Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EET	28057	2023-04-19	2022-09-07	3.1	3.36	3.21	3.4	0.007	0.92	0.0	0.06	12.28	0.00	0.312	9.93	1.07	0.5	99.5	0.0	1.87	0.72	0.82	3.55	3.4	0.037	2.69	0.0	0.32	14.46	0.00	0.378	13.19	0.11	1.1	98.9	0.0	2.07	1.31	0.68	0.83	2.96	107640	13260	60	0	120	0	0	logfile
✔	6GJ1	0009	2023-04-22	2018-05-15	4.7	4.83	—	4.4	0.010	1.51	5.0	0.07	11.65	0.01	0.341	23.90	0.72	18.3	81.3	0.4	-5.15	0.83	0.71	—	4.4	0.003	0.89	0.0	0.05	12.57	0.01	2.086	22.39	0.00	16.4	83.4	0.1	-3.83	1.16	0.85	0.76	—	13013	1638	4	0	0	0	0	logfile
✘	8EGS	28129	2023-04-29	2022-09-13	3.92	4.06	3.83	4.0	0.003	0.57	0.0	0.04	14.97	0.00	0.357	27.78	0.35	3.7	96.3	0.0	-0.21	0.78	0.80	1.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30696	3756	18	0	0	0	0	logfile
✔	6EML	3886	2023-04-28	2017-10-02	3.6	3.65	—	3.6	0.014	1.54	11.0	0.10	18.16	0.01	0.382	12.80	1.27	12.5	86.2	1.3	-4.67	0.66	0.77	2.11	3.6	0.004	0.73	0.0	0.04	18.32	0.00	2.083	15.81	0.86	11.5	88.2	0.2	-1.99	0.77	0.67	0.78	1.50	75886	5233	32	1675	0	0	0	logfile
✘	7K5B	22679	2023-04-23	2020-09-16	4.5	4.62	—	3.9	0.018	1.93	50.0	0.10	12.72	0.01	0.384	37.45	2.43	4.6	94.6	0.8	-0.04	0.66	0.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	119573	15602	21	0	18	0	156	logfile
✔	6SD3	10147	2023-04-22	2019-07-26	3.3	3.67	—	3.2	0.008	0.84	19.0	0.04	13.90	0.01	0.390	14.32	1.24	10.8	88.5	0.7	-5.37	0.79	0.84	2.93	3.2	0.004	0.66	0.0	0.04	15.25	0.00	2.129	11.50	0.31	3.7	96.2	0.0	-0.58	0.68	0.79	0.85	2.38	63144	8212	34	0	0	0	0	logfile
✔	6FVW	4322	2023-04-21	2018-03-05	4.5	4.60	—	4.6	0.035	3.52	888.0	0.20	17.57	0.03	0.436	3.52	2.98	5.7	92.3	2.0	-2.29	0.50	0.54	—	4.5	0.004	0.85	0.0	0.05	14.95	0.00	1.867	19.38	0.03	5.0	94.8	0.2	-0.60	2.34	0.56	0.76	—	110594	14032	59	0	12	20	0	logfile
✔	6i1X	0326	2023-04-20	2018-10-30	3.7	3.83	—	3.8	0.013	1.81	34.0	0.10	14.94	0.01	0.458	50.06	4.35	7.5	90.6	1.9	-3.51	0.50	0.32	0.28	3.8	0.003	0.77	0.0	0.05	16.37	0.00	2.134	17.07	0.28	4.8	95.0	0.2	-0.88	1.06	0.65	0.60	0.83	54915	7290	15	0	0	0	0	logfile
✔	7B70	12063	2023-04-24	2020-12-09	4.0	4.08	—	3.4	0.008	1.13	3.0	0.06	15.94	0.01	0.463	43.27	4.66	11.9	87.8	0.2	-2.44	0.79	0.66	—	3.0	0.005	0.90	0.0	0.05	16.52	0.01	2.081	35.37	0.75	8.5	91.4	0.0	-1.17	0.94	0.82	0.76	—	17084	2112	10	0	0	0	0	logfile
✔	7SSZ	25417	2023-04-23	2021-11-11	3.25	3.49	—	3.5	0.014	1.70	20.0	0.12	14.90	0.01	0.467	7.21	6.31	5.5	94.5	0.0	-2.29	0.56	0.79	3.16	3.5	0.003	0.62	0.0	0.04	15.33	0.00	2.207	6.13	0.12	3.9	96.1	0.0	1.04	1.35	0.70	0.83	3.32	15283	1908	9	0	3	0	0	logfile
