Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LJ3	23388	2023-11-19	2021-01-28	2.9	2.92	—	3.4	0.005	0.72	0.0	0.04	17.12	0.00	1.041	27.61	3.30	3.6	96.0	0.4	0.29	0.10	0.23	-0.14	2.9	0.003	0.59	0.0	0.03	19.31	0.00	2.040	7.81	4.60	4.6	95.3	0.1	2.57	1.43	0.22	0.78	1.66	25714	2564	12	225	0	0	0	logfile
✔	7PC2	13316	2023-11-19	2021-08-03	2.8	3.39	—	6.5	0.033	1.66	5.0	0.06	15.68	0.01	1.809	9.01	1.49	7.8	92.2	0.0	-3.81	0.43	0.05	-0.14	3.1	0.005	1.10	2.0	0.06	17.89	0.01	1.959	19.86	4.47	7.3	92.7	0.0	-2.01	1.76	0.68	0.63	1.39	27063	3093	68	0	210	0	0	logfile
✘	8EAo	27792	2023-11-18	2022-08-29	3.2	4.04	3.15	20.0	0.003	0.60	0.0	0.05	14.09	0.00	2.197	10.56	0.10	3.6	96.4	0.0	1.03	0.18	0.04	-0.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	71628	8964	24	0	0	0	0	logfile
✔	7VZF	32227	2023-11-13	2021-11-16	2.95	2.71	—	3.0	0.009	1.06	0.0	0.06	16.23	0.01	1.971	38.45	0.00	26.5	73.5	0.0	-5.56	0.30	0.43	-0.13	2.8	0.005	0.93	0.0	0.05	18.70	0.00	2.192	14.23	5.32	20.2	79.8	0.0	-4.30	1.92	0.37	0.63	-0.01	2628	363	3	0	0	0	0	logfile
✔	8E55	27903	2023-11-15	2022-08-19	3.85	4.07	3.34	4.0	0.007	0.67	0.0	0.03	12.36	0.00	2.252	3.39	0.50	2.5	97.5	0.0	1.17	0.66	0.60	-0.11	4.0	0.003	0.55	0.0	0.03	16.13	0.00	2.262	10.49	0.00	1.8	98.2	0.0	4.40	1.43	0.69	0.70	-0.11	12176	780	4	0	0	0	6104	logfile
✘	6UMM	20820	2023-11-18	2019-10-09	3.7	6.74	4.15	4.0	0.006	0.79	0.0	0.04	13.23	0.00	2.203	11.97	0.17	4.8	95.2	0.0	-2.07	0.55	0.56	-0.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23658	3184	10	0	0	0	0	logfile
✔	5G2X	3331	2023-11-17	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.006	0.93	0.0	0.04	19.63	0.01	1.935	41.01	0.91	20.6	78.2	1.3	-4.93	2.35	0.80	0.66	0.49	19072	487	3	704	0	0	0	logfile
✔	7UHB	26511	2023-11-13	2022-03-26	3.0	3.17	2.97	3.2	0.011	1.36	3.0	0.12	9.92	0.00	2.562	5.08	1.42	3.0	96.6	0.4	-0.52	0.52	0.54	-0.09	3.2	0.003	0.61	0.0	0.04	16.83	0.00	2.223	8.94	2.84	3.0	97.0	0.0	0.69	2.47	0.69	0.83	3.49	2141	270	3	0	3	0	0	logfile
✔	6Z5U	11082	2023-11-17	2020-05-27	3.9	4.52	—	38.0	0.021	1.88	10.0	0.11	11.91	0.01	0.901	4.89	1.69	2.0	97.7	0.3	-0.47	0.18	0.03	-0.06	4.1	0.003	0.71	0.0	0.04	14.35	0.00	2.124	12.51	0.36	5.1	94.9	0.0	-0.25	1.55	0.28	0.16	0.60	17880	2334	14	0	4	0	0	logfile
✔	6SXA	10337	2023-11-14	2019-09-25	3.6	5.82	4.21	4.6	0.010	1.37	5.0	0.09	15.20	0.01	2.245	15.25	3.18	10.9	88.9	0.2	-4.66	0.83	0.67	-0.05	4.6	0.003	0.83	0.0	0.04	15.04	0.00	2.240	11.90	0.00	6.0	93.9	0.1	-0.30	1.73	0.91	0.85	0.41	7014	943	2	0	0	0	0	logfile
