Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6MHo	9115	2023-02-28	2018-09-18	3.4	3.50	3.41	3.5	0.005	0.72	0.0	0.04	7.36	0.00	2.108	2.84	0.00	2.7	97.3	0.0	-2.41	0.66	0.76	3.45	3.4	0.003	0.55	0.0	0.03	12.70	0.00	2.003	6.04	0.14	4.5	95.5	0.0	0.98	2.46	0.68	0.81	3.70	32224	2404	4	0	0	0	15184	logfile
✘	5GW5	9541	2023-02-24	2016-09-08	4.6	4.75	—	4.7	0.002	0.58	0.0	0.04	7.37	0.00	2.136	6.87	0.01	4.5	95.4	0.1	-3.73	0.74	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✔	7X6L	33023	2023-02-23	2022-03-07	3.7	2.76	—	2.2	0.002	0.45	0.0	0.04	7.43	0.00	2.291	4.47	2.04	1.9	97.9	0.2	-3.07	0.64	0.56	0.95	2.2	0.005	0.88	0.0	0.05	13.83	0.01	2.086	23.90	0.75	6.8	93.1	0.1	-1.76	1.03	0.67	0.62	1.15	21486	2781	12	0	0	0	0	logfile
✔	7oZH	13124	2023-02-17	2021-06-28	3.02	3.20	1.84	3.3	0.024	1.40	0.0	0.09	7.44	0.01	2.546	14.72	0.00	5.4	94.6	0.0	-2.78	0.33	0.60	4.68	3.2	0.004	0.69	0.0	0.05	15.03	0.00	2.382	17.11	2.05	8.2	91.8	0.0	-2.61	2.53	0.40	0.69	0.33	3890	580	10	0	0	0	0	logfile
✔	7US9	26729	2023-02-16	2022-04-23	3.8	3.84	3.64	3.9	0.014	1.55	0.0	0.11	7.45	0.01	2.489	3.45	0.00	2.3	97.7	0.0	1.07	0.59	0.74	4.43	3.8	0.003	0.64	0.0	0.07	11.91	0.01	2.310	6.41	0.00	3.1	96.9	0.0	0.49	1.44	0.60	0.77	2.98	1127	145	3	0	4	0	0	logfile
✔	7VX1	32167	2023-02-25	2021-11-12	3.5	2.44	—	3.4	0.002	0.49	1.0	0.04	7.46	0.00	1.753	8.22	0.00	4.3	95.7	0.1	-2.11	0.63	0.59	1.22	2.1	0.003	0.65	0.0	0.04	13.20	0.00	2.098	11.64	0.11	3.0	96.9	0.0	-0.65	1.38	0.66	0.64	1.34	25362	3237	3	0	0	0	0	logfile
✔	7JG9	22315	2023-02-23	2020-07-18	3.4	2.37	3.49	3.4	0.009	1.55	0.0	0.20	7.47	0.01	2.424	0.51	0.00	2.9	96.8	0.3	-1.25	0.61	0.54	—	2.2	0.006	1.13	0.0	0.09	7.67	0.01	2.199	4.49	0.00	16.5	83.4	0.1	-2.00	1.33	0.72	0.71	—	19569	4826	26	0	7	0	0	logfile
✔	6E9Y	9020	2023-02-21	2018-08-01	4.3	4.50	—	4.3	0.008	0.73	0.0	0.04	7.51	0.00	1.433	25.35	0.00	3.1	96.9	0.0	-3.58	0.75	0.80	—	4.3	0.005	0.58	0.0	0.03	11.10	0.00	2.001	10.39	0.00	1.7	98.3	0.0	1.61	1.51	0.76	0.82	—	54450	3405	15	0	0	0	28155	logfile
✔	6XLH	22244	2023-02-21	2020-06-28	2.83	2.93	—	2.9	0.001	0.39	0.0	0.04	7.54	0.00	2.093	5.99	0.13	1.5	98.5	0.0	-3.84	0.73	0.80	3.26	2.9	0.004	0.62	0.0	0.04	16.39	0.00	1.913	9.37	1.67	3.1	96.9	0.0	-0.57	0.88	0.77	0.88	3.86	13608	1675	6	0	6	0	0	logfile
✔	6ZD0	11172	2023-02-18	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	4.5	0.003	0.78	0.0	0.04	5.38	0.00	2.341	5.89	0.00	15.0	84.6	0.4	-4.68	2.32	0.61	0.58	—	7962	1611	6	0	0	0	0	logfile
