Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5VZL	8749	2021-06-02	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	14.28	0.01	2.216	7.72	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	4.3	0.005	0.84	0.0	0.04	16.49	0.01	1.269	19.59	1.00	9.1	90.9	0.0	-2.29	2.41	0.43	0.27	0.28	13915	1451	3	115	1	0	0	logfile
✔	3J7A	2660	2021-06-01	2014-06-03	3.2	3.24	3.33	3.2	0.008	1.40	49.0	0.10	19.80	0.01	1.715	4.44	15.41	10.5	85.4	4.2	-2.49	0.31	0.55	-0.02	3.2	0.003	0.68	0.0	0.04	18.17	0.01	1.935	16.40	0.97	8.5	90.3	1.2	-1.86	2.70	0.40	0.78	0.99	68866	4106	35	1682	69	0	0	logfile
✔	7D58	30577	2021-06-04	2020-09-25	2.9	3.51	—	5.3	0.002	0.66	0.0	0.54	13.94	0.00	2.139	8.18	0.09	5.8	94.2	0.0	-3.64	0.55	0.24	-0.02	3.4	0.006	1.22	0.0	0.16	18.30	0.01	2.124	12.97	2.82	5.7	94.3	0.0	-1.40	2.70	0.83	0.84	1.63	40568	4980	26	46	8	0	0	logfile
✘	3J5Q	5776	2021-06-02	2013-10-28	3.8	4.64	—	7.1	0.010	1.45	0.0	0.09	20.92	0.01	0.275	102.90	29.72	6.4	93.1	0.5	-0.53	0.58	0.44	-0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18264	2324	8	0	168	0	0	logfile
✘	6RBE	4794	2021-06-02	2019-04-10	3.8	4.03	3.73	40.0	0.007	1.27	0.0	0.06	18.44	0.01	2.076	9.09	1.35	11.9	86.8	1.2	-4.17	0.25	0.03	0.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72721	4512	33	1750	0	0	0	logfile
✔	6RWE	10038	2021-06-05	2019-06-04	3.0	3.12	—	3.7	0.009	1.02	1.0	0.06	13.12	0.01	1.975	6.72	0.73	7.4	92.5	0.1	-4.84	0.44	0.32	0.00	3.1	0.003	0.74	0.0	0.04	18.28	0.01	2.110	11.93	2.38	5.1	94.9	0.0	-0.92	1.64	0.76	0.80	1.64	53719	6454	26	95	8	0	0	logfile
✔	6CRZ	7577	2021-06-03	2018-03-19	3.3	3.42	3.35	4.5	0.007	0.96	0.0	0.06	9.21	0.01	2.254	6.75	0.04	7.8	92.2	0.0	-4.10	0.39	0.17	0.01	3.4	0.003	0.69	0.0	0.04	13.57	0.01	2.188	10.32	0.18	5.2	94.8	0.1	-1.36	1.83	0.68	0.69	1.11	25909	3205	6	0	66	0	0	logfile
✔	6EK0	3883	2021-06-04	2017-09-24	2.9	3.27	—	40.0	0.012	1.17	0.0	0.06	16.22	0.03	0.883	4.05	0.81	9.4	90.4	0.3	-5.00	0.02	0.00	0.01	3.2	0.003	0.85	0.0	0.04	17.81	0.01	1.161	18.81	2.80	10.0	90.0	0.0	-2.46	2.06	0.13	0.18	-0.07	219596	11719	128	5861	415	61	0	logfile
✔	6QYM	4679	2021-06-03	2019-03-09	3.6	3.25	—	4.0	0.007	0.89	0.0	0.05	9.66	0.01	2.201	8.77	0.00	6.5	93.5	0.0	-4.63	0.62	0.60	0.02	3.5	0.005	1.00	0.0	0.05	17.61	0.01	2.060	29.73	1.35	5.5	94.5	0.0	-1.10	2.40	0.69	0.67	-0.33	26880	3360	12	0	0	0	0	logfile
✔	6TZ4	20588	2021-06-03	2019-08-10	3.2	3.81	3.16	3.7	0.010	0.48	0.0	0.04	8.47	0.00	2.212	3.81	0.00	1.4	98.6	0.0	-0.10	0.51	0.57	0.03	3.6	0.004	0.89	2.0	0.04	18.00	0.00	2.031	17.29	0.64	1.4	98.6	0.0	2.64	1.72	0.60	0.85	0.40	99216	12852	72	0	0	0	0	logfile
