Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MiD	23847	2021-12-01	2021-04-16	3.56	4.10	—	3.9	0.010	1.02	0.0	0.06	20.24	0.01	0.918	14.61	5.73	8.6	91.3	0.1	-1.30	0.76	0.66	0.22	4.0	0.005	0.78	0.0	0.04	19.98	0.01	2.152	12.77	0.11	6.0	94.0	0.0	-0.09	1.89	0.81	0.80	0.74	9789	1080	11	57	6	0	0	logfile
✔	6XWQ	10635	2021-12-01	2020-01-24	3.41	4.27	—	4.0	0.003	0.61	0.0	0.04	13.42	0.00	2.171	10.53	0.00	3.5	96.2	0.2	-2.80	0.73	0.80	0.22	4.0	0.003	0.77	0.0	0.04	15.44	0.00	2.161	13.51	0.20	3.3	96.7	0.0	1.14	1.17	0.72	0.84	0.62	9572	1281	6	0	0	0	0	logfile
✔	6TA3	10421	2021-12-01	2019-10-29	3.8	4.18	—	3.9	0.024	2.45	4.0	0.08	18.76	0.01	0.317	210.56	16.02	0.8	99.2	0.0	1.86	0.67	0.49	0.26	4.0	0.008	1.20	1.0	0.05	17.85	0.01	1.307	33.95	0.00	3.2	96.8	0.0	-0.17	2.41	0.77	0.73	0.34	9491	1201	6	0	5	0	0	logfile
✔	6i1X	0326	2021-12-01	2018-10-30	3.7	3.83	—	3.8	0.013	1.81	34.0	0.10	14.94	0.01	0.458	50.06	4.35	7.5	90.6	1.9	-3.51	0.50	0.32	0.28	3.8	0.007	0.96	1.0	0.05	16.51	0.01	1.578	20.67	0.26	5.3	94.3	0.4	-1.42	1.04	0.65	0.60	0.73	54915	7290	15	0	0	0	0	logfile
✔	6UKT	20812	2021-12-01	2019-10-05	3.87	4.71	—	4.3	0.007	1.02	0.0	0.06	16.90	0.01	2.247	10.29	0.46	15.8	84.2	0.0	-5.03	0.89	0.80	0.36	4.3	0.004	0.74	0.0	0.04	17.69	0.01	2.138	15.06	0.46	12.0	87.9	0.1	-2.44	0.56	0.90	0.84	0.57	8979	1204	6	0	0	0	0	logfile
✔	7M3L	23656	2021-12-01	2021-03-18	3.2	4.99	—	3.3	0.009	0.97	0.0	0.06	15.05	0.01	1.551	6.78	0.30	9.1	90.6	0.3	-3.19	0.29	0.38	0.40	3.1	0.004	0.79	0.0	0.04	15.22	0.00	2.136	17.31	0.45	8.2	91.7	0.1	-1.01	3.82	0.46	0.76	2.14	6113	775	3	0	0	0	0	logfile
✔	7M18	23615	2021-12-01	2021-03-12	3.38	4.09	—	4.1	0.007	1.50	0.0	0.17	17.26	0.01	1.728	23.69	0.28	10.4	89.3	0.3	-2.48	0.74	0.73	0.41	4.1	0.007	1.02	0.0	0.05	17.57	0.01	2.171	18.57	0.39	9.0	90.9	0.1	-2.05	0.52	0.75	0.74	0.41	54064	6904	32	8	16	0	0	logfile
✔	7BW8	30230	2021-12-01	2020-04-14	3.8	4.16	3.79	4.4	0.009	1.38	0.0	0.07	17.39	0.01	1.974	49.64	0.00	22.3	77.7	0.0	-5.01	0.70	0.66	0.41	4.4	0.003	0.93	0.0	0.05	18.20	0.01	2.199	20.56	0.74	12.0	88.0	0.0	-3.10	1.56	0.68	0.63	0.49	6021	737	3	0	0	0	0	logfile
✔	5Z9W	6903	2021-12-01	2018-02-05	3.6	3.84	—	3.7	0.005	0.80	0.0	0.05	11.69	0.01	1.979	1.80	0.00	7.0	93.0	0.0	-2.40	0.61	0.65	0.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	162027	19788	102	306	0	0	0	logfile
✔	6NPY	0476	2021-12-01	2019-01-18	3.8	4.03	—	3.8	0.006	1.16	0.0	0.06	16.44	0.01	2.244	8.58	0.84	14.6	85.3	0.1	-4.90	0.79	0.71	0.51	3.8	0.005	0.96	0.0	0.05	17.26	0.01	2.126	25.14	0.72	13.5	86.5	0.0	-2.55	1.81	0.79	0.72	0.29	7586	965	3	0	1	0	0	logfile
