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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6N57 | 0348 | 2023-02-27 | 2018-11-21 | 3.7 | 3.83 | — | 3.8 | 0.012 | 1.14 | 3.0 | 0.06 | 10.41 | 0.01 | 1.366 | 39.05 | 0.37 | 15.4 | 84.0 | 0.6 | -4.55 | 0.75 | 0.82 | 2.12 | 3.8 | 0.003 | 0.70 | 0.0 | 0.04 | 15.39 | 0.00 | 2.130 | 11.80 | 0.28 | 7.4 | 92.4 | 0.2 | -1.11 | 2.04 | 0.73 | 0.81 | 1.42 | 30233 | 3841 | 11 | 0 | 8 | 0 | 0 | logfile |
✔ | 6N58 | 0349 | 2023-02-27 | 2018-11-21 | 3.78 | 3.90 | — | 3.9 | 0.013 | 1.21 | 0.0 | 0.06 | 10.64 | 0.01 | 1.892 | 38.60 | 0.37 | 14.7 | 84.9 | 0.4 | -4.74 | 0.73 | 0.82 | 2.09 | 3.9 | 0.004 | 0.75 | 0.0 | 0.04 | 15.49 | 0.00 | 2.039 | 13.06 | 0.64 | 8.4 | 91.5 | 0.1 | -1.43 | 3.02 | 0.72 | 0.81 | 1.36 | 30189 | 3833 | 11 | 0 | 8 | 0 | 0 | logfile |
✔ | 6N7H | 0356 | 2023-02-22 | 2018-11-27 | 3.6 | 3.75 | — | 3.7 | 0.009 | 1.31 | 0.0 | 0.07 | 12.99 | 0.01 | 2.008 | 8.78 | 1.35 | 12.3 | 87.1 | 0.6 | -4.46 | 0.64 | 0.76 | 2.32 | 3.7 | 0.004 | 0.79 | 0.0 | 0.05 | 16.26 | 0.00 | 2.045 | 11.54 | 0.45 | 9.9 | 90.0 | 0.1 | -0.44 | 1.44 | 0.66 | 0.78 | 1.75 | 17242 | 2153 | 8 | 0 | 23 | 0 | 0 | logfile |
✔ | 6N7i | 0357 | 2023-02-19 | 2018-11-27 | 3.2 | 3.34 | — | 3.3 | 0.005 | 0.91 | 0.0 | 0.06 | 14.82 | 0.02 | 2.157 | 2.64 | 0.53 | 3.9 | 96.1 | 0.0 | -3.45 | 0.69 | 0.75 | 2.35 | 3.3 | 0.003 | 0.66 | 0.0 | 0.04 | 17.64 | 0.00 | 1.961 | 8.93 | 0.62 | 4.1 | 95.9 | 0.0 | -0.76 | 1.31 | 0.73 | 0.81 | 2.15 | 10833 | 1350 | 12 | 15 | 8 | 1 | 0 | logfile |
✔ | 6N7N | 0359 | 2023-02-20 | 2018-11-27 | 3.5 | 3.55 | — | 3.5 | 0.006 | 0.99 | 0.0 | 0.06 | 14.77 | 0.00 | 1.975 | 4.24 | 0.74 | 5.5 | 94.5 | 0.0 | -3.49 | 0.67 | 0.66 | 1.98 | 3.5 | 0.002 | 0.60 | 0.0 | 0.04 | 16.36 | 0.00 | 1.919 | 10.78 | 0.22 | 4.0 | 96.0 | 0.0 | -0.96 | 1.69 | 0.69 | 0.69 | 1.43 | 12854 | 1608 | 12 | 15 | 10 | 0 | 0 | logfile |
✔ | 6N7S | 0362 | 2023-02-20 | 2018-11-28 | 4.6 | 4.47 | — | 4.4 | 0.008 | 1.20 | 0.0 | 0.07 | 14.87 | 0.01 | 1.812 | 8.33 | 1.04 | 12.5 | 87.5 | 0.0 | -5.07 | 0.69 | 0.54 | — | 4.3 | 0.003 | 0.71 | 0.0 | 0.04 | 14.71 | 0.00 | 1.879 | 15.87 | 0.00 | 5.3 | 94.7 | 0.0 | -2.15 | 1.90 | 0.71 | 0.59 | — | 12783 | 1607 | 11 | 13 | 8 | 0 | 0 | logfile |
