Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7V4C	31707	2023-09-27	2021-08-12	3.3	2.93	—	3.4	0.008	0.75	0.0	0.06	12.47	0.00	2.305	12.50	0.00	20.0	80.0	0.0	-6.54	0.40	0.83	2.37	3.4	0.002	0.61	0.0	0.05	17.20	0.00	2.152	4.55	1.52	6.1	93.9	0.0	-4.30	2.19	0.40	0.82	3.23	1287	186	3	0	0	0	0	logfile
✔	6QJH	4563	2023-09-27	2019-01-24	3.3	3.70	2.77	3.6	0.012	1.21	3.0	0.10	14.39	0.01	2.673	1.49	1.96	7.0	93.0	0.0	-3.22	0.36	0.83	2.97	3.6	0.003	0.65	0.0	0.05	15.68	0.00	2.258	4.48	0.00	2.3	97.7	0.0	-2.63	1.57	0.30	0.77	2.79	1302	177	3	0	0	0	0	logfile
✔	6TGP	10500	2023-09-27	2019-11-17	4.4	4.64	—	4.3	0.013	1.90	1.0	0.13	12.88	0.01	2.228	7.38	2.08	5.2	94.8	0.0	-3.36	0.45	0.85	—	4.1	0.004	0.74	0.0	0.04	12.58	0.00	2.270	18.08	0.00	4.1	95.9	0.0	0.85	1.85	0.44	0.79	—	1344	176	2	0	0	0	0	logfile
✔	6FU8	4319	2023-09-27	2018-02-26	3.2	4.43	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.004	0.85	0.0	0.04	15.02	0.00	2.243	16.86	0.00	11.2	87.5	1.2	-1.85	3.09	0.23	0.62	-0.89	1364	82	1	0	0	0	711	logfile
✔	6X0V	21985	2023-09-27	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.49	0.0	0.04	12.98	0.00	2.224	17.83	0.00	5.0	95.0	0.0	2.29	1.20	0.40	0.76	—	1384	211	4	0	0	0	62	logfile
✔	3JBS	6478	2023-09-27	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.003	0.61	0.0	0.04	18.11	0.00	2.225	5.17	3.95	1.7	98.3	0.0	0.99	1.75	0.21	0.81	3.63	1401	175	1	0	0	0	0	logfile
✔	7VU8	32126	2023-09-27	2021-11-01	3.0	4.24	3.77	4.4	0.009	1.19	0.0	0.07	11.96	0.01	2.308	9.19	4.64	9.5	90.5	0.0	-5.27	0.39	0.75	3.88	4.3	0.002	0.63	0.0	0.04	16.24	0.00	2.357	4.24	5.30	4.8	95.2	0.0	-1.62	1.16	0.39	0.76	3.39	1433	170	1	0	1	0	0	logfile
✔	7W3T	32293	2023-09-27	2021-11-26	3.59	2.49	3.54	2.2	0.004	0.73	0.0	0.05	14.39	0.01	2.259	8.96	0.00	4.6	95.4	0.0	-2.83	0.76	0.75	4.00	2.2	0.003	0.64	0.0	0.05	16.79	0.00	2.191	11.71	0.62	4.6	95.4	0.0	-2.89	0.34	0.77	0.75	3.46	1455	176	3	0	7	0	0	logfile
✔	7TPK	26058	2023-09-27	2022-01-25	3.4	3.41	—	3.4	0.011	1.40	1.0	0.08	9.69	0.01	2.528	2.12	0.00	4.7	95.3	0.0	-0.98	0.60	0.72	4.39	3.4	0.004	0.63	0.0	0.04	15.27	0.00	2.331	4.95	0.00	4.2	95.8	0.0	-1.45	1.26	0.65	0.81	3.26	1484	194	1	0	1	0	0	logfile
✔	6R23	4708	2023-09-27	2019-03-15	4.9	4.57	—	4.6	0.006	1.07	0.0	0.05	16.56	0.01	2.332	7.52	0.00	7.9	92.1	0.0	-4.61	0.60	0.75	—	4.6	0.003	0.61	0.0	0.04	16.41	0.00	2.466	11.77	0.00	9.0	91.0	0.0	-0.07	3.42	0.60	0.74	—	1518	182	2	0	0	0	0	logfile
