Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5US7	8604	2021-09-17	2017-02-13	2.8	3.07	—	3.9	0.010	1.15	0.0	0.07	10.63	0.01	1.998	25.45	0.00	15.6	82.1	2.4	-3.94	0.36	0.29	-0.07	3.0	0.008	1.13	0.0	0.05	16.93	0.01	1.758	21.09	2.67	15.0	83.0	1.9	-2.60	1.63	0.71	0.84	3.68	242340	30360	60	0	0	0	0	logfile
✔	6Z5U	11082	2021-09-03	2020-05-27	3.9	4.52	—	38.0	0.021	1.87	10.0	0.11	12.07	0.01	0.901	4.64	1.69	2.0	97.7	0.3	-0.47	0.18	0.03	-0.06	4.5	0.011	1.19	1.0	0.04	15.11	0.00	1.777	21.08	0.15	6.6	93.4	0.0	-0.84	1.34	0.32	0.24	0.57	17880	2334	14	0	4	0	0	logfile
✔	5MPP	3538	2021-09-04	2016-12-17	3.9	4.03	—	4.1	0.009	1.02	0.0	0.06	14.77	0.01	2.456	7.21	5.00	5.3	94.7	0.0	-3.86	0.58	0.49	-0.06	4.0	0.004	0.75	0.0	0.05	17.74	0.01	2.070	13.09	0.94	4.1	95.9	0.0	0.45	4.05	0.83	0.86	0.80	70560	9240	60	0	0	0	0	logfile
✔	6SXA	10337	2021-09-02	2019-09-25	3.6	5.82	4.21	4.6	0.010	1.37	5.0	0.09	15.20	0.01	2.245	14.89	3.18	10.9	88.9	0.2	-4.66	0.83	0.67	-0.05	4.6	0.003	0.81	0.0	0.04	14.91	0.00	2.251	11.17	0.00	4.9	95.0	0.1	-0.29	1.81	0.91	0.83	0.41	7014	943	2	0	0	0	0	logfile
✔	5VZL	8749	2021-09-03	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	14.28	0.01	2.216	7.72	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	12.0	0.007	1.15	0.0	0.05	17.13	0.01	1.148	28.34	0.42	9.1	90.9	0.0	-3.06	2.31	0.43	0.25	0.54	13915	1451	3	115	1	0	0	logfile
✔	7oPE	13017	2021-09-06	2021-05-31	3.2	5.30	3.21	5.0	0.011	1.04	2.0	0.06	15.48	0.01	1.028	4.79	0.23	8.2	91.6	0.2	-3.62	0.89	0.72	-0.03	5.0	0.008	0.82	1.0	0.04	17.72	0.01	1.527	34.47	0.97	7.1	92.8	0.1	-1.69	2.00	0.93	0.87	0.28	93862	3818	33	2996	0	0	0	logfile
✔	5LKH	4068	2021-09-06	2016-07-22	3.46	5.27	—	11.0	0.018	2.37	65.0	0.12	12.66	0.02	2.255	85.51	1.96	3.4	95.2	1.4	-0.27	0.38	0.17	-0.03	4.4	0.004	0.82	0.0	0.04	15.63	0.01	2.059	26.51	0.27	6.4	93.5	0.0	-0.75	2.44	0.40	0.25	0.18	37345	4740	5	0	0	0	0	logfile
✔	6JCR	9795	2021-09-19	2019-01-30	3.07	3.19	—	3.6	0.009	1.12	0.0	0.06	10.94	0.01	0.548	52.93	0.44	6.4	93.6	0.0	-3.60	0.44	0.29	-0.03	3.1	0.004	0.67	0.0	0.04	15.47	0.00	2.097	12.54	0.36	5.2	94.8	0.0	-1.58	1.10	0.82	0.88	4.02	246720	31080	60	0	0	0	0	logfile
✔	7D58	30577	2021-09-06	2020-09-25	2.9	3.51	—	5.3	0.002	0.66	0.0	0.54	13.94	0.00	2.139	8.18	0.09	5.8	94.2	0.0	-3.64	0.55	0.24	-0.02	3.3	0.007	1.30	0.0	0.17	18.04	0.01	2.038	16.93	3.12	7.1	92.8	0.0	-1.61	2.66	0.83	0.85	1.66	40568	4980	26	46	8	0	0	logfile
✔	3J7A	2660	2021-09-04	2014-06-03	3.2	3.24	3.33	3.2	0.008	1.40	49.0	0.10	19.80	0.01	1.715	4.44	15.41	10.5	85.4	4.2	-2.49	0.31	0.55	-0.02	3.2	0.005	0.76	0.0	0.04	18.10	0.01	1.711	18.65	0.14	7.9	90.9	1.2	-1.54	2.71	0.40	0.78	1.14	68866	4106	35	1682	69	0	0	logfile
