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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5M3F | 4147 | 2022-07-06 | 2016-10-14 | 3.8 | 3.88 | 3.92 | 3.9 | 0.006 | 0.89 | 0.0 | 0.05 | 11.59 | 0.01 | 0.477 | 14.45 | 1.14 | 6.6 | 93.1 | 0.3 | -3.19 | 0.59 | 0.74 | 2.61 | 3.9 | 0.008 | 0.89 | 0.0 | 0.05 | 15.86 | 0.01 | 1.966 | 11.82 | 0.11 | 4.7 | 95.2 | 0.1 | -0.91 | 1.66 | 0.64 | 0.78 | 1.84 | 34032 | 4161 | 22 | 47 | 8 | 0 | 0 | logfile |
✔ | 7ASE | 11893 | 2022-07-06 | 2020-10-27 | 3.33 | 3.38 | — | 3.3 | 0.019 | 2.20 | 149.0 | 0.14 | 16.87 | 0.02 | 0.502 | 9.41 | 3.37 | 14.2 | 79.1 | 6.8 | -4.38 | 0.46 | 0.57 | 1.25 | 3.3 | 0.008 | 1.02 | 9.0 | 0.04 | 16.79 | 0.01 | 1.944 | 12.60 | 0.44 | 11.6 | 87.3 | 1.2 | -1.66 | 1.44 | 0.53 | 0.70 | 1.33 | 136847 | 11195 | 54 | 2225 | 3 | 0 | 0 | logfile |
✔ | 7L20 | 23121 | 2022-07-03 | 2020-12-15 | 3.15 | 3.39 | — | 3.4 | 0.007 | 0.87 | 0.0 | 0.05 | 16.21 | 0.01 | 0.505 | 11.02 | 0.84 | 7.3 | 92.2 | 0.5 | -3.38 | 0.69 | 0.79 | 2.68 | 3.4 | 0.005 | 0.68 | 0.0 | 0.04 | 17.33 | 0.01 | 1.357 | 10.12 | 0.39 | 7.2 | 92.7 | 0.1 | -0.58 | 1.22 | 0.72 | 0.85 | 2.28 | 110234 | 9454 | 67 | 1583 | 171 | 0 | 0 | logfile |
✔ | 7oDW | 12853 | 2022-07-05 | 2021-04-30 | 2.5 | 3.55 | 2.40 | 2.6 | 0.006 | 0.74 | 0.0 | 0.05 | 18.10 | 0.00 | 0.513 | 10.78 | 1.45 | 2.9 | 97.1 | 0.0 | -0.07 | 0.86 | 0.85 | 3.72 | 2.6 | 0.004 | 0.60 | 0.0 | 0.04 | 17.90 | 0.00 | 2.131 | 7.18 | 1.84 | 1.9 | 98.1 | 0.0 | 1.24 | 0.66 | 0.87 | 0.87 | 3.16 | 121560 | 15900 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SPG | 10285 | 2022-07-07 | 2019-09-01 | 3.34 | 3.45 | — | 3.4 | 0.007 | 0.91 | 0.0 | 0.05 | 16.43 | 0.01 | 0.514 | 3.98 | 0.30 | 8.6 | 91.4 | 0.0 | -5.03 | 0.84 | 0.81 | 2.64 | 3.4 | 0.006 | 0.73 | 2.0 | 0.04 | 16.98 | 0.01 | 1.543 | 9.42 | 0.15 | 7.9 | 92.1 | 0.0 | -2.60 | 0.66 | 0.86 | 0.84 | 2.01 | 141963 | 5779 | 58 | 4526 | 172 | 0 | 0 | logfile |
✔ | 7TQL | 26067 | 2022-07-05 | 2022-01-26 | 3.2 | 2.54 | 3.55 | 2.8 | 0.012 | 1.50 | 15.0 | 0.11 | 16.04 | 0.00 | 0.514 | 4.16 | 1.16 | 6.6 | 92.8 | 0.6 | -2.65 | 0.71 | 0.76 | 2.00 | 2.9 | 0.004 | 0.71 | 0.0 | 0.04 | 17.09 | 0.01 | 2.096 | 12.98 | 1.20 | 5.4 | 94.6 | 0.1 | -0.75 | 0.52 | 0.79 | 0.80 | 1.61 | 80976 | 5508 | 43 | 1731 | 5 | 0 | 0 | logfile |