✔	6X62	22068	2021-12-01	2020-05-27	3.5	3.69	—	3.7	0.014	1.87	45.0	0.09	15.63	0.01	2.185	6.90	4.90	8.5	91.5	0.0	-3.87	0.65	0.64	0.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	109070	15548	117	0	0	0	0	logfile
✔	7F62	31470	2021-12-01	2021-06-24	3.6	4.33	—	4.1	0.003	0.65	0.0	0.04	13.21	0.00	1.925	19.58	1.38	8.1	91.6	0.2	-2.76	0.66	0.62	0.54	4.1	0.003	0.66	0.0	0.04	15.35	0.00	2.242	10.94	0.55	9.8	90.2	0.0	-1.83	1.44	0.69	0.77	1.00	3321	427	3	0	0	0	0	logfile
✔	6RiU	4898	2021-12-01	2019-04-25	3.9	6.21	2.04	7.0	0.008	1.19	0.0	0.09	15.19	0.01	2.182	5.20	0.00	8.4	91.6	0.0	-5.77	0.59	0.69	0.56	7.1	0.003	0.67	0.0	0.03	16.53	0.00	2.057	13.17	0.00	5.1	94.9	0.0	-0.39	1.43	0.61	0.75	1.30	2882	182	2	0	0	0	1430	logfile
✔	5W81	8782	2021-12-01	2017-06-21	3.37	3.79	—	3.9	0.008	1.26	1.0	0.06	13.30	0.00	1.940	1.47	0.00	5.1	94.9	0.0	-3.11	0.45	0.60	0.57	3.8	0.013	1.30	1.0	0.04	17.03	0.01	1.754	12.79	0.20	2.8	97.0	0.2	0.06	1.58	0.57	0.82	1.35	9393	1173	1	0	4	0	0	logfile
✔	6W8P	21577	2021-12-01	2020-03-21	3.6	4.05	—	4.0	0.004	0.76	0.0	0.04	18.04	0.00	2.236	15.41	10.89	10.4	89.6	0.0	-3.47	0.57	0.80	0.57	4.0	0.004	0.82	0.0	0.04	17.53	0.00	2.145	15.04	0.57	9.4	90.6	0.0	-0.35	2.10	0.57	0.79	0.70	6509	844	4	0	3	0	0	logfile
✔	5X0M	6698	2021-12-02	2017-01-21	3.8	3.85	—	3.9	0.008	1.37	2.0	0.06	20.84	0.01	1.915	54.20	11.48	12.9	81.9	5.2	-5.95	0.39	0.57	0.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10654	1323	1	0	20	0	0	logfile
✔	6NTS	0510	2021-12-01	2019-01-30	3.63	4.31	3.00	3.6	0.016	0.51	0.0	0.03	13.21	0.00	1.917	2.01	0.00	3.8	96.2	0.0	-2.08	0.89	0.77	0.59	3.7	0.003	0.63	0.0	0.04	15.23	0.00	2.078	8.53	0.00	2.4	97.6	0.0	0.80	2.30	0.92	0.85	1.23	9956	1240	5	0	3	0	0	logfile
✘	5MM2	3528	2021-12-01	2016-12-08	2.7	12.53	1.51	—	0.011	1.29	0.0	0.07	10.78	0.01	1.325	19.72	0.54	12.1	87.0	0.8	-3.96	-0.08	-0.03	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6605	854	3	0	0	0	0	logfile
✔	7ARi	11883	2021-12-01	2020-10-25	3.4	3.64	—	3.6	0.003	0.78	0.0	0.05	13.73	0.00	2.339	3.87	0.68	4.4	95.6	0.0	-5.94	0.64	0.67	0.67	3.6	0.003	0.74	0.0	0.04	16.20	0.00	2.181	9.65	0.00	4.9	95.1	0.0	-1.76	0.88	0.70	0.77	0.55	9538	1246	4	0	0	0	0	logfile
✔	6Z3Y	11066	2021-12-01	2020-05-22	3.51	3.78	3.53	3.6	0.002	0.52	0.0	0.04	11.75	0.00	2.269	9.16	1.68	5.6	94.4	0.0	0.09	0.59	0.70	0.69	3.6	0.004	0.89	0.0	0.05	15.16	0.01	2.094	17.35	0.61	8.7	91.3	0.0	-0.83	0.71	0.59	0.71	1.14	6131	771	2	0	0	0	0	logfile

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