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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8CBN | 16546 | 2024-04-08 | 2023-01-25 | 3.34 | 3.92 | 3.27 | 3.7 | 0.008 | 0.72 | 0.0 | 0.04 | 25.79 | 0.01 | 0.876 | 6.35 | 2.28 | 4.8 | 95.2 | 0.0 | -5.72 | 0.71 | 0.78 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13669 | 939 | 12 | 300 | 0 | 0 | 0 | logfile |
✔ | 5FN1 | 3236 | 2024-04-07 | 2015-11-10 | 3.9 | 4.00 | — | 4.7 | 0.009 | 1.18 | 0.0 | 0.07 | 12.98 | 0.00 | 0.877 | 53.81 | 0.00 | 8.8 | 88.4 | 2.8 | -3.37 | 0.24 | 0.29 | 0.57 | 4.0 | 0.005 | 0.96 | 2.0 | 0.04 | 17.65 | 0.01 | 1.782 | 22.59 | 2.79 | 10.8 | 88.1 | 1.1 | -0.99 | 2.12 | 0.40 | 0.74 | 1.09 | 61308 | 3906 | 36 | 90 | 0 | 0 | 30078 | logfile |
✔ | 4UY8 | 2773 | 2024-04-14 | 2014-08-29 | 3.8 | 4.07 | — | 4.1 | 0.010 | 1.50 | 8.0 | 0.07 | 23.51 | 0.01 | 0.879 | 12.34 | 11.16 | 16.3 | 76.9 | 6.8 | -5.04 | 0.53 | 0.64 | 0.36 | 4.0 | 0.002 | 0.57 | 0.0 | 0.03 | 23.85 | 0.00 | 1.744 | 53.30 | 5.24 | 12.4 | 85.4 | 2.1 | -3.11 | 1.58 | 0.58 | 0.79 | 1.19 | 92995 | 3468 | 47 | 3049 | 144 | 439 | 8 | logfile |
✔ | 8TB0 | 41144 | 2024-04-08 | 2023-06-28 | 3.47 | 3.76 | 3.50 | 3.8 | 0.003 | 0.65 | 0.0 | 0.04 | 14.04 | 0.00 | 0.884 | 8.94 | 0.11 | 5.6 | 94.4 | 0.0 | -1.82 | 0.62 | 0.73 | 2.14 | 3.8 | 0.003 | 0.62 | 0.0 | 0.04 | 16.10 | 0.00 | 2.129 | 9.89 | 2.54 | 6.1 | 93.9 | 0.0 | -1.33 | 0.72 | 0.64 | 0.77 | 1.82 | 8460 | 1090 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZQF | 11362 | 2024-04-13 | 2020-07-09 | 4.9 | 5.01 | — | 4.8 | 0.009 | 1.42 | 25.0 | 0.08 | 22.52 | 0.01 | 0.887 | 15.97 | 0.00 | 6.2 | 92.3 | 1.5 | -2.85 | 0.69 | 0.48 | — | 4.8 | 0.005 | 0.88 | 0.0 | 0.05 | 22.83 | 0.00 | 1.964 | 18.98 | 0.00 | 12.3 | 87.5 | 0.3 | -2.18 | 1.48 | 0.81 | 0.72 | — | 89582 | 11884 | 43 | 1447 | 1 | 0 | 0 | logfile |
✔ | 5ND9 | 3625 | 2024-04-14 | 2017-03-07 | 3.7 | 3.83 | — | 3.7 | 0.011 | 1.19 | 1.0 | 0.06 | 23.17 | 0.01 | 0.889 | 8.98 | 1.12 | 19.3 | 80.1 | 0.6 | -5.81 | 0.76 | 0.77 | 1.23 | 3.7 | 0.005 | 0.74 | 0.0 | 0.04 | 22.84 | 0.01 | 2.026 | 17.86 | 4.92 | 13.2 | 86.7 | 0.1 | -3.07 | 1.32 | 0.78 | 0.82 | 0.91 | 141051 | 5461 | 52 | 4569 | 0 | 0 | 0 | logfile |
✘ | 6N2Z | 9334 | 2024-04-15 | 2018-11-14 | 3.0 | 3.31 | 3.03 | 3.3 | 0.008 | 1.08 | 0.0 | 0.06 | 10.70 | 0.01 | 0.890 | 9.58 | 0.51 | 3.7 | 96.3 | 0.1 | -2.41 | 0.64 | 0.76 | 3.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35051 | 4692 | 27 | 0 | 26 | 0 | 0 | logfile |
