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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5G2Y | 3332 | 2023-02-20 | 2016-04-16 | 4.5 | 4.38 | — | 3.8 | 0.001 | 0.22 | 0.0 | 0.01 | 11.90 | 0.00 | 2.269 | 2.32 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.58 | 0.28 | — | 3.7 | 0.007 | 1.02 | 0.0 | 0.05 | 23.60 | 0.01 | 1.933 | 73.59 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.96 | 0.89 | 0.78 | — | 13494 | 0 | 1 | 630 | 0 | 0 | 0 | logfile |
✔ | 5GAM | 8011 | 2023-02-23 | 2015-12-15 | 3.7 | 4.03 | — | 3.9 | 0.008 | 1.49 | 11.0 | 0.10 | 19.79 | 0.01 | 1.976 | 11.76 | 6.60 | 10.0 | 88.2 | 1.8 | -2.90 | 0.72 | 0.57 | 1.24 | 3.9 | 0.004 | 0.88 | 0.0 | 0.05 | 18.91 | 0.01 | 2.099 | 17.67 | 0.49 | 6.9 | 92.9 | 0.2 | -1.12 | 1.70 | 0.80 | 0.79 | 1.10 | 19123 | 2002 | 13 | 166 | 19 | 0 | 0 | logfile |
✔ | 5GAP | 8014 | 2023-02-27 | 2015-12-15 | 3.6 | 3.65 | — | 3.6 | 0.008 | 1.51 | 26.0 | 0.09 | 17.39 | 0.01 | 2.143 | 7.18 | 4.23 | 8.8 | 89.7 | 1.5 | -1.15 | 0.48 | 0.48 | 1.61 | 3.6 | 0.003 | 0.75 | 0.0 | 0.04 | 17.58 | 0.00 | 2.074 | 14.43 | 0.49 | 5.0 | 94.9 | 0.1 | 0.53 | 2.22 | 0.66 | 0.78 | 1.17 | 31576 | 3503 | 12 | 143 | 82 | 0 | 0 | logfile |
✔ | 5GAQ | 8015 | 2023-02-23 | 2016-01-05 | 3.1 | 3.36 | — | 3.2 | 0.006 | 1.01 | 0.0 | 0.08 | 11.97 | 0.00 | 2.289 | 1.94 | 0.80 | 7.3 | 92.7 | 0.0 | -3.69 | 0.56 | 0.50 | 3.88 | 3.2 | 0.006 | 0.66 | 0.0 | 0.05 | 16.40 | 0.00 | 2.147 | 14.03 | 0.84 | 3.8 | 96.2 | 0.0 | -1.76 | 1.64 | 0.78 | 0.84 | 3.64 | 20574 | 2592 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 5GJV | 9513 | 2023-02-24 | 2016-07-02 | 3.6 | 3.69 | — | 3.7 | 0.013 | 1.60 | 32.0 | 0.08 | 14.75 | 0.01 | 1.695 | 18.01 | 4.57 | 11.6 | 86.4 | 2.0 | -5.08 | 0.54 | 0.79 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21904 | 2661 | 14 | 0 | 43 | 0 | 0 | logfile |
✘ | 5GJW | 9515 | 2023-02-23 | 2016-07-02 | 3.9 | 4.02 | — | 4.0 | 0.011 | 1.50 | 20.0 | 0.08 | 11.50 | 0.01 | 1.844 | 12.82 | 1.50 | 12.8 | 85.5 | 1.7 | -5.28 | 0.55 | 0.80 | 1.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21561 | 2676 | 14 | 0 | 29 | 0 | 0 | logfile |
