Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5M3F	4147	2022-07-06	2016-10-14	3.8	3.88	3.92	3.9	0.006	0.89	0.0	0.05	11.59	0.01	0.477	14.45	1.14	6.6	93.1	0.3	-3.19	0.59	0.74	2.61	3.9	0.008	0.89	0.0	0.05	15.86	0.01	1.966	11.82	0.11	4.7	95.2	0.1	-0.91	1.66	0.64	0.78	1.84	34032	4161	22	47	8	0	0	logfile
✔	7ASE	11893	2022-07-06	2020-10-27	3.33	3.38	—	3.3	0.019	2.20	149.0	0.14	16.87	0.02	0.502	9.41	3.37	14.2	79.1	6.8	-4.38	0.46	0.57	1.25	3.3	0.008	1.02	9.0	0.04	16.79	0.01	1.944	12.60	0.44	11.6	87.3	1.2	-1.66	1.44	0.53	0.70	1.33	136847	11195	54	2225	3	0	0	logfile
✔	7L20	23121	2022-07-03	2020-12-15	3.15	3.39	—	3.4	0.007	0.87	0.0	0.05	16.21	0.01	0.505	11.02	0.84	7.3	92.2	0.5	-3.38	0.69	0.79	2.68	3.4	0.005	0.68	0.0	0.04	17.33	0.01	1.357	10.12	0.39	7.2	92.7	0.1	-0.58	1.22	0.72	0.85	2.28	110234	9454	67	1583	171	0	0	logfile
✔	7oDW	12853	2022-07-05	2021-04-30	2.5	3.55	2.40	2.6	0.006	0.74	0.0	0.05	18.10	0.00	0.513	10.78	1.45	2.9	97.1	0.0	-0.07	0.86	0.85	3.72	2.6	0.004	0.60	0.0	0.04	17.90	0.00	2.131	7.18	1.84	1.9	98.1	0.0	1.24	0.66	0.87	0.87	3.16	121560	15900	60	0	0	0	0	logfile
✔	6SPG	10285	2022-07-07	2019-09-01	3.34	3.45	—	3.4	0.007	0.91	0.0	0.05	16.43	0.01	0.514	3.98	0.30	8.6	91.4	0.0	-5.03	0.84	0.81	2.64	3.4	0.006	0.73	2.0	0.04	16.98	0.01	1.543	9.42	0.15	7.9	92.1	0.0	-2.60	0.66	0.86	0.84	2.01	141963	5779	58	4526	172	0	0	logfile
✔	7TQL	26067	2022-07-05	2022-01-26	3.2	2.54	3.55	2.8	0.012	1.50	15.0	0.11	16.04	0.00	0.514	4.16	1.16	6.6	92.8	0.6	-2.65	0.71	0.76	2.00	2.9	0.004	0.71	0.0	0.04	17.09	0.01	2.096	12.98	1.20	5.4	94.6	0.1	-0.75	0.52	0.79	0.80	1.61	80976	5508	43	1731	5	0	0	logfile
✘	6Y7C	10713	2022-07-05	2020-02-28	3.8	5.42	3.84	2.8	0.013	1.22	1.0	0.06	18.55	0.01	0.520	10.36	1.00	14.3	85.4	0.3	-5.44	0.89	0.71	0.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	79690	5381	34	1735	0	0	0	logfile
✘	7RL5	24516	2022-07-05	2021-07-23	3.8	3.61	—	3.8	0.013	2.04	24.0	0.11	16.71	0.02	0.524	3.17	2.05	3.3	96.3	0.4	-1.86	0.40	0.52	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	106032	6708	24	0	24	0	52716	logfile
✘	7SSL	25409	2022-07-11	2021-11-11	3.8	3.94	4.31	3.8	0.009	1.02	0.0	0.08	15.30	0.01	0.524	13.16	1.11	12.6	87.2	0.2	-5.13	0.76	0.73	0.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	153348	6626	59	4736	1	0	0	logfile
✔	5iYD	8138	2022-07-07	2016-03-24	3.9	3.83	—	3.9	0.011	1.73	8.0	0.08	17.24	0.01	0.526	22.33	3.28	8.5	87.8	3.8	-2.10	0.70	0.62	1.39	3.8	0.007	1.06	1.0	0.05	19.28	0.01	1.908	22.59	0.63	8.0	91.4	0.7	-0.99	1.15	0.79	0.79	1.09	46709	5407	31	166	13	0	0	logfile