✔	8GWG	34312	2023-11-18	2022-09-17	3.37	3.96	3.48	7.9	0.009	0.94	5.0	0.06	17.82	0.01	2.045	13.54	5.14	8.4	91.2	0.4	-1.94	0.59	0.16	-0.05	3.4	0.003	0.80	0.0	0.04	17.21	0.00	2.091	18.31	0.61	7.5	92.2	0.3	-1.79	1.70	0.76	0.60	0.23	21955	2668	13	52	9	1	0	logfile
✔	7NZM	12665	2023-11-14	2021-03-24	3.96	6.56	4.22	4.2	0.007	1.12	0.0	0.06	13.94	0.01	1.774	11.10	0.00	3.8	96.2	0.0	-1.56	0.77	0.51	-0.04	4.3	0.003	0.74	0.0	0.04	15.04	0.00	2.061	18.47	0.21	2.9	97.1	0.0	0.28	1.50	0.94	0.84	0.28	9109	1157	8	0	4	0	0	logfile
✔	5VZL	8749	2023-11-16	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	14.28	0.01	2.216	7.72	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	15.0	0.004	0.84	0.0	0.04	16.50	0.00	1.185	19.55	0.50	8.3	91.7	0.0	-2.28	2.17	0.41	0.23	0.55	13915	1451	3	115	1	0	0	logfile
✔	7oPE	13017	2023-11-21	2021-05-31	3.2	5.30	3.21	5.0	0.011	1.04	2.0	0.06	15.48	0.01	1.028	4.81	0.23	8.2	91.6	0.2	-3.62	0.89	0.72	-0.03	5.0	0.003	0.73	0.0	0.04	17.34	0.01	2.040	25.18	1.03	6.9	92.9	0.1	-1.63	1.99	0.93	0.87	0.28	93862	3818	33	2996	0	0	0	logfile
✔	8HAo	34598	2023-11-17	2022-10-26	3.76	3.06	3.49	3.8	0.003	0.50	0.0	0.04	15.90	0.00	1.785	5.73	0.40	2.9	96.9	0.2	1.91	0.58	0.52	-0.03	3.8	0.004	0.87	0.0	0.05	17.30	0.00	2.050	18.94	0.80	4.4	95.6	0.1	0.27	1.23	0.65	0.69	0.83	18479	2314	12	0	0	0	0	logfile
✔	3J7A	2660	2023-11-17	2014-06-03	3.2	3.24	3.33	3.2	0.008	1.39	49.0	0.10	19.81	0.01	1.715	4.56	15.41	10.5	85.4	4.2	-2.49	0.31	0.55	-0.02	3.2	0.005	0.78	0.0	0.04	18.32	0.01	1.844	18.64	0.91	9.4	89.4	1.2	-2.11	2.71	0.40	0.77	0.99	68866	4106	35	1682	69	0	0	logfile
✔	8ERL	28554	2023-11-14	2022-10-12	3.9	4.58	3.40	4.1	0.005	1.28	0.0	0.07	15.42	0.01	2.296	4.84	0.27	9.5	90.5	0.0	-3.82	0.86	0.76	-0.02	4.1	0.003	0.78	0.0	0.04	15.62	0.00	2.101	21.34	0.27	9.5	90.5	0.0	-2.63	1.05	0.87	0.78	-0.50	6600	830	2	0	0	0	0	logfile
✔	7Q1Z	13776	2023-11-18	2021-10-22	3.4	2.41	—	4.0	0.004	0.61	0.0	0.04	12.71	0.00	2.074	6.27	0.04	2.2	97.8	0.0	0.60	0.48	0.31	-0.02	2.1	0.006	0.85	0.0	0.05	15.89	0.01	2.073	12.66	0.94	4.4	95.6	0.0	-0.31	1.64	0.75	0.76	1.74	23694	2916	21	0	63	0	0	logfile
✔	7TR8	26082	2023-11-21	2022-01-28	3.6	4.39	—	4.1	0.002	0.54	0.0	0.04	14.37	0.00	2.037	11.91	0.03	7.5	92.2	0.4	-1.00	0.75	0.46	-0.02	4.1	0.003	0.85	0.0	0.05	16.82	0.01	2.069	23.21	0.26	7.9	91.8	0.3	-1.86	2.22	0.83	0.71	0.38	33581	4192	18	45	2	0	0	logfile
✘	7ZNK	14804	2023-11-20	2022-04-21	3.9	6.01	—	7.4	0.006	0.88	2.0	0.05	11.83	0.01	1.707	9.96	5.83	6.4	93.3	0.3	-2.12	0.73	0.46	0.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	88261	11599	32	6	0	0	0	logfile

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