✘ | 5GW4 | 9540 | 2023-02-24 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.49 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 5GW5 | 9541 | 2023-02-24 | 2016-09-08 | 4.6 | 4.75 | — | 4.7 | 0.002 | 0.58 | 0.0 | 0.04 | 7.37 | 0.00 | 2.136 | 6.87 | 0.01 | 4.5 | 95.4 | 0.1 | -3.73 | 0.74 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 5H1B | 9566 | 2023-02-18 | 2016-10-08 | 4.4 | 3.94 | — | 3.6 | 0.010 | 1.41 | 0.0 | 0.06 | 13.44 | 0.01 | 1.503 | 54.25 | 5.67 | 6.2 | 91.1 | 2.6 | -1.51 | 0.59 | 0.70 | — | 3.6 | 0.003 | 0.71 | 0.0 | 0.04 | 13.65 | 0.00 | 1.991 | 15.71 | 0.00 | 4.5 | 94.6 | 0.9 | 0.68 | 2.98 | 0.65 | 0.82 | — | 7359 | 924 | 7 | 9 | 6 | 0 | 0 | logfile |
✔ | 5H1C | 9567 | 2023-02-18 | 2016-10-08 | 4.5 | 4.34 | — | 3.8 | 0.009 | 1.30 | 0.0 | 0.05 | 14.98 | 0.00 | 1.454 | 41.46 | 4.44 | 4.9 | 92.8 | 2.3 | -2.37 | 0.52 | 0.66 | — | 3.8 | 0.002 | 0.63 | 0.0 | 0.04 | 15.12 | 0.00 | 1.965 | 12.11 | 0.00 | 4.2 | 94.8 | 1.0 | 0.67 | 1.57 | 0.58 | 0.82 | — | 7602 | 933 | 8 | 18 | 6 | 0 | 0 | logfile |
✔ | 5H1Q | 9570 | 2023-02-24 | 2016-10-11 | 3.3 | 3.90 | — | 4.0 | 0.008 | 1.04 | 0.0 | 0.06 | 11.65 | 0.00 | 1.998 | 16.22 | 0.31 | 12.6 | 86.8 | 0.6 | -5.07 | 0.44 | 0.69 | 3.01 | 3.9 | 0.003 | 0.80 | 0.0 | 0.04 | 16.46 | 0.00 | 2.145 | 9.68 | 1.01 | 9.7 | 89.8 | 0.6 | -0.31 | 0.82 | 0.55 | 0.79 | 1.85 | 23784 | 2888 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 5H3o | 6656 | 2023-02-22 | 2016-10-26 | 3.5 | 3.66 | — | 3.6 | 0.015 | 1.48 | 4.0 | 0.08 | 16.00 | 0.01 | 2.235 | 19.87 | 6.55 | 6.0 | 93.4 | 0.6 | -3.19 | 0.78 | 0.86 | 1.93 | 3.6 | 0.003 | 0.73 | 0.0 | 0.04 | 17.32 | 0.00 | 1.733 | 13.35 | 0.43 | 3.0 | 97.0 | 0.0 | 0.89 | 0.82 | 0.73 | 0.81 | 1.00 | 16958 | 2040 | 8 | 0 | 7 | 0 | 0 | logfile |
✔ | 5Hi9 | 6580 | 2023-02-23 | 2016-01-11 | 4.4 | 4.53 | — | 4.4 | 0.009 | 1.46 | 20.0 | 0.09 | 13.13 | 0.01 | 2.033 | 23.50 | 0.93 | 7.7 | 91.4 | 0.8 | -4.25 | 0.73 | 0.73 | — | 4.4 | 0.003 | 0.83 | 0.0 | 0.04 | 13.58 | 0.00 | 2.108 | 18.66 | 0.00 | 8.1 | 91.9 | 0.0 | -1.85 | 2.49 | 0.76 | 0.78 | — | 19636 | 2408 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5i08 | 8069 | 2023-02-24 | 2016-02-03 | 4.04 | 4.14 | 3.96 | 4.1 | 0.014 | 1.74 | 3.0 | 0.09 | 8.79 | 0.01 | 2.174 | 3.14 | 0.00 | 7.0 | 92.1 | 0.8 | 0.56 | 0.70 | 0.71 | — | 4.1 | 0.004 | 0.82 | 0.0 | 0.04 | 12.40 | 0.01 | 2.154 | 10.44 | 0.08 | 10.5 | 88.9 | 0.6 | -1.62 | 1.62 | 0.74 | 0.80 | — | 22683 | 2874 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 5iRX | 8117 | 2023-02-21 | 2016-03-14 | 2.95 | 3.39 | 2.91 | 3.3 | 0.014 | 1.44 | 0.0 | 0.07 | 15.36 | 0.01 | 1.744 | 9.65 | 0.00 | 10.7 | 89.2 | 0.1 | -6.45 | 0.67 | 0.77 | 3.80 | 3.4 | 0.004 | 0.73 | 0.0 | 0.04 | 16.65 | 0.00 | 2.241 | 8.73 | 1.73 | 8.2 | 91.8 | 0.0 | -0.58 | 0.68 | 0.62 | 0.82 | 1.93 | 13162 | 1726 | 12 | 0 | 20 | 0 | 0 | logfile |
✔ | 5iRZ | 8118 | 2023-02-20 | 2016-03-15 | 3.28 | 3.63 | 3.24 | 3.5 | 0.010 | 1.31 | 0.0 | 0.23 | 16.19 | 0.00 | 2.008 | 9.02 | 0.00 | 7.5 | 92.5 | 0.0 | -5.78 | 0.68 | 0.77 | 4.48 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 15.99 | 0.00 | 2.158 | 8.90 | 0.28 | 7.1 | 92.9 | 0.0 | 0.91 | 0.68 | 0.65 | 0.84 | 2.94 | 12504 | 1576 | 8 | 0 | 24 | 0 | 0 | logfile |
✘ | 5iS0 | 8119 | 2023-02-20 | 2016-03-15 | 3.43 | 3.36 | 3.37 | 3.2 | 0.015 | 1.24 | 0.0 | 0.06 | 10.52 | 0.01 | 1.283 | 5.42 | 0.00 | 10.1 | 89.7 | 0.3 | -5.27 | 0.63 | 0.73 | 2.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11808 | 1576 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 5JLF | 8162 | 2023-02-21 | 2016-04-27 | 3.6 | 3.99 | — | 3.7 | 0.013 | 1.58 | 17.0 | 0.11 | 12.26 | 0.01 | 2.184 | 9.01 | 1.29 | 2.9 | 96.6 | 0.6 | -0.70 | 0.67 | 0.69 | 2.49 | 3.7 | 0.005 | 0.78 | 0.0 | 0.04 | 15.12 | 0.00 | 1.912 | 15.75 | 0.91 | 4.2 | 95.5 | 0.3 | -0.11 | 1.42 | 0.70 | 0.75 | 1.94 | 15800 | 1835 | 12 | 0 | 280 | 0 | 0 | logfile |
✔ | 5JLF | 8163 | 2023-02-21 | 2016-04-27 | 3.6 | 3.82 | — | 3.7 | 0.013 | 1.58 | 17.0 | 0.11 | 12.26 | 0.01 | 2.184 | 9.01 | 1.29 | 2.9 | 96.6 | 0.6 | -0.70 | 0.64 | 0.74 | 2.52 | 3.7 | 0.003 | 0.72 | 0.0 | 0.04 | 15.21 | 0.00 | 1.982 | 12.28 | 0.52 | 3.4 | 96.3 | 0.3 | 0.12 | 1.43 | 0.68 | 0.83 | 1.85 | 15800 | 1835 | 12 | 0 | 280 | 0 | 0 | logfile |
✔ | 5K0Z | 8191 | 2023-02-19 | 2016-05-17 | 2.8 | 4.15 | — | 2.8 | 0.011 | 1.04 | 0.0 | 0.06 | 10.64 | 0.01 | 2.056 | 18.30 | 0.00 | 2.9 | 97.1 | 0.0 | -4.11 | 0.73 | 0.58 | 1.27 | 3.1 | 0.005 | 1.15 | 0.0 | 0.06 | 17.03 | 0.01 | 2.099 | 33.56 | 4.91 | 4.5 | 95.5 | 0.0 | -0.35 | 1.52 | 0.87 | 0.84 | 1.07 | 9749 | 1268 | 8 | 0 | 0 | 41 | 0 | logfile |