Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7R4R	14315	2022-07-08	2022-02-09	3.9	4.20	—	6.8	0.036	4.11	135.0	0.31	17.82	0.03	1.228	59.98	7.44	8.5	91.3	0.2	-3.20	0.62	0.41	-0.13	5.7	0.006	1.43	17.0	0.24	16.68	0.01	1.806	37.66	1.60	10.6	89.3	0.1	-2.66	1.29	0.68	0.61	-0.13	50505	3293	12	0	43	0	24171	logfile
✔	6UMM	20820	2022-07-05	2019-10-09	3.7	6.74	4.15	4.0	0.006	0.79	0.0	0.04	13.23	0.00	2.203	12.00	0.17	4.8	95.2	0.0	-2.07	0.55	0.56	-0.10	4.1	0.004	0.92	0.0	0.05	14.46	0.00	2.056	24.51	0.70	4.4	95.6	0.0	0.76	1.20	0.62	0.83	0.32	23658	3184	10	0	0	0	0	logfile
✔	6SSJ	10295	2022-07-07	2019-09-08	2.75	3.13	—	3.2	0.016	1.23	0.0	0.08	12.91	0.01	1.227	9.87	0.54	3.2	96.8	0.0	-4.66	0.49	0.47	-0.09	3.1	0.008	0.95	0.0	0.04	17.51	0.01	1.812	8.36	1.71	2.5	97.2	0.2	-0.53	1.65	0.66	0.82	2.34	104100	13320	60	0	0	0	0	logfile
✔	5G2X	3331	2022-07-04	2016-04-16	3.8	3.49	—	3.4	0.001	0.31	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.004	0.76	0.0	0.04	17.15	0.01	1.994	28.48	0.45	18.5	80.5	1.1	-4.42	1.71	0.79	0.64	0.68	19072	487	3	704	0	0	0	logfile
✔	7UHB	26511	2022-07-02	2022-03-26	3.0	3.17	2.97	3.2	0.011	1.35	3.0	0.12	9.86	0.00	2.562	5.08	1.42	3.0	96.6	0.4	-0.52	0.52	0.54	-0.09	3.1	0.003	0.62	0.0	0.04	16.15	0.00	2.244	9.43	1.90	3.4	96.6	0.0	0.52	2.43	0.70	0.83	3.49	2141	270	3	0	3	0	0	logfile
✔	6U0M	20607	2022-07-07	2019-08-14	3.9	4.53	—	4.3	0.005	1.05	2.0	0.06	16.74	0.01	2.211	9.82	0.47	13.2	86.7	0.2	-5.28	0.81	0.63	-0.08	4.3	0.003	0.81	0.0	0.04	17.45	0.00	2.127	15.02	0.34	9.7	90.3	0.0	-2.86	1.80	0.87	0.78	0.25	41146	5105	16	34	3	0	0	logfile
✔	6KKR	0701	2022-07-03	2019-07-27	2.9	2.91	—	20.0	0.008	1.10	0.0	0.06	10.99	0.01	2.348	3.23	0.23	3.9	96.1	0.0	-3.53	0.05	0.00	-0.07	2.8	0.003	0.77	0.0	0.04	13.11	0.00	2.105	13.63	2.15	4.1	95.9	0.0	0.35	1.64	0.12	0.11	0.38	8416	1074	4	0	24	0	0	logfile
✔	6Z5U	11082	2022-07-04	2020-05-27	3.9	4.52	—	38.0	0.021	1.88	10.0	0.11	11.93	0.01	0.901	4.94	1.69	2.0	97.7	0.3	-0.47	0.18	0.03	-0.06	4.1	0.008	0.89	1.0	0.04	14.43	0.01	2.092	11.99	0.15	4.7	95.2	0.0	-0.06	1.51	0.27	0.13	0.35	17880	2334	14	0	4	0	0	logfile
✔	5MPP	3538	2022-07-04	2016-12-17	3.9	4.03	—	4.1	0.009	1.02	0.0	0.06	14.77	0.01	2.456	7.21	5.00	5.3	94.7	0.0	-3.86	0.58	0.49	-0.06	4.0	0.006	0.86	0.0	0.05	17.83	0.01	2.129	14.86	1.18	5.6	94.4	0.0	-0.23	3.97	0.83	0.87	0.91	70560	9240	60	0	0	0	0	logfile
✔	7R4Q	14314	2022-07-08	2022-02-09	3.6	3.14	—	5.7	0.022	3.25	109.0	0.39	15.94	0.02	1.450	30.29	3.30	8.7	91.1	0.2	-2.35	0.48	0.21	-0.05	4.0	0.004	1.02	5.0	0.17	15.72	0.01	1.727	21.94	0.57	6.4	93.6	0.0	-1.97	1.67	0.62	0.56	0.48	51420	3414	13	0	43	0	24182	logfile
