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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5iT9 | 8124 | 2024-03-17 | 2016-03-16 | 3.8 | 3.86 | 3.80 | 3.9 | 0.007 | 1.31 | 42.0 | 0.10 | 25.57 | 0.01 | 0.713 | 10.39 | 9.44 | 11.2 | 84.3 | 4.6 | -3.05 | 0.60 | 0.76 | 0.99 | 3.8 | 0.004 | 0.78 | 0.0 | 0.04 | 24.31 | 0.01 | 1.854 | 16.77 | 5.50 | 11.5 | 87.2 | 1.3 | -1.85 | 1.70 | 0.62 | 0.78 | 0.92 | 80144 | 4848 | 43 | 1972 | 83 | 0 | 0 | logfile |
✔ | 6DiD | 7896 | 2024-03-24 | 2018-05-23 | 4.71 | 5.51 | — | 4.7 | 0.014 | 1.61 | 0.0 | 0.10 | 15.54 | 0.01 | 0.718 | 10.44 | 1.83 | 2.4 | 97.6 | 0.0 | 1.29 | 0.72 | 0.51 | — | 4.7 | 0.004 | 0.69 | 0.0 | 0.04 | 11.02 | 0.00 | 1.792 | 51.13 | 0.53 | 7.2 | 92.8 | 0.0 | 0.29 | 0.97 | 0.81 | 0.67 | — | 34674 | 3009 | 54 | 0 | 147 | 0 | 9465 | logfile |
✔ | 6QX7 | 4662 | 2024-03-19 | 2019-03-07 | 3.8 | 3.98 | — | 3.9 | 0.006 | 1.16 | 0.0 | 0.06 | 11.55 | 0.01 | 0.726 | 11.76 | 1.75 | 14.3 | 84.1 | 1.6 | -4.94 | 0.63 | 0.59 | 1.19 | 3.9 | 0.004 | 0.88 | 0.0 | 0.05 | 17.37 | 0.00 | 2.084 | 20.15 | 3.11 | 14.3 | 85.3 | 0.4 | -1.88 | 1.13 | 0.65 | 0.58 | 0.73 | 25164 | 3072 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8H40 | 34476 | 2024-03-22 | 2022-10-09 | 3.6 | 4.14 | 3.56 | 3.3 | 0.059 | 3.51 | 163.0 | 0.18 | 20.66 | 0.02 | 0.727 | 175.67 | 4.55 | 35.8 | 60.4 | 3.8 | -7.43 | 0.85 | 0.79 | 0.76 | 3.3 | 0.004 | 0.94 | 0.0 | 0.05 | 20.72 | 0.01 | 1.897 | 22.17 | 3.19 | 11.8 | 87.6 | 0.6 | -2.66 | 1.95 | 0.87 | 0.81 | 0.98 | 34833 | 4130 | 11 | 120 | 0 | 0 | 0 | logfile |
✔ | 8EN7 | 28269 | 2024-03-16 | 2022-09-28 | 1.68 | 1.48 | 1.71 | 1.6 | 0.012 | 1.29 | 0.0 | 0.07 | 15.67 | 0.01 | 0.731 | 8.76 | 1.27 | 1.2 | 98.8 | 0.0 | 2.40 | 0.61 | 0.75 | 8.54 | 1.6 | 0.002 | 0.54 | 0.0 | 0.04 | 15.27 | 0.00 | 2.235 | 4.30 | 0.63 | 1.2 | 98.8 | 0.0 | 5.30 | 0.41 | 0.75 | 0.85 | 7.89 | 37614 | 4128 | 54 | 0 | 6 | 2544 | 0 | logfile |
✔ | 8EMQ | 28259 | 2024-03-16 | 2022-09-28 | 1.66 | 1.59 | 1.68 | 1.6 | 0.011 | 1.31 | 0.0 | 0.07 | 15.25 | 0.01 | 0.733 | 5.98 | 1.91 | 0.6 | 99.4 | 0.0 | 2.37 | 0.66 | 0.78 | 9.05 | 1.6 | 0.003 | 0.59 | 0.0 | 0.04 | 14.39 | 0.00 | 2.083 | 3.47 | 0.64 | 1.2 | 98.8 | 0.0 | 5.32 | 0.38 | 0.81 | 0.89 | 8.89 | 37805 | 4128 | 72 | 0 | 30 | 2975 | 0 | logfile |
