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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7TKH | 25969 | 2022-12-14 | 2022-01-17 | 4.4 | 7.29 | 4.45 | 4.2 | 0.019 | 2.19 | 0.0 | 0.00 | 6.81 | 0.01 | 2.385 | 0.08 | 0.00 | 3.9 | 94.7 | 1.4 | -0.35 | 0.59 | 0.62 | — | 4.2 | 0.013 | 1.06 | 0.0 | 0.00 | 5.97 | 0.00 | 2.028 | 15.64 | 0.00 | 10.8 | 88.9 | 0.2 | -0.13 | 1.65 | 0.83 | 0.84 | — | 20228 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JCF | 6551 | 2022-12-13 | 2015-12-11 | 3.8 | 4.02 | — | 3.9 | 0.004 | 1.03 | 0.0 | 0.04 | 6.81 | 0.00 | 2.057 | 8.41 | 0.00 | 4.6 | 95.4 | 0.0 | -1.63 | 0.74 | 0.81 | 2.11 | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 12.69 | 0.00 | 1.975 | 12.25 | 0.13 | 3.6 | 96.4 | 0.0 | 1.83 | 0.69 | 0.74 | 0.85 | 1.74 | 14228 | 1745 | 10 | 0 | 13 | 0 | 0 | logfile |
✔ | 7JG7 | 22313 | 2022-12-14 | 2020-07-18 | 3.5 | 2.41 | 3.57 | 3.4 | 0.008 | 1.54 | 0.0 | 0.00 | 6.82 | 0.01 | 2.433 | 0.00 | 0.00 | 2.9 | 96.9 | 0.1 | -0.73 | 0.63 | 0.55 | — | 2.3 | 0.006 | 1.15 | 0.0 | 0.00 | 7.25 | 0.01 | 2.136 | 3.94 | 0.00 | 14.0 | 85.9 | 0.1 | -2.12 | 1.65 | 0.74 | 0.72 | — | 19316 | 4818 | 20 | 0 | 11 | 0 | 0 | logfile |
✔ | 6WTH | 21896 | 2022-12-12 | 2020-05-02 | 3.06 | 3.56 | 3.08 | 3.4 | 0.002 | 0.54 | 0.0 | 0.04 | 6.83 | 0.00 | 2.217 | 5.08 | 0.84 | 2.2 | 97.8 | 0.0 | -3.50 | 0.72 | 0.75 | 3.88 | 3.4 | 0.005 | 0.60 | 0.0 | 0.04 | 12.58 | 0.00 | 2.186 | 7.41 | 0.37 | 4.2 | 95.8 | 0.0 | -0.89 | 0.60 | 0.78 | 0.88 | 3.83 | 11740 | 1183 | 12 | 0 | 422 | 0 | 0 | logfile |
✔ | 6Y50 | 10688 | 2022-12-13 | 2020-02-24 | 4.1 | 4.22 | — | 4.0 | 0.003 | 0.52 | 0.0 | 0.04 | 6.93 | 0.00 | 0.761 | 13.95 | 0.00 | 5.9 | 93.9 | 0.2 | -3.48 | 0.68 | 0.68 | — | 4.0 | 0.004 | 0.67 | 0.0 | 0.05 | 9.46 | 0.00 | 2.009 | 8.78 | 0.00 | 13.0 | 86.9 | 0.1 | -1.68 | 0.55 | 0.72 | 0.73 | — | 14916 | 2537 | 10 | 50 | 3 | 0 | 0 | logfile |
✔ | 6oLL | 20116 | 2022-12-14 | 2019-04-16 | 4.1 | 4.59 | — | 4.4 | 0.004 | 1.05 | 0.0 | 0.06 | 6.94 | 0.01 | 2.400 | 0.40 | 0.00 | 2.0 | 97.8 | 0.2 | -0.51 | 0.67 | 0.58 | — | 4.4 | 0.004 | 0.78 | 0.0 | 0.04 | 5.43 | 0.00 | 2.174 | 5.73 | 0.00 | 13.1 | 86.9 | 0.0 | -2.32 | 2.07 | 0.74 | 0.68 | — | 10426 | 2114 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oLM | 20117 | 2022-12-14 | 2019-04-16 | 4.4 | 5.29 | — | 4.3 | 0.012 | 1.28 | 0.0 | 0.06 | 6.94 | 0.01 | 2.397 | 0.92 | 0.00 | 2.0 | 98.0 | 0.0 | -0.33 | 0.89 | 