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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8PV1 | 17950 | 2024-03-03 | 2023-07-17 | 2.56 | 2.49 | — | 2.5 | 0.006 | 0.73 | 1.0 | 0.04 | 21.03 | 0.02 | 2.081 | 3.09 | 0.02 | 1.6 | 98.4 | 0.0 | 0.35 | 0.90 | 0.88 | 4.42 | 2.5 | 0.003 | 0.65 | 0.0 | 0.04 | 21.53 | 0.01 | 1.908 | 6.12 | 1.62 | 1.5 | 98.5 | 0.0 | 1.47 | 1.08 | 0.91 | 0.90 | 4.10 | 157250 | 10512 | 68 | 3435 | 10 | 3 | 0 | logfile |
✔ | 8PV3 | 17952 | 2024-03-03 | 2023-07-17 | 2.8 | 2.83 | — | 2.8 | 0.006 | 0.74 | 0.0 | 0.04 | 20.94 | 0.02 | 2.086 | 3.37 | 0.02 | 1.5 | 98.5 | 0.0 | 0.23 | 0.90 | 0.88 | 4.15 | 2.8 | 0.007 | 0.73 | 0.0 | 0.04 | 21.21 | 0.01 | 1.857 | 6.20 | 1.17 | 2.0 | 98.0 | 0.0 | 1.27 | 0.31 | 0.92 | 0.90 | 3.95 | 155443 | 10501 | 68 | 3355 | 10 | 3 | 0 | logfile |
✔ | 6SSK | 10296 | 2024-03-03 | 2019-09-08 | 3.18 | 3.64 | — | 3.6 | 0.008 | 0.88 | 10.0 | 0.06 | 14.40 | 0.01 | 1.561 | 4.60 | 0.18 | 3.5 | 96.2 | 0.3 | -4.85 | 0.57 | 0.57 | 0.07 | 3.6 | 0.003 | 0.69 | 0.0 | 0.04 | 16.99 | 0.00 | 2.108 | 8.95 | 2.02 | 2.6 | 97.4 | 0.0 | -0.22 | 1.39 | 0.74 | 0.86 | 1.58 | 155900 | 19870 | 90 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Aoi | 11845 | 2024-03-03 | 2020-10-14 | 3.5 | 3.35 | 3.41 | 3.3 | 0.003 | 0.48 | 0.0 | 0.04 | 12.47 | 0.00 | 1.900 | 6.20 | 0.62 | 3.4 | 96.6 | 0.0 | 1.79 | 0.78 | 0.82 | 2.93 | 3.3 | 0.004 | 0.64 | 2.0 | 0.04 | 16.38 | 0.00 | 1.894 | 11.58 | 3.15 | 3.6 | 96.4 | 0.0 | 1.00 | 1.28 | 0.81 | 0.84 | 2.74 | 156070 | 17411 | 90 | 758 | 10 | 0 | 0 | logfile |
✔ | 7NAC | 24269 | 2024-03-03 | 2021-06-21 | 3.04 | 2.78 | 2.99 | 3.0 | 0.004 | 0.58 | 0.0 | 0.04 | 20.82 | 0.01 | 2.159 | 6.61 | 0.12 | 4.3 | 95.7 | 0.0 | -1.15 | 0.63 | 0.80 | 3.29 | 3.0 | 0.003 | 0.55 | 0.0 | 0.04 | 21.21 | 0.00 | 2.101 | 6.79 | 2.00 | 4.3 | 95.7 | 0.0 | 0.41 | 0.31 | 0.64 | 0.82 | 2.92 | 158246 | 12015 | 61 | 2906 | 2 | 0 | 0 | logfile |
✔ | 6FT6 | 4302 | 2024-03-03 | 2018-02-20 | 3.9 | 4.48 | — | 3.8 | 0.012 | 1.22 | 2.0 | 0.06 | 22.08 | 0.01 | 2.033 | 9.32 | 0.48 | 8.7 | 91.0 | 0.3 | -3.96 | 0.87 | 0.88 | 1.41 | 3.8 | 0.003 | 0.69 | 0.0 | 0.04 | 22.24 | 0.00 | 1.864 | 15.92 | 2.53 | 7.2 | 92.7 | 0.2 | -0.77 | 2.03 | 0.87 | 0.88 | 1.03 | 157395 | 10801 | 63 | 3341 | 19 | 0 | 0 | logfile |
