Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5G2Y	3332	2023-02-20	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	11.90	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.02	0.0	0.05	23.60	0.01	1.933	73.59	0.00	0.0	0.0	0.0	—	2.96	0.89	0.78	—	13494	0	1	630	0	0	0	logfile
✔	5GAM	8011	2023-02-23	2015-12-15	3.7	4.03	—	3.9	0.008	1.49	11.0	0.10	19.79	0.01	1.976	11.76	6.60	10.0	88.2	1.8	-2.90	0.72	0.57	1.24	3.9	0.004	0.88	0.0	0.05	18.91	0.01	2.099	17.67	0.49	6.9	92.9	0.2	-1.12	1.70	0.80	0.79	1.10	19123	2002	13	166	19	0	0	logfile
✔	5GAP	8014	2023-02-27	2015-12-15	3.6	3.65	—	3.6	0.008	1.51	26.0	0.09	17.39	0.01	2.143	7.18	4.23	8.8	89.7	1.5	-1.15	0.48	0.48	1.61	3.6	0.003	0.75	0.0	0.04	17.58	0.00	2.074	14.43	0.49	5.0	94.9	0.1	0.53	2.22	0.66	0.78	1.17	31576	3503	12	143	82	0	0	logfile
✔	5GAQ	8015	2023-02-23	2016-01-05	3.1	3.36	—	3.2	0.006	1.01	0.0	0.08	11.97	0.00	2.289	1.94	0.80	7.3	92.7	0.0	-3.69	0.56	0.50	3.88	3.2	0.006	0.66	0.0	0.05	16.40	0.00	2.147	14.03	0.84	3.8	96.2	0.0	-1.76	1.64	0.78	0.84	3.64	20574	2592	9	0	0	0	0	logfile
✘	5GJV	9513	2023-02-24	2016-07-02	3.6	3.69	—	3.7	0.013	1.60	32.0	0.08	14.75	0.01	1.695	18.01	4.57	11.6	86.4	2.0	-5.08	0.54	0.79	2.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21904	2661	14	0	43	0	0	logfile
✘	5GJW	9515	2023-02-23	2016-07-02	3.9	4.02	—	4.0	0.011	1.50	20.0	0.08	11.50	0.01	1.844	12.82	1.50	12.8	85.5	1.7	-5.28	0.55	0.80	1.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21561	2676	14	0	29	0	0	logfile
✘	5GW4	9540	2023-02-24	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.49	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✘	5GW5	9541	2023-02-24	2016-09-08	4.6	4.75	—	4.7	0.002	0.58	0.0	0.04	7.37	0.00	2.136	6.87	0.01	4.5	95.4	0.1	-3.73	0.74	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✔	5H1B	9566	2023-02-18	2016-10-08	4.4	3.94	—	3.6	0.010	1.41	0.0	0.06	13.44	0.01	1.503	54.25	5.67	6.2	91.1	2.6	-1.51	0.59	0.70	—	3.6	0.003	0.71	0.0	0.04	13.65	0.00	1.991	15.71	0.00	4.5	94.6	0.9	0.68	2.98	0.65	0.82	—	7359	924	7	9	6	0	0	logfile
✔	5H1C	9567	2023-02-18	2016-10-08	4.5	4.34	—	3.8	0.009	1.30	0.0	0.05	14.98	0.00	1.454	41.46	4.44	4.9	92.8	2.3	-2.37	0.52	0.66	—	3.8	0.002	0.63	0.0	0.04	15.12	0.00	1.965	12.11	0.00	4.2	94.8	1.0	0.67	1.57	0.58	0.82	—	7602	933	8	18	6	0	0	logfile
✔	5H1Q	9570	2023-02-24	2016-10-11	3.3	3.90	—	4.0	0.008	1.04	0.0	0.06	11.65	0.00	1.998	16.22	0.31	12.6	86.8	0.6	-5.07	0.44	0.69	3.01	3.9	0.003	0.80	0.0	0.04	16.46	0.00	2.145	9.68	1.01	9.7	89.8	0.6	-0.31	0.82	0.55	0.79	1.85	23784	2888	8	0	0	0	0	logfile
