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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6UMM | 20820 | 2022-05-15 | 2019-10-09 | 3.7 | 6.74 | 4.15 | 4.0 | 0.006 | 0.79 | 0.0 | 0.04 | 13.23 | 0.00 | 2.203 | 12.00 | 0.17 | 4.8 | 95.2 | 0.0 | -2.07 | 0.55 | 0.56 | -0.10 | 4.1 | 0.004 | 0.92 | 0.0 | 0.05 | 14.46 | 0.00 | 2.056 | 24.51 | 0.70 | 4.4 | 95.6 | 0.0 | 0.76 | 1.20 | 0.62 | 0.83 | 0.32 | 23658 | 3184 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SSJ | 10295 | 2022-05-17 | 2019-09-08 | 2.75 | 3.13 | — | 3.2 | 0.016 | 1.23 | 0.0 | 0.08 | 12.91 | 0.01 | 1.227 | 9.87 | 0.54 | 3.2 | 96.8 | 0.0 | -4.66 | 0.49 | 0.47 | -0.09 | 3.1 | 0.008 | 0.95 | 0.0 | 0.04 | 17.51 | 0.01 | 1.812 | 8.36 | 1.71 | 2.5 | 97.2 | 0.2 | -0.53 | 1.65 | 0.66 | 0.82 | 2.34 | 104100 | 13320 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 5G2X | 3331 | 2022-05-14 | 2016-04-16 | 3.8 | 3.49 | — | 3.4 | 0.001 | 0.31 | 0.0 | 0.02 | 11.56 | 0.00 | 2.219 | 4.36 | 0.45 | 19.7 | 74.4 | 5.9 | -5.72 | 0.51 | 0.30 | -0.09 | 3.3 | 0.004 | 0.76 | 0.0 | 0.04 | 17.15 | 0.01 | 1.994 | 28.48 | 0.45 | 18.5 | 80.5 | 1.1 | -4.42 | 1.71 | 0.79 | 0.64 | 0.68 | 19072 | 487 | 3 | 704 | 0 | 0 | 0 | logfile |
✔ | 6U0M | 20607 | 2022-05-17 | 2019-08-14 | 3.9 | 4.53 | — | 4.3 | 0.005 | 1.05 | 2.0 | 0.06 | 16.74 | 0.01 | 2.211 | 9.82 | 0.47 | 13.2 | 86.7 | 0.2 | -5.28 | 0.81 | 0.63 | -0.08 | 4.3 | 0.003 | 0.81 | 0.0 | 0.04 | 17.45 | 0.00 | 2.127 | 15.02 | 0.34 | 9.7 | 90.3 | 0.0 | -2.86 | 1.80 | 0.87 | 0.78 | 0.25 | 41146 | 5105 | 16 | 34 | 3 | 0 | 0 | logfile |
✔ | 6KKR | 0701 | 2022-05-12 | 2019-07-27 | 2.9 | 2.91 | — | 20.0 | 0.008 | 1.10 | 0.0 | 0.06 | 10.99 | 0.01 | 2.348 | 3.23 | 0.23 | 3.9 | 96.1 | 0.0 | -3.53 | 0.05 | 0.00 | -0.07 | 2.8 | 0.003 | 0.77 | 0.0 | 0.04 | 13.11 | 0.00 | 2.105 | 13.63 | 2.15 | 4.1 | 95.9 | 0.0 | 0.35 | 1.64 | 0.12 | 0.11 | 0.38 | 8416 | 1074 | 4 | 0 | 24 | 0 | 0 | logfile |
✔ | 5MPP | 3538 | 2022-05-14 | 2016-12-17 | 3.9 | 4.03 | — | 4.1 | 0.009 | 1.02 | 0.0 | 0.06 | 14.77 | 0.01 | 2.456 | 7.21 | 5.00 | 5.3 | 94.7 | 0.0 | -3.86 | 0.58 | 0.49 | -0.06 | 4.0 | 0.006 | 0.86 | 0.0 | 0.05 | 17.83 | 0.01 | 2.129 | 14.86 | 1.18 | 5.6 | 94.4 | 0.0 | -0.23 | 3.97 | 0.83 | 0.87 | 0.91 | 70560 | 9240 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Z5U | 11082 | 2022-05-14 | 2020-05-27 | 3.9 | 4.52 | — | 38.0 | 0.021 | 1.88 | 10.0 | 0.11 | 11.93 | 0.01 | 0.901 | 4.94 | 1.69 | 2.0 | 97.7 | 0.3 | -0.47 | 0.18 | 0.03 | -0.06 | 4.1 | 0.008 | 0.89 | 1.0 | 0.04 | 14.43 | 0.01 | 2.092 | 11.99 | 0.15 | 4.7 | 95.2 | 0.0 | -0.06 | 1.51 | 0.27 | 0.13 | 0.35 | 17880 | 2334 | 14 | 0 | 4 | 0 | 0 | logfile |
