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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6NYG | 0543 | 2024-04-09 | 2019-02-11 | 3.9 | 4.55 | — | 3.9 | 0.005 | 0.97 | 0.0 | 0.06 | 10.45 | 0.00 | 2.242 | 9.18 | 0.16 | 14.1 | 85.9 | 0.0 | -4.66 | 0.82 | 0.64 | 0.83 | 3.9 | 0.004 | 0.79 | 0.0 | 0.05 | 13.60 | 0.00 | 2.125 | 25.60 | 2.77 | 17.7 | 82.3 | 0.0 | -4.27 | 0.73 | 0.83 | 0.69 | 1.13 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NYJ | 0544 | 2024-04-10 | 2019-02-11 | 3.2 | 3.93 | — | 3.8 | 0.008 | 1.06 | 0.0 | 0.06 | 10.60 | 0.01 | 2.247 | 7.25 | 0.54 | 15.2 | 84.8 | 0.0 | -5.28 | 0.82 | 0.77 | 3.30 | 3.8 | 0.004 | 0.68 | 0.0 | 0.05 | 12.78 | 0.00 | 2.219 | 12.48 | 1.92 | 14.5 | 85.5 | 0.0 | -3.95 | 0.58 | 0.84 | 0.80 | 2.93 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NYL | 0545 | 2024-04-10 | 2019-02-11 | 3.7 | 4.50 | — | 4.1 | 0.008 | 1.14 | 0.0 | 0.06 | 11.10 | 0.01 | 2.233 | 10.38 | 0.97 | 16.1 | 83.9 | 0.0 | -5.60 | 0.87 | 0.74 | 2.26 | 4.1 | 0.004 | 0.73 | 0.0 | 0.05 | 13.05 | 0.00 | 2.128 | 22.48 | 3.12 | 17.4 | 82.6 | 0.0 | -4.67 | 0.51 | 0.87 | 0.74 | 1.72 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NYM | 0546 | 2024-04-10 | 2019-02-11 | 3.6 | 4.42 | — | 4.1 | 0.005 | 0.94 | 0.0 | 0.06 | 10.43 | 0.00 | 2.260 | 8.20 | 0.32 | 12.6 | 87.4 | 0.0 | -5.10 | 0.87 | 0.78 | 2.54 | 4.1 | 0.005 | 0.75 | 0.0 | 0.05 | 12.87 | 0.00 | 2.160 | 16.77 | 2.24 | 18.3 | 81.7 | 0.0 | -4.35 | 1.19 | 0.87 | 0.79 | 2.43 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NYN | 0547 | 2024-04-09 | 2019-02-11 | 3.5 | 4.40 | — | 4.1 | 0.006 | 1.01 | 0.0 | 0.06 | 10.55 | 0.01 | 2.259 | 7.62 | 0.97 | 16.7 | 83.3 | 0.0 | -5.19 | 0.87 | 0.77 | 2.69 | 4.1 | 0.007 | 0.79 | 0.0 | 0.05 | 12.66 | 0.00 | 2.141 | 19.41 | 2.53 | 20.9 | 79.1 | 0.0 | -4.77 | 0.50 | 0.88 | 0.80 | 2.24 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NYY | 0552 | 2024-04-10 | 2019-02-12 | 3.0 | 2.29 | 2.98 | 3.1 | 0.007 | 0.90 | 0.0 | 0.05 | 10.82 | 0.01 | 0.952 | 5.97 | 0.05 | 5.9 | 94.1 | 0.0 | -5.40 | 0.70 | 0.66 | 3.17 | 3.1 | 0.004 | 0.68 | 0.0 | 0.04 | 15.85 | 0.00 | 1.897 | 9.47 | 2.80 | 4.8 | 95.2 | 0.0 | -0.55 | 1.34 | 0.77 | 0.74 | 2.52 | 19226 | 2894 | 16 | 0 | 13 | 0 | 0 | logfile |