✔ | 6T7A | 10391 | 2024-03-15 | 2019-10-21 | 3.7 | 4.20 | 3.60 | 3.7 | 0.006 | 0.87 | 0.0 | 0.05 | 26.13 | 0.01 | 0.733 | 6.61 | 0.00 | 1.8 | 98.1 | 0.1 | -3.03 | 0.85 | 0.81 | 1.66 | 3.7 | 0.005 | 0.77 | 0.0 | 0.04 | 26.08 | 0.00 | 2.174 | 15.69 | 4.67 | 2.5 | 97.5 | 0.0 | 2.64 | 1.73 | 0.86 | 0.85 | 1.20 | 10338 | 847 | 11 | 190 | 0 | 0 | 0 | logfile |
✔ | 8TVX | 41654 | 2024-03-11 | 2023-08-18 | 3.7 | 4.46 | 3.75 | 4.0 | 0.004 | 0.60 | 0.0 | 0.04 | 13.60 | 0.01 | 0.747 | 10.82 | 0.00 | 4.1 | 95.8 | 0.1 | -0.36 | 0.86 | 0.79 | 1.88 | 4.0 | 0.004 | 0.62 | 0.0 | 0.04 | 15.32 | 0.00 | 1.894 | 14.69 | 0.96 | 6.0 | 93.9 | 0.1 | -0.07 | 1.75 | 0.86 | 0.79 | 1.68 | 59056 | 3748 | 21 | 56 | 9 | 0 | 28608 | logfile |
✔ | 8JoU | 36462 | 2024-03-12 | 2023-06-08 | 4.1 | 6.13 | 3.95 | 3.9 | 0.004 | 0.83 | 0.0 | 0.05 | 12.09 | 0.01 | 0.759 | 16.82 | 0.49 | 7.7 | 90.4 | 1.9 | -1.54 | 0.17 | 0.37 | — | 3.1 | 0.003 | 0.69 | 0.0 | 0.04 | 11.93 | 0.00 | 2.055 | 23.73 | 0.08 | 8.5 | 89.8 | 1.7 | -1.53 | 1.41 | 0.23 | 0.86 | — | 62425 | 8135 | 70 | 0 | 590 | 0 | 0 | logfile |
✔ | 6G4W | 4349 | 2024-03-25 | 2018-03-28 | 4.5 | 5.22 | — | 4.4 | 0.006 | 1.11 | 2.0 | 0.07 | 23.58 | 0.01 | 0.760 | 5.05 | 0.00 | 8.2 | 91.5 | 0.3 | -3.51 | 0.65 | 0.51 | — | 4.3 | 0.002 | 0.57 | 0.0 | 0.03 | 24.29 | 0.00 | 2.097 | 6.33 | 0.00 | 6.9 | 93.0 | 0.0 | 0.20 | 2.48 | 0.87 | 0.63 | — | 45223 | 4589 | 31 | 1563 | 768 | 0 | 0 | logfile |
✔ | 6Y50 | 10688 | 2024-03-16 | 2020-02-24 | 4.1 | 4.22 | — | 4.0 | 0.003 | 0.52 | 0.0 | 0.04 | 11.03 | 0.00 | 0.761 | 13.95 | 0.00 | 5.9 | 93.9 | 0.2 | -3.48 | 0.68 | 0.68 | — | 4.0 | 0.003 | 0.63 | 0.0 | 0.04 | 12.34 | 0.00 | 2.049 | 7.08 | 0.00 | 9.7 | 90.2 | 0.1 | -1.33 | 0.55 | 0.72 | 0.73 | — | 14916 | 2537 | 10 | 50 | 3 | 0 | 0 | logfile |
✔ | 6N2Y | 9333 | 2024-03-23 | 2018-11-14 | 3.0 | 3.23 | 2.99 | 3.2 | 0.009 | 1.19 | 14.0 | 0.07 | 10.71 | 0.01 | 0.765 | 8.98 | 0.40 | 3.4 | 96.5 | 0.1 | -2.50 | 0.62 | 0.74 | 4.06 | 3.2 | 0.005 | 0.71 | 0.0 | 0.05 | 14.99 | 0.00 | 1.913 | 11.18 | 2.83 | 3.8 | 96.2 | 0.0 | 0.52 | 1.20 | 0.68 | 0.84 | 3.63 | 35043 | 4696 | 27 | 0 | 26 | 0 | 0 | logfile |
✔ | 8FoY | 29355 | 2024-03-18 | 2023-01-03 | 2.9 | 3.20 | 2.93 | 3.2 | 0.009 | 0.80 | 0.0 | 0.05 | 12.11 | 0.00 | 0.765 | 17.48 | 0.00 | 9.0 | 90.8 | 0.2 | -2.06 | 0.55 | 0.87 | 4.32 | 3.2 | 0.003 | 0.57 | 0.0 | 0.04 | 15.28 | 0.00 | 2.106 | 9.37 | 2.52 | 6.1 | 93.9 | 0.0 | 0.17 | 1.03 | 0.55 | 0.90 | 4.07 | 90072 | 12000 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ASK | 11895 | 2024-03-15 | 2020-10-27 | 4.3 | 4.39 | — | 4.3 | 0.028 | 2.99 | 47.0 | 