Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8G0C	29653	2023-04-25	2023-01-31	2.8	3.69	2.84	2.8	0.005	0.85	0.0	0.17	6.80	0.00	1.814	0.39	0.00	2.6	97.3	0.0	0.98	0.69	0.67	—	2.8	0.006	0.79	0.0	0.07	5.95	0.00	1.778	2.08	0.00	9.1	90.9	0.0	0.66	1.21	0.79	0.80	—	19874	4860	30	0	16	0	0	logfile
✔	6MZJ	9303	2023-04-22	2018-11-05	4.8	5.06	—	4.4	0.015	1.59	0.0	0.09	6.80	0.00	2.352	1.32	2.65	3.2	96.6	0.1	-0.18	0.70	0.72	—	4.5	0.006	1.16	0.0	0.05	7.35	0.01	2.136	10.22	0.00	12.0	87.9	0.1	-2.28	2.22	0.77	0.67	—	12653	2088	52	0	149	0	0	logfile
✔	3JCF	6551	2023-04-23	2015-12-11	3.8	4.02	—	3.9	0.004	1.03	0.0	0.04	6.81	0.00	2.057	8.41	0.00	4.6	95.4	0.0	-1.63	0.74	0.81	2.11	3.9	0.003	0.67	0.0	0.04	12.60	0.00	1.983	12.49	0.06	3.4	96.6	0.0	1.84	0.69	0.75	0.85	1.65	14228	1745	10	0	13	0	0	logfile
✔	7TKH	25969	2023-04-25	2022-01-17	4.4	7.29	4.45	4.2	0.019	2.19	0.0	0.00	6.81	0.01	2.385	0.08	0.00	3.9	94.7	1.4	-0.35	0.59	0.62	—	4.2	0.018	1.32	0.0	0.00	7.42	0.01	1.974	32.32	0.00	15.1	84.5	0.3	-2.28	1.70	0.83	0.84	—	20228	5056	27	0	0	0	0	logfile
✔	6WTH	21896	2023-04-22	2020-05-02	3.06	3.56	3.08	3.4	0.002	0.56	0.0	0.05	6.81	0.00	2.217	4.94	0.84	2.2	97.8	0.0	-3.50	0.72	0.75	3.88	3.4	0.003	0.55	0.0	0.04	12.70	0.00	2.208	6.90	0.37	4.0	96.0	0.0	-0.70	0.59	0.77	0.87	3.85	11740	1183	12	0	422	0	0	logfile
✔	7JG7	22313	2023-04-25	2020-07-18	3.5	2.41	3.57	3.4	0.008	1.54	0.0	0.00	6.82	0.01	2.433	0.00	0.00	2.9	96.9	0.1	-0.73	0.63	0.55	—	2.3	0.006	1.16	0.0	0.00	7.34	0.01	2.119	4.50	0.00	14.7	85.1	0.1	-2.00	1.65	0.74	0.72	—	19316	4818	20	0	11	0	0	logfile
✘	6PM5	20388	2023-04-23	2019-07-01	3.1	3.38	—	3.4	0.002	0.49	0.0	0.06	6.82	0.00	2.275	4.99	0.00	2.4	97.6	0.0	-4.42	0.52	0.78	3.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13975	1735	15	0	15	0	0	logfile
✔	6Y50	10688	2023-04-23	2020-02-24	4.1	4.22	—	4.0	0.003	0.52	0.0	0.04	6.93	0.00	0.761	13.95	0.00	5.9	93.9	0.2	-3.48	0.68	0.68	—	4.0	0.005	0.73	0.0	0.05	9.80	0.01	1.964	10.01	0.27	14.1	85.8	0.1	-1.88	0.56	0.71	0.74	—	14916	2537	10	50	3	0	0	logfile
✘	6oLL	20116	2023-04-25	2019-04-16	4.1	4.59	—	4.4	0.004	1.05	0.0	0.06	6.94	0.01	2.400	0.40	0.00	2.0	97.8	0.2	-0.51	0.67	0.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10426	2114	6	0	0	0	0	logfile
✔	7TKG	25968	2023-04-25	2022-01-17	4.5	7.60	4.79	4.2	0.019	2.20	0.0	0.00	6.95	0.01	2.361	0.08	0.00	4.3	94.2	1.5	-0.60	0.58	0.61	—	4.3	0.007	1.14	0.0	0.00	7.61	0.01	2.015	33.28	0.00	19.7	80.0	0.3	-3.26	2.09	0.77	0.80	—	20228	5056	27	0	0	0	0	logfile
