Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6HV8	0287	2023-08-11	2018-10-10	4.4	4.51	—	4.4	0.009	1.62	2.0	0.08	10.20	0.01	1.472	8.97	1.31	22.1	77.3	0.6	-4.84	0.74	0.72	—	4.4	0.003	0.84	0.0	0.05	12.78	0.00	2.083	14.58	0.00	14.2	85.8	0.0	-2.84	1.02	0.74	0.71	—	9206	1184	2	0	2	0	0	logfile
✔	6HV9	0288	2023-08-26	2018-10-10	4.98	4.88	—	4.5	0.012	1.86	14.0	0.09	12.25	0.01	1.447	9.25	0.49	10.9	88.8	0.3	-4.02	0.78	0.66	—	4.5	0.003	0.77	0.0	0.04	13.30	0.00	2.086	16.13	0.02	8.1	91.8	0.1	-1.67	1.65	0.79	0.68	—	47617	6040	18	49	4	0	0	logfile
✘	6HWH	0289	2023-08-25	2018-10-12	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	40632	4916	40	0	420	0	0	logfile
✔	6HXX	0297	2023-08-14	2018-10-18	3.4	3.76	3.51	3.7	0.008	1.14	0.0	0.07	12.31	0.01	1.586	8.35	0.28	8.1	91.9	0.0	-3.79	0.53	0.84	2.51	3.7	0.003	0.69	0.0	0.04	16.37	0.00	2.130	13.65	0.28	7.4	92.6	0.0	-0.24	1.27	0.56	0.86	2.11	65765	7840	70	175	0	0	0	logfile
✔	6HXZ	0298	2023-08-22	2018-10-18	4.1	4.12	3.30	4.1	0.008	1.04	0.0	0.06	11.58	0.01	2.476	0.35	1.95	13.3	86.7	0.0	-5.83	0.63	0.83	—	4.1	0.003	0.75	0.0	0.04	13.24	0.01	2.158	9.13	0.00	9.2	90.8	0.0	-2.43	0.90	0.63	0.82	—	34008	4224	24	0	0	0	0	logfile
✘	6HYD	0308	2023-08-12	2018-10-19	3.9	4.01	—	4.0	0.004	0.85	0.0	0.05	9.33	0.01	2.319	2.63	0.24	5.7	94.0	0.3	-6.69	0.74	0.77	2.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12168	1543	1	0	31	0	0	logfile
✔	6HYP	0309	2023-08-12	2018-10-22	4.4	4.53	—	4.4	0.003	0.72	0.0	0.05	8.72	0.00	1.943	1.67	0.34	7.3	92.2	0.4	-5.99	0.75	0.69	—	4.4	0.004	0.79	0.0	0.04	8.88	0.00	1.995	5.56	0.00	13.4	86.3	0.2	-1.62	0.63	0.77	0.75	—	12392	2082	1	0	192	0	0	logfile
✔	6HZ4	0310	2023-08-23	2018-10-22	3.6	3.69	3.54	3.7	0.013	1.08	0.0	0.06	14.99	0.01	1.969	3.49	1.15	2.8	97.2	0.0	-0.49	0.74	0.78	2.72	3.6	0.003	0.57	0.0	0.04	17.00	0.00	1.882	9.26	0.25	3.6	96.4	0.0	0.58	1.42	0.73	0.78	2.36	36308	2212	14	3	6	0	17933	logfile
✔	6HZ5	0311	2023-08-14	2018-10-22	4.2	4.28	4.18	4.3	0.009	0.97	0.0	0.05	14.60	0.01	1.960	2.94	0.70	2.7	97.3	0.0	-0.55	0.79	0.76	—	4.2	0.003	0.58	0.0	0.04	14.66	0.00	1.803	11.78	0.05	4.9	95.1	0.0	0.00	1.88	0.81	0.78	—	67582	4120	26	6	12	0	33368	logfile
✔	6HZ6	0312	2023-08-14	2018-10-22	4.3	4.35	4.18	4.3	0.010	1.00	0.0	0.05	14.61	0.01	1.941	3.48	0.59	2.8	97.2	0.0	-0.71	0.81	0.77	—	4.3	0.003	0.59	0.0	0.04	14.63	0.00	1.839	13.61	0.03	4.2	95.8	0.0	-0.20	1.90	0.82	0.78	—	67582	4120	26	6	12	0	33368	logfile
✘	6HZ7	0313	2023-08-14	2018-10-22	4.3	4.43	4.32	4.3	0.008	0.97	0.0	0.05	14.60	0.01	1.959	2.86	0.59	2.9	97.1	0.0	-0.47	0.81	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	67582	4120	26	6	12	0	33368	logfile
✔	6HZ8	0314	2023-08-14	2018-10-22	4.3	4.47	4.31	4.4	0.009	0.99	0.0	0.05	14.59	0.01	1.943	3.29	0.59	2.7	97.3	0.0	-0.48	0.77	0.73	—	4.4	0.005	0.67	0.0	0.04	14.60	0.00	1.739	14.95	0.00	5.3	94.7	0.0	-0.46	1.89	0.79	0.76	—	67582	4120	26	6	12	0	33368	logfile
✔	6HZ9	0315	2023-08-14	2018-10-22	4.8	4.94	4.76	4.8	0.009	1.01	0.0	0.05	14.59	0.01	1.957	3.22	0.51	2.9	97.1	0.0	-0.60	0.83	0.76	—	4.8	0.004	0.62	0.0	0.04	14.32	0.00	1.779	15.48	0.00	5.2	94.8	0.0	-0.16	2.82	0.84	0.78	—	67582	4120	26	6	12	0	33368	logfile
✔	6i00	0320	2023-08-19	2018-10-24	3.4	3.52	—	3.5	0.010	1.58	25.0	0.11	11.84	0.02	2.285	7.12	2.72	16.2	83.0	0.7	-5.33	0.58	0.91	4.26	3.5	0.005	0.76	0.0	0.05	15.55	0.01	2.231	7.25	0.57	13.7	85.9	0.4	-2.77	4.31	0.58	0.90	3.08	26712	3468	12	0	0	0	0	logfile
✔	6i0Y	0322	2023-08-22	2018-10-26	3.2	4.80	—	4.7	0.010	1.49	8.0	0.07	15.55	0.01	0.682	13.02	11.41	16.0	77.5	6.5	-5.00	0.59	0.58	0.26	4.7	0.007	0.91	0.0	0.04	16.58	0.01	0.967	25.22	1.81	15.5	82.6	1.9	-3.22	1.65	0.61	0.74	0.89	93619	3551	48	3049	144	439	0	logfile
✔	6i1X	0326	2023-08-10	2018-10-30	3.7	3.83	—	3.8	0.013	1.81	34.0	0.10	14.94	0.01	0.458	50.06	4.35	7.5	90.6	1.9	-3.51	0.50	0.32	0.28	3.8	0.003	0.77	0.0	0.05	16.37	0.00	2.134	17.07	0.28	4.8	95.0	0.2	-0.88	1.06	0.65	0.60	0.83	54915	7290	15	0	0	0	0	logfile
✔	6i1Y	0327	2023-08-10	2018-10-30	3.4	3.52	—	3.4	0.015	2.01	16.0	0.10	13.31	0.02	1.301	75.63	0.72	10.9	85.8	3.3	-5.20	0.79	0.83	1.55	3.4	0.004	0.72	0.0	0.05	16.10	0.01	2.139	15.53	0.48	6.4	93.3	0.2	-1.66	1.47	0.77	0.79	1.57	56520	7440	15	0	0	0	0	logfile
✔	6i2i	0331	2023-08-10	2018-11-01	3.6	3.72	—	3.7	0.009	1.17	0.0	0.06	12.38	0.01	2.019	7.46	0.28	7.1	92.9	0.0	-5.22	0.74	0.74	2.16	3.7	0.004	0.74	0.0	0.05	15.73	0.00	1.880	15.21	0.69	5.1	94.9	0.0	-1.91	0.88	0.76	0.75	1.76	6830	856	4	0	5	0	0	logfile
✔	6i2N	0333	2023-08-15	2018-11-01	3.3	3.45	3.33	3.4	0.007	0.97	0.0	0.05	11.09	0.01	2.323	2.82	0.00	6.0	94.0	0.0	-3.81	0.75	0.79	2.55	3.4	0.003	0.58	0.0	0.04	14.80	0.00	2.127	7.91	0.05	4.5	95.5	0.0	0.66	2.27	0.77	0.84	1.68	18970	2352	14	21	0	0	0	logfile
✔	6N3C	0334	2023-08-09	2018-11-14	3.3	3.53	—	3.5	0.009	1.31	0.0	0.07	14.00	0.00	2.387	18.47	0.00	11.5	88.5	0.0	-5.01	0.52	0.83	4.06	3.5	0.005	0.71	0.0	0.04	15.41	0.00	2.401	13.69	1.32	11.3	88.7	0.0	-3.70	2.40	0.52	0.83	3.98	4260	640	20	0	0	0	0	logfile

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