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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8GWG | 34312 | 2023-04-26 | 2022-09-17 | 3.37 | 3.96 | 3.48 | 7.9 | 0.009 | 0.94 | 5.0 | 0.06 | 17.82 | 0.01 | 2.045 | 13.54 | 5.14 | 8.4 | 91.2 | 0.4 | -1.94 | 0.59 | 0.16 | -0.05 | 3.5 | 0.004 | 0.85 | 0.0 | 0.04 | 17.35 | 0.01 | 2.073 | 20.41 | 0.70 | 8.6 | 91.2 | 0.2 | -2.15 | 1.82 | 0.77 | 0.63 | 0.57 | 21955 | 2668 | 13 | 52 | 9 | 1 | 0 | logfile |
✔ | 6SXA | 10337 | 2023-04-20 | 2019-09-25 | 3.6 | 5.82 | 4.21 | 4.6 | 0.010 | 1.37 | 5.0 | 0.09 | 15.20 | 0.01 | 2.245 | 15.25 | 3.18 | 10.9 | 88.9 | 0.2 | -4.66 | 0.83 | 0.67 | -0.05 | 4.6 | 0.003 | 0.83 | 0.0 | 0.04 | 15.04 | 0.00 | 2.240 | 11.90 | 0.00 | 6.0 | 93.9 | 0.1 | -0.30 | 1.73 | 0.91 | 0.85 | 0.41 | 7014 | 943 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NZM | 12665 | 2023-04-21 | 2021-03-24 | 3.96 | 6.56 | 4.22 | 4.2 | 0.007 | 1.12 | 0.0 | 0.06 | 13.94 | 0.01 | 1.774 | 11.10 | 0.00 | 3.8 | 96.2 | 0.0 | -1.56 | 0.77 | 0.51 | -0.04 | 4.3 | 0.003 | 0.74 | 0.0 | 0.04 | 15.04 | 0.00 | 2.061 | 18.47 | 0.21 | 2.9 | 97.1 | 0.0 | 0.28 | 1.50 | 0.94 | 0.84 | 0.28 | 9109 | 1157 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 8HAo | 34598 | 2023-04-24 | 2022-10-26 | 3.76 | 3.06 | 3.49 | 3.8 | 0.003 | 0.50 | 0.0 | 0.04 | 15.90 | 0.00 | 1.785 | 5.73 | 0.40 | 2.9 | 96.9 | 0.2 | 1.91 | 0.58 | 0.52 | -0.03 | 3.8 | 0.004 | 0.87 | 0.0 | 0.05 | 17.30 | 0.00 | 2.050 | 18.94 | 0.80 | 4.4 | 95.6 | 0.1 | 0.27 | 1.23 | 0.65 | 0.69 | 0.83 | 18479 | 2314 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 5VZL | 8749 | 2023-04-23 | 2017-05-29 | 3.9 | 4.38 | — | 19.0 | 0.006 | 0.96 | 0.0 | 0.05 | 14.28 | 0.01 | 2.216 | 7.72 | 0.25 | 8.4 | 91.6 | 0.0 | -4.13 | 0.31 | 0.03 | -0.03 | 17.0 | 0.002 | 0.64 | 0.0 | 0.04 | 15.49 | 0.00 | 1.241 | 12.10 | 0.08 | 5.0 | 95.0 | 0.0 | -1.15 | 1.21 | 0.38 | 0.18 | 0.61 | 13915 | 1451 | 3 | 115 | 1 | 0 | 0 | logfile |
✔ | 3J7A | 2660 | 2023-04-26 | 2014-06-03 | 3.2 | 3.24 | 3.33 | 3.2 | 0.008 | 1.39 | 49.0 | 0.10 | 19.81 | 0.01 | 1.715 | 4.56 | 15.41 | 10.5 | 85.4 | 4.2 | -2.49 | 0.31 | 0.55 | -0.02 | 3.2 | 0.003 | 0.70 | 0.0 | 0.04 | 18.04 | 0.01 | 1.866 | 17.03 | 1.05 | 8.0 | 90.8 | 1.2 | -1.89 | 2.71 | 0.40 | 0.77 | 1.02 | 68866 | 4106 | 35 | 1682 | 69 | 0 | 0 | logfile |
