Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7URi	26713	2023-04-19	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	25.77	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.008	1.44	0.0	0.07	23.84	0.01	2.072	23.68	0.00	0.0	0.0	0.0	—	2.06	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	7URM	26714	2023-04-19	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	23.67	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.16	0.0	0.05	22.87	0.01	1.983	29.94	0.00	0.0	0.0	0.0	—	1.70	0.15	0.54	—	1905	0	1	90	0	0	0	logfile
✔	7V22	31634	2023-04-19	2021-08-07	3.38	3.61	—	3.6	0.003	0.66	0.0	0.04	14.10	0.00	2.236	8.81	0.46	12.1	87.5	0.4	-2.81	0.53	0.77	4.24	3.6	0.004	0.70	0.0	0.05	16.03	0.00	2.170	11.14	0.46	13.4	86.2	0.4	-2.46	0.55	0.53	0.80	3.78	1958	240	1	0	0	0	0	logfile
✔	7SRQ	25401	2023-04-20	2021-11-08	2.7	2.17	—	1.9	0.008	0.80	0.0	0.05	13.54	0.01	2.296	8.67	1.50	2.8	97.2	0.0	0.29	0.70	0.72	4.55	2.7	0.004	0.76	0.0	0.04	15.44	0.00	2.264	8.93	3.50	3.2	96.8	0.0	0.20	0.48	0.72	0.77	3.78	1960	254	1	0	2	0	0	logfile
✔	7JZU	22574	2023-04-19	2020-09-02	3.1	3.26	3.10	3.3	0.015	1.34	0.0	0.08	9.69	0.01	2.509	0.78	0.00	3.3	96.7	0.0	0.23	0.69	0.76	4.15	3.3	0.003	0.63	0.0	0.04	15.06	0.00	2.208	5.19	0.98	3.3	96.7	0.0	0.42	1.61	0.69	0.80	3.94	1987	248	3	0	3	0	0	logfile
✔	7WX4	32876	2023-04-19	2022-02-14	3.4	3.64	2.77	3.7	0.006	0.59	0.0	0.04	16.46	0.00	2.219	8.20	6.39	7.2	92.8	0.0	-3.40	0.43	0.82	0.72	3.7	0.003	0.57	0.0	0.04	17.71	0.00	2.120	5.71	0.00	6.0	94.0	0.0	-0.14	0.45	0.43	0.82	0.59	1992	260	2	0	0	0	0	logfile
✔	6RJU	4906	2023-04-19	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	9.8	0.003	0.63	0.0	0.03	15.97	0.00	2.424	6.03	0.00	6.2	93.8	0.0	-0.13	1.31	0.27	0.05	0.48	1992	131	1	0	0	0	997	logfile
✔	7JZM	22533	2023-04-19	2020-09-02	3.5	3.74	3.50	3.7	0.015	1.38	0.0	0.08	9.29	0.01	2.420	1.01	0.00	2.0	98.0	0.0	0.75	0.75	0.78	4.01	3.7	0.003	0.72	0.0	0.04	14.65	0.00	2.187	9.13	0.00	3.9	96.1	0.0	0.33	1.25	0.76	0.80	3.36	2033	258	3	0	3	0	0	logfile
✔	6ZS5	11388	2023-04-19	2020-07-15	3.5	4.02	3.66	3.8	0.008	1.09	1.0	0.07	13.95	0.01	2.202	4.52	0.00	4.7	95.3	0.0	-2.98	0.67	0.80	2.81	3.9	0.003	0.75	0.0	0.04	15.47	0.00	2.220	9.30	1.86	3.6	96.4	0.0	-1.97	2.35	0.67	0.80	2.50	2036	257	4	0	7	0	0	logfile
✔	6YJ5	10816	2023-04-19	2020-04-02	3.5	2.92	3.56	3.3	0.007	0.87	0.0	0.05	13.19	0.01	2.183	4.22	0.00	12.5	87.5	0.0	-5.13	0.42	0.62	3.01	3.3	0.007	0.81	0.0	0.05	15.31	0.01	2.257	11.88	0.61	12.2	87.8	0.0	-2.14	0.81	0.52	0.74	3.59	2061	306	1	0	0	0	0	logfile
