Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PQQ	13596	2022-07-02	2021-09-18	3.3	3.44	—	3.5	0.004	0.69	0.0	0.04	14.02	0.00	2.244	12.20	0.00	4.6	95.4	0.0	-2.50	0.44	0.73	3.02	3.4	0.003	0.68	0.0	0.04	16.38	0.00	2.209	10.37	0.28	3.6	96.4	0.0	-1.62	0.52	0.45	0.75	2.03	3207	417	2	0	0	0	0	logfile
✔	7PQG	13593	2022-07-02	2021-09-21	3.7	4.20	—	4.0	0.004	0.88	0.0	0.05	12.56	0.01	2.204	28.36	0.28	7.4	92.6	0.0	-0.87	0.56	0.76	0.82	4.0	0.005	1.15	0.0	0.06	15.61	0.01	2.144	36.06	0.28	7.9	92.1	0.0	-1.40	1.22	0.56	0.77	0.82	3251	423	2	0	0	0	0	logfile
✔	7UHB	26511	2022-07-02	2022-03-26	3.0	3.17	2.97	3.2	0.011	1.35	3.0	0.12	9.86	0.00	2.562	5.08	1.42	3.0	96.6	0.4	-0.52	0.52	0.54	-0.09	3.1	0.003	0.62	0.0	0.04	16.15	0.00	2.244	9.43	1.90	3.4	96.6	0.0	0.52	2.43	0.70	0.83	3.49	2141	270	3	0	3	0	0	logfile
✔	7QES	13939	2022-07-02	2021-12-03	2.6	3.37	—	3.0	0.009	0.66	0.0	0.04	13.87	0.00	2.122	3.25	0.00	3.9	96.1	0.0	-0.99	0.77	0.86	3.39	3.0	0.003	0.61	0.0	0.04	15.28	0.00	2.162	3.90	0.91	3.1	96.9	0.0	2.67	1.25	0.78	0.86	2.82	3076	366	6	0	10	14	0	logfile
✔	7QEV	13942	2022-07-02	2021-12-03	2.9	3.46	—	3.1	0.010	0.74	0.0	0.05	13.76	0.00	2.164	5.92	0.00	4.3	95.7	0.0	-0.15	0.79	0.86	3.19	3.1	0.003	0.66	0.0	0.04	15.95	0.00	2.153	5.61	1.17	2.9	97.1	0.0	2.25	1.67	0.79	0.86	2.57	3204	383	6	0	8	8	0	logfile
✔	7Z13	14439	2022-07-02	2022-02-24	3.4	3.29	—	3.3	0.003	0.66	2.0	0.04	15.72	0.00	1.997	7.37	0.13	3.8	96.1	0.0	-0.12	0.66	0.78	2.01	3.3	0.003	0.64	0.0	0.04	17.68	0.00	2.026	7.53	0.31	4.1	95.9	0.0	0.14	0.48	0.65	0.81	1.75	107381	13128	42	106	32	0	0	logfile
✔	7WRL	32732	2022-07-02	2022-01-27	3.51	3.69	—	3.6	0.006	1.03	0.0	0.06	14.71	0.01	2.289	5.84	0.00	13.4	86.6	0.0	-4.19	0.64	0.78	2.31	3.6	0.004	0.67	0.0	0.04	15.83	0.00	2.221	11.36	0.28	12.2	87.8	0.0	-3.33	0.53	0.63	0.78	2.78	3251	419	3	0	0	0	0	logfile
✔	7WRo	32734	2022-07-02	2022-01-27	3.4	3.62	—	3.6	0.008	1.11	0.0	0.07	13.65	0.01	2.309	7.58	0.00	7.6	92.4	0.0	-1.94	0.58	0.76	2.56	3.6	0.004	0.68	0.0	0.04	15.11	0.01	2.258	13.22	0.00	4.2	95.8	0.0	-1.18	0.33	0.59	0.78	2.40	3179	412	3	0	0	0	0	logfile
✘	7PD3	13329	2022-07-02	2021-08-04	3.4	2.98	3.16	3.0	0.009	1.08	2.0	0.11	16.11	0.01	1.125	5.22	0.01	5.6	94.2	0.2	-3.47	0.64	0.66	1.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	108076	9276	76	1522	125	0	0	logfile
✔	7UiU	26553	2022-07-02	2022-03-29	2.8	3.11	2.72	3.1	0.004	0.62	0.0	0.04	13.60	0.00	2.356	4.19	0.00	4.8	95.2	0.0	-2.09	0.28	0.82	1.99	3.3	0.004	0.95	0.0	0.04	17.47	0.00	2.262	11.74	1.67	6.0	94.0	0.0	-1.79	1.38	0.28	0.89	2.33	607	85	1	0	0	0	0	logfile
