Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PY2	13708	2023-02-16	2021-10-08	2.59	2.64	1.54	2.7	0.015	1.83	0.0	0.08	17.26	0.01	2.423	1.71	2.00	9.1	90.9	0.0	-5.22	0.45	0.84	6.05	2.8	0.006	0.92	0.0	0.05	18.12	0.00	2.134	2.20	2.50	5.2	94.8	0.0	-3.96	1.38	0.49	0.88	5.69	2152	316	4	0	0	0	0	logfile
✔	6VHA	21201	2023-02-16	2020-01-09	4.3	4.35	—	7.8	0.007	1.02	0.0	0.05	15.14	0.01	2.319	26.84	2.13	12.4	87.6	0.0	-4.78	0.55	0.54	—	4.1	0.003	0.74	0.0	0.05	13.40	0.00	2.336	12.82	0.00	9.8	90.2	0.0	-4.37	3.38	0.57	0.60	—	2439	321	3	0	0	0	0	logfile
✔	6GX5	0077	2023-02-16	2018-06-26	3.2	2.51	2.94	3.2	0.017	1.20	0.0	0.11	16.09	0.01	2.596	5.96	4.94	4.3	95.7	0.0	-3.50	0.85	0.88	5.60	3.2	0.004	0.76	0.0	0.05	17.31	0.00	2.207	9.16	1.65	5.8	94.2	0.0	-2.81	0.66	0.82	0.85	4.84	2133	282	3	0	0	0	0	logfile
✔	6ZRF	11380	2023-02-16	2020-07-13	3.6	3.66	1.96	3.6	0.014	1.28	0.0	0.05	13.30	0.00	1.993	42.14	0.00	4.9	95.1	0.0	-6.22	0.67	0.79	1.84	3.7	0.005	0.80	0.0	0.05	14.67	0.00	2.223	24.41	0.00	12.1	87.9	0.0	-5.90	0.52	0.69	0.82	3.16	2220	300	12	0	0	0	0	logfile
✔	6VPS	21316	2023-02-16	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.90	6.11	2.7	0.003	0.51	0.0	0.03	20.10	0.00	2.351	3.30	1.31	6.9	93.1	0.0	-3.83	1.19	0.47	0.87	6.39	2736	279	9	0	0	0	0	logfile
✔	7QL1	14060	2023-02-16	2021-12-19	3.34	3.41	3.13	3.4	0.011	2.01	0.0	0.10	11.06	0.01	2.654	0.29	0.00	7.5	92.5	0.0	-3.09	0.42	0.83	4.57	3.4	0.007	0.85	0.0	0.05	15.42	0.00	2.104	12.32	0.00	4.2	95.8	0.0	-2.34	1.74	0.39	0.81	4.21	1671	219	3	0	0	0	0	logfile
✔	7V47	31702	2023-02-16	2021-08-12	2.8	2.80	—	3.0	0.007	0.78	0.0	0.06	12.91	0.00	2.567	6.32	0.00	18.6	81.4	0.0	-5.86	0.44	0.80	6.31	2.9	0.005	0.72	0.0	0.06	17.25	0.00	2.432	8.29	3.25	20.3	79.7	0.0	-4.30	0.33	0.44	0.80	6.27	2484	366	6	0	0	0	0	logfile
✔	7USB	26731	2023-02-16	2022-04-23	3.1	3.28	3.18	3.3	0.012	1.70	0.0	0.11	10.61	0.01	2.590	1.61	1.39	5.5	94.5	0.0	-0.28	0.59	0.76	5.40	3.3	0.007	0.80	0.0	0.05	13.30	0.00	2.421	5.78	0.00	6.5	93.5	0.0	-1.76	1.34	0.61	0.84	5.47	1661	213	3	0	5	0	0	logfile
✔	7XJX	33236	2023-02-16	2022-04-18	2.7	2.78	1.76	2.9	0.008	0.81	0.0	0.06	12.77	0.00	2.438	12.63	0.00	16.4	83.6	0.0	-5.02	0.48	0.81	4.92	2.9	0.006	0.81	0.0	0.05	14.46	0.00	2.387	11.15	3.70	15.6	84.4	0.0	-3.69	1.14	0.45	0.81	5.25	2628	378	6	0	0	0	0	logfile
✔	6QJM	4564	2023-02-16	2019-01-24	3.3	3.49	1.95	3.4	0.010	1.01	0.0	0.07	8.06	0.01	2.408	6.17	0.00	9.1	90.9	0.0	-2.36	0.38	0.76	3.31	3.5	0.003	0.57	0.0	0.05	13.66	0.00	2.146	4.49	0.00	5.1	94.9	0.0	-2.42	1.59	0.33	0.73	2.58	846	111	3	0	0	0	0	logfile
