Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3J80	2764	2023-11-19	2014-08-28	3.75	3.87	3.84	3.8	0.007	1.36	43.0	0.11	22.30	0.01	1.747	9.35	13.53	12.2	83.2	4.6	-2.33	0.79	0.86	0.90	3.7	0.006	0.83	0.0	0.04	20.44	0.01	1.747	23.97	1.52	11.6	87.0	1.4	-1.87	1.63	0.78	0.82	0.71	77716	5039	41	1779	70	0	0	logfile
✔	3J81	2763	2023-11-20	2014-08-29	4.0	4.19	—	4.0	0.007	1.30	64.0	0.10	22.05	0.01	1.076	7.72	12.47	11.6	83.5	4.9	-2.31	0.79	0.84	—	4.0	0.004	0.80	0.0	0.04	20.75	0.01	1.810	24.19	0.84	11.1	87.5	1.4	-1.88	2.08	0.79	0.82	—	83760	5686	48	1876	84	0	0	logfile
✔	3J89	6123	2023-11-14	2014-10-07	3.6	2.21	—	3.5	0.022	1.64	0.0	0.10	11.97	0.01	2.578	2.11	0.00	3.5	96.5	0.0	-0.96	0.83	0.81	0.77	3.2	0.003	0.49	0.0	0.03	20.68	0.00	2.114	8.31	1.00	0.6	99.4	0.0	3.03	1.98	0.81	0.79	0.31	9025	551	19	0	0	0	4598	logfile
✔	3J8A	6124	2023-11-16	2014-10-08	3.7	3.90	—	3.8	0.006	1.27	0.0	0.05	14.88	0.01	2.145	19.64	6.28	11.2	87.4	1.4	-5.31	0.73	0.80	2.48	3.8	0.005	0.85	0.0	0.05	16.48	0.00	1.896	16.54	1.49	7.6	91.5	0.8	-2.43	1.23	0.72	0.83	1.71	15800	1835	12	0	280	0	0	logfile
✘	3J8H	2807	2023-11-14	2014-10-26	3.8	3.95	—	3.8	0.006	1.31	4.0	0.05	10.89	0.01	1.488	33.49	2.47	5.3	92.8	1.9	-2.06	0.65	0.64	1.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	111160	12796	12	0	2276	0	0	logfile
✔	3J8i	6179	2023-11-16	2014-11-06	4.7	4.79	—	4.7	0.018	1.67	0.0	0.11	19.47	0.01	2.125	76.17	14.53	6.4	87.5	6.1	-1.59	0.66	0.76	—	4.7	0.003	0.92	0.0	0.04	14.37	0.00	2.050	17.08	0.00	11.4	88.1	0.5	-1.97	1.76	0.64	0.70	—	14800	1875	10	0	10	0	0	logfile
✔	3J94	6204	2023-11-18	2014-12-05	4.2	2.69	—	3.1	0.009	1.97	0.0	0.07	15.84	0.01	1.261	31.36	5.87	5.0	93.0	2.0	2.31	0.83	0.77	—	2.7	0.003	0.78	0.0	0.04	13.87	0.00	1.688	15.00	0.00	4.8	94.7	0.5	0.39	2.62	0.85	0.80	—	21509	2895	12	0	11	0	0	logfile
✔	3J9D	6239	2023-11-13	2015-01-09	3.3	2.70	—	3.4	0.027	2.04	0.0	0.08	20.57	0.01	2.034	23.66	24.92	8.2	89.6	2.2	-3.64	0.81	0.89	2.90	3.3	0.022	0.83	0.0	0.04	17.52	0.00	2.197	15.77	0.60	7.4	91.9	0.7	-1.61	2.37	0.75	0.84	2.85	6086	746	1	0	1	0	0	logfile
✔	3J9E	6240	2023-11-13	2015-01-10	3.3	2.66	—	3.3	0.032	3.28	0.0	0.09	21.31	0.02	1.223	20.81	24.26	9.8	87.3	2.9	-3.41	0.77	0.88	3.26	3.3	0.004	0.78	0.0	0.04	17.71	0.00	2.103	10.58	0.46	7.9	91.5	0.6	0.80	1.24	0.72	0.85	3.33	4098	520	1	0	0	0	0	logfile
✔	3J9J	5778	2023-11-18	2015-02-02	3.275	3.52	3.19	3.6	0.015	1.08	0.0	0.09	9.35	0.01	2.266	2.70	0.00	3.3	94.5	2.2	-0.65	0.53	0.57	2.57	3.5	0.004	0.66	0.0	0.04	15.76	0.00	1.889	14.38	0.17	6.8	92.7	0.5	2.20	3.87	0.59	0.77	1.93	21068	1260	4	0	0	0	10624	logfile