✔ | 6SXA | 10337 | 2022-05-12 | 2019-09-25 | 3.6 | 5.82 | 4.21 | 4.6 | 0.010 | 1.37 | 5.0 | 0.09 | 15.20 | 0.01 | 2.245 | 15.33 | 3.18 | 10.9 | 88.9 | 0.2 | -4.66 | 0.83 | 0.67 | -0.05 | 4.6 | 0.003 | 0.82 | 0.0 | 0.04 | 15.05 | 0.00 | 2.275 | 11.82 | 0.14 | 5.7 | 94.2 | 0.1 | -0.22 | 1.72 | 0.91 | 0.85 | 0.41 | 7014 | 943 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NZM | 12665 | 2022-05-13 | 2021-03-24 | 3.96 | 6.56 | 4.22 | 4.2 | 0.007 | 1.12 | 0.0 | 0.06 | 13.92 | 0.01 | 1.774 | 11.33 | 0.00 | 3.8 | 96.2 | 0.0 | -1.56 | 0.77 | 0.51 | -0.04 | 4.3 | 0.003 | 0.72 | 0.0 | 0.04 | 14.93 | 0.00 | 2.028 | 16.63 | 0.21 | 2.4 | 97.6 | 0.0 | 0.49 | 1.48 | 0.94 | 0.84 | 0.23 | 9109 | 1157 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 7oPE | 13017 | 2022-05-16 | 2021-05-31 | 3.2 | 5.30 | 3.21 | 5.0 | 0.011 | 1.04 | 2.0 | 0.06 | 15.48 | 0.01 | 1.028 | 4.88 | 0.23 | 8.2 | 91.6 | 0.2 | -3.62 | 0.89 | 0.72 | -0.03 | 5.0 | 0.006 | 0.81 | 1.0 | 0.04 | 17.27 | 0.01 | 1.504 | 31.70 | 0.93 | 8.2 | 91.7 | 0.1 | -1.76 | 1.09 | 0.93 | 0.87 | 0.28 | 93862 | 3818 | 33 | 2996 | 0 | 0 | 0 | logfile |
✔ | 7ASN | 11901 | 2022-05-15 | 2020-10-27 | 2.73 | 4.10 | — | 3.0 | 0.008 | 1.05 | 0.0 | 0.05 | 18.86 | 0.01 | 1.953 | 13.57 | 0.48 | 11.3 | 88.6 | 0.1 | -3.27 | 0.46 | 0.23 | -0.03 | 2.4 | 0.004 | 0.71 | 0.0 | 0.04 | 18.43 | 0.01 | 2.007 | 20.68 | 3.83 | 9.0 | 90.9 | 0.0 | -2.12 | 2.00 | 0.87 | 0.80 | 0.84 | 80694 | 2545 | 25 | 2848 | 0 | 0 | 0 | logfile |
✔ | 5VZL | 8749 | 2022-05-13 | 2017-05-29 | 3.9 | 4.38 | — | 19.0 | 0.006 | 0.96 | 0.0 | 0.05 | 14.28 | 0.01 | 2.216 | 7.76 | 0.25 | 8.4 | 91.6 | 0.0 | -4.13 | 0.31 | 0.03 | -0.03 | 17.0 | 0.010 | 1.23 | 1.0 | 0.05 | 16.68 | 0.01 | 1.239 | 23.62 | 0.25 | 9.1 | 90.9 | 0.0 | -2.51 | 2.13 | 0.41 | 0.22 | 0.62 | 13915 | 1451 | 3 | 115 | 1 | 0 | 0 | logfile |
