Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3JCZ	6630	2023-08-17	2016-03-27	3.26	3.11	—	3.3	0.008	0.69	0.0	0.05	7.32	0.01	2.244	8.75	0.00	7.0	93.0	0.0	-4.42	0.77	0.85	4.34	3.3	0.003	0.61	0.0	0.04	13.77	0.00	2.108	9.79	0.28	4.4	95.6	0.0	-0.27	2.05	0.78	0.87	2.10	23286	2976	6	0	0	0	0	logfile
✔	3JD0	6631	2023-08-17	2016-03-28	3.47	3.93	—	3.8	0.012	0.82	0.0	0.05	10.31	0.00	1.989	15.40	0.00	13.3	85.9	0.8	-5.89	0.85	0.82	3.48	3.8	0.004	0.70	0.0	0.04	14.28	0.00	2.128	14.60	0.16	4.9	94.9	0.1	0.69	2.53	0.85	0.86	2.35	23478	2976	12	0	6	0	0	logfile
✔	3JD1	6634	2023-08-17	2016-03-28	3.3	2.71	—	3.0	0.015	1.01	0.0	0.06	8.10	0.01	1.935	12.60	0.00	8.2	91.6	0.2	-5.08	0.79	0.80	3.01	2.5	0.004	0.68	0.0	0.04	15.21	0.00	2.159	9.66	0.28	2.8	97.2	0.0	0.47	1.81	0.80	0.85	2.00	23814	2976	12	0	12	0	0	logfile
✔	3JD2	6635	2023-08-17	2016-03-28	3.3	2.95	—	2.9	0.011	1.04	0.0	0.06	8.84	0.01	2.219	10.21	0.72	5.6	93.6	0.8	-5.54	0.80	0.83	3.54	2.8	0.004	0.60	0.0	0.04	14.29	0.00	2.187	9.17	0.44	4.1	95.9	0.0	0.18	1.19	0.81	0.87	2.36	23814	2976	12	0	12	0	0	logfile
✔	3JD3	6632	2023-08-18	2016-03-28	3.6	3.38	—	3.5	0.011	1.02	0.0	0.06	11.40	0.01	2.125	18.17	0.00	10.7	89.3	0.0	-5.32	0.81	0.80	2.72	3.2	0.003	0.65	0.0	0.04	15.34	0.00	2.140	12.61	0.28	4.0	96.0	0.0	-0.42	1.00	0.81	0.83	2.27	24006	2976	12	0	18	0	0	logfile
✔	3JD4	6633	2023-08-18	2016-03-28	3.4	3.40	—	3.4	0.009	0.96	0.0	0.05	10.21	0.00	2.157	15.60	0.00	6.8	93.0	0.2	-4.82	0.80	0.86	3.90	3.4	0.004	0.63	0.0	0.04	15.60	0.00	2.026	11.75	0.32	3.9	96.1	0.0	0.50	0.72	0.80	0.87	2.40	24054	2982	12	0	18	0	0	logfile
✔	3JD6	6425	2023-08-25	2016-04-12	4.1	5.00	—	4.6	0.026	2.70	32.0	0.12	14.71	0.02	1.693	5.06	0.00	13.3	86.1	0.6	-3.14	0.60	0.42	—	4.3	0.004	0.73	0.0	0.04	13.73	0.00	1.904	14.36	0.00	17.3	82.7	0.0	-2.33	2.17	0.85	0.80	—	43088	2672	16	0	0	0	21216	logfile
✔	3JD8	6640	2023-08-11	2016-05-01	4.43	4.58	—	4.4	0.015	1.56	5.0	0.13	16.87	0.02	1.335	78.13	11.82	11.9	79.7	8.4	-3.27	0.54	0.62	—	4.4	0.005	0.96	0.0	0.05	12.46	0.00	2.015	23.00	0.00	9.8	89.4	0.8	-1.20	1.21	0.57	0.73	—	8050	1133	7	0	25	0	0	logfile
✔	3KTT	5148	2023-08-09	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	179.94	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	1.6	0.005	1.21	0.0	0.05	17.07	0.01	2.016	34.63	0.49	11.5	87.3	1.2	-2.51	2.08	0.31	0.43	—	3855	513	1	0	0	0	0	logfile
✔	3LoS	5137	2023-08-12	2010-02-04	4.3	2.98	—	3.0	0.008	2.44	224.0	0.19	19.87	0.01	2.259	87.93	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.2	0.004	1.16	0.0	0.05	15.91	0.01	2.171	27.07	0.03	20.2	75.7	4.1	-4.25	1.37	0.62	0.54	—	63712	8512	16	0	0	0	0	logfile