0.79 | — | 4.3 | 0.003 | 0.66 | 0.0 | 0.04 | 5.44 | 0.00 | 2.217 | 8.78 | 0.00 | 6.2 | 93.8 | 0.0 | -0.92 | 1.58 | 0.91 | 0.83 | — | 10602 | 2112 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 7TKG | 25968 | 2022-12-14 | 2022-01-17 | 4.5 | 7.60 | 4.79 | 4.2 | 0.019 | 2.20 | 0.0 | 0.00 | 6.95 | 0.01 | 2.361 | 0.08 | 0.00 | 4.3 | 94.2 | 1.5 | -0.60 | 0.58 | 0.61 | — | 4.2 | 0.005 | 0.95 | 0.0 | 0.00 | 6.53 | 0.00 | 2.099 | 18.88 | 0.00 | 13.4 | 86.4 | 0.2 | -2.17 | 1.58 | 0.81 | 0.81 | — | 20228 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MHW | 9120 | 2022-12-18 | 2018-09-18 | 4.0 | 4.10 | 3.97 | 4.0 | 0.004 | 0.62 | 0.0 | 0.13 | 7.02 | 0.00 | 1.933 | 7.04 | 0.00 | 3.4 | 96.6 | 0.0 | -2.09 | 0.79 | 0.77 | — | 4.0 | 0.003 | 0.67 | 0.0 | 0.12 | 12.85 | 0.00 | 1.905 | 10.25 | 0.25 | 5.4 | 94.6 | 0.0 | 1.46 | 1.49 | 0.79 | 0.79 | — | 34414 | 2452 | 4 | 0 | 0 | 0 | 16514 | logfile |
✔ | 7ZQE | 14872 | 2022-12-11 | 2022-04-29 | 2.55 | 3.20 | — | 2.5 | 0.002 | 0.42 | 0.0 | 0.05 | 7.04 | 0.01 | 2.076 | 4.21 | 0.00 | 1.0 | 99.0 | 0.0 | -0.73 | 0.36 | 0.50 | 3.22 | 2.9 | 0.002 | 0.52 | 0.0 | 0.04 | 10.05 | 0.00 | 2.097 | 7.02 | 0.00 | 3.1 | 96.9 | 0.0 | 0.37 | 0.86 | 0.37 | 0.55 | -0.06 | 1423 | 98 | 1 | 0 | 1 | 0 | 694 | logfile |
✔ | 7MJP | 23881 | 2022-12-13 | 2021-04-20 | 4.2 | 4.40 | — | 4.3 | 0.007 | 1.11 | 0.0 | 0.07 | 7.09 | 0.01 | 1.477 | 2.91 | 0.00 | 9.1 | 90.9 | 0.0 | -1.16 | 0.51 | 0.65 | — | 4.4 | 0.002 | 0.62 | 0.0 | 0.05 | 5.76 | 0.00 | 2.279 | 1.26 | 0.00 | 9.8 | 90.2 | 0.0 | -0.62 | 0.43 | 0.57 | 0.70 | — | 14163 | 2818 | 10 | 0 | 8 | 0 | 0 | logfile |
✔ | 6PLP | 20371 | 2022-12-13 | 2019-07-01 | 3.3 | 3.51 | — | 3.8 | 0.001 | 0.46 | 0.0 | 0.04 | 7.10 | 0.00 | 2.285 | 5.97 | 0.00 | 2.0 | 98.0 | 0.0 | -4.40 | 0.44 | 0.72 | 3.32 | 3.6 | 0.003 | 0.64 | 0.0 | 0.04 | 13.54 | 0.00 | 2.131 | 10.25 | 0.52 | 3.2 | 96.8 | 0.0 | -0.82 | 1.21 | 0.44 | 0.75 | 2.82 | 14240 | 1730 | 15 | 0 | 20 | 0 | 0 | logfile |
✔ | 6PLQ | 20372 | 2022-12-13 | 2019-07-01 | 3.4 | 4.30 | — | 4.3 | 0.001 | 0.46 | 0.0 | 0.04 | 7.10 | 0.00 | 2.285 | 5.97 | 0.00 | 2.0 | 98.0 | 0.0 | -4.40 | 0.57 | 0.36 | 0.62 | 3.9 | 0.003 | 0.94 | 0.0 | 0.05 | 14.68 | 0.00 | 2.145 | 15.13 | 0.52 | 3.9 | 96.1 | 0.0 | -1.13 | 1.75 | 0.72 | 0.76 | 1.14 | 14240 | 1730 | 15 | 0 | 20 | 0 | 0 | logfile |
