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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7LJ3 | 23388 | 2023-11-19 | 2021-01-28 | 2.9 | 2.92 | — | 3.4 | 0.005 | 0.72 | 0.0 | 0.04 | 17.12 | 0.00 | 1.041 | 27.61 | 3.30 | 3.6 | 96.0 | 0.4 | 0.29 | 0.10 | 0.23 | -0.14 | 2.9 | 0.003 | 0.59 | 0.0 | 0.03 | 19.31 | 0.00 | 2.040 | 7.81 | 4.60 | 4.6 | 95.3 | 0.1 | 2.57 | 1.43 | 0.22 | 0.78 | 1.66 | 25714 | 2564 | 12 | 225 | 0 | 0 | 0 | logfile |
✔ | 7PC2 | 13316 | 2023-11-19 | 2021-08-03 | 2.8 | 3.39 | — | 6.5 | 0.033 | 1.66 | 5.0 | 0.06 | 15.68 | 0.01 | 1.809 | 9.01 | 1.49 | 7.8 | 92.2 | 0.0 | -3.81 | 0.43 | 0.05 | -0.14 | 3.1 | 0.005 | 1.10 | 2.0 | 0.06 | 17.89 | 0.01 | 1.959 | 19.86 | 4.47 | 7.3 | 92.7 | 0.0 | -2.01 | 1.76 | 0.68 | 0.63 | 1.39 | 27063 | 3093 | 68 | 0 | 210 | 0 | 0 | logfile |
✘ | 8EAo | 27792 | 2023-11-18 | 2022-08-29 | 3.2 | 4.04 | 3.15 | 20.0 | 0.003 | 0.60 | 0.0 | 0.05 | 14.09 | 0.00 | 2.197 | 10.56 | 0.10 | 3.6 | 96.4 | 0.0 | 1.03 | 0.18 | 0.04 | -0.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71628 | 8964 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VZF | 32227 | 2023-11-13 | 2021-11-16 | 2.95 | 2.71 | — | 3.0 | 0.009 | 1.06 | 0.0 | 0.06 | 16.23 | 0.01 | 1.971 | 38.45 | 0.00 | 26.5 | 73.5 | 0.0 | -5.56 | 0.30 | 0.43 | -0.13 | 2.8 | 0.005 | 0.93 | 0.0 | 0.05 | 18.70 | 0.00 | 2.192 | 14.23 | 5.32 | 20.2 | 79.8 | 0.0 | -4.30 | 1.92 | 0.37 | 0.63 | -0.01 | 2628 | 363 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8E55 | 27903 | 2023-11-15 | 2022-08-19 | 3.85 | 4.07 | 3.34 | 4.0 | 0.007 | 0.67 | 0.0 | 0.03 | 12.36 | 0.00 | 2.252 | 3.39 | 0.50 | 2.5 | 97.5 | 0.0 | 1.17 | 0.66 | 0.60 | -0.11 | 4.0 | 0.003 | 0.55 | 0.0 | 0.03 | 16.13 | 0.00 | 2.262 | 10.49 | 0.00 | 1.8 | 98.2 | 0.0 | 4.40 | 1.43 | 0.69 | 0.70 | -0.11 | 12176 | 780 | 4 | 0 | 0 | 0 | 6104 | logfile |
✘ | 6UMM | 20820 | 2023-11-18 | 2019-10-09 | 3.7 | 6.74 | 4.15 | 4.0 | 0.006 | 0.79 | 0.0 | 0.04 | 13.23 | 0.00 | 2.203 | 11.97 | 0.17 | 4.8 | 95.2 | 0.0 | -2.07 | 0.55 | 0.56 | -0.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23658 | 3184 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 5G2X | 3331 | 2023-11-17 | 2016-04-16 | 3.8 | 3.49 | — | 3.4 | 0.001 | 0.32 | 0.0 | 0.02 | 11.56 | 0.00 | 2.219 | 4.36 | 0.45 | 19.7 | 74.4 | 5.9 | -5.72 | 0.51 | 0.30 | -0.09 | 3.3 | 0.006 | 0.93 | 0.0 | 0.04 | 19.63 | 0.01 | 1.935 | 41.01 | 0.91 | 20.6 | 78.2 | 1.3 | -4.93 | 2.35 | 0.80 | 0.66 | 0.49 | 19072 | 487 | 3 | 704 | 0 | 0 | 0 | logfile |