✔	7U0Z	26268	2023-02-16	2022-02-19	4.2	3.55	—	4.3	0.004	0.75	0.0	0.05	11.44	0.00	2.146	12.81	0.00	1.9	98.1	0.0	-2.57	0.41	0.71	—	4.3	0.003	0.68	0.0	0.05	12.66	0.00	2.230	10.24	0.00	4.6	95.4	0.0	-3.26	0.68	0.37	0.71	—	2487	330	3	0	0	0	0	logfile
✔	7JZU	22574	2023-02-16	2020-09-02	3.1	3.26	3.10	3.3	0.015	1.33	0.0	0.08	9.63	0.01	2.509	0.78	0.00	3.3	96.7	0.0	0.23	0.69	0.76	4.15	3.3	0.002	0.55	0.0	0.04	14.20	0.00	2.251	5.70	0.00	1.6	98.4	0.0	0.79	1.62	0.71	0.79	3.98	1987	248	3	0	3	0	0	logfile
✔	7JV2	22491	2023-02-16	2020-08-20	3.5	3.49	3.41	3.7	0.015	1.39	0.0	0.08	11.43	0.01	2.587	0.00	1.32	3.6	96.4	0.0	0.82	0.69	0.74	3.48	3.7	0.004	0.72	0.0	0.04	14.90	0.00	2.223	14.03	0.44	5.5	94.5	0.0	-0.83	1.27	0.71	0.77	3.76	2151	282	3	0	0	0	0	logfile
✔	7Xo0	33332	2023-02-16	2022-04-30	3.0	2.48	1.85	3.1	0.001	0.39	0.0	0.05	16.62	0.00	2.280	4.76	0.00	5.0	95.0	0.0	-2.66	0.47	0.87	7.11	3.1	0.003	0.43	0.0	0.05	17.01	0.00	2.241	5.71	1.94	5.8	94.2	0.0	-2.86	0.38	0.47	0.87	6.51	2550	372	6	0	0	0	0	logfile
✔	7QK3	14030	2023-02-16	2021-12-17	2.44	2.73	2.35	2.7	0.010	2.07	0.0	0.11	12.55	0.01	2.519	0.00	0.00	3.4	96.6	0.0	-3.04	0.38	0.77	5.65	2.7	0.003	0.72	0.0	0.05	16.27	0.00	2.309	2.92	0.64	2.8	97.2	0.0	-2.78	2.36	0.39	0.82	5.18	2742	183	3	0	0	0	1407	logfile
✔	7QKZ	14058	2023-02-16	2021-12-19	2.65	2.79	2.28	3.2	0.013	2.86	9.0	0.34	18.75	0.02	2.498	0.59	0.00	9.9	90.1	0.0	-1.61	0.34	0.61	7.02	2.7	0.006	1.50	0.0	0.38	19.60	0.01	2.257	11.23	0.00	1.2	98.8	0.0	-0.53	5.08	0.34	0.64	6.63	1701	99	9	0	0	0	891	logfile
✔	7WMM	32615	2023-02-16	2022-01-15	2.6	2.33	—	2.7	0.008	1.10	0.0	0.05	12.99	0.00	2.361	6.18	0.00	6.8	93.2	0.0	-2.83	0.51	0.88	6.56	2.7	0.003	0.67	0.0	0.05	16.82	0.00	2.273	3.95	0.38	5.6	94.4	0.0	-1.93	0.51	0.52	0.89	5.74	2618	366	8	0	2	0	0	logfile
✘	5M5H	4155	2023-02-16	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1086	132	1	0	0	0	0	logfile
✔	7MJi	23874	2023-02-16	2021-04-20	2.81	3.32	—	3.2	0.006	0.80	0.0	0.05	12.43	0.01	2.367	2.85	0.00	2.8	97.2	0.0	-0.83	0.56	0.84	4.52	3.2	0.004	0.58	0.0	0.04	15.28	0.00	2.316	8.14	2.94	1.9	98.1	0.0	0.12	1.44	0.57	0.85	4.66	2522	320	3	0	1	0	0	logfile
✔	8DM2	27524	2023-02-16	2022-07-08	2.91	3.71	2.85	3.6	0.007	0.99	0.0	0.07	12.79	0.01	2.362	4.12	0.44	2.5	97.5	0.0	-0.51	0.57	0.66	2.14	3.6	0.004	0.72	0.0	0.05	16.06	0.00	2.272	9.45	2.22	4.6	95.4	0.0	-0.98	1.12	0.61	0.74	3.53	2104	249	3	0	6	0	0	logfile

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