✘ | 6Y7C | 10713 | 2022-07-05 | 2020-02-28 | 3.8 | 5.42 | 3.84 | 2.8 | 0.013 | 1.22 | 1.0 | 0.06 | 18.55 | 0.01 | 0.520 | 10.36 | 1.00 | 14.3 | 85.4 | 0.3 | -5.44 | 0.89 | 0.71 | 0.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 79690 | 5381 | 34 | 1735 | 0 | 0 | 0 | logfile |
✘ | 7RL5 | 24516 | 2022-07-05 | 2021-07-23 | 3.8 | 3.61 | — | 3.8 | 0.013 | 2.04 | 24.0 | 0.11 | 16.71 | 0.02 | 0.524 | 3.17 | 2.05 | 3.3 | 96.3 | 0.4 | -1.86 | 0.40 | 0.52 | 2.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 106032 | 6708 | 24 | 0 | 24 | 0 | 52716 | logfile |
✘ | 7SSL | 25409 | 2022-07-11 | 2021-11-11 | 3.8 | 3.94 | 4.31 | 3.8 | 0.009 | 1.02 | 0.0 | 0.08 | 15.30 | 0.01 | 0.524 | 13.16 | 1.11 | 12.6 | 87.2 | 0.2 | -5.13 | 0.76 | 0.73 | 0.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 153348 | 6626 | 59 | 4736 | 1 | 0 | 0 | logfile |
✔ | 5iYD | 8138 | 2022-07-07 | 2016-03-24 | 3.9 | 3.83 | — | 3.9 | 0.011 | 1.73 | 8.0 | 0.08 | 17.24 | 0.01 | 0.526 | 22.33 | 3.28 | 8.5 | 87.8 | 3.8 | -2.10 | 0.70 | 0.62 | 1.39 | 3.8 | 0.007 | 1.06 | 1.0 | 0.05 | 19.28 | 0.01 | 1.908 | 22.59 | 0.63 | 8.0 | 91.4 | 0.7 | -0.99 | 1.15 | 0.79 | 0.79 | 1.09 | 46709 | 5407 | 31 | 166 | 13 | 0 | 0 | logfile |
✘ | 6QX9 | 4665 | 2022-07-07 | 2019-03-07 | 3.28 | 3.33 | — | 3.3 | 0.011 | 1.31 | 35.0 | 0.08 | 16.06 | 0.01 | 0.530 | 13.00 | 2.29 | 5.5 | 94.1 | 0.3 | -3.26 | 0.46 | 0.51 | 1.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 137494 | 15560 | 77 | 565 | 36 | 0 | 0 | logfile |
✔ | 6R1U | 4705 | 2022-07-04 | 2019-03-15 | 4.36 | 6.44 | — | 3.8 | 0.009 | 1.04 | 0.0 | 0.06 | 25.65 | 0.02 | 0.544 | 12.09 | 6.26 | 4.7 | 94.1 | 1.2 | -2.99 | 0.73 | 0.45 | — | 3.9 | 0.003 | 0.65 | 0.0 | 0.04 | 25.18 | 0.00 | 2.059 | 11.83 | 0.00 | 2.5 | 97.4 | 0.1 | 1.08 | 1.07 | 0.89 | 0.78 | — | 18394 | 1550 | 14 | 294 | 4 | 0 | 0 | logfile |
✘ | 6YAN | 10762 | 2022-07-05 | 2020-03-12 | 3.48 | 3.56 | — | 3.5 | 0.018 | 2.02 | 24.0 | 0.13 | 15.58 | 0.02 | 0.554 | 3.68 | 1.68 | 9.0 | 87.4 | 3.6 | -4.09 | 0.71 | 0.66 | 1.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 84251 | 5610 | 39 | 1855 | 0 | 0 | 0 | logfile |