✘	6QX9	4665	2022-07-07	2019-03-07	3.28	3.33	—	3.3	0.011	1.31	35.0	0.08	16.06	0.01	0.530	13.00	2.29	5.5	94.1	0.3	-3.26	0.46	0.51	1.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	137494	15560	77	565	36	0	0	logfile
✔	6R1U	4705	2022-07-04	2019-03-15	4.36	6.44	—	3.8	0.009	1.04	0.0	0.06	25.65	0.02	0.544	12.09	6.26	4.7	94.1	1.2	-2.99	0.73	0.45	—	3.9	0.003	0.65	0.0	0.04	25.18	0.00	2.059	11.83	0.00	2.5	97.4	0.1	1.08	1.07	0.89	0.78	—	18394	1550	14	294	4	0	0	logfile
✘	6YAN	10762	2022-07-05	2020-03-12	3.48	3.56	—	3.5	0.018	2.02	24.0	0.13	15.58	0.02	0.554	3.68	1.68	9.0	87.4	3.6	-4.09	0.71	0.66	1.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	84251	5610	39	1855	0	0	0	logfile
✔	6F07	4163	2022-07-03	2017-11-17	3.6	3.68	—	3.7	0.007	0.96	0.0	0.05	10.28	0.01	0.559	5.78	0.70	6.1	93.7	0.2	-3.04	0.47	0.57	1.27	3.6	0.012	0.85	0.0	0.04	15.61	0.01	2.110	10.88	0.61	4.9	95.1	0.0	0.86	1.53	0.56	0.71	0.61	10149	1227	4	0	2	0	0	logfile
✔	6SFX	10162	2022-07-04	2019-08-02	4.0	3.90	3.75	3.9	0.012	1.02	1.0	0.06	16.15	0.01	0.560	24.28	0.14	7.7	92.0	0.3	-4.75	0.73	0.74	—	3.8	0.004	0.91	0.0	0.05	18.21	0.01	2.058	23.86	0.74	4.7	95.2	0.0	-1.10	1.52	0.74	0.76	—	20196	2602	14	0	0	0	0	logfile
✔	6TAT	10427	2022-07-03	2019-10-30	3.7	2.79	—	2.9	0.005	0.91	0.0	0.05	15.56	0.01	0.562	5.86	0.68	6.8	93.2	0.0	-4.23	0.61	0.78	2.00	2.9	0.003	0.60	0.0	0.04	18.01	0.00	2.271	6.00	0.54	6.3	93.7	0.0	0.37	0.56	0.61	0.78	1.29	6790	820	5	0	0	0	0	logfile
✔	6RiB	4887	2022-07-04	2019-04-23	4.2	3.32	—	4.0	0.008	1.12	0.0	0.06	18.48	0.00	0.563	15.47	9.09	10.1	89.9	0.0	-5.68	0.73	0.66	—	3.9	0.012	1.24	0.0	0.05	14.40	0.01	1.873	27.07	0.00	14.3	85.7	0.0	-5.63	1.94	0.77	0.74	—	16368	2222	22	0	0	0	0	logfile
✘	6o6C	0633	2022-07-06	2019-03-05	3.1	3.26	—	3.2	0.011	1.23	0.0	0.05	12.21	0.01	0.570	4.18	0.09	6.7	90.7	2.5	-1.64	0.83	0.81	2.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30166	3660	19	52	9	0	0	logfile
✔	5LKi	4068	2022-07-03	2016-07-22	3.46	3.72	—	3.5	0.013	1.24	5.0	0.06	10.71	0.01	0.579	39.63	0.18	7.7	91.7	0.6	-4.39	0.65	0.79	2.37	3.5	0.003	0.82	0.0	0.04	15.10	0.00	2.086	15.11	0.39	6.9	92.7	0.4	0.29	0.82	0.63	0.80	1.58	55415	7135	5	0	0	0	0	logfile
✘	6UD3	20731	2022-07-04	2019-09-18	3.5	4.06	3.46	3.8	0.013	1.54	0.0	0.10	11.83	0.01	0.584	7.52	0.00	4.6	95.4	0.0	-1.90	0.79	0.78	1.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14346	1765	10	0	6	0	0	logfile

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