✔ | 7RLC | 24525 | 2024-04-15 | 2021-07-23 | 3.2 | 3.75 | — | 3.2 | 0.003 | 0.65 | 0.0 | 0.04 | 10.11 | 0.00 | 0.891 | 7.51 | 0.00 | 5.3 | 94.4 | 0.3 | -1.71 | 0.83 | 0.79 | 1.78 | 3.2 | 0.003 | 0.58 | 0.0 | 0.04 | 11.64 | 0.00 | 1.897 | 6.18 | 0.80 | 4.8 | 95.2 | 0.0 | -0.20 | 1.27 | 0.89 | 0.89 | 2.34 | 34980 | 4422 | 12 | 0 | 24 | 0 | 0 | logfile |
✔ | 6TE9 | 10477 | 2024-04-08 | 2019-11-11 | 3.58 | 3.70 | — | 3.6 | 0.011 | 1.32 | 0.0 | 0.08 | 10.50 | 0.01 | 0.891 | 13.02 | 0.82 | 9.9 | 90.0 | 0.1 | -5.43 | 0.77 | 0.85 | 3.48 | 3.6 | 0.004 | 0.78 | 0.0 | 0.04 | 15.50 | 0.00 | 2.177 | 14.68 | 4.44 | 7.2 | 92.8 | 0.0 | -1.45 | 0.68 | 0.77 | 0.85 | 2.06 | 66906 | 8892 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 5FLX | 3221 | 2024-04-12 | 2015-10-28 | 3.9 | 4.33 | — | 4.3 | 0.003 | 0.71 | 3.0 | 0.05 | 21.37 | 0.00 | 0.894 | 15.92 | 0.19 | 6.8 | 92.6 | 0.6 | -2.97 | 0.42 | 0.58 | 0.37 | 4.2 | 0.003 | 0.76 | 0.0 | 0.04 | 22.79 | 0.01 | 1.866 | 21.86 | 4.80 | 8.7 | 90.8 | 0.5 | -1.51 | 1.50 | 0.47 | 0.80 | 0.51 | 80592 | 4810 | 40 | 1972 | 76 | 0 | 0 | logfile |
✔ | 6Z5U | 11082 | 2024-04-10 | 2020-05-27 | 3.9 | 4.52 | — | 38.0 | 0.021 | 1.88 | 10.0 | 0.11 | 12.69 | 0.01 | 0.901 | 4.89 | 1.69 | 2.0 | 97.7 | 0.3 | -0.47 | 0.18 | 0.03 | -0.06 | 4.5 | 0.003 | 0.74 | 0.0 | 0.04 | 14.85 | 0.00 | 1.975 | 14.50 | 1.99 | 5.6 | 94.4 | 0.0 | -0.84 | 1.64 | 0.30 | 0.20 | 0.61 | 17880 | 2334 | 14 | 0 | 4 | 0 | 0 | logfile |
✔ | 7SQT | 25394 | 2024-04-05 | 2021-11-06 | 4.0 | 7.13 | 4.01 | 3.5 | 0.010 | 0.70 | 0.0 | 0.05 | 15.78 | 0.01 | 0.902 | 2.31 | 1.25 | 2.5 | 97.5 | 0.0 | 1.39 | 0.94 | 0.84 | — | 3.4 | 0.003 | 0.76 | 0.0 | 0.04 | 15.77 | 0.00 | 2.133 | 10.60 | 0.60 | 1.6 | 98.4 | 0.0 | 1.64 | 3.02 | 0.93 | 0.86 | — | 107136 | 13752 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 8G9U | 29879 | 2024-04-15 | 2023-02-22 | 3.0 | 3.75 | — | 3.3 | 0.011 | 1.08 | 1.0 | 0.06 | 18.47 | 0.01 | 0.905 | 43.90 | 0.55 | 16.7 | 83.0 | 0.3 | -3.97 | 0.86 | 0.80 | 2.71 | 3.4 | 0.004 | 0.86 | 0.0 | 0.05 | 19.89 | 0.01 | 1.164 | 33.10 | 1.97 | 13.2 | 86.7 | 0.2 | -2.58 | 1.44 | 0.87 | 0.81 | 1.87 | 33546 | 3866 | 20 | 136 | 6 | 0 | 0 | logfile |
