	0	logfile
✔	8DVR	27743	2023-08-09	2022-07-29	3.3	3.38	3.19	3.4	0.002	0.46	0.0	0.04	13.62	0.00	2.267	8.74	1.40	4.5	95.5	0.0	-2.25	0.67	0.75	1.81	3.4	0.003	0.59	0.0	0.04	15.74	0.00	2.266	10.10	0.35	6.1	93.9	0.0	0.14	0.57	0.71	0.82	2.11	5601	635	4	21	2	0	0	logfile
✔	7SC7	25028	2023-08-09	2021-09-27	2.8	3.66	—	3.3	0.007	1.08	1.0	0.06	14.67	0.01	2.240	6.50	1.49	2.4	97.6	0.0	-1.25	0.73	0.87	1.85	3.2	0.005	0.99	1.0	0.05	16.95	0.01	1.998	23.67	2.66	3.2	96.8	0.0	0.75	0.70	0.72	0.88	1.52	107930	13756	156	0	72	0	0	logfile
✔	7Y7Z	33675	2023-08-09	2022-06-22	3.2	3.57	3.17	3.5	0.009	1.04	0.0	0.05	15.22	0.01	2.037	11.20	0.00	7.2	92.8	0.0	-0.11	0.59	0.80	1.84	3.5	0.003	0.72	0.0	0.04	15.81	0.00	2.271	6.65	0.22	5.8	94.2	0.0	0.70	0.46	0.62	0.83	1.55	4303	532	1	0	5	0	0	logfile
✔	6SUF	10313	2023-08-09	2019-09-13	3.4	3.32	—	3.3	0.021	1.77	6.0	0.10	10.78	0.01	2.186	1.73	0.00	2.4	97.3	0.3	-0.46	0.80	0.80	2.93	3.3	0.004	0.66	1.0	0.04	14.92	0.00	1.996	10.75	0.15	4.0	96.0	0.0	0.49	1.32	0.82	0.84	2.61	108112	13607	6	0	0	0	0	logfile
✔	7WSN	32761	2023-08-09	2022-01-30	3.31	3.62	—	3.6	0.012	1.40	0.0	0.05	16.46	0.01	2.248	12.89	1.08	5.6	94.4	0.0	-0.44	0.51	0.78	1.65	3.6	0.003	0.77	0.0	0.04	17.40	0.01	2.251	8.09	0.00	3.9	96.1	0.0	1.54	0.53	0.47	0.75	1.57	3567	463	3	0	3	0	0	logfile
✔	7VQ5	32086	2023-08-09	2021-10-19	3.1	3.31	—	3.3	0.009	0.77	0.0	0.05	14.72	0.00	2.110	7.38	0.14	7.4	92.6	0.0	-3.56	0.66	0.84	2.48	3.3	0.003	0.53	0.0	0.04	16.00	0.00	2.132	7.54	0.29	3.5	96.5	0.0	2.12	1.11	0.63	0.83	1.92	6315	800	2	0	1	0	0	logfile
✔	8DVU	27745	2023-08-09	2022-07-29	2.9	3.07	2.86	3.0	0.002	0.51	0.0	0.04	13.39	0.00	2.164	6.25	1.01	6.2	93.8	0.0	-2.23	0.73	0.84	3.49	3.0	0.004	0.57	0.0	0.04	15.42	0.00	2.030	6.08	2.01	7.8	92.2	0.0	0.24	0.42	0.70	0.84	3.74	6170	669	3	36	3	0	0	logfile
✔	7RTV	24690	2023-08-09	2021-08-15	3.96	4.06	—	4.1	0.004	0.76	0.0	0.05	14.21	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.004	0.91	0.0	0.04	16.58	0.00	2.168	18.02	0.32	3.3	96.7	0.0	2.73	1.76	0.41	0.64	0.28	2881	366	3	0	6	0	0	logfile
✔	7QL1	14060	2023-08-09	2021-12-19	3.34	3.41	3.13	3.4	0.011	2.01	0.0	0.10	11.06	0.01	2.654	0.29	0.00	7.5	92.5	0.0	-3.09	0.42	0.83	4.57	3.4	0.007	0.85	0.0	0.05	15.42	0.00	2.104	12.32	0.00	4.2	95.8	0.0	-2.34	1.74	0.39	0.81	4.21	1671	219	3	0	0	0	0	logfile
✘	7Y7W	33672	2023-08-09	2022-06-22	2.4	2.70	2.46	2.7	0.006	0.78	0.0	0.08	17.46	0.00	1.907	5.88	1.11	3.0	97.0	0.0	0.06	0.68	0.85	4.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4310	529	1	0	7	48	0	logfile
✔	6WM0	21846	2023-08-09	2020-04-20	3.52	3.75	—	3.7	0.003	0.59	0.0	0.04	14.11	0.00	2.281	6.43	0.00	2.6	97.4	0.0	-0.89	0.74	0.81	2.63	3.7	0.003	0.61	0.0	0.04	16.06	0.00	2.232	6.79	0.47	2.8	97.2	0.0	3.29	2.36	0.73	0.81	2.04	4105	510	3	0	5	0	0	logfile

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