✔ | 6N7T | 0363 | 2023-02-20 | 2018-11-28 | 3.9 | 4.01 | — | 3.9 | 0.006 | 0.95 | 0.0 | 0.06 | 15.07 | 0.00 | 1.883 | 3.57 | 0.81 | 5.6 | 94.3 | 0.1 | -3.82 | 0.76 | 0.72 | 1.04 | 3.9 | 0.003 | 0.65 | 0.0 | 0.04 | 17.02 | 0.00 | 1.867 | 10.61 | 0.22 | 4.4 | 95.6 | 0.0 | -1.01 | 1.35 | 0.78 | 0.75 | 0.96 | 12890 | 1610 | 12 | 16 | 10 | 0 | 0 | logfile |
✔ | 6N7V | 0364 | 2023-02-20 | 2018-11-28 | 3.8 | 4.02 | — | 3.8 | 0.005 | 0.89 | 0.0 | 0.05 | 14.42 | 0.00 | 2.119 | 3.58 | 0.15 | 3.8 | 96.2 | 0.0 | -3.41 | 0.76 | 0.74 | 1.21 | 3.8 | 0.003 | 0.68 | 0.0 | 0.04 | 16.51 | 0.00 | 1.834 | 12.45 | 0.30 | 4.2 | 95.8 | 0.0 | -0.67 | 0.95 | 0.78 | 0.77 | 1.06 | 12861 | 1606 | 12 | 16 | 10 | 0 | 0 | logfile |
✔ | 6N7W | 0365 | 2023-02-18 | 2018-11-28 | 4.5 | 4.41 | — | 4.1 | 0.006 | 0.75 | 0.0 | 0.05 | 19.17 | 0.02 | 2.125 | 3.09 | 0.46 | 4.4 | 95.5 | 0.1 | -2.55 | 0.85 | 0.81 | — | 4.1 | 0.003 | 0.58 | 0.0 | 0.04 | 19.35 | 0.00 | 1.997 | 10.62 | 0.00 | 3.7 | 96.3 | 0.0 | 1.34 | 1.91 | 0.86 | 0.83 | — | 7837 | 808 | 5 | 70 | 2 | 0 | 0 | logfile |
✔ | 6N9U | 0379 | 2023-02-18 | 2018-12-04 | 3.7 | 3.80 | — | 3.7 | 0.007 | 0.84 | 0.0 | 0.06 | 12.72 | 0.01 | 2.205 | 3.66 | 0.34 | 5.3 | 94.7 | 0.0 | -4.67 | 0.75 | 0.82 | 3.31 | 3.7 | 0.003 | 0.61 | 0.0 | 0.04 | 16.50 | 0.00 | 1.944 | 7.26 | 0.11 | 4.1 | 95.9 | 0.0 | -1.57 | 1.14 | 0.77 | 0.83 | 1.77 | 8822 | 1063 | 7 | 18 | 4 | 0 | 0 | logfile |
✔ | 6N9V | 0380 | 2023-02-23 | 2018-12-04 | 4.0 | 4.06 | — | 4.0 | 0.005 | 0.82 | 0.0 | 0.05 | 13.72 | 0.01 | 2.125 | 2.60 | 0.41 | 3.8 | 96.2 | 0.0 | -4.08 | 0.76 | 0.82 | — | 4.0 | 0.003 | 0.65 | 0.0 | 0.04 | 16.77 | 0.00 | 1.938 | 9.10 | 0.36 | 3.6 | 96.4 | 0.0 | -1.05 | 1.94 | 0.78 | 0.85 | — | 21526 | 2651 | 15 | 33 | 14 | 0 | 0 | logfile |
✔ | 6N9W | 0381 | 2023-02-23 | 2018-12-04 | 4.0 | 4.51 | — | 4.2 | 0.005 | 0.76 | 0.0 | 0.05 | 13.64 | 0.00 | 2.082 | 3.05 | 0.10 | 3.4 | 96.6 | 0.0 | -3.98 | 0.78 | 0.79 | — | 4.2 | 0.003 | 0.73 | 0.0 | 0.04 | 16.29 | 0.00 | 1.886 | 12.74 | 0.30 | 3.3 | 96.7 | 0.0 | -0.73 | 1.29 | 0.80 | 0.81 | — | 19576 | 2410 | 15 | 30 | 12 | 0 | 0 | logfile |
✔ | 6N9X | 0382 | 2023-02-23 | 2018-12-04 | 4.1 | 4.18 | — | 4.1 | 0.006 | 0.84 | 0.0 | 0.05 | 13.69 | 0.02 | 2.131 | 3.65 | 0.60 | 3.9 | 96.1 | 0.0 | -4.04 | 0.74 | 0.78 | — | 4.1 | 0.003 | 0.65 | 0.0 | 0.04 | 14.75 | 0.00 | 1.857 | 8.78 | 0.05 | 4.6 | 95.4 | 0.0 | -0.90 | 1.31 | 0.78 | 0.81 | — | 19658 | 2419 | 14 | 31 | 12 | 0 | 0 | logfile |