✔	5LiJ	4054	2022-07-02	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.61	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.004	1.12	0.0	0.04	9.66	0.00	2.166	11.82	0.00	32.0	68.0	0.0	-5.62	1.49	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✔	6R23	4708	2022-07-02	2019-03-15	4.9	4.57	—	4.6	0.006	1.07	0.0	0.05	16.56	0.01	2.332	7.52	0.00	7.9	92.1	0.0	-4.61	0.60	0.75	—	4.6	0.003	0.59	0.0	0.03	16.52	0.00	2.361	7.85	0.00	6.7	93.3	0.0	0.29	3.60	0.60	0.73	—	1518	182	2	0	0	0	0	logfile
✔	6TGN	10499	2022-07-02	2019-11-17	3.9	3.83	—	4.0	0.010	1.73	0.0	0.12	11.93	0.01	2.161	5.17	1.39	4.7	95.3	0.0	-3.57	0.54	0.90	1.73	4.0	0.004	0.93	0.0	0.04	15.61	0.00	2.436	12.55	0.00	2.3	97.7	0.0	0.20	1.16	0.53	0.82	1.30	672	88	1	0	0	0	0	logfile
✔	6oG3	20051	2022-07-02	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.006	1.22	0.0	0.00	8.59	0.00	2.605	57.07	0.00	14.1	85.9	0.0	-1.78	2.19	0.66	0.84	—	1215	396	4	0	9	0	0	logfile
✔	6N37	9339	2022-07-02	2018-11-14	3.8	3.51	—	4.2	0.009	1.42	0.0	0.06	16.98	0.01	2.399	13.15	0.00	14.7	85.3	0.0	-5.92	0.51	0.77	3.18	3.6	0.004	0.78	0.0	0.04	18.43	0.00	2.266	20.72	0.80	11.2	88.8	0.0	-5.14	0.89	0.52	0.77	2.42	2580	360	10	0	0	0	0	logfile
✔	6N3B	9350	2022-07-02	2018-11-14	3.8	3.75	—	4.0	0.010	1.21	0.0	0.05	11.40	0.01	2.253	20.70	0.00	13.7	86.3	0.0	-5.17	0.41	0.71	2.90	4.0	0.005	0.87	0.0	0.04	16.51	0.01	2.102	26.34	1.51	13.2	86.8	0.0	-5.29	1.48	0.42	0.71	1.88	2735	385	10	0	0	0	0	logfile
✔	6J2X	9772	2022-07-02	2019-01-03	3.8	3.99	—	3.9	0.002	0.40	0.0	0.04	7.12	0.00	2.220	6.73	0.00	5.8	94.1	0.1	-3.52	0.80	0.70	0.49	3.9	0.006	0.88	1.0	0.05	15.41	0.01	1.603	21.95	0.40	4.7	95.2	0.2	-0.89	1.88	0.84	0.77	0.95	106176	13501	47	0	0	0	0	logfile
✔	6RWE	10038	2022-07-02	2019-06-04	3.0	3.12	—	3.7	0.009	1.02	1.0	0.06	13.12	0.01	1.975	6.79	0.73	7.4	92.5	0.1	-4.84	0.44	0.32	0.00	3.1	0.008	1.01	2.0	0.05	18.21	0.01	2.002	17.29	2.52	6.2	93.8	0.0	-1.73	1.38	0.71	0.73	1.38	53719	6454	26	95	8	0	0	logfile
✔	6MRT	9212	2022-07-02	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.46	0.0	0.03	15.43	0.00	2.226	3.14	1.29	0.5	99.5	0.0	5.71	3.08	0.73	0.87	2.07	26868	3420	12	0	0	0	0	logfile
✔	6CoZ	7545	2022-07-02	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.82	0.0	0.04	4.96	0.00	2.368	4.42	0.00	8.3	91.7	0.0	-1.63	1.58	0.82	0.76	—	1586	320	2	0	0	0	0	logfile

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