✘	3J5Q	5776	2021-09-04	2013-10-28	3.8	4.64	—	7.1	0.010	1.45	0.0	0.09	20.92	0.01	0.275	102.90	29.72	6.4	93.1	0.5	-0.53	0.58	0.44	-0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18264	2324	8	0	168	0	0	logfile
✘	6RBE	4794	2021-09-04	2019-04-10	3.8	4.03	3.73	40.0	0.007	1.27	0.0	0.06	18.44	0.01	2.076	9.09	1.35	11.9	86.8	1.2	-4.17	0.25	0.03	0.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72721	4512	33	1750	0	0	0	logfile
✔	6RWE	10038	2021-09-02	2019-06-04	3.0	3.12	—	3.7	0.009	1.02	1.0	0.06	13.12	0.01	1.975	6.72	0.73	7.4	92.5	0.1	-4.84	0.44	0.32	0.00	3.1	0.009	1.00	3.0	0.05	18.19	0.01	1.945	17.00	3.11	5.7	94.2	0.0	-1.64	1.49	0.76	0.79	1.54	53719	6454	26	95	8	0	0	logfile
✔	6EK0	3883	2021-09-12	2017-09-24	2.9	3.27	—	40.0	0.012	1.13	0.0	0.06	16.18	0.03	0.883	4.05	0.81	9.4	90.4	0.3	-5.00	0.02	0.00	0.01	3.2	0.004	0.83	2.0	0.03	17.28	0.01	1.254	15.49	2.44	8.1	91.9	0.0	-2.27	1.74	0.11	0.15	0.16	219596	11719	128	5861	415	61	0	logfile
✔	6CRZ	7577	2021-09-04	2018-03-19	3.3	3.42	3.35	4.5	0.007	0.96	0.0	0.06	9.21	0.01	2.254	6.75	0.04	7.8	92.2	0.0	-4.10	0.39	0.17	0.01	3.3	0.006	0.86	2.0	0.04	13.52	0.01	1.992	14.39	0.11	5.2	94.8	0.0	-1.55	1.59	0.65	0.65	0.93	25909	3205	6	0	66	0	0	logfile
✔	6QYM	4679	2021-09-04	2019-03-09	3.6	3.25	—	4.0	0.007	0.89	0.0	0.05	9.66	0.01	2.201	8.77	0.00	6.5	93.5	0.0	-4.63	0.62	0.60	0.02	3.5	0.005	0.96	0.0	0.05	17.72	0.01	2.069	26.41	0.89	4.9	95.1	0.0	-0.92	2.40	0.69	0.67	-0.23	26880	3360	12	0	0	0	0	logfile
✔	6TZ4	20588	2021-09-07	2019-08-10	3.2	3.81	3.16	3.7	0.010	0.48	0.0	0.04	8.47	0.00	2.212	3.81	0.00	1.4	98.6	0.0	-0.10	0.51	0.57	0.03	3.6	0.005	0.90	0.0	0.04	17.66	0.00	2.021	18.15	0.90	1.7	98.3	0.0	2.72	1.71	0.60	0.85	0.53	99216	12852	72	0	0	0	0	logfile
✔	6oiG	20077	2021-09-05	2019-04-09	3.8	5.08	—	5.0	0.011	1.45	2.0	0.07	19.62	0.01	0.087	53.41	1.20	15.9	83.9	0.2	-5.09	0.77	0.48	0.04	4.9	0.010	0.98	5.0	0.05	18.66	0.01	1.449	32.39	1.00	13.2	86.6	0.2	-2.71	3.79	0.90	0.86	0.06	129140	6757	48	3522	116	0	0	logfile
✔	6K9F	9948	2021-09-03	2019-06-15	3.7	7.50	4.15	7.2	0.002	0.45	0.0	0.03	11.87	0.00	2.356	5.29	0.00	0.0	100.0	0.0	-0.68	0.66	0.76	0.04	4.6	0.004	1.17	0.0	0.05	17.64	0.00	2.051	25.98	0.74	1.3	98.7	0.0	-0.82	3.90	0.68	0.84	0.15	8484	1044	12	0	0	0	0	logfile
✔	6XSS	22305	2021-09-02	2020-07-16	3.7	3.37	—	3.3	0.003	0.63	0.0	0.04	12.31	0.00	1.843	28.15	0.00	2.5	97.5	0.0	-0.32	0.74	0.78	0.04	3.3	0.016	1.55	0.0	0.04	17.50	0.01	2.308	17.36	0.24	1.0	99.0	0.0	2.38	1.34	0.75	0.79	0.22	8048	1040	4	0	0	0	0	logfile

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