Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VZF	32227	2022-12-11	2021-11-16	2.95	2.71	—	3.0	0.009	1.06	0.0	0.06	16.23	0.01	1.971	38.83	0.00	26.5	73.5	0.0	-5.56	0.30	0.43	-0.13	2.8	0.004	0.91	0.0	0.05	18.86	0.00	2.102	13.65	4.61	18.2	81.8	0.0	-4.30	1.96	0.37	0.63	0.33	2628	363	3	0	0	0	0	logfile
✔	6UMM	20820	2022-12-15	2019-10-09	3.7	6.74	4.15	4.0	0.006	0.79	0.0	0.04	13.23	0.00	2.203	12.01	0.17	4.8	95.2	0.0	-2.07	0.55	0.56	-0.10	4.1	0.003	0.92	0.0	0.05	14.46	0.00	2.090	19.20	0.37	3.7	96.3	0.0	0.74	1.20	0.62	0.82	0.16	23658	3184	10	0	0	0	0	logfile
✔	6SSJ	10295	2022-12-19	2019-09-08	2.75	3.13	—	3.2	0.016	1.23	0.0	0.08	12.91	0.01	1.227	9.87	0.54	3.2	96.8	0.0	-4.66	0.49	0.47	-0.09	3.1	0.003	0.66	0.0	0.04	17.27	0.00	2.169	7.11	1.32	2.5	97.5	0.0	0.35	1.66	0.68	0.83	2.15	104100	13320	60	0	0	0	0	logfile
✔	7UHB	26511	2022-12-11	2022-03-26	3.0	3.17	2.97	3.2	0.011	1.35	3.0	0.12	9.86	0.00	2.562	5.08	1.42	3.0	96.6	0.4	-0.52	0.52	0.54	-0.09	3.1	0.004	0.63	0.0	0.04	16.50	0.00	2.265	9.19	2.84	4.1	95.9	0.0	0.51	2.44	0.70	0.84	3.45	2141	270	3	0	3	0	0	logfile
✔	5G2X	3331	2022-12-14	2016-04-16	3.8	3.49	—	3.4	0.001	0.31	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.004	0.83	0.0	0.04	19.26	0.01	1.964	33.23	0.23	18.1	80.7	1.3	-5.17	1.94	0.80	0.66	0.62	19072	487	3	704	0	0	0	logfile
✘	6U0M	20607	2022-12-21	2019-08-14	3.9	4.53	—	4.3	0.005	1.05	2.0	0.06	16.74	0.01	2.211	9.82	0.47	13.2	86.7	0.2	-5.28	0.81	0.63	-0.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	41146	5105	16	34	3	0	0	logfile
✔	5MPP	3538	2022-12-14	2016-12-17	3.9	4.03	—	4.1	0.009	1.02	0.0	0.06	14.77	0.01	2.456	7.21	5.00	5.3	94.7	0.0	-3.86	0.58	0.49	-0.06	4.0	0.006	0.82	0.0	0.05	17.64	0.00	2.099	14.51	1.10	4.8	95.2	0.0	-0.09	3.97	0.83	0.87	0.79	70560	9240	60	0	0	0	0	logfile
✔	6Z5U	11082	2022-12-13	2020-05-27	3.9	4.52	—	38.0	0.021	1.88	10.0	0.11	11.91	0.01	0.901	4.94	1.69	2.0	97.7	0.3	-0.47	0.18	0.03	-0.06	4.5	0.003	0.76	0.0	0.04	14.53	0.00	1.928	14.28	0.41	5.2	94.8	0.0	-0.62	1.59	0.29	0.18	0.56	17880	2334	14	0	4	0	0	logfile
✔	6SXA	10337	2022-12-11	2019-09-25	3.6	5.82	4.21	4.6	0.010	1.37	5.0	0.09	15.20	0.01	2.245	15.33	3.18	10.9	88.9	0.2	-4.66	0.83	0.67	-0.05	4.6	0.003	0.83	0.0	0.04	15.14	0.00	2.260	11.53	0.14	6.2	93.7	0.1	-0.26	1.73	0.91	0.85	0.41	7014	943	2	0	0	0	0	logfile
✔	7R4Q	14314	2022-12-22	2022-02-09	3.6	3.14	—	5.7	0.022	3.25	109.0	0.39	15.94	0.02	1.450	30.29	3.30	8.7	91.1	0.2	-2.35	0.48	0.21	-0.05	4.0	0.011	1.10	8.0	0.17	15.72	0.01	1.713	26.22	0.78	9.0	91.0	0.0	-2.25	1.72	0.63	0.57	0.48	51420	3414	13	0	43	0	24182	logfile