✔ | 6S05 | 10071 | 2024-04-10 | 2019-06-13 | 3.9 | 3.99 | — | 3.9 | 0.008 | 1.03 | 5.0 | 0.05 | 22.89 | 0.01 | 0.906 | 7.79 | 1.92 | 9.4 | 90.4 | 0.2 | -4.72 | 0.82 | 0.84 | 1.89 | 3.9 | 0.004 | 0.62 | 1.0 | 0.03 | 22.62 | 0.00 | 1.953 | 13.07 | 4.64 | 7.5 | 92.5 | 0.0 | -2.24 | 0.40 | 0.81 | 0.83 | 1.49 | 129144 | 6919 | 53 | 3423 | 218 | 0 | 0 | logfile |
✔ | 7LQW | 23490 | 2024-04-12 | 2021-02-15 | 4.47 | 7.28 | 4.96 | 4.6 | 0.003 | 0.79 | 1.0 | 0.05 | 13.53 | 0.00 | 0.911 | 5.63 | 0.12 | 4.6 | 95.4 | 0.1 | -1.27 | 0.78 | 0.64 | — | 4.7 | 0.004 | 0.72 | 0.0 | 0.04 | 13.00 | 0.00 | 2.108 | 24.09 | 0.12 | 8.3 | 91.6 | 0.1 | -1.43 | 1.44 | 0.87 | 0.83 | — | 25332 | 3374 | 8 | 0 | 26 | 0 | 0 | logfile |
✔ | 7UGQ | 26496 | 2024-04-12 | 2022-03-25 | 3.4 | 3.41 | 3.34 | 3.4 | 0.007 | 1.08 | 4.0 | 0.10 | 18.24 | 0.01 | 0.915 | 7.03 | 7.30 | 7.3 | 92.7 | 0.0 | -4.58 | 0.75 | 0.79 | 2.03 | 3.4 | 0.003 | 0.73 | 0.0 | 0.05 | 15.07 | 0.00 | 2.128 | 11.77 | 4.38 | 7.0 | 93.0 | 0.0 | -2.37 | 1.01 | 0.78 | 0.84 | 1.87 | 26113 | 3138 | 60 | 0 | 134 | 0 | 0 | logfile |
✔ | 6S0X | 10076 | 2024-04-14 | 2019-06-18 | 2.425 | 2.50 | — | 2.5 | 0.021 | 2.13 | 0.0 | 0.11 | 26.57 | 0.01 | 0.917 | 12.73 | 19.66 | 9.7 | 90.2 | 0.1 | -4.36 | 0.60 | 0.63 | 2.41 | 2.5 | 0.004 | 0.84 | 0.0 | 0.05 | 25.54 | 0.00 | 1.508 | 17.00 | 5.32 | 7.1 | 92.9 | 0.0 | -1.98 | 0.67 | 0.62 | 0.62 | 2.34 | 140672 | 5589 | 53 | 4559 | 1 | 0 | 0 | logfile |
✔ | 7MiD | 23847 | 2024-04-07 | 2021-04-16 | 3.56 | 4.10 | — | 3.9 | 0.010 | 1.02 | 0.0 | 0.06 | 20.37 | 0.01 | 0.918 | 14.61 | 5.73 | 8.6 | 91.3 | 0.1 | -1.30 | 0.76 | 0.66 | 0.22 | 4.0 | 0.004 | 0.73 | 0.0 | 0.04 | 20.06 | 0.00 | 2.051 | 11.87 | 2.09 | 6.0 | 94.0 | 0.0 | 0.11 | 1.87 | 0.81 | 0.80 | 0.71 | 9789 | 1080 | 11 | 57 | 6 | 0 | 0 | logfile |
✔ | 8PDL | 17613 | 2024-04-13 | 2023-06-12 | 3.1 | 3.30 | 3.16 | 3.3 | 0.009 | 0.83 | 0.0 | 0.06 | 15.94 | 0.01 | 0.922 | 18.38 | 0.00 | 1.7 | 98.3 | 0.0 | 0.63 | 0.73 | 0.80 | 1.93 | 3.3 | 0.004 | 0.61 | 0.0 | 0.04 | 16.77 | 0.00 | 2.102 | 10.48 | 0.97 | 2.2 | 97.8 | 0.0 | 1.25 | 0.42 | 0.74 | 0.81 | 2.10 | 28610 | 3510 | 20 | 70 | 0 | 0 | 0 | logfile |
✔ | 5LL6 | 4071 | 2024-04-06 | 2016-07-26 | 3.9 | 4.01 | — | 3.9 | 0.012 | 1.50 | 6.0 | 0.11 | 23.63 | 0.01 | 0.924 | 4.96 | 2.53 | 10.6 | 85.7 | 3.7 | -3.86 | 0.69 | 0.82 | 1.20 | 3.9 | 0.005 | 0.77 | 2.0 | 0.04 | 23.27 | 0.01 | 1.691 | 16.42 | 3.70 | 10.1 | 89.0 | 0.9 | -2.12 | 0.82 | 0.69 | 0.79 | 0.99 | 55262 | 3429 | 20 | 1325 | 5 | 0 | 0 | logfile |