Table showing results for February 2023

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RJC	24484	2023-02-26	2021-07-20	3.3	3.46	—	3.4	0.007	0.82	2.0	0.05	13.58	0.00	1.018	11.40	0.20	4.6	95.2	0.2	0.13	0.56	0.68	3.90	3.4	0.004	0.59	0.0	0.04	15.37	0.00	1.959	9.63	0.20	3.9	96.1	0.0	0.68	0.80	0.66	0.81	3.67	28373	1907	13	0	6	0	13664	logfile
✔	6C23	7334	2023-02-20	2018-01-05	3.9	3.96	3.82	3.9	0.013	1.59	6.0	0.11	12.20	0.01	1.020	11.36	1.02	14.7	83.7	1.6	-4.76	0.72	0.82	2.32	3.9	0.005	0.87	0.0	0.05	15.99	0.00	2.080	18.87	0.86	11.2	88.6	0.2	-2.68	1.23	0.72	0.78	1.93	13440	1688	12	0	135	0	0	logfile
✔	3JAC	6343	2023-02-21	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	57.64	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.73	0.0	0.06	13.93	0.01	1.944	77.57	0.00	26.7	71.5	1.8	-5.39	3.71	0.54	0.61	—	15741	1716	3	0	1038	0	0	logfile
✔	7DMP	30766	2023-02-20	2020-12-05	3.2	2.58	—	3.3	0.003	0.76	1.0	0.05	14.92	0.01	1.020	10.12	1.61	7.4	92.6	0.0	-4.33	0.72	0.69	2.30	3.3	0.003	0.72	0.0	0.04	17.00	0.00	2.018	17.63	0.84	8.2	91.8	0.0	-2.51	0.74	0.76	0.76	2.30	12308	1528	6	0	0	0	0	logfile
✔	5FN3	3238	2023-02-19	2015-11-10	4.1	4.53	—	4.1	0.011	1.81	26.0	0.10	18.64	0.01	1.021	20.42	11.34	10.7	85.3	4.0	-1.54	0.66	0.60	—	4.1	0.004	0.86	0.0	0.04	13.92	0.01	2.083	20.37	0.00	9.0	90.1	0.8	-0.82	2.23	0.71	0.79	—	10291	1318	5	0	0	0	0	logfile
✔	7XK3	33242	2023-02-21	2022-04-19	3.1	3.33	3.10	3.3	0.007	0.93	6.0	0.05	15.40	0.01	1.026	6.23	0.58	3.3	96.5	0.2	-2.55	0.71	0.88	3.79	3.3	0.002	0.52	0.0	0.04	15.91	0.00	2.168	6.23	0.32	2.8	97.2	0.0	0.30	0.35	0.72	0.90	2.97	14846	1894	11	0	11	0	0	logfile
✔	4UQ8	2676	2023-02-26	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	64.12	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.54	0.0	0.41	5.47	0.00	2.110	23.19	0.00	0.0	0.0	0.0	—	2.11	0.61	0.83	—	28647	33	54	0	5686	0	0	logfile
✔	6R25	4710	2023-02-22	2019-03-15	4.61	8.06	—	3.8	0.009	1.05	0.0	0.06	25.57	0.02	1.036	12.86	5.67	4.9	93.8	1.3	-2.97	0.74	0.45	—	3.9	0.004	0.66	0.0	0.04	26.12	0.00	1.999	17.71	0.00	2.8	97.1	0.1	1.14	1.04	0.89	0.72	—	18654	1544	16	294	4	314	0	logfile
✔	7WTE	32780	2023-02-26	2022-02-04	3.3	4.21	—	3.5	0.004	0.74	2.0	0.05	14.49	0.00	1.040	11.76	1.95	6.5	93.4	0.1	-0.47	0.85	0.77	0.95	3.5	0.003	0.67	0.0	0.04	15.59	0.00	2.118	11.45	0.10	6.3	93.7	0.0	-0.28	1.27	0.87	0.81	0.85	27160	3493	6	0	4	0	0	logfile
✔	5TJ5	8409	2023-02-21	2016-10-03	3.9	4.19	—	4.1	0.010	1.29	0.0	0.05	9.13	0.01	1.040	27.77	0.12	14.4	85.2	0.4	-6.37	0.62	0.69	1.87	4.2	0.003	0.92	0.0	0.05	12.87	0.00	2.125	14.29	1.22	5.5	94.3	0.2	0.50	1.77	0.62	0.73	1.13	14976	2102	14	0	365	0	0	logfile
✔	7Woo	32653	2023-02-26	2022-01-22	3.71	4.08	—	3.9	0.010	1.69	139.0	0.10	15.86	0.01	1.041	23.12	4.33	9.3	88.5	2.2	-3.11	0.47	0.44	0.31	3.9	0.003	0.80	0.0	0.04	16.47	0.00	2.064	14.96	0.39	8.4	91.3	0.3	-0.43	1.64	0.47	0.44	0.12	66949	8644	12	0	0	0	0	logfile
✔	7LJ3	23388	2023-02-25	2021-01-28	2.9	2.92	—	3.4	0.005	0.72	0.0	0.04	17.12	0.00	1.041	27.61	3.30	3.6	96.0	0.4	0.29	0.10	0.23	-0.14	2.9	0.003	0.60	0.0	0.03	19.24	0.00	2.017	7.67	4.04	4.5	95.4	0.2	2.58	1.42	0.22	0.79	1.76	25714	2564	12	225	0	0	0	logfile
✔	7CZ6	30507	2023-02-17	2020-09-07	4.1	4.04	—	4.1	0.009	1.62	0.0	0.05	8.57	0.01	1.047	61.25	0.00	8.1	91.9	0.0	-1.66	0.68	0.64	—	4.1	0.004	0.84	0.0	0.05	11.13	0.01	2.108	15.25	0.00	5.5	94.5	0.0	-2.13	0.91	0.65	0.72	—	4535	630	5	0	0	0	0	logfile
✔	5XTD	6773	2023-02-25	2017-06-19	3.7	3.83	—	3.7	0.012	1.58	1.0	0.07	12.18	0.01	1.049	27.83	0.83	6.5	90.6	2.9	-1.69	0.75	0.72	2.51	3.7	0.004	0.82	0.0	0.04	15.47	0.01	2.093	17.97	0.45	6.8	92.6	0.6	-0.26	1.40	0.78	0.78	1.53	66789	8191	62	0	30	0	0	logfile
✔	6XBW	22121	2023-02-24	2020-06-07	3.37	3.48	—	3.4	0.010	1.30	80.0	0.09	15.40	0.01	1.049	8.64	0.61	3.3	96.5	0.3	-5.55	0.74	0.85	2.39	3.4	0.004	0.71	0.0	0.04	16.67	0.00	2.016	10.92	0.46	5.4	94.6	0.1	-0.70	0.71	0.76	0.89	2.18	63090	8186	38	0	18	0	0	logfile
✔	7MCA	23755	2023-02-25	2021-04-01	3.6	3.75	3.58	3.8	0.007	0.98	0.0	0.06	19.21	0.01	1.053	8.11	0.75	8.2	91.7	0.1	-5.13	0.77	0.79	2.32	3.7	0.005	0.70	0.0	0.04	20.09	0.00	1.910	11.15	0.71	9.2	90.8	0.0	-2.25	1.98	0.77	0.81	2.15	24692	2760	13	100	8	0	0	logfile
✘	6iGM	9668	2023-02-24	2018-09-25	4.0	4.14	—	4.1	0.004	0.88	0.0	0.05	10.13	0.01	1.054	20.76	2.70	7.3	91.6	1.1	-4.30	0.70	0.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24257	3054	9	0	62	0	0	logfile
✔	7K36	22650	2023-02-22	2020-09-10	3.3	3.90	—	3.5	0.007	0.74	0.0	0.18	15.82	0.00	1.054	15.42	7.26	6.0	94.0	0.0	-2.36	0.84	0.85	2.39	3.5	0.003	0.66	0.0	0.04	16.24	0.00	2.072	11.60	0.18	3.3	96.7	0.0	1.58	0.60	0.84	0.86	1.82	16613	2183	12	0	5	0	0	logfile
✔	7V2A	31639	2023-02-26	2021-08-07	3.4	3.63	—	3.5	0.011	0.94	5.0	0.05	15.34	0.01	1.059	25.66	2.50	9.5	90.2	0.3	-3.95	0.82	0.84	2.51	3.5	0.004	0.65	0.0	0.04	16.09	0.00	2.151	10.19	0.30	5.3	94.5	0.2	-0.71	0.52	0.81	0.84	2.53	28017	3657	12	0	24	0	0	logfile
✔	6E10	8951	2023-02-22	2018-07-08	4.16	4.27	—	4.2	0.008	1.16	11.0	0.07	10.73	0.01	1.063	10.41	1.07	5.8	93.8	0.4	-4.45	0.79	0.72	—	4.1	0.005	0.78	0.0	0.05	12.99	0.00	2.041	18.19	0.05	7.3	92.4	0.2	-0.84	1.49	0.83	0.81	—	57352	6823	34	0	359	0	0	logfile

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