✔ | 6KRE | 0757 | 2022-12-12 | 2019-08-21 | 4.45 | 4.34 | — | 4.4 | 0.001 | 0.39 | 0.0 | 0.04 | 7.11 | 0.00 | 2.244 | 6.14 | 0.03 | 4.1 | 95.8 | 0.1 | -3.50 | 0.61 | 0.56 | — | 4.4 | 0.003 | 0.69 | 0.0 | 0.04 | 12.31 | 0.00 | 2.098 | 13.62 | 0.00 | 3.7 | 96.3 | 0.1 | 0.06 | 1.83 | 0.67 | 0.65 | — | 60321 | 7922 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KS7 | 0759 | 2022-12-12 | 2019-08-23 | 4.62 | 4.57 | — | 4.5 | 0.001 | 0.39 | 0.0 | 0.04 | 7.11 | 0.00 | 2.241 | 5.80 | 0.00 | 4.3 | 95.7 | 0.0 | -3.50 | 0.70 | 0.62 | — | 4.5 | 0.004 | 0.76 | 0.0 | 0.05 | 12.15 | 0.00 | 2.078 | 18.53 | 0.03 | 4.3 | 95.6 | 0.1 | -0.34 | 1.90 | 0.75 | 0.69 | — | 62022 | 8131 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VXC | 32175 | 2022-12-21 | 2021-11-12 | 3.9 | 4.21 | — | 4.1 | 0.002 | 0.40 | 0.0 | 0.04 | 7.11 | 0.00 | 2.022 | 12.45 | 0.00 | 4.2 | 95.8 | 0.0 | -1.96 | 0.63 | 0.62 | 0.87 | 4.1 | 0.003 | 0.61 | 0.0 | 0.04 | 13.91 | 0.00 | 1.808 | 36.93 | 0.36 | 5.2 | 94.7 | 0.1 | -0.23 | 1.71 | 0.68 | 0.73 | 1.13 | 46264 | 3801 | 4 | 0 | 0 | 0 | 16332 | logfile |
✔ | 6KS8 | 0760 | 2022-12-12 | 2019-08-23 | 4.69 | 4.76 | — | 4.6 | 0.001 | 0.39 | 0.0 | 0.04 | 7.12 | 0.00 | 2.228 | 5.95 | 0.01 | 4.4 | 95.5 | 0.0 | -3.61 | 0.77 | 0.67 | — | 4.6 | 0.004 | 0.80 | 1.0 | 0.05 | 11.72 | 0.00 | 2.042 | 24.03 | 0.00 | 4.6 | 95.3 | 0.0 | -0.71 | 1.94 | 0.82 | 0.74 | — | 61943 | 8120 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RFP | 24444 | 2022-12-11 | 2021-07-14 | 4.4 | 4.57 | — | 4.3 | 0.014 | 2.06 | 8.0 | 0.12 | 7.12 | 0.01 | 1.581 | 3.60 | 8.00 | 9.5 | 87.5 | 3.0 | -1.46 | 0.68 | 0.61 | — | 4.3 | 0.004 | 0.91 | 0.0 | 0.04 | 6.89 | 0.00 | 2.185 | 8.70 | 0.00 | 15.2 | 84.3 | 0.5 | -4.03 | 1.49 | 0.80 | 0.75 | — | 5532 | 1114 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KRD | 0756 | 2022-12-12 | 2019-08-21 | 4.38 | 4.25 | — | 4.4 | 0.001 | 0.39 | 0.0 | 0.04 | 7.15 | 0.00 | 2.226 | 5.90 | 0.00 | 4.5 | 95.5 | 0.1 | -3.58 | 0.57 | 0.52 | — | 4.3 | 0.003 | 0.71 | 0.0 | 0.04 | 12.25 | 0.00 | 2.094 | 13.02 | 0.03 | 3.9 | 96.1 | 0.1 | -0.44 | 1.85 | 0.65 | 0.65 | — | 61005 | 8006 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VXA | 32173 | 2022-12-21 | 2021-11-12 | 3.9 | 4.16 | — | 4.1 | 0.002 | 0.41 | 0.0 | 0.04 | 7.17 | 0.00 | 2.017 | 13.02 | 0.00 | 4.3 | 95.7 | 0.0 | -1.90 | 0.60 | 0.60 | 0.95 | 4.0 | 0.003 | 0.58 | 0.0 | 0.04 | 13.72 | 0.00 | 1.935 | 31.14 | 0.33 | 4.3 | 95.7 | 0.1 | -0.47 | 1.71 | 0.65 | 0.72 | 1.00 | 46176 | 3795 | 4 | 0 | 0 | 0 | 16288 | logfile |