✔ | 7UHB | 26511 | 2023-11-13 | 2022-03-26 | 3.0 | 3.17 | 2.97 | 3.2 | 0.011 | 1.36 | 3.0 | 0.12 | 9.92 | 0.00 | 2.562 | 5.08 | 1.42 | 3.0 | 96.6 | 0.4 | -0.52 | 0.52 | 0.54 | -0.09 | 3.2 | 0.003 | 0.61 | 0.0 | 0.04 | 16.83 | 0.00 | 2.223 | 8.94 | 2.84 | 3.0 | 97.0 | 0.0 | 0.69 | 2.47 | 0.69 | 0.83 | 3.49 | 2141 | 270 | 3 | 0 | 3 | 0 | 0 | logfile |
✔ | 6Z5U | 11082 | 2023-11-17 | 2020-05-27 | 3.9 | 4.52 | — | 38.0 | 0.021 | 1.88 | 10.0 | 0.11 | 11.91 | 0.01 | 0.901 | 4.89 | 1.69 | 2.0 | 97.7 | 0.3 | -0.47 | 0.18 | 0.03 | -0.06 | 4.1 | 0.003 | 0.71 | 0.0 | 0.04 | 14.35 | 0.00 | 2.124 | 12.51 | 0.36 | 5.1 | 94.9 | 0.0 | -0.25 | 1.55 | 0.28 | 0.16 | 0.60 | 17880 | 2334 | 14 | 0 | 4 | 0 | 0 | logfile |
✔ | 6SXA | 10337 | 2023-11-14 | 2019-09-25 | 3.6 | 5.82 | 4.21 | 4.6 | 0.010 | 1.37 | 5.0 | 0.09 | 15.20 | 0.01 | 2.245 | 15.25 | 3.18 | 10.9 | 88.9 | 0.2 | -4.66 | 0.83 | 0.67 | -0.05 | 4.6 | 0.003 | 0.83 | 0.0 | 0.04 | 15.04 | 0.00 | 2.240 | 11.90 | 0.00 | 6.0 | 93.9 | 0.1 | -0.30 | 1.73 | 0.91 | 0.85 | 0.41 | 7014 | 943 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GWG | 34312 | 2023-11-18 | 2022-09-17 | 3.37 | 3.96 | 3.48 | 7.9 | 0.009 | 0.94 | 5.0 | 0.06 | 17.82 | 0.01 | 2.045 | 13.54 | 5.14 | 8.4 | 91.2 | 0.4 | -1.94 | 0.59 | 0.16 | -0.05 | 3.4 | 0.003 | 0.80 | 0.0 | 0.04 | 17.21 | 0.00 | 2.091 | 18.31 | 0.61 | 7.5 | 92.2 | 0.3 | -1.79 | 1.70 | 0.76 | 0.60 | 0.23 | 21955 | 2668 | 13 | 52 | 9 | 1 | 0 | logfile |
✔ | 7NZM | 12665 | 2023-11-14 | 2021-03-24 | 3.96 | 6.56 | 4.22 | 4.2 | 0.007 | 1.12 | 0.0 | 0.06 | 13.94 | 0.01 | 1.774 | 11.10 | 0.00 | 3.8 | 96.2 | 0.0 | -1.56 | 0.77 | 0.51 | -0.04 | 4.3 | 0.003 | 0.74 | 0.0 | 0.04 | 15.04 | 0.00 | 2.061 | 18.47 | 0.21 | 2.9 | 97.1 | 0.0 | 0.28 | 1.50 | 0.94 | 0.84 | 0.28 | 9109 | 1157 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 5VZL | 8749 | 2023-11-16 | 2017-05-29 | 3.9 | 4.38 | — | 19.0 | 0.006 | 0.96 | 0.0 | 0.05 | 14.28 | 0.01 | 2.216 | 7.72 | 0.25 | 8.4 | 91.6 | 0.0 | -4.13 | 0.31 | 0.03 | -0.03 | 15.0 | 0.004 | 0.84 | 0.0 | 0.04 | 16.50 | 0.00 | 1.185 | 19.55 | 0.50 | 8.3 | 91.7 | 0.0 | -2.28 | 2.17 | 0.41 | 0.23 | 0.55 | 13915 | 1451 | 3 | 115 | 1 | 0 | 0 | logfile |