✔ | 7ABZ | 11710 | 2024-03-03 | 2020-09-09 | 3.21 | 3.34 | 3.36 | 2.9 | 0.004 | 0.73 | 18.0 | 0.05 | 23.36 | 0.02 | 1.049 | 16.14 | 0.64 | 6.5 | 93.3 | 0.3 | -0.66 | 0.81 | 0.78 | 1.54 | 2.5 | 0.005 | 0.72 | 1.0 | 0.04 | 23.78 | 0.01 | 1.804 | 18.85 | 4.27 | 9.3 | 90.6 | 0.0 | -1.37 | 1.65 | 0.85 | 0.85 | 1.62 | 157227 | 6311 | 66 | 5017 | 194 | 0 | 0 | logfile |
✔ | 7Uoo | 26651 | 2024-03-03 | 2022-04-13 | 2.34 | 2.22 | 2.33 | 2.3 | 0.005 | 0.68 | 0.0 | 0.04 | 20.49 | 0.02 | 1.929 | 3.67 | 0.10 | 2.4 | 97.6 | 0.0 | 0.86 | 0.66 | 0.81 | 4.16 | 2.3 | 0.006 | 0.86 | 0.0 | 0.05 | 21.53 | 0.01 | 1.766 | 5.41 | 2.56 | 3.1 | 96.9 | 0.0 | 0.61 | 0.31 | 0.68 | 0.86 | 4.09 | 157947 | 10806 | 83 | 3329 | 91 | 373 | 0 | logfile |
✔ | 7UQB | 26686 | 2024-03-03 | 2022-04-19 | 2.43 | 2.21 | 2.43 | 2.4 | 0.005 | 0.72 | 0.0 | 0.04 | 20.56 | 0.02 | 1.951 | 4.24 | 0.43 | 2.3 | 97.7 | 0.0 | 0.86 | 0.63 | 0.80 | 4.10 | 2.4 | 0.005 | 0.78 | 0.0 | 0.04 | 21.56 | 0.01 | 1.698 | 5.93 | 2.42 | 2.7 | 97.3 | 0.0 | 0.69 | 0.42 | 0.64 | 0.82 | 3.80 | 157949 | 10806 | 86 | 3330 | 91 | 374 | 0 | logfile |
✔ | 7UQZ | 26703 | 2024-03-03 | 2022-04-20 | 2.44 | 2.24 | 2.43 | 2.3 | 0.005 | 0.65 | 0.0 | 0.04 | 20.22 | 0.02 | 1.953 | 3.65 | 0.33 | 2.3 | 97.7 | 0.0 | 0.96 | 0.61 | 0.81 | 3.96 | 2.4 | 0.005 | 0.78 | 0.0 | 0.04 | 21.60 | 0.01 | 1.617 | 5.89 | 2.59 | 2.8 | 97.2 | 0.0 | 0.52 | 1.92 | 0.64 | 0.84 | 3.88 | 157839 | 10806 | 86 | 3325 | 90 | 373 | 0 | logfile |
✔ | 6WH3 | 21667 | 2024-03-04 | 2020-04-07 | 2.96 | 3.01 | — | 3.0 | 0.011 | 1.09 | 60.0 | 0.08 | 9.53 | 0.01 | 2.204 | 31.34 | 0.68 | 3.9 | 96.1 | 0.0 | -1.75 | 0.74 | 0.87 | 5.56 | 3.0 | 0.005 | 0.67 | 0.0 | 0.05 | 15.98 | 0.00 | 2.080 | 15.46 | 4.61 | 6.0 | 94.0 | 0.0 | -1.26 | 0.60 | 0.71 | 0.89 | 4.69 | 157740 | 20040 | 120 | 0 | 60 | 0 | 0 | logfile |
✔ | 7M3L | 23656 | 2024-03-10 | 2021-03-18 | 3.2 | 4.99 | — | 3.3 | 0.009 | 0.97 | 0.0 | 0.06 | 15.05 | 0.01 | 1.551 | 6.78 | 0.30 | 9.1 | 90.6 | 0.3 | -3.19 | 0.29 | 0.38 | 0.40 | 3.1 | 0.004 | 0.76 | 0.0 | 0.04 | 15.43 | 0.00 | 2.143 | 17.65 | 2.11 | 8.6 | 91.3 | 0.1 | -1.11 | 3.79 | 0.46 | 0.76 | 2.18 | 6113 | 775 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YM8 | 33924 | 2024-03-10 | 2022-07-27 | 2.92 | 3.14 | 2.90 | 3.2 | 0.006 | 0.86 | 0.0 | 0.05 | 16.01 | 0.01 | 2.331 | 4.04 | 0.00 | 4.2 | 95.8 | 0.0 | -3.62 | 0.68 | 0.81 | 3.68 | 3.2 | 0.002 | 0.53 | 0.0 | 0.04 | 16.18 | 0.00 | 2.228 | 6.41 | 1.86 | 3.5 | 96.5 | 0.0 | 0.28 | 0.39 | 0.65 | 0.82 | 3.04 | 4287 | 556 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7Y38 | 33591 | 2024-03-10 | 2022-06-10 | 2.8 | 3.48 | 2.94 | 3.3 | 0.010 | 0.72 | 0.0 | 0.04 | 15.47 | 0.00 | 2.113 | 3.70 | 0.04 | 3.8 | 96.2 | 0.1 | -0.63 | 0.78 | 0.83 | 2.85 | 3.3 | 0.004 | 0.64 | 0.0 | 0.04 | 15.89 | 0.00 | 2.003 | 4.13 | 0.58 | 5.1 | 94.9 | 0.1 | -0.51 | 0.33 | 0.79 | 0.87 | 2.55 | 53135 | 6704 | 27 | 3 | 36 | 0 | 0 | logfile |