✔ | 6F07 | 4163 | 2022-07-03 | 2017-11-17 | 3.6 | 3.68 | — | 3.7 | 0.007 | 0.96 | 0.0 | 0.05 | 10.28 | 0.01 | 0.559 | 5.78 | 0.70 | 6.1 | 93.7 | 0.2 | -3.04 | 0.47 | 0.57 | 1.27 | 3.6 | 0.012 | 0.85 | 0.0 | 0.04 | 15.61 | 0.01 | 2.110 | 10.88 | 0.61 | 4.9 | 95.1 | 0.0 | 0.86 | 1.53 | 0.56 | 0.71 | 0.61 | 10149 | 1227 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6SFX | 10162 | 2022-07-04 | 2019-08-02 | 4.0 | 3.90 | 3.75 | 3.9 | 0.012 | 1.02 | 1.0 | 0.06 | 16.15 | 0.01 | 0.560 | 24.28 | 0.14 | 7.7 | 92.0 | 0.3 | -4.75 | 0.73 | 0.74 | — | 3.8 | 0.004 | 0.91 | 0.0 | 0.05 | 18.21 | 0.01 | 2.058 | 23.86 | 0.74 | 4.7 | 95.2 | 0.0 | -1.10 | 1.52 | 0.74 | 0.76 | — | 20196 | 2602 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TAT | 10427 | 2022-07-03 | 2019-10-30 | 3.7 | 2.79 | — | 2.9 | 0.005 | 0.91 | 0.0 | 0.05 | 15.56 | 0.01 | 0.562 | 5.86 | 0.68 | 6.8 | 93.2 | 0.0 | -4.23 | 0.61 | 0.78 | 2.00 | 2.9 | 0.003 | 0.60 | 0.0 | 0.04 | 18.01 | 0.00 | 2.271 | 6.00 | 0.54 | 6.3 | 93.7 | 0.0 | 0.37 | 0.56 | 0.61 | 0.78 | 1.29 | 6790 | 820 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RiB | 4887 | 2022-07-04 | 2019-04-23 | 4.2 | 3.32 | — | 4.0 | 0.008 | 1.12 | 0.0 | 0.06 | 18.48 | 0.00 | 0.563 | 15.47 | 9.09 | 10.1 | 89.9 | 0.0 | -5.68 | 0.73 | 0.66 | — | 3.9 | 0.012 | 1.24 | 0.0 | 0.05 | 14.40 | 0.01 | 1.873 | 27.07 | 0.00 | 14.3 | 85.7 | 0.0 | -5.63 | 1.94 | 0.77 | 0.74 | — | 16368 | 2222 | 22 | 0 | 0 | 0 | 0 | logfile |
✘ | 6o6C | 0633 | 2022-07-06 | 2019-03-05 | 3.1 | 3.26 | — | 3.2 | 0.011 | 1.23 | 0.0 | 0.05 | 12.21 | 0.01 | 0.570 | 4.18 | 0.09 | 6.7 | 90.7 | 2.5 | -1.64 | 0.83 | 0.81 | 2.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30166 | 3660 | 19 | 52 | 9 | 0 | 0 | logfile |
✔ | 5LKi | 4068 | 2022-07-03 | 2016-07-22 | 3.46 | 3.72 | — | 3.5 | 0.013 | 1.24 | 5.0 | 0.06 | 10.71 | 0.01 | 0.579 | 39.63 | 0.18 | 7.7 | 91.7 | 0.6 | -4.39 | 0.65 | 0.79 | 2.37 | 3.5 | 0.003 | 0.82 | 0.0 | 0.04 | 15.10 | 0.00 | 2.086 | 15.11 | 0.39 | 6.9 | 92.7 | 0.4 | 0.29 | 0.82 | 0.63 | 0.80 | 1.58 | 55415 | 7135 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 6UD3 | 20731 | 2022-07-04 | 2019-09-18 | 3.5 | 4.06 | 3.46 | 3.8 | 0.013 | 1.54 | 0.0 | 0.10 | 11.83 | 0.01 | 0.584 | 7.52 | 0.00 | 4.6 | 95.4 | 0.0 | -1.90 | 0.79 | 0.78 | 1.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14346 | 1765 | 10 | 0 | 6 | 0 | 0 | logfile |