✘	4CE4	2490	2023-08-13	2013-11-08	4.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65473	3572	40	1437	984	0	0	logfile
✔	4Ci0	2513	2023-08-21	2013-12-05	3.36	3.43	—	3.4	0.014	1.93	24.0	1.74	23.74	0.03	1.915	119.42	39.11	3.4	96.5	0.1	1.78	0.71	0.70	0.31	3.4	0.015	2.77	0.0	0.54	18.70	0.01	2.017	20.78	1.04	4.9	95.1	0.0	-0.76	2.13	0.82	0.87	1.50	83472	10716	72	0	108	0	0	logfile
✔	4UFT	2867	2023-08-14	2015-03-19	4.3	4.24	—	4.2	0.005	0.96	0.0	0.05	11.26	0.00	1.169	8.53	0.31	13.2	83.9	3.0	-4.63	0.54	0.70	—	4.2	0.004	0.78	0.0	0.04	13.25	0.01	2.091	11.84	0.05	8.2	90.7	1.1	-2.58	1.93	0.59	0.79	—	119847	14703	78	234	0	0	0	logfile
✔	4Ui9	2924	2023-08-13	2015-03-27	3.6	3.87	—	3.6	0.016	1.97	124.0	0.11	17.96	0.01	0.849	19.88	11.86	5.3	92.8	1.9	-1.90	0.85	0.73	1.60	3.6	0.003	0.81	0.0	0.04	17.07	0.00	2.102	15.06	0.42	5.4	94.2	0.4	0.87	3.18	0.89	0.83	1.17	66453	8472	25	0	5	0	0	logfile
✔	4UiS	2974	2023-08-12	2015-04-03	4.4	4.48	—	4.4	0.009	1.29	0.0	0.06	9.92	0.01	1.546	24.94	1.19	7.7	87.4	5.0	-2.00	0.50	0.56	—	4.4	0.004	0.80	0.0	0.04	11.88	0.00	2.133	16.76	0.00	9.9	88.9	1.2	-1.58	1.65	0.55	0.73	—	8518	791	5	0	458	0	0	logfile
✔	4UQ8	2676	2023-08-20	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	64.12	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.54	0.0	0.41	5.47	0.00	2.110	23.19	0.00	0.0	0.0	0.0	—	2.11	0.61	0.83	—	28647	33	54	0	5686	0	0	logfile
✔	4UY8	2773	2023-08-22	2014-08-29	3.8	4.07	—	4.1	0.010	1.50	8.0	0.07	15.49	0.01	0.879	12.34	11.16	16.3	76.9	6.8	-5.04	0.53	0.64	0.36	4.0	0.003	0.59	0.0	0.03	17.01	0.00	1.696	54.58	0.93	13.2	84.5	2.3	-3.45	1.60	0.58	0.80	1.11	92995	3468	47	3049	144	439	8	logfile
✔	4V1A	2787	2023-08-21	2014-09-25	3.4	3.43	—	3.4	0.009	1.29	0.0	0.05	13.81	0.01	2.067	12.17	6.03	4.6	95.3	0.1	-2.62	0.37	0.78	1.69	3.4	0.003	0.70	0.0	0.04	16.87	0.00	2.083	10.94	0.29	4.4	95.5	0.1	0.59	1.92	0.38	0.79	1.76	31917	3843	24	0	94	0	0	logfile
✔	4V1W	2788	2023-08-22	2014-10-02	4.7	4.69	—	4.7	0.020	2.45	172.0	0.17	18.97	0.01	2.533	7.94	7.67	3.0	96.5	0.6	-2.40	0.74	0.84	—	4.6	0.004	0.91	0.0	0.04	16.60	0.01	2.039	20.50	0.00	2.4	97.6	0.0	0.57	2.81	0.73	0.76	—	32736	4080	24	0	0	0	0	logfile
✔	4V91	2599	2023-08-16	2014-03-21	3.7	3.84	—	3.8	0.133	4.77	525.0	0.43	20.66	0.07	0.695	17.94	12.79	14.1	78.2	7.8	-5.39	0.33	0.36	0.15	3.8	0.032	1.24	0.0	0.04	17.28	0.01	2.047	15.07	1.04	8.1	91.2	0.7	-2.72	2.02	0.63	0.81	1.43	125665	6450	45	3482	0	0	0	logfile

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