0.22 | 18.83 | 0.02 | 0.766 | 14.21 | 2.58 | 16.8 | 73.5 | 9.7 | -6.06 | 0.17 | 0.51 | — | 4.3 | 0.015 | 1.13 | 2.0 | 0.05 | 15.40 | 0.01 | 2.076 | 16.90 | 0.00 | 18.4 | 80.1 | 1.5 | -3.44 | 1.30 | 0.18 | 0.61 | — | 12285 | 1523 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 8G16 | 29663 | 2024-03-14 | 2023-02-01 | 2.07 | 2.69 | 2.04 | 2.3 | 0.004 | 0.79 | 0.0 | 0.05 | 16.16 | 0.01 | 0.766 | 4.86 | 1.21 | 4.1 | 95.9 | 0.0 | -1.24 | 0.88 | 0.91 | 5.21 | 2.4 | 0.003 | 0.55 | 0.0 | 0.04 | 16.09 | 0.01 | 2.077 | 9.46 | 1.21 | 3.5 | 96.5 | 0.0 | 0.76 | 1.23 | 0.88 | 0.91 | 5.75 | 10108 | 1336 | 4 | 0 | 0 | 0 | 4 | logfile |
✔ | 7DX4 | 30895 | 2024-03-14 | 2021-01-18 | 3.6 | 3.96 | — | 3.8 | 0.007 | 1.00 | 0.0 | 0.06 | 11.25 | 0.01 | 0.766 | 7.28 | 0.23 | 6.0 | 93.7 | 0.3 | -4.20 | 0.71 | 0.79 | 3.35 | 3.8 | 0.003 | 0.76 | 0.0 | 0.04 | 14.28 | 0.00 | 2.137 | 13.80 | 1.25 | 4.0 | 96.0 | 0.0 | 0.13 | 1.34 | 0.71 | 0.79 | 2.75 | 8234 | 1027 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 6EXN | 3979 | 2024-03-17 | 2017-11-08 | 3.7 | 3.81 | — | 3.7 | 0.008 | 1.23 | 41.0 | 0.10 | 16.23 | 0.01 | 0.767 | 12.57 | 1.33 | 6.3 | 93.2 | 0.5 | -2.85 | 0.56 | 0.68 | 1.92 | 3.7 | 0.003 | 0.69 | 0.0 | 0.04 | 18.37 | 0.00 | 1.946 | 16.68 | 3.36 | 5.4 | 94.5 | 0.1 | 0.26 | 1.84 | 0.59 | 0.73 | 1.58 | 80677 | 9374 | 53 | 480 | 105 | 0 | 0 | logfile |
✔ | 7QG8 | 13952 | 2024-03-25 | 2021-12-07 | 3.97 | 7.71 | — | 4.0 | 0.016 | 1.62 | 61.0 | 0.11 | 22.93 | 0.01 | 0.770 | 4.86 | 1.61 | 8.6 | 90.4 | 1.0 | -3.97 | 0.64 | 0.40 | 0.16 | 4.0 | 0.003 | 0.74 | 0.0 | 0.04 | 24.56 | 0.01 | 1.902 | 35.77 | 2.68 | 10.2 | 89.7 | 0.1 | -2.28 | 3.35 | 0.84 | 0.76 | -0.02 | 147108 | 5936 | 58 | 4695 | 3 | 9 | 0 | logfile |
✔ | 7QGN | 13956 | 2024-03-25 | 2021-12-09 | 3.37 | 5.04 | — | 3.4 | 0.016 | 1.62 | 61.0 | 0.11 | 22.93 | 0.01 | 0.771 | 4.90 | 1.61 | 8.6 | 90.4 | 1.0 | -3.93 | 0.63 | 0.45 | 0.27 | 3.4 | 0.003 | 0.67 | 0.0 | 0.04 | 23.40 | 0.00 | 1.924 | 21.93 | 2.68 | 9.5 | 90.4 | 0.1 | -1.76 | 2.74 | 0.78 | 0.77 | 0.48 | 147306 | 5975 | 59 | 4695 | 3 | 9 | 0 | logfile |
✔ | 6XRE | 22294 | 2024-03-15 | 2020-07-12 | 4.6 | 7.52 | — | 4.5 | 0.011 | 1.16 | 1.0 | 0.07 | 10.73 | 0.01 | 0.771 | 5.15 | 0.24 | 7.9 | 91.5 | 0.6 | -3.72 | 0.62 | 0.29 | — | 4.5 | 0.003 | 0.69 | 0.0 | 0.04 | 12.04 | 0.00 | 1.856 | 15.39 | 0.00 | 13.0 | 87.0 | 0.0 | -2.87 | 0.92 | 0.85 | 0.65 | — | 68542 | 4289 | 18 | 0 | 9 | 0 | 34248 | logfile |