Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3JCF	6551	2022-07-04	2015-12-11	3.8	4.02	—	3.9	0.004	1.03	0.0	0.04	6.81	0.00	2.057	8.41	0.00	4.6	95.4	0.0	-1.63	0.74	0.81	2.11	3.9	0.003	0.66	0.0	0.04	12.69	0.00	1.975	12.25	0.13	3.6	96.4	0.0	1.83	0.69	0.74	0.85	1.74	14228	1745	10	0	13	0	0	logfile
✔	7JG7	22313	2022-07-04	2020-07-18	3.5	2.41	3.57	3.4	0.008	1.54	0.0	0.00	6.82	0.01	2.433	0.00	0.00	2.9	96.9	0.1	-0.73	0.63	0.55	—	2.3	0.006	1.15	0.0	0.00	7.25	0.01	2.136	3.94	0.00	14.0	85.9	0.1	-2.12	1.65	0.74	0.72	—	19316	4818	20	0	11	0	0	logfile
✔	6WTH	21896	2022-07-03	2020-05-02	3.06	3.56	3.08	3.4	0.002	0.54	0.0	0.04	6.83	0.00	2.217	5.08	0.84	2.2	97.8	0.0	-3.50	0.72	0.75	3.88	3.4	0.003	0.54	0.0	0.04	12.61	0.00	2.188	7.37	0.28	3.8	96.2	0.0	-0.75	0.60	0.78	0.87	3.74	11740	1183	12	0	422	0	0	logfile
✔	6Y50	10688	2022-07-04	2020-02-24	4.1	4.22	—	4.0	0.003	0.52	0.0	0.04	6.93	0.00	0.761	13.95	0.00	5.9	93.9	0.2	-3.48	0.68	0.68	—	4.0	0.004	0.67	0.0	0.05	9.54	0.00	2.003	8.78	0.00	11.0	88.9	0.1	-1.71	0.52	0.71	0.73	—	14916	2537	10	50	3	0	0	logfile
✔	6oLM	20117	2022-07-04	2019-04-16	4.4	5.29	—	4.3	0.012	1.28	0.0	0.06	6.94	0.01	2.397	0.92	0.00	2.0	98.0	0.0	-0.33	0.89	0.79	—	4.3	0.003	0.66	0.0	0.04	5.44	0.00	2.217	8.78	0.00	6.2	93.8	0.0	-0.92	1.58	0.91	0.83	—	10602	2112	12	0	6	0	0	logfile
✔	6oLL	20116	2022-07-04	2019-04-16	4.1	4.59	—	4.4	0.004	1.05	0.0	0.06	6.94	0.01	2.400	0.40	0.00	2.0	97.8	0.2	-0.51	0.67	0.58	—	4.4	0.004	0.78	0.0	0.04	5.43	0.00	2.174	5.73	0.00	13.1	86.9	0.0	-2.32	2.07	0.74	0.68	—	10426	2114	6	0	0	0	0	logfile
✔	7TKG	25968	2022-07-04	2022-01-17	4.5	7.60	4.79	4.2	0.019	2.20	0.0	0.00	6.95	0.01	2.361	0.08	0.00	4.3	94.2	1.5	-0.60	0.58	0.61	—	4.2	0.005	0.95	0.0	0.00	6.53	0.00	2.099	18.88	0.00	13.4	86.4	0.2	-2.17	1.58	0.81	0.81	—	20228	5056	27	0	0	0	0	logfile
✔	6MHW	9120	2022-07-06	2018-09-18	4.0	4.10	3.97	4.0	0.004	0.62	0.0	0.13	7.02	0.00	1.933	7.04	0.00	3.4	96.6	0.0	-2.09	0.79	0.77	—	4.0	0.003	0.67	0.0	0.12	12.85	0.00	1.905	10.25	0.25	5.4	94.6	0.0	1.46	1.49	0.79	0.79	—	34414	2452	4	0	0	0	16514	logfile
✔	7MJP	23881	2022-07-04	2021-04-20	4.2	4.40	—	4.3	0.007	1.11	0.0	0.07	7.09	0.01	1.477	2.76	0.00	9.1	90.9	0.0	-1.16	0.51	0.65	—	4.4	0.002	0.62	0.0	0.05	5.79	0.00	2.276	1.31	0.00	9.5	90.5	0.0	-0.73	0.44	0.57	0.70	—	14163	2818	10	0	8	0	0	logfile
✔	6PLP	20371	2022-07-04	2019-07-01	3.3	3.51	—	3.8	0.001	0.46	0.0	0.04	7.10	0.00	2.285	5.97	0.00	2.0	98.0	0.0	-4.40	0.44	0.72	3.32	3.6	0.003	0.61	0.0	0.04	13.45	0.01	2.131	10.00	0.52	2.9	97.1	0.0	-0.71	1.19	0.45	0.75	2.86	14240	1730	15	0	20	0	0	logfile