✔	6KRE	0757	2023-04-21	2019-08-21	4.45	4.34	—	4.4	0.001	0.39	0.0	0.04	7.11	0.00	2.244	6.04	0.03	4.1	95.8	0.1	-3.50	0.61	0.56	—	4.4	0.003	0.68	0.0	0.04	11.97	0.00	2.090	13.71	0.03	3.5	96.4	0.1	0.20	1.80	0.67	0.64	—	60321	7922	16	0	0	0	0	logfile
✔	6KS7	0759	2023-04-22	2019-08-23	4.62	4.57	—	4.5	0.001	0.39	0.0	0.04	7.11	0.00	2.241	5.72	0.00	4.3	95.7	0.0	-3.50	0.70	0.62	—	4.5	0.003	0.70	0.0	0.04	12.04	0.00	2.131	14.80	0.03	3.3	96.6	0.1	-0.06	1.85	0.74	0.67	—	62022	8131	16	0	0	0	0	logfile
✔	6PLP	20371	2023-04-23	2019-07-01	3.3	3.51	—	3.8	0.002	0.53	0.0	0.05	7.12	0.00	2.285	5.97	0.00	2.0	98.0	0.0	-4.40	0.44	0.72	3.32	3.6	0.003	0.64	0.0	0.04	13.56	0.00	2.129	9.93	0.19	3.4	96.6	0.0	-0.70	1.66	0.42	0.72	2.82	14240	1730	15	0	20	0	0	logfile
✔	6PLQ	20372	2023-04-23	2019-07-01	3.4	4.30	—	4.3	0.002	0.53	0.0	0.05	7.12	0.00	2.285	5.97	0.00	2.0	98.0	0.0	-4.40	0.57	0.36	0.62	3.9	0.004	0.98	0.0	0.05	14.71	0.00	2.167	14.91	0.45	4.9	95.1	0.0	-1.16	2.47	0.73	0.78	1.41	14240	1730	15	0	20	0	0	logfile
✔	6J2X	9772	2023-04-19	2019-01-03	3.8	3.99	—	3.9	0.002	0.40	0.0	0.04	7.12	0.00	2.220	6.65	0.00	5.8	94.1	0.1	-3.52	0.80	0.70	0.49	3.9	0.004	0.78	1.0	0.04	15.31	0.00	2.050	18.52	0.40	4.7	95.2	0.1	-0.69	1.88	0.84	0.78	0.88	106176	13501	47	0	0	0	0	logfile
✔	7RFP	24444	2023-04-20	2021-07-14	4.4	4.57	—	4.3	0.014	2.06	8.0	0.12	7.12	0.01	1.581	3.60	8.00	9.5	87.5	3.0	-1.46	0.68	0.61	—	4.3	0.004	0.92	0.0	0.04	7.02	0.00	2.177	9.44	0.00	14.9	84.6	0.5	-3.98	1.49	0.80	0.75	—	5532	1114	6	0	0	0	0	logfile
✔	6KS8	0760	2023-04-22	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.86	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.003	0.73	0.0	0.05	11.70	0.00	2.011	17.70	0.01	3.4	96.6	0.0	-0.29	1.89	0.81	0.73	—	61943	8120	16	0	0	0	0	logfile
✔	6KRD	0756	2023-04-21	2019-08-21	4.38	4.25	—	4.4	0.001	0.39	0.0	0.04	7.15	0.00	2.226	5.80	0.00	4.5	95.5	0.1	-3.58	0.57	0.52	—	4.3	0.003	0.67	0.0	0.04	11.93	0.00	2.014	12.31	0.01	3.2	96.7	0.1	0.08	1.78	0.62	0.58	—	61005	8006	16	0	0	0	0	logfile
✔	6J2Q	9771	2023-04-19	2019-01-02	3.8	3.95	—	3.9	0.002	0.40	0.0	0.04	7.17	0.00	2.202	6.58	0.00	5.5	94.4	0.1	-3.50	0.77	0.68	0.88	3.9	0.003	0.74	0.0	0.04	15.50	0.00	2.058	15.76	0.38	4.1	95.8	0.1	-0.48	2.27	0.82	0.76	1.06	106311	13518	47	0	0	0	0	logfile
✔	7WK3	32557	2023-04-27	2022-01-08	3.4	2.86	—	3.4	0.004	0.56	0.0	0.04	7.18	0.00	1.998	3.79	0.00	3.6	96.3	0.0	-2.17	0.65	0.57	1.77	3.3	0.004	0.72	0.0	0.04	14.28	0.00	2.082	10.49	0.36	3.3	96.7	0.0	-0.16	1.11	0.79	0.79	1.77	24805	3162	3	0	0	0	0	logfile

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