✔	6SXA	10337	2022-07-03	2019-09-25	3.6	5.82	4.21	4.6	0.010	1.37	5.0	0.09	15.20	0.01	2.245	15.33	3.18	10.9	88.9	0.2	-4.66	0.83	0.67	-0.05	4.6	0.003	0.82	0.0	0.04	15.05	0.00	2.275	11.82	0.14	5.7	94.2	0.1	-0.22	1.72	0.91	0.85	0.41	7014	943	2	0	0	0	0	logfile
✔	7NZM	12665	2022-07-03	2021-03-24	3.96	6.56	4.22	4.2	0.007	1.12	0.0	0.06	13.92	0.01	1.774	11.33	0.00	3.8	96.2	0.0	-1.56	0.77	0.51	-0.04	4.3	0.003	0.72	0.0	0.04	14.93	0.00	2.028	16.63	0.21	2.4	97.6	0.0	0.49	1.48	0.94	0.84	0.23	9109	1157	8	0	4	0	0	logfile
✔	5LKH	4068	2022-07-07	2016-07-22	3.46	5.27	—	11.0	0.018	2.37	65.0	0.12	12.66	0.02	2.255	87.25	1.96	3.4	95.2	1.4	-0.27	0.38	0.17	-0.03	8.8	0.004	0.83	0.0	0.04	15.55	0.01	2.085	26.64	0.22	6.6	93.4	0.0	-0.75	2.06	0.50	0.56	0.33	37345	4740	5	0	0	0	0	logfile
✔	5VZL	8749	2022-07-04	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	14.28	0.01	2.216	7.76	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	17.0	0.010	1.23	1.0	0.05	16.68	0.01	1.239	23.62	0.25	9.1	90.9	0.0	-2.51	2.13	0.41	0.22	0.62	13915	1451	3	115	1	0	0	logfile
✘	7ASN	11901	2022-07-05	2020-10-27	2.73	4.10	—	3.0	0.008	1.04	0.0	0.06	18.86	0.01	1.250	13.57	0.48	11.3	88.6	0.1	-3.27	0.46	0.23	-0.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	80694	2545	25	2848	0	0	0	logfile
✔	7oPE	13017	2022-07-06	2021-05-31	3.2	5.30	3.21	5.0	0.011	1.04	2.0	0.06	15.48	0.01	1.028	4.88	0.23	8.2	91.6	0.2	-3.62	0.89	0.72	-0.03	5.0	0.006	0.81	1.0	0.04	17.27	0.01	1.504	31.70	0.93	8.2	91.7	0.1	-1.76	1.09	0.93	0.87	0.28	93862	3818	33	2996	0	0	0	logfile
✔	7Q1Z	13776	2022-07-05	2021-10-22	3.4	2.41	—	4.0	0.003	0.55	0.0	0.04	12.53	0.00	2.074	6.33	0.04	2.2	97.8	0.0	0.60	0.48	0.31	-0.02	2.2	0.005	0.79	0.0	0.05	16.02	0.01	2.100	11.70	0.74	3.3	96.7	0.0	-0.15	1.59	0.75	0.75	1.53	23694	2916	21	0	63	0	0	logfile
✔	7D58	30577	2022-07-07	2020-09-25	2.9	3.51	—	5.3	0.002	0.66	0.0	0.54	13.94	0.00	2.139	8.38	0.09	5.8	94.2	0.0	-3.64	0.55	0.24	-0.02	3.4	0.007	1.28	0.0	0.17	17.71	0.01	2.066	17.56	2.77	6.8	93.2	0.0	-1.95	1.85	0.76	0.69	0.77	40568	4980	26	46	8	0	0	logfile
✔	3J7A	2660	2022-07-04	2014-06-03	3.2	3.24	3.33	3.2	0.008	1.39	49.0	0.10	19.81	0.01	1.715	4.58	15.41	10.5	85.4	4.2	-2.49	0.31	0.55	-0.02	3.2	0.004	0.74	0.0	0.04	18.16	0.01	1.853	17.51	0.94	8.9	89.8	1.2	-1.90	2.71	0.39	0.76	1.01	68866	4106	35	1682	69	0	0	logfile
✔	7QWS	14193	2022-07-06	2022-01-25	3.4	3.09	—	7.2	0.002	0.46	0.0	0.03	14.64	0.00	2.011	9.49	1.65	3.7	96.3	0.0	0.47	0.23	0.02	-0.02	3.0	0.008	1.22	3.0	0.06	19.93	0.01	0.959	37.21	0.73	12.5	87.4	0.1	-3.55	1.98	0.49	0.54	0.44	137913	7047	55	3769	126	0	0	logfile

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