✔ | 5LKH | 4068 | 2022-05-17 | 2016-07-22 | 3.46 | 5.27 | — | 11.0 | 0.018 | 2.37 | 65.0 | 0.12 | 12.66 | 0.02 | 2.255 | 87.25 | 1.96 | 3.4 | 95.2 | 1.4 | -0.27 | 0.38 | 0.17 | -0.03 | 8.8 | 0.004 | 0.83 | 0.0 | 0.04 | 15.55 | 0.01 | 2.085 | 26.64 | 0.22 | 6.6 | 93.4 | 0.0 | -0.75 | 2.06 | 0.50 | 0.56 | 0.33 | 37345 | 4740 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7D58 | 30577 | 2022-05-17 | 2020-09-25 | 2.9 | 3.51 | — | 5.3 | 0.002 | 0.66 | 0.0 | 0.54 | 13.94 | 0.00 | 2.139 | 8.38 | 0.09 | 5.8 | 94.2 | 0.0 | -3.64 | 0.55 | 0.24 | -0.02 | 3.4 | 0.007 | 1.28 | 0.0 | 0.17 | 17.71 | 0.01 | 2.066 | 17.56 | 2.77 | 6.8 | 93.2 | 0.0 | -1.95 | 1.85 | 0.76 | 0.69 | 0.77 | 40568 | 4980 | 26 | 46 | 8 | 0 | 0 | logfile |
✔ | 7Q1Z | 13776 | 2022-05-15 | 2021-10-22 | 3.4 | 2.41 | — | 4.0 | 0.003 | 0.55 | 0.0 | 0.04 | 12.53 | 0.00 | 2.074 | 6.33 | 0.04 | 2.2 | 97.8 | 0.0 | 0.60 | 0.48 | 0.31 | -0.02 | 2.2 | 0.005 | 0.79 | 0.0 | 0.05 | 16.02 | 0.01 | 2.100 | 11.70 | 0.74 | 3.3 | 96.7 | 0.0 | -0.15 | 1.59 | 0.75 | 0.75 | 1.53 | 23694 | 2916 | 21 | 0 | 63 | 0 | 0 | logfile |
✘ | 7QWS | 14193 | 2022-05-17 | 2022-01-25 | 3.4 | 3.09 | — | 7.2 | 0.002 | 0.46 | 0.0 | 0.03 | 14.64 | 0.00 | 2.011 | 9.49 | 1.65 | 3.7 | 96.3 | 0.0 | 0.47 | 0.23 | 0.02 | -0.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 137913 | 7047 | 55 | 3769 | 126 | 0 | 0 | logfile |
✔ | 3J7A | 2660 | 2022-05-14 | 2014-06-03 | 3.2 | 3.24 | 3.33 | 3.2 | 0.008 | 1.39 | 49.0 | 0.10 | 19.81 | 0.01 | 1.715 | 4.58 | 15.41 | 10.5 | 85.4 | 4.2 | -2.49 | 0.31 | 0.55 | -0.02 | 3.2 | 0.004 | 0.74 | 0.0 | 0.04 | 18.16 | 0.01 | 1.853 | 17.51 | 0.94 | 8.9 | 89.8 | 1.2 | -1.90 | 2.71 | 0.39 | 0.76 | 1.01 | 68866 | 4106 | 35 | 1682 | 69 | 0 | 0 | logfile |
✘ | 3J5Q | 5776 | 2022-05-14 | 2013-10-28 | 3.8 | 4.64 | — | 7.1 | 0.010 | 1.45 | 0.0 | 0.09 | 20.92 | 0.01 | 0.275 | 105.06 | 29.72 | 6.4 | 93.1 | 0.5 | -0.53 | 0.58 | 0.44 | -0.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18264 | 2324 | 8 | 0 | 168 | 0 | 0 | logfile |
✔ | 6RWE | 10038 | 2022-05-12 | 2019-06-04 | 3.0 | 3.12 | — | 3.7 | 0.009 | 1.02 | 1.0 | 0.06 | 13.12 | 0.01 | 1.975 | 6.79 | 0.73 | 7.4 | 92.5 | 0.1 | -4.84 | 0.44 | 0.32 | 0.00 | 3.1 | 0.008 | 1.01 | 2.0 | 0.05 | 18.21 | 0.01 | 2.002 | 17.29 | 2.52 | 6.2 | 93.8 | 0.0 | -1.73 | 1.38 | 0.71 | 0.73 | 1.38 | 53719 | 6454 | 26 | 95 | 8 | 0 | 0 | logfile |
✘ | 6RBE | 4794 | 2022-05-15 | 2019-04-10 | 3.8 | 4.03 | 3.73 | 40.0 | 0.007 | 1.27 | 0.0 | 0.06 | 18.44 | 0.01 | 2.076 | 9.23 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.25 | 0.02 | 0.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |