Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TKH	25969	2022-12-14	2022-01-17	4.4	7.29	4.45	4.2	0.019	2.19	0.0	0.00	6.81	0.01	2.385	0.08	0.00	3.9	94.7	1.4	-0.35	0.59	0.62	—	4.2	0.013	1.06	0.0	0.00	5.97	0.00	2.028	15.64	0.00	10.8	88.9	0.2	-0.13	1.65	0.83	0.84	—	20228	5056	27	0	0	0	0	logfile
✔	3JCF	6551	2022-12-13	2015-12-11	3.8	4.02	—	3.9	0.004	1.03	0.0	0.04	6.81	0.00	2.057	8.41	0.00	4.6	95.4	0.0	-1.63	0.74	0.81	2.11	3.9	0.003	0.66	0.0	0.04	12.69	0.00	1.975	12.25	0.13	3.6	96.4	0.0	1.83	0.69	0.74	0.85	1.74	14228	1745	10	0	13	0	0	logfile
✔	7JG7	22313	2022-12-14	2020-07-18	3.5	2.41	3.57	3.4	0.008	1.54	0.0	0.00	6.82	0.01	2.433	0.00	0.00	2.9	96.9	0.1	-0.73	0.63	0.55	—	2.3	0.006	1.15	0.0	0.00	7.25	0.01	2.136	3.94	0.00	14.0	85.9	0.1	-2.12	1.65	0.74	0.72	—	19316	4818	20	0	11	0	0	logfile
✔	6WTH	21896	2022-12-12	2020-05-02	3.06	3.56	3.08	3.4	0.002	0.54	0.0	0.04	6.83	0.00	2.217	5.08	0.84	2.2	97.8	0.0	-3.50	0.72	0.75	3.88	3.4	0.005	0.60	0.0	0.04	12.58	0.00	2.186	7.41	0.37	4.2	95.8	0.0	-0.89	0.60	0.78	0.88	3.83	11740	1183	12	0	422	0	0	logfile
✔	6Y50	10688	2022-12-13	2020-02-24	4.1	4.22	—	4.0	0.003	0.52	0.0	0.04	6.93	0.00	0.761	13.95	0.00	5.9	93.9	0.2	-3.48	0.68	0.68	—	4.0	0.004	0.67	0.0	0.05	9.46	0.00	2.009	8.78	0.00	13.0	86.9	0.1	-1.68	0.55	0.72	0.73	—	14916	2537	10	50	3	0	0	logfile
✔	6oLL	20116	2022-12-14	2019-04-16	4.1	4.59	—	4.4	0.004	1.05	0.0	0.06	6.94	0.01	2.400	0.40	0.00	2.0	97.8	0.2	-0.51	0.67	0.58	—	4.4	0.004	0.78	0.0	0.04	5.43	0.00	2.174	5.73	0.00	13.1	86.9	0.0	-2.32	2.07	0.74	0.68	—	10426	2114	6	0	0	0	0	logfile
✔	6oLM	20117	2022-12-14	2019-04-16	4.4	5.29	—	4.3	0.012	1.28	0.0	0.06	6.94	0.01	2.397	0.92	0.00	2.0	98.0	0.0	-0.33	0.89	0.79	—	4.3	0.003	0.66	0.0	0.04	5.44	0.00	2.217	8.78	0.00	6.2	93.8	0.0	-0.92	1.58	0.91	0.83	—	10602	2112	12	0	6	0	0	logfile
✔	7TKG	25968	2022-12-14	2022-01-17	4.5	7.60	4.79	4.2	0.019	2.20	0.0	0.00	6.95	0.01	2.361	0.08	0.00	4.3	94.2	1.5	-0.60	0.58	0.61	—	4.2	0.005	0.95	0.0	0.00	6.53	0.00	2.099	18.88	0.00	13.4	86.4	0.2	-2.17	1.58	0.81	0.81	—	20228	5056	27	0	0	0	0	logfile
✔	6MHW	9120	2022-12-18	2018-09-18	4.0	4.10	3.97	4.0	0.004	0.62	0.0	0.13	7.02	0.00	1.933	7.04	0.00	3.4	96.6	0.0	-2.09	0.79	0.77	—	4.0	0.003	0.67	0.0	0.12	12.85	0.00	1.905	10.25	0.25	5.4	94.6	0.0	1.46	1.49	0.79	0.79	—	34414	2452	4	0	0	0	16514	logfile
✔	7ZQE	14872	2022-12-11	2022-04-29	2.55	3.20	—	2.5	0.002	0.42	0.0	0.05	7.04	0.01	2.076	4.21	0.00	1.0	99.0	0.0	-0.73	0.36	0.50	3.22	2.9	0.002	0.52	0.0	0.04	10.05	0.00	2.097	7.02	0.00	3.1	96.9	0.0	0.37	0.86	0.37	0.55	-0.06	1423	98	1	0	1	0	694	logfile
✔	7MJP	23881	2022-12-13	2021-04-20	4.2	4.40	—	4.3	0.007	1.11	0.0	0.07	7.09	0.01	1.477	2.91	0.00	9.1	90.9	0.0	-1.16	0.51	0.65	—	4.4	0.002	0.62	0.0	0.05	5.76	0.00	2.279	1.26	0.00	9.8	90.2	0.0	-0.62	0.43	0.57	0.70	—	14163	2818	10	0	8	0	0	logfile
✔	6PLP	20371	2022-12-13	2019-07-01	3.3	3.51	—	3.8	0.001	0.46	0.0	0.04	7.10	0.00	2.285	5.97	0.00	2.0	98.0	0.0	-4.40	0.44	0.72	3.32	3.6	0.003	0.64	0.0	0.04	13.54	0.00	2.131	10.25	0.52	3.2	96.8	0.0	-0.82	1.21	0.44	0.75	2.82	14240	1730	15	0	20	0	0	logfile
✔	6PLQ	20372	2022-12-13	2019-07-01	3.4	4.30	—	4.3	0.001	0.46	0.0	0.04	7.10	0.00	2.285	5.97	0.00	2.0	98.0	0.0	-4.40	0.57	0.36	0.62	3.9	0.003	0.94	0.0	0.05	14.68	0.00	2.145	15.13	0.52	3.9	96.1	0.0	-1.13	1.75	0.72	0.76	1.14	14240	1730	15	0	20	0	0	logfile
✔	6KRE	0757	2022-12-12	2019-08-21	4.45	4.34	—	4.4	0.001	0.39	0.0	0.04	7.11	0.00	2.244	6.14	0.03	4.1	95.8	0.1	-3.50	0.61	0.56	—	4.4	0.003	0.69	0.0	0.04	12.31	0.00	2.098	13.62	0.00	3.7	96.3	0.1	0.06	1.83	0.67	0.65	—	60321	7922	16	0	0	0	0	logfile
✔	6KS7	0759	2022-12-12	2019-08-23	4.62	4.57	—	4.5	0.001	0.39	0.0	0.04	7.11	0.00	2.241	5.80	0.00	4.3	95.7	0.0	-3.50	0.70	0.62	—	4.5	0.004	0.76	0.0	0.05	12.15	0.00	2.078	18.53	0.03	4.3	95.6	0.1	-0.34	1.90	0.75	0.69	—	62022	8131	16	0	0	0	0	logfile
✔	7VXC	32175	2022-12-21	2021-11-12	3.9	4.21	—	4.1	0.002	0.40	0.0	0.04	7.11	0.00	2.022	12.45	0.00	4.2	95.8	0.0	-1.96	0.63	0.62	0.87	4.1	0.003	0.61	0.0	0.04	13.91	0.00	1.808	36.93	0.36	5.2	94.7	0.1	-0.23	1.71	0.68	0.73	1.13	46264	3801	4	0	0	0	16332	logfile
✔	6KS8	0760	2022-12-12	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.95	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.004	0.80	1.0	0.05	11.72	0.00	2.042	24.03	0.00	4.6	95.3	0.0	-0.71	1.94	0.82	0.74	—	61943	8120	16	0	0	0	0	logfile
✔	7RFP	24444	2022-12-11	2021-07-14	4.4	4.57	—	4.3	0.014	2.06	8.0	0.12	7.12	0.01	1.581	3.60	8.00	9.5	87.5	3.0	-1.46	0.68	0.61	—	4.3	0.004	0.91	0.0	0.04	6.89	0.00	2.185	8.70	0.00	15.2	84.3	0.5	-4.03	1.49	0.80	0.75	—	5532	1114	6	0	0	0	0	logfile
✔	6KRD	0756	2022-12-12	2019-08-21	4.38	4.25	—	4.4	0.001	0.39	0.0	0.04	7.15	0.00	2.226	5.90	0.00	4.5	95.5	0.1	-3.58	0.57	0.52	—	4.3	0.003	0.71	0.0	0.04	12.25	0.00	2.094	13.02	0.03	3.9	96.1	0.1	-0.44	1.85	0.65	0.65	—	61005	8006	16	0	0	0	0	logfile
✔	7VXA	32173	2022-12-21	2021-11-12	3.9	4.16	—	4.1	0.002	0.41	0.0	0.04	7.17	0.00	2.017	13.02	0.00	4.3	95.7	0.0	-1.90	0.60	0.60	0.95	4.0	0.003	0.58	0.0	0.04	13.72	0.00	1.935	31.14	0.33	4.3	95.7	0.1	-0.47	1.71	0.65	0.72	1.00	46176	3795	4	0	0	0	16288	logfile

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