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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6Y50 | 10688 | 2023-08-13 | 2020-02-24 | 4.1 | 4.22 | — | 4.0 | 0.003 | 0.52 | 0.0 | 0.04 | 6.93 | 0.00 | 0.761 | 13.95 | 0.00 | 5.9 | 93.9 | 0.2 | -3.48 | 0.68 | 0.68 | — | 4.0 | 0.005 | 0.73 | 0.0 | 0.05 | 9.80 | 0.01 | 1.964 | 10.01 | 0.27 | 14.1 | 85.8 | 0.1 | -1.88 | 0.56 | 0.71 | 0.74 | — | 14916 | 2537 | 10 | 50 | 3 | 0 | 0 | logfile |
✘ | 6oLL | 20116 | 2023-08-16 | 2019-04-16 | 4.1 | 4.59 | — | 4.4 | 0.004 | 1.05 | 0.0 | 0.06 | 6.94 | 0.01 | 2.400 | 0.40 | 0.00 | 2.0 | 97.8 | 0.2 | -0.51 | 0.67 | 0.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10426 | 2114 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TKG | 25968 | 2023-08-16 | 2022-01-17 | 4.5 | 7.60 | 4.79 | 4.2 | 0.019 | 2.20 | 0.0 | 0.00 | 6.95 | 0.01 | 2.361 | 0.08 | 0.00 | 4.3 | 94.2 | 1.5 | -0.60 | 0.58 | 0.61 | — | 4.3 | 0.007 | 1.14 | 0.0 | 0.00 | 7.61 | 0.01 | 2.015 | 33.28 | 0.00 | 19.7 | 80.0 | 0.3 | -3.26 | 2.09 | 0.77 | 0.80 | — | 20228 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MHW | 9120 | 2023-08-22 | 2018-09-18 | 4.0 | 4.10 | 3.97 | 4.0 | 0.004 | 0.62 | 0.0 | 0.13 | 7.02 | 0.00 | 1.933 | 7.04 | 0.00 | 3.4 | 96.6 | 0.0 | -2.09 | 0.79 | 0.77 | — | 4.0 | 0.003 | 0.65 | 0.0 | 0.12 | 12.87 | 0.00 | 1.907 | 9.76 | 0.06 | 4.7 | 95.3 | 0.0 | 1.74 | 1.49 | 0.79 | 0.79 | — | 34414 | 2452 | 4 | 0 | 0 | 0 | 16514 | logfile |
✔ | 8DPL | 27637 | 2023-08-17 | 2022-07-15 | 2.53 | 3.55 | 2.56 | 3.0 | 0.002 | 0.48 | 0.0 | 0.04 | 7.10 | 0.00 | 2.277 | 3.90 | 0.00 | 2.5 | 97.5 | 0.0 | 1.13 | 0.90 | 0.87 | 4.07 | 3.1 | 0.005 | 0.76 | 0.0 | 0.04 | 13.49 | 0.01 | 2.155 | 9.21 | 2.03 | 3.5 | 96.5 | 0.0 | 0.37 | 1.58 | 0.89 | 0.88 | 4.05 | 16872 | 2163 | 21 | 0 | 21 | 0 | 0 | logfile |
✔ | 6KS7 | 0759 | 2023-08-12 | 2019-08-23 | 4.62 | 4.57 | — | 4.5 | 0.001 | 0.39 | 0.0 | 0.04 | 7.11 | 0.00 | 2.241 | 5.72 | 0.00 | 4.3 | 95.7 | 0.0 | -3.50 | 0.70 | 0.62 | — | 4.5 | 0.003 | 0.70 | 0.0 | 0.04 | 12.04 | 0.00 | 2.131 | 14.80 | 0.03 | 3.3 | 96.6 | 0.1 | -0.06 | 1.85 | 0.74 | 0.67 | — | 62022 | 8131 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KRE | 0757 | 2023-08-11 | 2019-08-21 | 4.45 | 4.34 | — | 4.4 | 0.001 | 0.39 | 0.0 | 0.04 | 7.11 | 0.00 | 2.244 | 6.04 | 0.03 | 4.1 | 95.8 | 0.1 | -3.50 | 0.61 | 