✔	5H3o	6656	2023-02-22	2016-10-26	3.5	3.66	—	3.6	0.015	1.48	4.0	0.08	16.00	0.01	2.235	19.87	6.55	6.0	93.4	0.6	-3.19	0.78	0.86	1.93	3.6	0.003	0.73	0.0	0.04	17.32	0.00	1.733	13.35	0.43	3.0	97.0	0.0	0.89	0.82	0.73	0.81	1.00	16958	2040	8	0	7	0	0	logfile
✔	5Hi9	6580	2023-02-23	2016-01-11	4.4	4.53	—	4.4	0.009	1.46	20.0	0.09	13.13	0.01	2.033	23.50	0.93	7.7	91.4	0.8	-4.25	0.73	0.73	—	4.4	0.003	0.83	0.0	0.04	13.58	0.00	2.108	18.66	0.00	8.1	91.9	0.0	-1.85	2.49	0.76	0.78	—	19636	2408	4	0	0	0	0	logfile
✔	5i08	8069	2023-02-24	2016-02-03	4.04	4.14	3.96	4.1	0.014	1.74	3.0	0.09	8.79	0.01	2.174	3.14	0.00	7.0	92.1	0.8	0.56	0.70	0.71	—	4.1	0.004	0.82	0.0	0.04	12.40	0.01	2.154	10.44	0.08	10.5	88.9	0.6	-1.62	1.62	0.74	0.80	—	22683	2874	3	0	0	0	0	logfile
✔	5iRX	8117	2023-02-21	2016-03-14	2.95	3.39	2.91	3.3	0.014	1.44	0.0	0.07	15.36	0.01	1.744	9.65	0.00	10.7	89.2	0.1	-6.45	0.67	0.77	3.80	3.4	0.004	0.73	0.0	0.04	16.65	0.00	2.241	8.73	1.73	8.2	91.8	0.0	-0.58	0.68	0.62	0.82	1.93	13162	1726	12	0	20	0	0	logfile
✔	5iRZ	8118	2023-02-20	2016-03-15	3.28	3.63	3.24	3.5	0.010	1.31	0.0	0.23	16.19	0.00	2.008	9.02	0.00	7.5	92.5	0.0	-5.78	0.68	0.77	4.48	3.5	0.003	0.61	0.0	0.04	15.99	0.00	2.158	8.90	0.28	7.1	92.9	0.0	0.91	0.68	0.65	0.84	2.94	12504	1576	8	0	24	0	0	logfile
✘	5iS0	8119	2023-02-20	2016-03-15	3.43	3.36	3.37	3.2	0.015	1.24	0.0	0.06	10.52	0.01	1.283	5.42	0.00	10.1	89.7	0.3	-5.27	0.63	0.73	2.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11808	1576	8	0	4	0	0	logfile
✔	5JLF	8162	2023-02-21	2016-04-27	3.6	3.99	—	3.7	0.013	1.58	17.0	0.11	12.26	0.01	2.184	9.01	1.29	2.9	96.6	0.6	-0.70	0.67	0.69	2.49	3.7	0.005	0.78	0.0	0.04	15.12	0.00	1.912	15.75	0.91	4.2	95.5	0.3	-0.11	1.42	0.70	0.75	1.94	15800	1835	12	0	280	0	0	logfile
✔	5JLF	8163	2023-02-21	2016-04-27	3.6	3.82	—	3.7	0.013	1.58	17.0	0.11	12.26	0.01	2.184	9.01	1.29	2.9	96.6	0.6	-0.70	0.64	0.74	2.52	3.7	0.003	0.72	0.0	0.04	15.21	0.00	1.982	12.28	0.52	3.4	96.3	0.3	0.12	1.43	0.68	0.83	1.85	15800	1835	12	0	280	0	0	logfile
✔	5K0Z	8191	2023-02-19	2016-05-17	2.8	4.15	—	2.8	0.011	1.04	0.0	0.06	10.64	0.01	2.056	18.30	0.00	2.9	97.1	0.0	-4.11	0.73	0.58	1.27	3.1	0.005	1.15	0.0	0.06	17.03	0.01	2.099	33.56	4.91	4.5	95.5	0.0	-0.35	1.52	0.87	0.84	1.07	9749	1268	8	0	0	41	0	logfile

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