Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6H5i	0140	2023-04-20	2018-07-24	3.9	3.87	—	23.0	0.006	0.81	0.0	0.05	10.47	0.01	2.196	2.64	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.7	0.003	0.67	0.0	0.04	15.36	0.00	2.097	14.22	0.32	4.1	95.9	0.0	1.46	1.26	0.37	0.24	0.27	43900	5392	26	0	0	0	0	logfile
✔	6H6E	0149	2023-04-21	2018-07-27	3.95	3.43	—	3.8	0.021	1.74	1.0	0.10	10.97	0.01	1.834	1.64	0.01	1.9	97.9	0.3	0.48	0.79	0.80	1.58	3.7	0.004	0.75	0.0	0.04	16.20	0.00	2.005	16.29	0.50	3.2	96.7	0.1	0.97	1.89	0.79	0.82	1.48	112922	14231	6	0	0	0	0	logfile
✔	6H6F	0150	2023-04-22	2018-07-27	3.72	2.83	—	3.6	0.020	1.68	1.0	0.09	10.88	0.01	2.182	1.08	0.00	1.7	98.1	0.2	0.96	0.83	0.77	1.63	3.5	0.003	0.64	0.0	0.04	15.30	0.00	2.091	11.57	0.19	2.5	97.5	0.0	1.42	0.90	0.84	0.77	1.43	114303	14388	6	0	0	0	0	logfile
✔	6HBU	0190	2023-04-21	2018-08-13	3.09	3.04	—	3.1	0.009	1.18	0.0	0.06	11.06	0.01	1.965	4.88	0.00	4.9	94.6	0.5	-5.40	0.75	0.86	5.08	3.0	0.006	0.74	0.0	0.05	14.89	0.00	2.099	7.38	0.20	5.0	94.8	0.2	-0.07	0.54	0.77	0.89	3.91	9146	1168	4	0	4	0	0	logfile
✔	6HCo	0196	2023-04-22	2018-08-15	3.58	4.08	—	3.7	0.009	1.05	0.0	0.06	10.25	0.01	2.082	7.85	0.45	7.9	92.1	0.0	-4.59	0.65	0.75	1.63	3.7	0.003	0.75	0.0	0.04	12.94	0.00	2.154	14.73	0.45	6.1	93.9	0.0	-0.38	1.46	0.67	0.82	2.03	12338	1576	9	0	5	0	0	logfile
✔	6HCY	0199	2023-04-21	2018-08-17	3.1	3.48	3.04	3.4	0.015	1.26	0.0	0.06	13.94	0.01	2.017	2.66	0.79	6.2	93.8	0.0	-6.30	0.67	0.89	5.10	3.4	0.003	0.66	0.0	0.04	14.75	0.00	2.142	6.41	0.26	4.5	95.5	0.0	0.32	1.75	0.71	0.91	3.40	11007	1308	6	0	15	0	0	logfile
✔	6HD1	0200	2023-04-22	2018-08-17	3.8	3.97	3.67	3.8	0.015	1.21	0.0	0.06	13.65	0.01	1.971	3.39	0.79	6.2	93.8	0.0	-5.57	0.74	0.85	3.28	3.8	0.003	0.71	0.0	0.04	15.22	0.00	2.174	9.34	0.26	4.4	95.6	0.0	0.19	0.79	0.75	0.85	2.32	11007	1308	6	0	15	0	0	logfile
✔	6HD5	0201	2023-04-21	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.004	0.81	0.0	0.04	11.92	0.01	2.072	21.86	0.00	6.4	93.5	0.1	-0.40	2.04	0.46	0.56	—	9707	1234	3	0	0	0	0	logfile
✔	6HDD	0204	2023-04-28	2018-08-17	4.5	5.28	—	4.4	0.009	1.36	3.0	0.08	12.60	0.01	2.220	12.08	1.07	18.3	81.6	0.1	-6.11	0.74	0.42	—	8.5	0.005	1.07	0.0	0.05	13.67	0.01	1.438	29.15	0.00	16.5	83.1	0.4	-3.27	5.54	0.87	0.54	—	28154	3605	7	0	0	0	0	logfile