✔	6XJA	22204	2023-04-24	2020-06-23	4.0	4.11	—	3.7	0.023	1.93	31.0	0.12	18.04	0.01	0.468	73.73	18.43	6.1	92.2	1.7	-1.93	0.69	0.54	—	3.8	0.006	0.92	0.0	0.05	16.57	0.01	2.021	31.92	1.09	10.6	89.2	0.2	-2.48	2.56	0.76	0.68	—	16441	2156	5	0	0	0	0	logfile
✔	5Y4o	6805	2023-04-22	2017-08-04	3.8	3.55	—	3.6	0.022	2.44	28.0	0.12	19.88	0.02	0.471	78.50	20.31	7.8	87.8	4.5	-2.08	0.55	0.62	0.20	3.6	0.003	0.77	0.0	0.04	17.56	0.00	2.042	14.00	0.45	7.0	92.5	0.5	-0.18	1.75	0.59	0.72	1.52	12341	1561	7	0	0	0	0	logfile
✘	7L20	23121	2023-04-21	2020-12-15	3.15	3.39	—	3.4	0.007	0.87	0.0	0.05	16.21	0.01	0.505	10.97	0.84	7.3	92.2	0.5	-3.38	0.69	0.79	2.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	110234	9454	67	1583	171	0	0	logfile
✔	7URT	26718	2023-04-20	2022-04-22	2.39	2.51	2.52	2.5	0.008	0.96	0.0	0.07	14.02	0.01	0.512	6.62	1.60	0.9	99.1	0.0	1.22	0.71	0.82	4.21	2.5	0.036	3.37	11.0	0.30	17.01	0.01	0.291	9.27	1.09	1.7	98.2	0.1	1.92	1.13	0.69	0.81	2.58	107880	13260	60	0	120	0	0	logfile
✘	7RL5	24516	2023-04-27	2021-07-23	3.8	3.61	—	3.8	0.013	2.04	24.0	0.11	16.71	0.02	0.524	3.05	2.05	3.3	96.3	0.4	-1.86	0.40	0.52	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	106032	6708	24	0	24	0	52716	logfile
✔	7T76	25735	2023-04-24	2021-12-14	4.43	4.68	4.39	4.5	0.022	1.97	2.0	0.14	10.62	0.02	0.530	1.29	0.77	3.4	96.4	0.3	0.31	0.81	0.80	—	4.5	0.003	0.70	0.0	0.05	12.69	0.00	1.066	11.99	0.00	5.1	94.9	0.0	-0.35	1.89	0.81	0.81	—	16587	1934	42	0	104	0	0	logfile
✔	6R1U	4705	2023-04-24	2019-03-15	4.36	6.44	—	3.8	0.009	1.04	0.0	0.06	25.65	0.02	0.544	11.98	6.26	4.7	94.1	1.2	-2.99	0.73	0.45	—	3.9	0.004	0.64	0.0	0.04	25.40	0.00	2.023	15.41	0.00	2.9	97.0	0.1	0.92	1.09	0.89	0.77	—	18394	1550	14	294	4	0	0	logfile
✔	6F07	4163	2023-04-21	2017-11-17	3.6	3.68	—	3.7	0.007	0.96	0.0	0.05	10.28	0.01	0.559	5.81	0.70	6.1	93.7	0.2	-3.04	0.47	0.57	1.27	3.6	0.003	0.69	0.0	0.04	15.52	0.00	2.155	11.17	0.18	4.4	95.6	0.0	0.99	1.53	0.56	0.70	0.72	10149	1227	4	0	2	0	0	logfile
✔	6TAT	10427	2023-04-20	2019-10-30	3.7	2.79	—	2.9	0.005	0.91	0.0	0.05	15.56	0.01	0.562	5.86	0.68	6.8	93.2	0.0	-4.23	0.61	0.78	2.00	2.9	0.003	0.60	0.0	0.04	18.03	0.00	2.263	6.15	0.68	6.4	93.6	0.0	0.32	0.56	0.61	0.78	1.33	6790	820	5	0	0	0	0	logfile
✔	6o6C	0633	2023-04-29	2019-03-05	3.1	3.26	—	3.2	0.011	1.23	0.0	0.05	12.34	0.01	0.570	3.74	0.09	6.7	90.7	2.5	-1.64	0.83	0.81	2.51	3.2	0.003	0.70	0.0	0.04	16.01	0.00	1.992	11.50	0.37	5.9	93.7	0.4	-0.39	2.17	0.84	0.84	2.05	30166	3660	19	52	9	0	0	logfile

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