✔	6PLQ	20372	2022-07-04	2019-07-01	3.4	4.30	—	4.3	0.001	0.46	0.0	0.04	7.10	0.00	2.285	5.97	0.00	2.0	98.0	0.0	-4.40	0.57	0.36	0.62	4.0	0.014	1.11	0.0	0.05	14.48	0.01	2.108	16.00	0.52	3.8	96.2	0.0	-1.09	1.67	0.71	0.72	0.89	14240	1730	15	0	20	0	0	logfile
✔	7VXC	32175	2022-07-07	2021-11-12	3.9	4.21	—	4.1	0.002	0.40	0.0	0.04	7.11	0.00	2.022	12.45	0.00	4.2	95.8	0.0	-1.96	0.63	0.62	0.87	4.1	0.008	0.85	1.0	0.04	14.01	0.00	1.727	37.75	0.30	5.6	94.3	0.1	-0.77	1.70	0.67	0.73	1.15	46264	3801	4	0	0	0	16332	logfile
✔	6KRE	0757	2022-07-03	2019-08-21	4.45	4.34	—	4.4	0.001	0.39	0.0	0.04	7.11	0.00	2.244	6.14	0.03	4.1	95.8	0.1	-3.50	0.61	0.56	—	4.4	0.004	0.75	1.0	0.04	12.02	0.00	2.101	12.70	0.05	3.2	96.8	0.1	0.24	1.77	0.65	0.62	—	60321	7922	16	0	0	0	0	logfile
✔	6KS7	0759	2022-07-03	2019-08-23	4.62	4.57	—	4.5	0.001	0.39	0.0	0.04	7.11	0.00	2.241	5.80	0.00	4.3	95.7	0.0	-3.50	0.70	0.62	—	4.5	0.009	0.91	0.0	0.05	12.10	0.00	1.014	21.96	0.03	3.5	96.4	0.1	-0.25	1.82	0.74	0.68	—	62022	8131	16	0	0	0	0	logfile
✔	7RFP	24444	2022-07-03	2021-07-14	4.4	4.57	—	4.3	0.014	2.06	8.0	0.12	7.12	0.01	1.581	3.60	8.00	9.5	87.5	3.0	-1.46	0.68	0.61	—	4.3	0.004	0.91	0.0	0.04	6.89	0.00	2.185	8.70	0.00	15.2	84.3	0.5	-4.03	1.49	0.80	0.75	—	5532	1114	6	0	0	0	0	logfile
✔	7WK9	32563	2022-07-06	2022-01-08	3.48	3.16	—	3.7	0.002	0.47	0.0	0.04	7.12	0.00	2.151	7.47	0.00	3.8	96.1	0.1	-2.01	0.60	0.48	0.90	3.7	0.004	0.77	0.0	0.04	14.04	0.01	2.091	13.15	0.57	3.4	96.6	0.1	-0.37	1.14	0.77	0.75	1.25	29907	3823	7	0	0	0	0	logfile
✔	6KS8	0760	2022-07-03	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.95	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.003	0.69	0.0	0.04	11.61	0.00	2.100	15.65	0.01	3.0	97.0	0.0	-0.13	1.85	0.80	0.71	—	61943	8120	16	0	0	0	0	logfile
✔	6J2X	9772	2022-07-02	2019-01-03	3.8	3.99	—	3.9	0.002	0.40	0.0	0.04	7.12	0.00	2.220	6.73	0.00	5.8	94.1	0.1	-3.52	0.80	0.70	0.49	3.9	0.006	0.88	1.0	0.05	15.41	0.01	1.603	21.95	0.40	4.7	95.2	0.2	-0.89	1.88	0.84	0.77	0.95	106176	13501	47	0	0	0	0	logfile
✔	6KRD	0756	2022-07-03	2019-08-21	4.38	4.25	—	4.4	0.001	0.39	0.0	0.04	7.15	0.00	2.226	5.90	0.00	4.5	95.5	0.1	-3.58	0.57	0.52	—	4.3	0.008	0.86	1.0	0.05	11.99	0.00	1.822	15.52	0.01	3.3	96.6	0.1	-0.02	1.78	0.63	0.59	—	61005	8006	16	0	0	0	0	logfile
✔	6J2Q	9771	2022-07-02	2019-01-02	3.8	3.95	—	3.9	0.002	0.40	0.0	0.04	7.17	0.00	2.202	6.66	0.00	5.5	94.4	0.1	-3.50	0.77	0.68	0.88	3.9	0.004	0.79	0.0	0.04	15.52	0.01	2.019	16.08	0.55	4.3	95.6	0.1	-0.65	2.27	0.82	0.76	1.06	106311	13518	47	0	0	0	0	logfile

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