✔ | 6NZK | 0557 | 2024-04-13 | 2019-02-13 | 2.8 | 2.92 | — | 2.9 | 0.025 | 1.83 | 0.0 | 0.12 | 16.03 | 0.01 | 2.033 | 0.97 | 0.39 | 1.6 | 98.3 | 0.1 | 0.52 | 0.79 | 0.85 | 4.94 | 2.9 | 0.003 | 0.63 | 0.0 | 0.05 | 13.72 | 0.00 | 2.126 | 7.16 | 1.89 | 2.8 | 97.2 | 0.0 | 0.26 | 1.18 | 0.78 | 0.86 | 4.36 | 29268 | 3525 | 39 | 0 | 105 | 396 | 0 | logfile |
✘ | 6NZo | 0559 | 2024-04-08 | 2019-02-14 | 3.8 | 4.12 | — | 4.0 | 0.007 | 0.93 | 0.0 | 0.06 | 27.02 | 0.01 | 2.313 | 3.45 | 0.12 | 4.8 | 95.1 | 0.1 | -1.08 | 0.78 | 0.76 | 1.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13738 | 985 | 11 | 290 | 3 | 0 | 0 | logfile |
✔ | 6NZU | 0560 | 2024-04-11 | 2019-02-14 | 3.2 | 3.33 | 3.22 | 3.3 | 0.014 | 0.88 | 0.0 | 0.06 | 14.46 | 0.01 | 2.057 | 2.18 | 0.00 | 7.3 | 92.7 | 0.0 | -5.92 | 0.71 | 0.84 | 3.98 | 3.3 | 0.002 | 0.60 | 0.0 | 0.04 | 15.86 | 0.00 | 2.208 | 6.82 | 0.95 | 4.5 | 95.5 | 0.0 | -1.15 | 0.55 | 0.70 | 0.84 | 3.07 | 12570 | 1588 | 16 | 0 | 6 | 0 | 0 | logfile |
✔ | 6NZW | 0562 | 2024-04-14 | 2019-02-14 | 3.21 | 3.76 | — | 3.7 | 0.008 | 0.90 | 0.0 | 0.04 | 13.90 | 0.00 | 2.145 | 3.31 | 3.09 | 3.6 | 96.4 | 0.0 | -3.71 | 0.62 | 0.75 | 2.72 | 3.7 | 0.003 | 0.56 | 0.0 | 0.04 | 15.87 | 0.00 | 2.052 | 8.67 | 3.15 | 3.9 | 96.1 | 0.0 | -0.46 | 0.76 | 0.60 | 0.76 | 1.83 | 31720 | 1878 | 12 | 0 | 19 | 0 | 15714 | logfile |
✔ | 6NZZ | 0563 | 2024-04-14 | 2019-02-14 | 3.32 | 3.85 | — | 3.8 | 0.007 | 0.94 | 0.0 | 0.04 | 14.23 | 0.00 | 2.210 | 4.31 | 3.17 | 5.3 | 94.7 | 0.0 | -4.79 | 0.58 | 0.71 | 2.20 | 3.8 | 0.003 | 0.56 | 0.0 | 0.04 | 15.62 | 0.00 | 1.991 | 8.24 | 2.58 | 4.2 | 95.8 | 0.0 | -0.77 | 1.78 | 0.48 | 0.65 | 0.91 | 30988 | 1836 | 12 | 0 | 19 | 0 | 15330 | logfile |
✔ | 6o00 | 0564 | 2024-04-14 | 2019-02-14 | 4.18 | 4.51 | — | 4.3 | 0.005 | 0.72 | 0.0 | 0.04 | 14.22 | 0.00 | 2.087 | 4.70 | 0.69 | 4.6 | 95.4 | 0.0 | -3.33 | 0.67 | 0.77 | — | 4.2 | 0.003 | 0.57 | 0.0 | 0.03 | 13.31 | 0.00 | 2.018 | 9.56 | 0.00 | 4.7 | 95.3 | 0.0 | 1.23 | 1.86 | 0.68 | 0.78 | — | 31470 | 1878 | 6 | 0 | 0 | 0 | 15714 | logfile |
✔ | 6o0H | 0567 | 2024-04-14 | 2019-02-16 | 3.67 | 3.72 | 3.76 | 3.7 | 0.009 | 1.16 | 0.0 | 0.06 | 10.83 | 0.01 | 2.262 | 7.17 | 0.35 | 4.8 | 95.2 | 0.0 | -4.11 | 0.79 | 0.78 | 2.27 | 3.7 | 0.003 | 0.66 | 0.0 | 0.04 | 14.73 | 0.00 | 2.189 | 10.79 | 2.12 | 3.2 | 96.8 | 0.0 | -0.39 | 0.82 | 0.79 | 0.78 | 1.47 | 32012 | 4092 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 6o0X | 0583 | 2024-04-07 | 2019-02-17 | 3.28 | 3.97 | — | 3.6 | 0.005 | 0.74 | 0.0 | 0.04 | 19.36 | 0.01 | 2.317 | 2.61 | 0.14 | 6.2 | 93.8 | 0.0 | -4.06 | 0.85 | 0.88 | 2.75 | 3.6 | 0.003 | 0.51 | 0.0 | 0.03 | 19.81 | 0.00 | 2.197 | 5.41 | 3.00 | 4.2 | 95.8 | 0.0 | -0.02 | 0.30 | 0.84 | 0.87 | 2.51 | 11257 | 1112 | 5 | 150 | 0 | 0 | 0 | logfile |