✔	6HE4	0209	2023-04-22	2018-08-20	4.85	4.88	—	4.8	0.036	3.65	111.0	0.21	18.70	0.03	1.953	1.83	3.66	6.4	89.5	4.1	-2.84	0.55	0.56	—	4.8	0.005	1.03	0.0	0.05	14.57	0.01	1.807	30.94	0.00	8.2	91.1	0.7	-1.51	2.38	0.59	0.77	—	12684	1602	11	0	10	0	0	logfile
✔	6HE5	0210	2023-04-27	2018-08-20	4.12	4.16	—	4.2	0.036	3.51	183.0	0.20	17.65	0.03	2.236	2.09	4.51	5.3	92.5	2.2	-2.68	0.54	0.60	—	4.1	0.005	0.88	0.0	0.05	14.49	0.00	2.074	22.24	0.00	4.4	95.4	0.2	-0.85	1.76	0.58	0.76	—	24633	3162	20	0	0	0	0	logfile
✘	6HiN	0225	2023-04-23	2018-08-30	4.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14220	1675	20	0	30	0	0	logfile
✘	6Hio	0226	2023-04-23	2018-08-30	4.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16085	1925	20	0	30	0	0	logfile
✘	6HiQ	0227	2023-04-23	2018-08-30	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16110	1925	20	0	30	0	0	logfile
✔	6HiS	0228	2023-04-23	2018-08-30	4.5	4.60	—	4.5	0.011	1.57	0.0	0.08	11.99	0.01	2.228	16.80	0.29	4.9	95.1	0.0	-2.60	0.76	0.77	—	4.5	0.003	0.78	0.0	0.05	13.29	0.00	1.962	14.29	0.00	7.8	92.2	0.0	-1.75	0.92	0.76	0.77	—	16240	1935	25	0	40	0	0	logfile
✔	6HiZ	0233	2023-04-28	2018-08-31	3.08	3.20	3.05	3.1	0.009	1.39	0.0	0.06	18.08	0.01	1.866	11.16	12.80	3.2	96.7	0.1	-2.90	0.89	0.91	2.63	3.1	0.002	0.58	0.0	0.04	16.93	0.00	1.989	8.25	0.16	3.3	96.7	0.0	1.26	0.78	0.87	0.89	2.62	76845	9056	33	143	19	3	0	logfile
✔	6HJN	0234	2023-04-22	2018-09-04	3.3	3.88	3.28	3.6	0.008	1.23	3.0	0.11	12.09	0.02	1.734	5.04	2.80	8.9	91.1	0.0	-3.22	0.91	0.91	4.09	3.6	0.003	0.68	0.0	0.04	14.00	0.00	2.096	6.24	0.16	8.3	91.7	0.0	-0.32	0.55	0.89	0.89	3.27	12309	1488	24	0	48	0	0	logfile
✔	6HJP	0235	2023-04-26	2018-09-04	3.3	3.74	3.29	3.5	0.008	1.17	9.0	0.09	11.65	0.02	2.158	3.91	2.40	7.9	91.9	0.2	-2.34	0.88	0.90	3.43	3.5	0.003	0.64	0.0	0.04	13.89	0.00	2.067	6.05	0.34	4.8	95.2	0.0	0.10	0.63	0.87	0.89	2.88	22134	2784	30	0	51	0	0	logfile
✔	6HJQ	0236	2023-04-26	2018-09-04	4.1	4.38	4.03	4.1	0.006	0.94	0.0	0.06	10.07	0.01	1.406	4.81	0.13	5.6	94.3	0.1	-3.06	0.83	0.87	—	4.1	0.003	0.68	0.0	0.04	11.52	0.00	2.000	9.92	0.00	5.4	94.6	0.0	-0.55	1.66	0.83	0.87	—	22530	2871	27	0	42	0	0	logfile
✔	6HJR	0237	2023-04-22	2018-09-04	4.2	4.57	4.24	4.3	0.009	1.13	0.0	0.07	11.24	0.01	2.200	6.58	0.70	10.6	89.2	0.2	-3.38	0.84	0.88	—	4.3	0.002	0.65	0.0	0.04	12.00	0.00	2.090	9.54	0.00	7.3	92.5	0.1	-0.81	0.60	0.83	0.87	—	12579	1578	19	0	31	0	0	logfile

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