✔ | 7M22 | 23629 | 2024-03-10 | 2021-03-15 | 3.65 | 2.59 | 3.89 | 2.3 | 0.004 | 0.83 | 0.0 | 0.05 | 14.15 | 0.01 | 2.168 | 7.64 | 0.61 | 4.1 | 95.9 | 0.0 | -0.78 | 0.72 | 0.73 | 2.84 | 2.3 | 0.005 | 0.79 | 0.0 | 0.05 | 16.53 | 0.01 | 2.101 | 10.99 | 5.92 | 5.3 | 94.7 | 0.0 | -0.92 | 1.22 | 0.72 | 0.74 | 2.50 | 6042 | 748 | 6 | 0 | 3 | 0 | 0 | logfile |
✔ | 8C92 | 16499 | 2024-03-10 | 2023-01-21 | 3.79 | 4.24 | 4.02 | 3.8 | 0.002 | 0.38 | 0.0 | 0.03 | 22.72 | 0.00 | 1.872 | 5.69 | 0.00 | 4.5 | 95.4 | 0.1 | 0.46 | 0.83 | 0.79 | 1.60 | 3.8 | 0.003 | 0.54 | 0.0 | 0.03 | 23.05 | 0.00 | 2.032 | 15.59 | 3.53 | 7.0 | 93.0 | 0.0 | -0.87 | 0.53 | 0.84 | 0.83 | 1.67 | 53489 | 1700 | 17 | 1873 | 0 | 0 | 0 | logfile |
✔ | 6DZZ | 8943 | 2024-03-10 | 2018-07-05 | 3.6 | 4.03 | 4.12 | 4.1 | 0.005 | 0.85 | 0.0 | 0.05 | 12.00 | 0.01 | 1.715 | 4.09 | 0.16 | 6.0 | 94.0 | 0.0 | -5.28 | 0.42 | 0.68 | 1.52 | 4.1 | 0.002 | 0.66 | 0.0 | 0.04 | 14.58 | 0.00 | 2.130 | 9.49 | 3.41 | 5.9 | 94.1 | 0.0 | -1.00 | 3.50 | 0.46 | 0.73 | 2.12 | 6141 | 768 | 5 | 0 | 4 | 0 | 0 | logfile |
✔ | 6V6S | 21073 | 2024-03-10 | 2019-12-05 | 4.3 | 3.91 | — | 3.8 | 0.006 | 0.75 | 1.0 | 0.05 | 13.81 | 0.00 | 2.102 | 10.50 | 0.63 | 5.0 | 94.9 | 0.1 | -4.11 | 0.58 | 0.50 | — | 3.8 | 0.003 | 0.71 | 0.0 | 0.04 | 13.93 | 0.00 | 2.101 | 9.84 | 0.03 | 3.2 | 96.7 | 0.0 | -0.18 | 1.12 | 0.58 | 0.55 | — | 106422 | 13155 | 53 | 14 | 721 | 0 | 0 | logfile |
✔ | 6X0V | 21985 | 2024-03-10 | 2020-05-17 | 4.5 | 4.37 | — | 4.4 | 0.003 | 0.62 | 1.0 | 0.04 | 11.58 | 0.00 | 2.285 | 15.16 | 4.48 | 3.5 | 96.0 | 0.5 | -2.45 | 0.40 | 0.74 | — | 4.4 | 0.002 | 0.48 | 0.0 | 0.04 | 12.67 | 0.00 | 2.226 | 17.39 | 0.00 | 5.0 | 95.0 | 0.0 | 2.29 | 1.17 | 0.40 | 0.75 | — | 1384 | 211 | 4 | 0 | 0 | 0 | 62 | logfile |
✔ | 8Di5 | 27439 | 2024-03-10 | 2022-06-28 | 3.04 | 3.55 | 3.03 | 3.5 | 0.006 | 0.95 | 0.0 | 0.06 | 12.40 | 0.01 | 2.300 | 4.17 | 0.38 | 3.3 | 96.7 | 0.0 | -2.40 | 0.65 | 0.80 | 4.29 | 3.5 | 0.003 | 0.57 | 0.0 | 0.04 | 15.51 | 0.00 | 2.237 | 10.85 | 1.89 | 2.9 | 97.1 | 0.0 | -1.39 | 0.51 | 0.64 | 0.80 | 3.64 | 2467 | 311 | 3 | 0 | 1 | 0 | 0 | logfile |