✔ | 6o0Y | 0584 | 2024-04-07 | 2019-02-17 | 3.37 | 4.01 | — | 3.7 | 0.005 | 0.74 | 0.0 | 0.05 | 19.22 | 0.01 | 2.272 | 2.52 | 0.37 | 5.5 | 94.5 | 0.0 | -4.11 | 0.85 | 0.88 | 2.93 | 3.7 | 0.006 | 0.64 | 0.0 | 0.04 | 19.42 | 0.00 | 2.043 | 6.70 | 2.73 | 5.7 | 94.3 | 0.0 | -0.50 | 0.31 | 0.85 | 0.89 | 2.58 | 11828 | 1146 | 5 | 150 | 0 | 0 | 0 | logfile |
✔ | 6o0Z | 0585 | 2024-04-07 | 2019-02-17 | 3.3 | 3.94 | — | 3.6 | 0.006 | 0.72 | 0.0 | 0.04 | 18.94 | 0.00 | 2.302 | 2.58 | 0.27 | 6.3 | 93.7 | 0.0 | -4.11 | 0.86 | 0.88 | 3.46 | 3.6 | 0.002 | 0.51 | 0.0 | 0.03 | 19.11 | 0.00 | 2.160 | 4.82 | 2.05 | 5.4 | 94.6 | 0.0 | 0.20 | 0.30 | 0.85 | 0.88 | 3.18 | 11912 | 1288 | 4 | 135 | 0 | 0 | 0 | logfile |
✘ | 6o1D | 0586 | 2024-04-08 | 2019-02-19 | 3.395 | 3.57 | — | 3.5 | 0.010 | 0.95 | 1.0 | 0.05 | 28.02 | 0.01 | 2.317 | 2.17 | 0.00 | 3.4 | 96.6 | 0.0 | -4.72 | 0.79 | 0.87 | 4.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11982 | 761 | 10 | 290 | 0 | 0 | 0 | logfile |
✔ | 6o1K | 0590 | 2024-04-11 | 2019-02-20 | 3.13 | 3.31 | 3.19 | 3.3 | 0.006 | 1.06 | 0.0 | 0.06 | 12.09 | 0.01 | 2.308 | 4.54 | 0.17 | 5.4 | 94.4 | 0.2 | -3.06 | 0.68 | 0.78 | 3.51 | 3.3 | 0.006 | 0.67 | 0.0 | 0.05 | 15.66 | 0.01 | 1.957 | 9.88 | 2.67 | 5.5 | 94.3 | 0.2 | -0.42 | 0.90 | 0.72 | 0.83 | 3.13 | 22707 | 1317 | 16 | 36 | 0 | 0 | 11277 | logfile |
✔ | 6o1L | 0591 | 2024-04-12 | 2019-02-20 | 3.37 | 2.49 | 3.42 | 3.3 | 0.010 | 1.19 | 0.0 | 0.07 | 12.86 | 0.01 | 2.243 | 6.00 | 1.20 | 7.0 | 92.8 | 0.1 | -3.76 | 0.79 | 0.78 | 3.04 | 3.3 | 0.003 | 0.62 | 0.0 | 0.04 | 15.46 | 0.00 | 1.995 | 8.08 | 1.90 | 5.2 | 94.8 | 0.0 | -1.05 | 0.81 | 0.82 | 0.81 | 2.50 | 26877 | 1579 | 17 | 36 | 0 | 0 | 13324 | logfile |
✔ | 6o1M | 0592 | 2024-04-14 | 2019-02-20 | 3.15 | 2.52 | 3.29 | 3.2 | 0.006 | 0.99 | 1.0 | 0.06 | 12.66 | 0.01 | 2.315 | 5.71 | 0.55 | 6.5 | 93.5 | 0.0 | -3.39 | 0.80 | 0.78 | 2.87 | 3.2 | 0.003 | 0.61 | 0.0 | 0.04 | 15.55 | 0.00 | 2.111 | 8.35 | 1.71 | 5.3 | 94.7 | 0.0 | -0.84 | 0.88 | 0.82 | 0.81 | 2.18 | 31047 | 1841 | 18 | 36 | 0 | 0 | 15371 | logfile |