Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6N57	0348	2023-02-27	2018-11-21	3.7	3.83	—	3.8	0.012	1.14	3.0	0.06	10.41	0.01	1.366	39.05	0.37	15.4	84.0	0.6	-4.55	0.75	0.82	2.12	3.8	0.003	0.70	0.0	0.04	15.39	0.00	2.130	11.80	0.28	7.4	92.4	0.2	-1.11	2.04	0.73	0.81	1.42	30233	3841	11	0	8	0	0	logfile
✔	6N58	0349	2023-02-27	2018-11-21	3.78	3.90	—	3.9	0.013	1.21	0.0	0.06	10.64	0.01	1.892	38.60	0.37	14.7	84.9	0.4	-4.74	0.73	0.82	2.09	3.9	0.004	0.75	0.0	0.04	15.49	0.00	2.039	13.06	0.64	8.4	91.5	0.1	-1.43	3.02	0.72	0.81	1.36	30189	3833	11	0	8	0	0	logfile
✔	6N7H	0356	2023-02-22	2018-11-27	3.6	3.75	—	3.7	0.009	1.31	0.0	0.07	12.99	0.01	2.008	8.78	1.35	12.3	87.1	0.6	-4.46	0.64	0.76	2.32	3.7	0.004	0.79	0.0	0.05	16.26	0.00	2.045	11.54	0.45	9.9	90.0	0.1	-0.44	1.44	0.66	0.78	1.75	17242	2153	8	0	23	0	0	logfile
✔	6N7i	0357	2023-02-19	2018-11-27	3.2	3.34	—	3.3	0.005	0.91	0.0	0.06	14.82	0.02	2.157	2.64	0.53	3.9	96.1	0.0	-3.45	0.69	0.75	2.35	3.3	0.003	0.66	0.0	0.04	17.64	0.00	1.961	8.93	0.62	4.1	95.9	0.0	-0.76	1.31	0.73	0.81	2.15	10833	1350	12	15	8	1	0	logfile
✔	6N7N	0359	2023-02-20	2018-11-27	3.5	3.55	—	3.5	0.006	0.99	0.0	0.06	14.77	0.00	1.975	4.24	0.74	5.5	94.5	0.0	-3.49	0.67	0.66	1.98	3.5	0.002	0.60	0.0	0.04	16.36	0.00	1.919	10.78	0.22	4.0	96.0	0.0	-0.96	1.69	0.69	0.69	1.43	12854	1608	12	15	10	0	0	logfile
✔	6N7S	0362	2023-02-20	2018-11-28	4.6	4.47	—	4.4	0.008	1.20	0.0	0.07	14.87	0.01	1.812	8.33	1.04	12.5	87.5	0.0	-5.07	0.69	0.54	—	4.3	0.003	0.71	0.0	0.04	14.71	0.00	1.879	15.87	0.00	5.3	94.7	0.0	-2.15	1.90	0.71	0.59	—	12783	1607	11	13	8	0	0	logfile
✔	6N7T	0363	2023-02-20	2018-11-28	3.9	4.01	—	3.9	0.006	0.95	0.0	0.06	15.07	0.00	1.883	3.57	0.81	5.6	94.3	0.1	-3.82	0.76	0.72	1.04	3.9	0.003	0.65	0.0	0.04	17.02	0.00	1.867	10.61	0.22	4.4	95.6	0.0	-1.01	1.35	0.78	0.75	0.96	12890	1610	12	16	10	0	0	logfile
✔	6N7V	0364	2023-02-20	2018-11-28	3.8	4.02	—	3.8	0.005	0.89	0.0	0.05	14.42	0.00	2.119	3.58	0.15	3.8	96.2	0.0	-3.41	0.76	0.74	1.21	3.8	0.003	0.68	0.0	0.04	16.51	0.00	1.834	12.45	0.30	4.2	95.8	0.0	-0.67	0.95	0.78	0.77	1.06	12861	1606	12	16	10	0	0	logfile
✔	6N7W	0365	2023-02-18	2018-11-28	4.5	4.41	—	4.1	0.006	0.75	0.0	0.05	19.17	0.02	2.125	3.09	0.46	4.4	95.5	0.1	-2.55	0.85	0.81	—	4.1	0.003	0.58	0.0	0.04	19.35	0.00	1.997	10.62	0.00	3.7	96.3	0.0	1.34	1.91	0.86	0.83	—	7837	808	5	70	2	0	0	logfile
✔	6N9U	0379	2023-02-18	2018-12-04	3.7	3.80	—	3.7	0.007	0.84	0.0	0.06	12.72	0.01	2.205	3.66	0.34	5.3	94.7	0.0	-4.67	0.75	0.82	3.31	3.7	0.003	0.61	0.0	0.04	16.50	0.00	1.944	7.26	0.11	4.1	95.9	0.0	-1.57	1.14	0.77	0.83	1.77	8822	1063	7	18	4	0	0	logfile
✔	6N9V	0380	2023-02-23	2018-12-04	4.0	4.06	—	4.0	0.005	0.82	0.0	0.05	13.72	0.01	2.125	2.60	0.41	3.8	96.2	0.0	-4.08	0.76	0.82	—	4.0	0.003	0.65	0.0	0.04	16.77	0.00	1.938	9.10	0.36	3.6	96.4	0.0	-1.05	1.94	0.78	0.85	—	21526	2651	15	33	14	0	0	logfile
✔	6N9W	0381	2023-02-23	2018-12-04	4.0	4.51	—	4.2	0.005	0.76	0.0	0.05	13.64	0.00	2.082	3.05	0.10	3.4	96.6	0.0	-3.98	0.78	0.79	—	4.2	0.003	0.73	0.0	0.04	16.29	0.00	1.886	12.74	0.30	3.3	96.7	0.0	-0.73	1.29	0.80	0.81	—	19576	2410	15	30	12	0	0	logfile
✔	6N9X	0382	2023-02-23	2018-12-04	4.1	4.18	—	4.1	0.006	0.84	0.0	0.05	13.69	0.02	2.131	3.65	0.60	3.9	96.1	0.0	-4.04	0.74	0.78	—	4.1	0.003	0.65	0.0	0.04	14.75	0.00	1.857	8.78	0.05	4.6	95.4	0.0	-0.90	1.31	0.78	0.81	—	19658	2419	14	31	12	0	0	logfile
✔	6N9Y	0383	2023-02-17	2018-12-04	4.0	3.80	—	3.7	0.008	1.10	0.0	0.05	10.30	0.01	2.229	4.80	0.42	9.1	90.9	0.0	-4.98	0.38	0.73	—	3.7	0.003	0.68	0.0	0.04	15.57	0.00	2.156	13.06	0.00	7.8	92.2	0.0	-0.84	1.77	0.40	0.79	—	4527	552	1	0	0	0	0	logfile
✔	6NAV	0397	2023-02-22	2018-12-06	4.1	4.14	—	4.1	0.005	0.82	0.0	0.06	8.77	0.00	2.245	4.10	0.00	4.7	95.3	0.0	-2.96	0.62	0.82	—	4.1	0.004	0.63	0.0	0.04	11.69	0.00	2.121	8.30	0.00	6.8	93.2	0.0	-0.83	1.53	0.63	0.84	—	18711	2751	21	0	0	0	0	logfile
✔	6NB3	0401	2023-02-27	2018-12-06	3.5	3.78	—	3.7	0.014	1.35	3.0	0.08	10.77	0.01	2.139	1.17	0.41	2.7	97.1	0.2	0.07	0.77	0.74	2.09	3.7	0.005	0.71	0.0	0.04	13.92	0.00	2.045	8.98	0.38	4.7	95.3	0.0	-0.17	1.61	0.80	0.80	1.99	30960	3757	54	0	160	0	0	logfile
✔	6NB4	0402	2023-02-25	2018-12-06	3.6	3.72	—	3.7	0.015	1.31	4.0	0.08	10.74	0.01	1.986	1.24	0.45	2.6	97.1	0.2	0.04	0.77	0.74	2.29	3.6	0.004	0.67	0.0	0.04	14.11	0.00	2.104	7.19	0.37	4.1	95.9	0.0	-0.16	1.59	0.81	0.80	1.99	26681	3315	46	0	113	0	0	logfile
✔	6NB6	0403	2023-02-25	2018-12-06	4.2	4.51	—	4.3	0.016	1.44	4.0	0.10	9.81	0.01	2.264	1.21	0.42	3.3	96.4	0.2	0.22	0.81	0.76	—	4.3	0.005	0.70	0.0	0.05	11.05	0.00	2.112	6.52	0.00	5.3	94.7	0.0	0.40	0.69	0.83	0.81	—	25783	3599	48	0	149	0	0	logfile
✔	6NB7	0404	2023-02-25	2018-12-06	4.5	4.89	—	4.6	0.015	1.44	1.0	0.09	9.14	0.01	2.330	0.87	0.97	3.2	96.6	0.2	0.24	0.80	0.71	—	4.6	0.003	0.70	0.0	0.05	10.25	0.00	2.143	7.01	0.00	4.1	95.8	0.0	-0.39	0.88	0.83	0.78	—	24718	3828	49	0	137	0	0	logfile
✔	6NBF	0410	2023-02-19	2018-12-07	3.0	3.52	—	3.5	0.005	0.90	0.0	0.06	8.85	0.01	2.307	3.07	0.10	3.0	97.0	0.0	-1.40	0.64	0.79	3.11	3.5	0.003	0.58	0.0	0.04	13.98	0.00	2.136	6.62	1.83	1.9	98.1	0.0	0.75	1.19	0.54	0.75	2.26	9424	1148	7	0	10	0	0	logfile

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