✔	7ABK	11698	2023-09-27	2020-09-07	3.6	4.10	3.49	3.9	0.004	0.66	0.0	0.04	16.30	0.00	2.315	5.67	1.23	1.5	98.5	0.0	0.91	0.28	0.87	1.10	3.9	0.004	0.67	0.0	0.03	19.79	0.00	2.278	6.30	2.47	2.1	97.9	0.0	4.42	1.32	0.28	0.86	1.35	1574	196	1	0	0	0	0	logfile
✔	6CoZ	7545	2023-09-27	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.85	0.0	0.04	5.41	0.00	2.334	6.19	0.00	9.6	90.4	0.0	-1.73	1.59	0.82	0.77	—	1586	320	2	0	0	0	0	logfile
✔	5M6S	3451	2023-09-27	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.6	0.003	0.63	0.0	0.03	18.81	0.00	1.995	10.68	0.00	6.2	93.8	0.0	2.64	2.46	0.03	0.08	—	1593	98	1	0	0	0	793	logfile
✔	7oG6	12879	2023-09-27	2021-05-06	3.3	3.47	—	2.9	0.008	0.82	0.0	0.04	17.33	0.01	2.325	7.36	6.10	9.6	90.4	0.0	-4.47	0.28	0.82	2.77	2.9	0.003	0.60	0.0	0.04	16.45	0.00	2.215	10.56	0.00	6.6	93.4	0.0	-0.32	0.52	0.27	0.84	3.03	1602	199	2	5	0	0	0	logfile
✔	8oKR	16930	2023-09-27	2023-03-29	2.86	3.36	2.66	3.4	0.007	1.56	0.0	0.09	22.91	0.01	1.489	4.96	0.00	0.0	100.0	0.0	-4.51	0.55	0.67	7.31	3.4	0.191	6.68	64.0	0.43	28.26	0.04	1.558	166.46	10.71	46.7	40.0	13.3	-7.58	2.35	0.64	0.88	1.62	1608	168	24	0	0	0	0	logfile
✔	7V4A	31705	2023-09-27	2021-08-12	3.2	3.19	—	3.3	0.002	0.52	0.0	0.05	14.28	0.00	2.423	8.54	0.00	7.9	92.1	0.0	-5.80	0.42	0.82	3.23	3.2	0.003	0.60	0.0	0.05	16.38	0.00	2.347	6.77	0.61	11.8	88.2	0.0	-3.97	1.70	0.42	0.81	3.13	1653	240	3	0	0	0	0	logfile
✔	8G2V	29682	2023-09-27	2023-02-06	2.715	2.36	2.41	3.0	0.005	0.64	0.0	0.06	16.26	0.00	2.486	8.31	0.00	5.3	94.7	0.0	-3.75	0.45	0.81	7.19	2.8	0.003	0.68	0.0	0.06	17.30	0.00	2.330	18.40	1.67	2.6	97.4	0.0	-3.25	2.56	0.43	0.83	7.86	1660	210	10	0	0	0	0	logfile
✔	7USB	26731	2023-09-27	2022-04-23	3.1	3.28	3.18	3.3	0.013	1.72	0.0	0.11	10.69	0.01	2.590	1.61	1.39	5.5	94.5	0.0	-0.28	0.59	0.76	5.40	3.3	0.005	0.80	0.0	0.05	13.73	0.00	2.361	5.78	0.69	5.5	94.5	0.0	-1.74	0.61	0.61	0.84	5.05	1661	213	3	0	5	0	0	logfile
✔	7QL1	14060	2023-09-27	2021-12-19	3.34	3.41	3.13	3.4	0.011	2.01	0.0	0.10	11.06	0.01	2.654	0.29	0.00	7.5	92.5	0.0	-3.09	0.42	0.83	4.57	3.4	0.007	0.85	0.0	0.05	15.42	0.00	2.104	12.32	0.00	4.2	95.8	0.0	-2.34	1.74	0.39	0.81	4.21	1671	219	3	0	0	0	0	logfile
✔	7M61	23686	2023-09-27	2021-03-25	3.8	3.83	—	4.1	0.005	1.01	0.0	0.08	12.79	0.00	2.218	22.02	0.00	14.3	85.7	0.0	-4.63	0.49	0.73	2.45	3.9	0.004	0.80	0.0	0.05	14.85	0.00	2.106	21.09	0.00	14.3	85.7	0.0	-4.66	0.84	0.48	0.75	2.97	1690	230	10	0	10	0	0	logfile

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