✔	6MHX	9121	2023-02-27	2018-09-18	4.0	4.20	3.97	4.1	0.004	0.67	0.0	0.04	7.56	0.00	2.077	6.96	0.30	3.1	96.9	0.0	-2.52	0.77	0.76	—	4.0	0.002	0.54	0.0	0.03	12.01	0.00	1.949	10.47	0.15	4.4	95.6	0.0	2.37	0.98	0.78	0.78	—	31612	2436	4	0	0	0	14648	logfile
✔	5VoT	8721	2023-02-22	2017-05-03	4.9	4.98	—	4.9	0.004	0.67	0.0	0.04	7.57	0.00	2.126	11.91	0.00	8.5	91.5	0.0	-4.03	0.63	0.71	—	4.9	0.003	0.69	0.0	0.04	11.01	0.00	2.137	14.03	0.00	6.3	93.7	0.0	0.08	0.85	0.65	0.80	—	16463	2322	8	0	0	0	0	logfile
✔	7T8C	25744	2023-02-26	2021-12-16	4.5	3.21	4.51	4.6	0.001	0.42	0.0	0.04	7.59	0.00	2.347	5.08	0.41	3.6	96.4	0.0	0.76	0.63	0.54	—	4.2	0.002	0.64	0.0	0.04	10.96	0.00	2.130	10.96	0.00	4.6	95.4	0.0	0.62	1.08	0.66	0.61	—	28952	3626	7	0	0	0	0	logfile
✔	5N8Y	3602	2023-02-24	2017-02-24	4.7	4.76	—	4.7	0.017	2.39	6.0	0.08	7.59	0.01	0.788	16.57	0.00	4.2	94.4	1.4	-1.65	0.65	0.64	—	4.7	0.003	0.79	0.0	0.04	5.73	0.00	2.234	3.43	0.00	9.5	90.4	0.0	-1.95	3.82	0.74	0.79	—	23514	4752	24	0	0	0	0	logfile
✔	7BZY	30263	2023-02-17	2020-04-29	3.7	5.07	3.67	2.9	0.005	1.03	0.0	0.05	7.60	0.00	2.175	11.89	0.00	15.0	84.6	0.3	-5.26	0.62	0.47	—	3.4	0.003	0.82	0.0	0.05	6.08	0.00	2.106	13.54	0.00	14.3	85.7	0.0	-3.30	1.23	0.85	0.74	—	6169	1260	3	0	0	0	0	logfile
✔	7MVZ	24059	2023-02-25	2021-05-15	2.81	3.64	2.78	3.1	0.002	0.48	0.0	0.03	7.60	0.00	2.206	2.84	0.00	1.6	98.4	0.0	-1.11	0.80	0.67	0.58	3.2	0.004	0.66	0.0	0.04	14.27	0.00	1.969	15.82	2.27	4.4	95.6	0.0	0.87	1.86	0.84	0.76	1.43	26733	1707	3	0	0	0	13421	logfile
✔	7DF4	30661	2023-02-27	2020-11-06	3.8	3.53	—	3.3	0.003	0.54	0.0	0.05	7.61	0.02	1.519	10.91	0.21	4.2	95.7	0.1	-2.40	0.73	0.56	1.15	3.3	0.010	0.71	0.0	0.05	14.25	0.00	2.101	17.56	0.51	4.2	95.7	0.1	-0.71	1.78	0.77	0.65	1.07	30920	3798	25	0	72	0	0	logfile
✔	6A6B	6988	2023-02-17	2018-06-27	3.07	3.41	2.07	3.4	0.006	1.07	0.0	0.07	7.61	0.00	2.263	7.15	0.00	11.3	88.7	0.0	-3.85	0.53	0.71	3.91	3.4	0.006	0.78	0.0	0.05	13.53	0.00	2.139	17.09	0.37	10.4	89.6	0.0	-2.88	2.17	0.52	0.71	2.87	5256	756	12	0	0	0	0	logfile
✔	7WDF	32437	2023-02-28	2021-12-21	3.9	4.20	—	4.0	0.002	0.51	0.0	0.04	7.63	0.00	2.170	7.44	0.00	4.3	95.6	0.1	-1.73	0.54	0.40	0.73	4.0	0.003	0.79	0.0	0.05	14.33	0.00	2.088	18.37	0.45	4.6	95.4	0.0	-0.96	1.62	0.76	0.71	0.54	31998	4101	7	0	0	0	0	logfile
✔	6D7L	7823	2023-02-19	2018-04-25	4.0	4.10	3.93	3.9	0.004	0.86	0.0	0.05	7.65	0.01	2.273	4.18	0.00	8.5	91.5	0.0	-3.90	0.73	0.72	—	3.9	0.004	0.88	0.0	0.04	15.24	0.00	2.179	17.08	0.98	11.4	88.6	0.0	-0.47	3.01	0.76	0.75	—	9172	1152	4	0	0	0	0	logfile

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