✔	6oiG	20077	2021-06-05	2019-04-09	3.8	5.08	—	5.0	0.011	1.45	2.0	0.07	19.62	0.01	0.087	53.41	1.20	15.9	83.9	0.2	-5.09	0.77	0.48	0.04	4.9	0.010	1.01	6.0	0.05	18.80	0.01	1.442	33.72	1.00	13.5	86.3	0.2	-2.92	3.16	0.90	0.86	0.00	129140	6757	48	3522	116	0	0	logfile
✔	6XSS	22305	2021-06-01	2020-07-16	3.7	3.37	—	3.3	0.003	0.63	0.0	0.04	12.31	0.00	1.843	28.15	0.00	2.5	97.5	0.0	-0.32	0.74	0.78	0.04	3.3	0.004	0.86	0.0	0.04	17.64	0.00	2.286	17.42	0.61	1.2	98.8	0.0	2.12	2.01	0.75	0.79	-0.03	8048	1040	4	0	0	0	0	logfile
✔	6LTJ	0974	2021-06-04	2020-01-22	3.7	4.16	—	15.0	0.010	1.08	12.0	0.07	22.08	0.01	2.173	13.82	2.63	6.4	93.3	0.3	-3.67	0.46	0.09	0.04	3.6	0.007	0.93	0.0	0.04	22.31	0.01	1.525	21.73	0.13	4.0	96.0	0.0	-0.04	1.73	0.60	0.30	0.52	34283	3656	21	238	1	0	0	logfile
✔	6K9F	9948	2021-06-02	2019-06-15	3.7	7.50	4.15	7.2	0.002	0.45	0.0	0.03	11.87	0.00	2.356	5.29	0.00	0.0	100.0	0.0	-0.68	0.66	0.76	0.04	4.7	0.004	1.20	0.0	0.05	17.60	0.00	1.955	30.85	0.42	1.5	98.5	0.0	-0.35	3.87	0.67	0.84	0.32	8484	1044	12	0	0	0	0	logfile
✔	6RUo	10007	2021-06-05	2019-05-28	3.5	3.56	—	4.0	0.007	1.05	0.0	0.06	13.11	0.01	2.170	7.92	0.40	10.5	89.4	0.1	-4.99	0.53	0.29	0.05	3.5	0.006	0.86	0.0	0.05	17.37	0.01	1.769	16.03	0.51	6.8	93.2	0.0	-2.21	2.46	0.68	0.59	0.56	50792	6086	26	93	8	0	0	logfile
✔	6F1V	4170	2021-06-01	2017-11-23	3.4	4.10	—	3.7	0.014	1.86	0.0	0.09	11.72	0.01	2.246	13.19	0.18	11.1	88.7	0.2	-3.46	0.46	0.69	0.05	3.6	0.003	0.72	0.0	0.04	15.71	0.00	2.262	13.48	0.36	5.8	94.2	0.0	1.77	1.79	0.48	0.75	0.89	5164	628	2	0	0	0	0	logfile
✔	6Q2o	20576	2021-06-02	2019-08-08	3.65	3.77	—	3.9	0.004	0.78	0.0	0.05	8.38	0.01	1.534	3.25	0.12	5.6	94.4	0.0	-3.75	0.48	0.23	0.05	3.6	0.003	0.76	0.0	0.04	15.17	0.01	2.116	13.11	0.78	5.6	94.4	0.0	-1.52	2.38	0.69	0.66	0.90	15196	1900	8	0	20	0	0	logfile
✔	6J5T	0680	2021-06-05	2019-01-12	3.4	3.94	—	3.0	0.011	1.21	0.0	0.07	11.63	0.01	2.233	6.99	0.59	11.3	88.4	0.3	-4.25	0.83	0.67	0.05	3.0	0.003	0.81	0.0	0.05	15.55	0.00	2.098	16.76	0.25	9.3	90.6	0.1	-1.30	1.81	0.91	0.85	1.39	53488	6640	25	0	15	0	0	logfile
✔	6N1i	8903	2021-06-02	2018-11-08	3.58	3.63	—	3.6	0.009	1.13	0.0	0.06	9.87	0.01	1.147	26.83	0.00	2.4	97.6	0.0	-6.04	0.42	0.58	0.05	3.6	0.003	0.74	0.0	0.04	17.87	0.00	2.171	14.83	0.71	4.3	95.7	0.0	0.42	2.41	0.56	0.82	2.03	11136	1360	16	0	0	0	0	logfile
✔	6N1H	8902	2021-06-02	2018-11-08	3.17	3.22	—	3.2	0.006	1.13	0.0	0.06	12.23	0.01	0.657	30.92	3.97	7.4	92.6	0.0	-7.22	0.39	0.46	0.05	3.2	0.004	0.74	0.0	0.04	17.78	0.01	2.144	10.78	2.87	7.0	93.0	0.0	0.64	4.69	0.63	0.85	2.38	10991	1328	16	0	0	0	0	logfile

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