✔ | 6N9Y | 0383 | 2023-02-17 | 2018-12-04 | 4.0 | 3.80 | — | 3.7 | 0.008 | 1.10 | 0.0 | 0.05 | 10.30 | 0.01 | 2.229 | 4.80 | 0.42 | 9.1 | 90.9 | 0.0 | -4.98 | 0.38 | 0.73 | — | 3.7 | 0.003 | 0.68 | 0.0 | 0.04 | 15.57 | 0.00 | 2.156 | 13.06 | 0.00 | 7.8 | 92.2 | 0.0 | -0.84 | 1.77 | 0.40 | 0.79 | — | 4527 | 552 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NAV | 0397 | 2023-02-22 | 2018-12-06 | 4.1 | 4.14 | — | 4.1 | 0.005 | 0.82 | 0.0 | 0.06 | 8.77 | 0.00 | 2.245 | 4.10 | 0.00 | 4.7 | 95.3 | 0.0 | -2.96 | 0.62 | 0.82 | — | 4.1 | 0.004 | 0.63 | 0.0 | 0.04 | 11.69 | 0.00 | 2.121 | 8.30 | 0.00 | 6.8 | 93.2 | 0.0 | -0.83 | 1.53 | 0.63 | 0.84 | — | 18711 | 2751 | 21 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NB3 | 0401 | 2023-02-27 | 2018-12-06 | 3.5 | 3.78 | — | 3.7 | 0.014 | 1.35 | 3.0 | 0.08 | 10.77 | 0.01 | 2.139 | 1.17 | 0.41 | 2.7 | 97.1 | 0.2 | 0.07 | 0.77 | 0.74 | 2.09 | 3.7 | 0.005 | 0.71 | 0.0 | 0.04 | 13.92 | 0.00 | 2.045 | 8.98 | 0.38 | 4.7 | 95.3 | 0.0 | -0.17 | 1.61 | 0.80 | 0.80 | 1.99 | 30960 | 3757 | 54 | 0 | 160 | 0 | 0 | logfile |
✔ | 6NB4 | 0402 | 2023-02-25 | 2018-12-06 | 3.6 | 3.72 | — | 3.7 | 0.015 | 1.31 | 4.0 | 0.08 | 10.74 | 0.01 | 1.986 | 1.24 | 0.45 | 2.6 | 97.1 | 0.2 | 0.04 | 0.77 | 0.74 | 2.29 | 3.6 | 0.004 | 0.67 | 0.0 | 0.04 | 14.11 | 0.00 | 2.104 | 7.19 | 0.37 | 4.1 | 95.9 | 0.0 | -0.16 | 1.59 | 0.81 | 0.80 | 1.99 | 26681 | 3315 | 46 | 0 | 113 | 0 | 0 | logfile |
✔ | 6NB6 | 0403 | 2023-02-25 | 2018-12-06 | 4.2 | 4.51 | — | 4.3 | 0.016 | 1.44 | 4.0 | 0.10 | 9.81 | 0.01 | 2.264 | 1.21 | 0.42 | 3.3 | 96.4 | 0.2 | 0.22 | 0.81 | 0.76 | — | 4.3 | 0.005 | 0.70 | 0.0 | 0.05 | 11.05 | 0.00 | 2.112 | 6.52 | 0.00 | 5.3 | 94.7 | 0.0 | 0.40 | 0.69 | 0.83 | 0.81 | — | 25783 | 3599 | 48 | 0 | 149 | 0 | 0 | logfile |
✔ | 6NB7 | 0404 | 2023-02-25 | 2018-12-06 | 4.5 | 4.89 | — | 4.6 | 0.015 | 1.44 | 1.0 | 0.09 | 9.14 | 0.01 | 2.330 | 0.87 | 0.97 | 3.2 | 96.6 | 0.2 | 0.24 | 0.80 | 0.71 | — | 4.6 | 0.003 | 0.70 | 0.0 | 0.05 | 10.25 | 0.00 | 2.143 | 7.01 | 0.00 | 4.1 | 95.8 | 0.0 | -0.39 | 0.88 | 0.83 | 0.78 | — | 24718 | 3828 | 49 | 0 | 137 | 0 | 0 | logfile |
✔ | 6NBF | 0410 | 2023-02-19 | 2018-12-07 | 3.0 | 3.52 | — | 3.5 | 0.005 | 0.90 | 0.0 | 0.06 | 8.85 | 0.01 | 2.307 | 3.07 | 0.10 | 3.0 | 97.0 | 0.0 | -1.40 | 0.64 | 0.79 | 3.11 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 13.98 | 0.00 | 2.136 | 6.62 | 1.83 | 1.9 | 98.1 | 0.0 | 0.75 | 1.19 | 0.54 | 0.75 | 2.26 | 9424 | 1148 | 7 | 0 | 10 | 0 | 0 | logfile |