✔ | 7oPE | 13017 | 2023-11-21 | 2021-05-31 | 3.2 | 5.30 | 3.21 | 5.0 | 0.011 | 1.04 | 2.0 | 0.06 | 15.48 | 0.01 | 1.028 | 4.81 | 0.23 | 8.2 | 91.6 | 0.2 | -3.62 | 0.89 | 0.72 | -0.03 | 5.0 | 0.003 | 0.73 | 0.0 | 0.04 | 17.34 | 0.01 | 2.040 | 25.18 | 1.03 | 6.9 | 92.9 | 0.1 | -1.63 | 1.99 | 0.93 | 0.87 | 0.28 | 93862 | 3818 | 33 | 2996 | 0 | 0 | 0 | logfile |
✔ | 8HAo | 34598 | 2023-11-17 | 2022-10-26 | 3.76 | 3.06 | 3.49 | 3.8 | 0.003 | 0.50 | 0.0 | 0.04 | 15.90 | 0.00 | 1.785 | 5.73 | 0.40 | 2.9 | 96.9 | 0.2 | 1.91 | 0.58 | 0.52 | -0.03 | 3.8 | 0.004 | 0.87 | 0.0 | 0.05 | 17.30 | 0.00 | 2.050 | 18.94 | 0.80 | 4.4 | 95.6 | 0.1 | 0.27 | 1.23 | 0.65 | 0.69 | 0.83 | 18479 | 2314 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J7A | 2660 | 2023-11-17 | 2014-06-03 | 3.2 | 3.24 | 3.33 | 3.2 | 0.008 | 1.39 | 49.0 | 0.10 | 19.81 | 0.01 | 1.715 | 4.56 | 15.41 | 10.5 | 85.4 | 4.2 | -2.49 | 0.31 | 0.55 | -0.02 | 3.2 | 0.005 | 0.78 | 0.0 | 0.04 | 18.32 | 0.01 | 1.844 | 18.64 | 0.91 | 9.4 | 89.4 | 1.2 | -2.11 | 2.71 | 0.40 | 0.77 | 0.99 | 68866 | 4106 | 35 | 1682 | 69 | 0 | 0 | logfile |
✔ | 8ERL | 28554 | 2023-11-14 | 2022-10-12 | 3.9 | 4.58 | 3.40 | 4.1 | 0.005 | 1.28 | 0.0 | 0.07 | 15.42 | 0.01 | 2.296 | 4.84 | 0.27 | 9.5 | 90.5 | 0.0 | -3.82 | 0.86 | 0.76 | -0.02 | 4.1 | 0.003 | 0.78 | 0.0 | 0.04 | 15.62 | 0.00 | 2.101 | 21.34 | 0.27 | 9.5 | 90.5 | 0.0 | -2.63 | 1.05 | 0.87 | 0.78 | -0.50 | 6600 | 830 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q1Z | 13776 | 2023-11-18 | 2021-10-22 | 3.4 | 2.41 | — | 4.0 | 0.004 | 0.61 | 0.0 | 0.04 | 12.71 | 0.00 | 2.074 | 6.27 | 0.04 | 2.2 | 97.8 | 0.0 | 0.60 | 0.48 | 0.31 | -0.02 | 2.1 | 0.006 | 0.85 | 0.0 | 0.05 | 15.89 | 0.01 | 2.073 | 12.66 | 0.94 | 4.4 | 95.6 | 0.0 | -0.31 | 1.64 | 0.75 | 0.76 | 1.74 | 23694 | 2916 | 21 | 0 | 63 | 0 | 0 | logfile |
✔ | 7TR8 | 26082 | 2023-11-21 | 2022-01-28 | 3.6 | 4.39 | — | 4.1 | 0.002 | 0.54 | 0.0 | 0.04 | 14.37 | 0.00 | 2.037 | 11.91 | 0.03 | 7.5 | 92.2 | 0.4 | -1.00 | 0.75 | 0.46 | -0.02 | 4.1 | 0.003 | 0.85 | 0.0 | 0.05 | 16.82 | 0.01 | 2.069 | 23.21 | 0.26 | 7.9 | 91.8 | 0.3 | -1.86 | 2.22 | 0.83 | 0.71 | 0.38 | 33581 | 4192 | 18 | 45 | 2 | 0 | 0 | logfile |
✘ | 7ZNK | 14804 | 2023-11-20 | 2022-04-21 | 3.9 | 6.01 | — | 7.4 | 0.006 | 0.88 | 2.0 | 0.05 | 11.83 | 0.01 | 1.707 | 9.96 | 5.83 | 6.4 | 93.3 | 0.3 | -2.12 | 0.73 | 0.46 | 0.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 88261 | 11599 | 32 | 6 | 0 | 0 | 0 | logfile |