✔ | 7Q1Z | 13776 | 2023-04-26 | 2021-10-22 | 3.4 | 2.41 | — | 4.0 | 0.004 | 0.61 | 0.0 | 0.04 | 12.71 | 0.00 | 2.074 | 6.27 | 0.04 | 2.2 | 97.8 | 0.0 | 0.60 | 0.48 | 0.31 | -0.02 | 2.1 | 0.006 | 0.85 | 0.0 | 0.05 | 15.89 | 0.01 | 2.073 | 12.66 | 0.94 | 4.4 | 95.6 | 0.0 | -0.31 | 1.64 | 0.75 | 0.76 | 1.74 | 23694 | 2916 | 21 | 0 | 63 | 0 | 0 | logfile |
✔ | 6RWE | 10038 | 2023-04-20 | 2019-06-04 | 3.0 | 3.12 | — | 3.7 | 0.009 | 1.02 | 1.0 | 0.06 | 13.12 | 0.01 | 1.975 | 6.33 | 0.73 | 7.4 | 92.5 | 0.1 | -4.84 | 0.44 | 0.32 | 0.00 | 3.1 | 0.008 | 1.06 | 0.0 | 0.06 | 18.26 | 0.01 | 1.845 | 18.12 | 2.92 | 7.6 | 92.3 | 0.0 | -2.05 | 2.44 | 0.76 | 0.81 | 1.72 | 53719 | 6454 | 26 | 95 | 8 | 0 | 0 | logfile |
✔ | 6CRZ | 7577 | 2023-04-27 | 2018-03-19 | 3.3 | 3.42 | 3.35 | 4.5 | 0.007 | 1.01 | 0.0 | 0.06 | 9.26 | 0.01 | 2.254 | 6.77 | 0.04 | 7.8 | 92.2 | 0.0 | -4.10 | 0.39 | 0.17 | 0.01 | 3.3 | 0.004 | 0.75 | 0.0 | 0.05 | 13.80 | 0.00 | 2.093 | 12.74 | 0.58 | 6.4 | 93.6 | 0.0 | -1.78 | 1.50 | 0.62 | 0.59 | 0.81 | 25909 | 3205 | 25 | 0 | 66 | 0 | 0 | logfile |
✔ | 6QYM | 4679 | 2023-04-28 | 2019-03-09 | 3.6 | 3.25 | — | 4.0 | 0.007 | 0.89 | 0.0 | 0.05 | 9.66 | 0.01 | 2.201 | 8.77 | 0.00 | 6.5 | 93.5 | 0.0 | -4.63 | 0.62 | 0.60 | 0.02 | 3.5 | 0.005 | 0.95 | 0.0 | 0.05 | 17.36 | 0.00 | 2.072 | 29.90 | 1.38 | 5.4 | 94.6 | 0.0 | -0.66 | 2.36 | 0.69 | 0.67 | -0.16 | 26880 | 3360 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oiG | 20077 | 2023-04-26 | 2019-04-09 | 3.8 | 5.08 | — | 5.0 | 0.011 | 1.45 | 2.0 | 0.07 | 19.62 | 0.01 | 0.087 | 53.69 | 1.20 | 15.9 | 83.9 | 0.2 | -5.09 | 0.77 | 0.48 | 0.04 | 4.9 | 0.010 | 1.00 | 6.0 | 0.05 | 18.66 | 0.01 | 1.416 | 32.12 | 0.74 | 13.7 | 86.2 | 0.1 | -2.80 | 3.10 | 0.89 | 0.86 | 0.08 | 129140 | 6757 | 48 | 3522 | 116 | 0 | 0 | logfile |
✔ | 7S8V | 24927 | 2023-04-22 | 2021-09-20 | 3.73 | 4.42 | — | 3.9 | 0.004 | 0.65 | 0.0 | 0.09 | 12.46 | 0.00 | 2.098 | 5.61 | 0.14 | 7.0 | 93.0 | 0.0 | -3.48 | 0.68 | 0.64 | 0.04 | 3.9 | 0.003 | 0.68 | 0.0 | 0.04 | 14.49 | 0.00 | 1.955 | 15.73 | 0.00 | 9.4 | 90.6 | 0.0 | -2.21 | 1.59 | 0.70 | 0.71 | 0.69 | 12502 | 782 | 7 | 0 | 12 | 0 | 6045 | logfile |
✔ | 6XSS | 22305 | 2023-04-20 | 2020-07-16 | 3.7 | 3.37 | — | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 12.31 | 0.00 | 1.843 | 28.34 | 0.00 | 2.5 | 97.5 | 0.0 | -0.32 | 0.74 | 0.78 | 0.04 | 3.3 | 0.003 | 0.80 | 0.0 | 0.04 | 16.96 | 0.00 | 2.251 | 16.62 | 0.49 | 0.9 | 99.1 | 0.0 | 2.42 | 1.33 | 0.74 | 0.79 | 0.26 | 8048 | 1040 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6J5T | 0680 | 2023-04-19 | 2019-01-12 | 3.4 | 3.94 | — | 3.0 | 0.011 | 1.21 | 0.0 | 0.07 | 12.81 | 0.02 | 2.233 | 7.03 | 0.59 | 11.3 | 88.4 | 0.3 | -4.25 | 0.83 | 0.67 | 0.05 | 3.0 | 0.006 | 1.05 | 0.0 | 0.05 | 15.84 | 0.01 | 2.050 | 24.51 | 0.76 | 11.3 | 88.5 | 0.2 | -1.87 | 1.35 | 0.91 | 0.85 | 1.27 | 53488 | 6640 | 25 | 0 | 15 | 0 | 0 | logfile |