✔	8DM2	27524	2023-04-19	2022-07-08	2.91	3.71	2.85	3.6	0.007	1.02	0.0	0.07	12.99	0.01	2.362	4.12	0.44	2.5	97.5	0.0	-0.51	0.57	0.66	2.14	3.6	0.003	0.70	0.0	0.05	16.70	0.00	2.278	8.96	1.78	5.0	95.0	0.0	-0.88	1.72	0.61	0.74	3.47	2104	249	3	0	6	0	0	logfile
✔	7ZSD	14930	2023-04-19	2022-05-06	3.29	3.62	3.56	3.6	0.003	0.60	0.0	0.05	14.29	0.00	2.226	9.82	0.00	7.0	93.0	0.0	-0.09	0.38	0.74	2.01	3.6	0.003	0.66	0.0	0.05	14.79	0.00	2.257	12.46	0.90	7.0	93.0	0.0	-0.57	0.39	0.39	0.78	1.13	2120	261	3	0	2	0	0	logfile
✔	7UHB	26511	2023-04-19	2022-03-26	3.0	3.17	2.97	3.2	0.011	1.36	3.0	0.12	9.92	0.00	2.562	5.08	1.42	3.0	96.6	0.4	-0.52	0.52	0.54	-0.09	3.2	0.003	0.61	0.0	0.04	16.83	0.00	2.223	8.94	2.84	3.0	97.0	0.0	0.69	2.47	0.69	0.83	3.49	2141	270	3	0	3	0	0	logfile
✔	7Y14	33556	2023-04-19	2022-06-06	3.2	3.29	3.09	3.3	0.004	0.66	1.0	0.04	13.60	0.01	2.312	8.75	0.00	4.2	95.8	0.0	2.46	0.51	0.76	2.28	3.3	0.003	0.57	1.0	0.04	15.29	0.00	2.300	9.21	0.87	4.6	95.4	0.0	3.17	1.20	0.50	0.78	2.07	2145	265	1	0	4	0	0	logfile
✔	7JV2	22491	2023-04-19	2020-08-20	3.5	3.49	3.41	3.7	0.015	1.39	0.0	0.08	11.43	0.01	2.587	0.00	1.32	3.6	96.4	0.0	0.82	0.69	0.74	3.48	3.7	0.004	0.72	0.0	0.04	14.90	0.00	2.223	14.03	0.44	5.5	94.5	0.0	-0.83	1.27	0.71	0.77	3.76	2151	282	3	0	0	0	0	logfile
✔	7XiZ	33213	2023-04-19	2022-04-14	3.74	3.27	3.81	3.1	0.013	1.11	0.0	0.06	17.48	0.01	2.386	4.94	0.00	12.8	86.4	0.8	-3.37	0.35	0.71	1.78	3.1	0.004	0.81	0.0	0.05	17.83	0.01	2.218	16.22	1.70	16.6	82.6	0.8	-3.61	1.54	0.37	0.74	1.40	2161	267	1	0	2	0	0	logfile
✔	7VV0	32133	2023-04-19	2021-11-04	3.5	3.69	—	3.7	0.010	1.49	1.0	0.09	14.09	0.01	2.007	11.04	2.93	4.5	95.5	0.0	-3.44	0.65	0.80	1.76	3.7	0.002	0.59	0.0	0.04	15.22	0.00	2.238	6.31	0.84	3.0	97.0	0.0	2.30	1.26	0.64	0.80	1.65	2175	268	2	0	1	0	0	logfile
✔	7VV4	32137	2023-04-19	2021-11-04	2.97	3.66	—	3.7	0.007	1.20	2.0	0.09	14.57	0.01	1.600	15.98	3.75	4.2	95.8	0.0	-0.53	0.64	0.78	2.05	3.7	0.003	0.76	0.0	0.04	17.20	0.00	2.114	10.81	2.50	2.3	97.4	0.4	2.12	0.55	0.58	0.76	0.88	2181	269	3	0	1	0	0	logfile
✔	7Y13	33555	2023-04-19	2022-06-06	3.1	3.20	3.10	3.2	0.005	0.68	0.0	0.04	13.19	0.01	2.195	8.24	0.00	6.1	93.9	0.0	1.88	0.59	0.80	3.01	3.2	0.003	0.56	0.0	0.04	15.52	0.00	2.192	8.24	0.43	5.3	94.7	0.0	2.76	0.26	0.54	0.80	2.48	2199	264	1	0	7	2	0	logfile
✔	7B6E	12053	2023-04-19	2020-12-07	4.5	2.79	—	5.1	0.005	1.03	0.0	0.05	15.04	0.01	2.129	36.05	0.00	10.9	89.1	0.0	-3.88	0.62	0.66	—	2.4	0.004	0.99	0.0	0.05	14.87	0.00	2.111	27.61	0.00	11.3	88.7	0.0	-1.65	0.83	0.61	0.67	—	2205	269	1	0	0	0	0	logfile

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