✔	7NZM	12665	2022-12-12	2021-03-24	3.96	6.56	4.22	4.2	0.007	1.12	0.0	0.06	13.92	0.01	1.774	11.33	0.00	3.8	96.2	0.0	-1.56	0.77	0.51	-0.04	4.3	0.003	0.74	0.0	0.04	14.94	0.00	2.099	15.51	0.10	2.5	97.5	0.0	0.33	1.48	0.94	0.83	0.23	9109	1157	8	0	4	0	0	logfile
✔	7oPE	13017	2022-12-17	2021-05-31	3.2	5.30	3.21	5.0	0.011	1.04	2.0	0.06	15.48	0.01	1.028	4.88	0.23	8.2	91.6	0.2	-3.62	0.89	0.72	-0.03	5.0	0.005	0.81	0.0	0.04	17.65	0.01	1.985	36.74	1.51	9.0	90.9	0.1	-1.91	1.82	0.93	0.88	0.28	93862	3818	33	2996	0	0	0	logfile
✔	7T3L	25662	2022-12-22	2021-12-08	3.6	8.29	—	3.5	0.004	0.74	0.0	0.05	17.15	0.01	2.223	7.77	0.52	5.0	95.0	0.0	-1.92	0.73	0.45	-0.03	3.4	0.002	0.60	0.0	0.04	17.41	0.00	2.115	19.01	0.08	5.3	94.7	0.0	0.42	1.17	0.94	0.84	-0.02	52219	6242	28	200	0	0	0	logfile
✔	5VZL	8749	2022-12-13	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	14.28	0.01	2.216	7.76	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	17.0	0.003	0.68	0.0	0.04	15.78	0.00	1.238	14.34	0.50	5.8	94.2	0.0	-1.59	1.27	0.39	0.19	0.68	13915	1451	3	115	1	0	0	logfile
✔	5LKH	4068	2022-12-19	2016-07-22	3.46	5.27	—	11.0	0.018	2.37	65.0	0.12	12.66	0.02	2.255	87.25	1.96	3.4	95.2	1.4	-0.27	0.38	0.17	-0.03	8.8	0.003	0.81	0.0	0.04	15.64	0.00	2.120	25.20	0.34	6.3	93.7	0.0	-0.80	2.12	0.50	0.56	0.41	37345	4740	5	0	0	0	0	logfile
✔	7ASN	11901	2022-12-15	2020-10-27	2.73	4.10	—	3.0	0.008	1.05	0.0	0.05	18.86	0.01	1.953	13.57	0.48	11.3	88.6	0.1	-3.27	0.46	0.23	-0.03	2.4	0.005	0.78	0.0	0.04	18.80	0.01	2.007	25.75	4.70	9.7	90.3	0.0	-2.30	2.50	0.87	0.80	1.21	80694	2545	25	2848	0	0	0	logfile
✔	7D58	30577	2022-12-20	2020-09-25	2.9	3.51	—	5.3	0.002	0.66	0.0	0.54	13.94	0.00	2.139	8.59	0.09	5.8	94.2	0.0	-3.64	0.55	0.24	-0.02	3.3	0.006	1.28	0.0	0.17	17.94	0.01	2.058	17.76	2.68	6.6	93.4	0.0	-1.88	2.22	0.79	0.78	1.00	40568	4980	26	46	8	0	0	logfile
✔	3J7A	2660	2022-12-14	2014-06-03	3.2	3.24	3.33	3.2	0.008	1.39	49.0	0.10	19.81	0.01	1.715	4.58	15.41	10.5	85.4	4.2	-2.49	0.31	0.55	-0.02	3.2	0.004	0.75	0.0	0.04	18.09	0.01	1.827	17.88	1.22	9.1	89.6	1.2	-1.88	2.71	0.40	0.78	1.11	68866	4106	35	1682	69	0	0	logfile
✔	7TR8	26082	2022-12-18	2022-01-28	3.6	4.39	—	4.1	0.002	0.54	0.0	0.04	14.37	0.00	2.037	11.95	0.03	7.5	92.2	0.4	-1.00	0.75	0.46	-0.02	4.1	0.003	0.81	0.0	0.05	16.81	0.00	2.062	22.18	0.29	8.3	91.3	0.3	-1.77	2.23	0.83	0.71	0.44	33581	4192	18	45	2	0	0	logfile
✔	7Q1Z	13776	2022-12-15	2021-10-22	3.4	2.41	—	4.0	0.003	0.55	0.0	0.04	12.53	0.00	2.074	6.33	0.04	2.2	97.8	0.0	0.60	0.48	0.31	-0.02	2.1	0.004	0.75	0.0	0.05	16.03	0.00	2.048	11.98	0.78	3.9	96.1	0.0	-0.28	1.65	0.75	0.75	1.75	23694	2916	21	0	63	0	0	logfile

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