0.56 | — | 4.4 | 0.003 | 0.68 | 0.0 | 0.04 | 11.97 | 0.00 | 2.090 | 13.71 | 0.03 | 3.5 | 96.4 | 0.1 | 0.20 | 1.80 | 0.67 | 0.64 | — | 60321 | 7922 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RFP | 24444 | 2023-08-09 | 2021-07-14 | 4.4 | 4.57 | — | 4.3 | 0.014 | 2.06 | 8.0 | 0.12 | 7.12 | 0.01 | 1.581 | 3.60 | 8.00 | 9.5 | 87.5 | 3.0 | -1.46 | 0.68 | 0.61 | — | 4.3 | 0.004 | 0.92 | 0.0 | 0.04 | 7.02 | 0.00 | 2.177 | 9.44 | 0.00 | 14.9 | 84.6 | 0.5 | -3.98 | 1.49 | 0.80 | 0.75 | — | 5532 | 1114 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PLQ | 20372 | 2023-08-13 | 2019-07-01 | 3.4 | 4.30 | — | 4.3 | 0.002 | 0.53 | 0.0 | 0.05 | 7.12 | 0.00 | 2.285 | 5.97 | 0.00 | 2.0 | 98.0 | 0.0 | -4.40 | 0.57 | 0.36 | 0.62 | 3.9 | 0.004 | 0.98 | 0.0 | 0.05 | 14.71 | 0.00 | 2.167 | 14.91 | 0.45 | 4.9 | 95.1 | 0.0 | -1.16 | 2.47 | 0.73 | 0.78 | 1.41 | 14240 | 1730 | 15 | 0 | 20 | 0 | 0 | logfile |
✔ | 6J2X | 9772 | 2023-08-09 | 2019-01-03 | 3.8 | 3.99 | — | 3.9 | 0.002 | 0.40 | 0.0 | 0.04 | 7.12 | 0.00 | 2.220 | 6.65 | 0.00 | 5.8 | 94.1 | 0.1 | -3.52 | 0.80 | 0.70 | 0.49 | 3.9 | 0.004 | 0.78 | 1.0 | 0.04 | 15.31 | 0.00 | 2.050 | 18.52 | 0.40 | 4.7 | 95.2 | 0.1 | -0.69 | 1.88 | 0.84 | 0.78 | 0.88 | 106176 | 13501 | 47 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PLP | 20371 | 2023-08-13 | 2019-07-01 | 3.3 | 3.51 | — | 3.8 | 0.002 | 0.53 | 0.0 | 0.05 | 7.12 | 0.00 | 2.285 | 5.97 | 0.00 | 2.0 | 98.0 | 0.0 | -4.40 | 0.44 | 0.72 | 3.32 | 3.6 | 0.003 | 0.64 | 0.0 | 0.04 | 13.56 | 0.00 | 2.129 | 9.93 | 0.19 | 3.4 | 96.6 | 0.0 | -0.70 | 1.66 | 0.42 | 0.72 | 2.82 | 14240 | 1730 | 15 | 0 | 20 | 0 | 0 | logfile |
✔ | 6KS8 | 0760 | 2023-08-11 | 2019-08-23 | 4.69 | 4.76 | — | 4.6 | 0.001 | 0.39 | 0.0 | 0.04 | 7.12 | 0.00 | 2.228 | 5.86 | 0.01 | 4.4 | 95.5 | 0.0 | -3.61 | 0.77 | 0.67 | — | 4.6 | 0.003 | 0.73 | 0.0 | 0.05 | 11.70 | 0.00 | 2.011 | 17.70 | 0.01 | 3.4 | 96.6 | 0.0 | -0.29 | 1.89 | 0.81 | 0.73 | — | 61943 | 8120 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KRD | 0756 | 2023-08-11 | 2019-08-21 | 4.38 | 4.25 | — | 4.4 | 0.001 | 0.39 | 0.0 | 0.04 | 7.15 | 0.00 | 2.226 | 5.80 | 0.00 | 4.5 | 95.5 | 0.1 | -3.58 | 0.57 | 0.52 | — | 4.3 | 0.003 | 0.67 | 0.0 | 0.04 | 11.93 | 0.00 | 2.014 | 12.31 | 0.01 | 3.2 | 96.7 | 0.1 | 0.08 | 1.78 | 0.62 | 0.58 | — | 61005 | 8006 