✔ | 6Q2o | 20576 | 2023-04-23 | 2019-08-08 | 3.65 | 3.77 | — | 3.9 | 0.004 | 0.79 | 0.0 | 0.05 | 8.40 | 0.01 | 1.534 | 3.25 | 0.12 | 5.6 | 94.4 | 0.0 | -3.75 | 0.48 | 0.23 | 0.05 | 3.6 | 0.006 | 0.95 | 0.0 | 0.05 | 15.06 | 0.01 | 2.101 | 21.20 | 0.78 | 9.2 | 90.8 | 0.1 | -2.53 | 1.99 | 0.69 | 0.66 | 0.60 | 15196 | 1900 | 8 | 0 | 20 | 0 | 0 | logfile |
✔ | 6NEQ | 9358 | 2023-04-23 | 2018-12-18 | 3.32 | 3.85 | — | 3.5 | 0.001 | 0.37 | 0.0 | 0.03 | 12.81 | 0.00 | 1.949 | 3.29 | 0.35 | 10.3 | 88.1 | 1.6 | -2.42 | 0.69 | 0.51 | 0.07 | 3.5 | 0.004 | 0.68 | 0.0 | 0.04 | 16.33 | 0.00 | 2.089 | 13.57 | 0.39 | 5.4 | 94.5 | 0.1 | -0.36 | 2.01 | 0.85 | 0.85 | 1.39 | 65776 | 5509 | 32 | 952 | 147 | 0 | 0 | logfile |
✔ | 6QS6 | 4624 | 2023-04-29 | 2019-02-20 | 3.9 | 4.03 | 2.44 | 4.0 | 0.011 | 1.09 | 0.0 | 0.06 | 10.53 | 0.01 | 2.187 | 6.85 | 0.07 | 8.2 | 91.8 | 0.0 | -4.07 | 0.57 | 0.46 | 0.09 | 3.9 | 0.003 | 0.80 | 0.0 | 0.05 | 16.46 | 0.00 | 1.964 | 18.64 | 0.47 | 5.7 | 94.3 | 0.0 | -0.45 | 1.40 | 0.74 | 0.77 | 0.63 | 28557 | 3568 | 13 | 0 | 35 | 0 | 0 | logfile |
✘ | 6QoZ | 4610 | 2023-04-24 | 2019-02-13 | 3.4 | 3.65 | 3.13 | 3.5 | 0.011 | 1.46 | 4.0 | 0.09 | 15.40 | 0.01 | 1.243 | 4.20 | 5.13 | 6.0 | 93.1 | 0.9 | -3.28 | 0.40 | 0.62 | 0.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17987 | 2307 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RTV | 24690 | 2023-04-19 | 2021-08-15 | 3.96 | 4.06 | — | 4.1 | 0.004 | 0.76 | 0.0 | 0.05 | 14.21 | 0.00 | 2.207 | 14.04 | 0.32 | 2.8 | 97.2 | 0.0 | 3.61 | 0.41 | 0.63 | 0.10 | 4.1 | 0.004 | 0.91 | 0.0 | 0.04 | 16.58 | 0.00 | 2.168 | 18.02 | 0.32 | 3.3 | 96.7 | 0.0 | 2.73 | 1.76 | 0.41 | 0.64 | 0.28 | 2881 | 366 | 3 | 0 | 6 | 0 | 0 | logfile |
✔ | 7EGC | 31112 | 2023-04-21 | 2021-03-24 | 3.9 | 3.72 | — | 4.9 | 0.008 | 1.13 | 76.0 | 0.08 | 15.43 | 0.01 | 1.402 | 24.31 | 3.39 | 7.3 | 91.9 | 0.8 | -3.59 | 0.43 | 0.10 | 0.10 | 3.1 | 0.004 | 0.81 | 0.0 | 0.05 | 16.66 | 0.00 | 1.986 | 17.27 | 0.40 | 6.5 | 93.4 | 0.2 | -0.77 | 1.26 | 0.51 | 0.32 | 0.51 | 113129 | 13879 | 63 | 142 | 18 | 0 | 0 | logfile |