✔	3J9L	2871	2023-11-14	2015-02-04	4.0	4.10	—	4.0	0.022	1.96	105.0	0.12	19.47	0.01	1.058	81.48	27.30	10.5	88.6	0.9	-4.09	0.66	0.68	—	4.0	0.048	3.15	43.0	0.12	19.35	0.02	1.814	99.41	4.32	39.9	58.2	1.9	-7.71	2.86	0.73	0.81	—	112951	8688	31	0	8320	0	0	logfile
✔	3J9P	6267	2023-11-16	2015-02-14	4.24	2.59	—	4.1	0.009	1.85	4.0	0.07	17.68	0.01	2.113	26.35	4.64	10.2	88.2	1.6	-3.58	0.73	0.78	—	4.2	0.004	0.99	0.0	0.04	13.80	0.00	2.128	17.46	0.00	8.5	90.8	0.7	-1.73	1.17	0.73	0.80	—	16952	2240	4	0	0	0	0	logfile
✘	3J9Q	6270	2023-11-22	2015-02-17	3.5	3.51	—	3.5	0.008	1.16	0.0	0.06	14.05	0.00	2.284	4.67	8.68	19.1	75.1	5.8	-5.24	0.60	0.82	2.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	99648	13224	48	0	0	0	0	logfile
✔	3J9S	6272	2023-11-14	2015-02-19	2.6	3.83	—	3.5	0.020	1.80	0.0	0.12	18.55	0.01	0.216	25.10	6.86	1.3	98.0	0.8	1.97	0.68	0.76	3.15	3.5	0.003	0.62	0.0	0.04	17.43	0.00	1.145	9.20	1.43	1.5	98.5	0.0	1.37	1.90	0.70	0.89	3.19	9813	1191	3	0	15	315	0	logfile
✔	3J9X	6310	2023-11-17	2015-03-21	3.8	3.84	—	3.8	0.014	1.24	0.0	0.08	13.09	0.02	2.369	3.42	0.48	2.8	95.6	1.6	-0.65	0.51	0.57	0.45	3.7	0.004	0.74	0.0	0.04	16.24	0.01	2.066	20.46	0.31	2.0	98.0	0.0	1.89	1.20	0.63	0.78	1.89	70702	7424	60	696	0	0	0	logfile
✘	3JA8	6338	2023-11-20	2015-05-09	3.8	3.83	—	3.8	0.014	1.57	0.0	0.06	10.98	0.01	1.749	29.23	0.37	7.9	91.0	1.1	-4.26	0.68	0.80	2.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29838	3786	12	0	6	0	0	logfile
✔	3JAC	6343	2023-11-16	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	57.64	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.69	0.0	0.06	13.69	0.01	1.923	77.11	0.00	27.1	71.7	1.2	-5.31	3.69	0.54	0.61	—	15741	1716	3	0	1038	0	0	logfile
✔	3JAD	6344	2023-11-15	2015-06-08	3.9	2.16	—	3.8	0.008	1.33	0.0	0.06	8.45	0.00	2.250	16.87	0.43	2.7	97.3	0.0	-2.13	0.68	0.72	0.33	3.0	0.003	0.76	0.0	0.04	12.95	0.00	2.195	16.00	0.17	4.0	96.0	0.0	0.22	1.23	0.70	0.77	0.37	12705	1685	15	0	15	0	0	logfile
✔	3JAE	6345	2023-11-15	2015-06-08	3.9	2.88	—	3.5	0.006	1.26	0.0	0.05	9.27	0.01	2.202	13.69	0.00	0.9	99.1	0.0	-1.69	0.70	0.74	1.87	3.2	0.003	0.87	0.0	0.04	13.61	0.00	2.157	15.62	0.16	2.8	97.2	0.0	0.08	1.49	0.72	0.82	1.59	12825	1690	10	0	10	0	0	logfile
✘	3JAF	6346	2023-11-16	2015-06-08	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13865	1710	15	0	15	0	0	logfile

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