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6J2Q | 9771 | 2023-08-09 | 2019-01-02 | 3.8 | 3.95 | — | 3.9 | 0.002 | 0.40 | 0.0 | 0.04 | 7.17 | 0.00 | 2.202 | 6.58 | 0.00 | 5.5 | 94.4 | 0.1 | -3.50 | 0.77 | 0.68 | 0.88 | 3.9 | 0.003 | 0.74 | 0.0 | 0.04 | 15.50 | 0.00 | 2.058 | 15.76 | 0.38 | 4.1 | 95.8 | 0.1 | -0.48 | 2.27 | 0.82 | 0.76 | 1.06 | 106311 | 13518 | 47 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WK3 | 32557 | 2023-08-18 | 2022-01-08 | 3.4 | 2.86 | — | 3.4 | 0.004 | 0.56 | 0.0 | 0.04 | 7.18 | 0.00 | 1.998 | 3.79 | 0.00 | 3.6 | 96.3 | 0.0 | -2.17 | 0.65 | 0.57 | 1.77 | 3.3 | 0.004 | 0.72 | 0.0 | 0.04 | 14.28 | 0.00 | 2.082 | 10.49 | 0.36 | 3.3 | 96.7 | 0.0 | -0.16 | 1.11 | 0.79 | 0.79 | 1.77 | 24805 | 3162 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VXB | 32174 | 2023-08-20 | 2021-11-12 | 3.9 | 4.21 | — | 4.1 | 0.002 | 0.41 | 0.0 | 0.04 | 7.20 | 0.00 | 2.045 | 12.33 | 0.00 | 4.1 | 95.8 | 0.0 | -1.93 | 0.60 | 0.62 | 0.94 | 4.1 | 0.007 | 0.88 | 0.0 | 0.05 | 14.42 | 0.01 | 1.887 | 22.12 | 0.75 | 4.9 | 95.0 | 0.1 | -0.50 | 1.20 | 0.67 | 0.76 | 0.98 | 29888 | 3795 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JG8 | 22314 | 2023-08-16 | 2020-07-18 | 3.3 | 2.35 | 3.37 | 3.3 | 0.009 | 1.50 | 0.0 | 0.20 | 7.20 | 0.01 | 2.424 | 0.51 | 0.00 | 3.2 | 96.6 | 0.2 | -1.30 | 0.62 | 0.55 | — | 2.2 | 0.003 | 0.83 | 0.0 | 0.08 | 5.44 | 0.00 | 2.294 | 0.43 | 0.00 | 8.9 | 91.0 | 0.1 | -0.55 | 1.25 | 0.72 | 0.71 | — | 19573 | 4827 | 26 | 0 | 7 | 0 | 0 | logfile |
✔ | 6DWB | 8924 | 2023-08-15 | 2018-06-26 | 3.3 | 3.43 | — | 3.4 | 0.007 | 0.66 | 0.0 | 0.04 | 7.21 | 0.01 | 2.161 | 2.34 | 0.00 | 5.1 | 94.9 | 0.0 | -6.22 | 0.61 | 0.75 | 2.51 | 3.4 | 0.003 | 0.49 | 0.0 | 0.03 | 13.59 | 0.00 | 2.142 | 4.35 | 0.10 | 3.6 | 96.4 | 0.0 | 4.58 | 1.15 | 0.75 | 0.90 | 2.83 | 18360 | 2340 | 30 | 0 | 0 | 0 | 0 | logfile |
✘ | 5GW4 | 9540 | 2023-08-12 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.49 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VXi | 32180 | 2023-08-18 | 2021-11-12 | 3.4 | 2.35 | — | 2.0 | 0.002 | 0.49 | 0.0 | 0.04 | 7.29 | 0.00 | 2.125 | 3.01 | 0.00 | 4.3 | 95.5 | 0.1 | -1.83 | 0.65 | 0.60 | 1.83 | 2.1 | 0.003 | 0.64 | 0.0 | 0.04 | 13.57 | 0.00 | 2.129 | 9.76 | 0.33 | 3.3 | 96.5 | 0.2 | 0.10 | 1.42 | 0.71 | 0.69 | 2.31 | 24570 | 3144 | 3 | 0 | 0 | 0 | 0 | logfile |