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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7PTQ | 13633 | 2023-08-15 | 2021-09-27 | 4.08 | 6.47 | 4.22 | 4.0 | 0.005 | 0.78 | 0.0 | 0.04 | 15.27 | 0.00 | 1.983 | 0.92 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.91 | 0.80 | — | 4.0 | 0.006 | 0.67 | 0.0 | 0.04 | 19.44 | 0.00 | 1.852 | 43.48 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.75 | 0.96 | 0.94 | — | 17434 | 0 | 1 | 544 | 0 | 0 | 5847 | logfile |
✔ | 6XMP | 22260 | 2023-08-10 | 2020-06-30 | 3.5 | 4.29 | 3.63 | 4.0 | 0.007 | 0.78 | 0.0 | 0.04 | 13.27 | 0.00 | 2.192 | 6.56 | 0.00 | 2.9 | 97.1 | 0.0 | -1.66 | 0.72 | 0.84 | 1.55 | 4.0 | 0.003 | 0.53 | 0.0 | 0.04 | 14.26 | 0.00 | 2.173 | 6.27 | 0.00 | 3.2 | 96.8 | 0.0 | 1.22 | 0.33 | 0.71 | 0.85 | 1.45 | 8545 | 1086 | 1 | 0 | 12 | 0 | 0 | logfile |
✔ | 6XMQ | 22261 | 2023-08-10 | 2020-06-30 | 3.7 | 4.26 | 3.79 | 4.0 | 0.006 | 0.66 | 0.0 | 0.04 | 12.80 | 0.00 | 1.660 | 6.11 | 0.00 | 3.7 | 96.3 | 0.0 | -1.63 | 0.72 | 0.85 | 1.50 | 4.0 | 0.004 | 0.60 | 0.0 | 0.04 | 14.86 | 0.00 | 1.920 | 7.07 | 0.22 | 3.9 | 96.1 | 0.0 | 0.66 | 1.28 | 0.72 | 0.86 | 1.32 | 8362 | 1085 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7WQX | 32715 | 2023-08-09 | 2022-01-26 | 2.7 | 2.26 | — | 3.2 | 0.003 | 0.53 | 0.0 | 0.04 | 8.53 | 0.00 | 2.181 | 9.03 | 2.56 | 6.0 | 94.0 | 0.0 | -3.61 | 0.73 | 0.65 | 2.93 | 3.2 | 0.003 | 0.77 | 0.0 | 0.05 | 14.82 | 0.00 | 2.167 | 15.01 | 2.56 | 8.6 | 91.4 | 0.0 | -1.89 | 1.35 | 0.76 | 0.69 | 2.18 | 4022 | 501 | 1 | 0 | 9 | 0 | 0 | logfile |
✔ | 7XSN | 33428 | 2023-08-10 | 2022-05-14 | 3.01 | 4.02 | 3.04 | 3.2 | 0.013 | 1.06 | 0.0 | 0.05 | 16.67 | 0.01 | 2.252 | 5.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.91 | 0.84 | — | 3.2 | 0.006 | 0.61 | 0.0 | 0.03 | 16.36 | 0.00 | 2.111 | 20.82 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.30 | 0.92 | 0.87 | — | 8279 | 0 | 1 | 387 | 0 | 0 | 0 | logfile |
✔ | 7VLT | 32026 | 2023-08-11 | 2021-10-05 | 3.1 | 3.37 | 3.11 | 3.4 | 0.004 | 0.60 | 0.0 | 0.04 | 12.71 | 0.00 | 1.963 | 3.24 | 2.19 | 1.9 | 98.1 | 0.0 | 0.12 | 0.67 | 0.83 | 2.64 | 3.4 | 0.003 | 0.55 | 0.0 | 0.04 | 15.16 | 0.00 | 2.010 | 8.03 | 0.00 | 1.3 | 98.7 | 0.0 | 2.53 | 1.87 | 0.66 | 0.83 | 2.02 | 9024 | 1145 | 1 | 0 | 6 | 0 | 0 | logfile |
✔ | 7XSM | 33427 | 2023-08-12 | 2022-05-14 | 4.01 | 4.70 | 4.03 | 4.0 | 0.002 | 0.47 | 0.0 | 0.03 | 15.76 | 0.00 | 1.969 | 7.06 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.90 | 0.75 | — | 4.0 | 0.007 | 0.76 | 0.0 | 0.04 | 19.93 | 0.01 | 1.773 | 49.65 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.70 | 0.92 | 0.82 | — | 12464 | 0 | 1 | 388 | 0 | 0 | 4165 | logfile |
✔ | 7ZJ5 | 14741 | 2023-08-12 | 2022-04-08 | 4.55 | 5.91 | 5.09 | 4.4 | 0.002 | 0.65 | 0.0 | 0.04 | 14.68 | 0.00 | 2.256 | 0.50 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.92 | 0.85 | — | 4.5 | 0.008 | 0.89 | 0.0 | 0.04 | 18.29 | 0.01 | 1.666 | 78.91 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.95 | 0.94 | 0.90 | — | 12014 | 0 | 1 | 374 | 1 | 0 | 4030 | logfile |
✔ | 8C4S | 16427 | 2023-08-11 | 2023-01-04 | 3.27 | 3.46 | 3.25 | 3.3 | 0.005 | 0.85 | 6.0 | 0.05 | 15.99 | 0.00 | 2.258 | 8.25 | 1.24 | 2.9 | 96.9 | 0.2 | 1.15 | 0.82 | 0.85 | 2.80 | 3.3 | 0.004 | 0.56 | 0.0 | 0.04 | 16.06 | 0.00 | 2.123 | 8.40 | 0.00 | 2.8 | 97.0 | 0.2 | 1.69 | 0.36 | 0.83 | 0.86 | 3.05 | 10292 | 1277 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7S8U | 24922 | 2023-08-09 | 2021-09-19 | 3.7 | 3.97 | — | 3.9 | 0.008 | 1.19 | 1.0 | 0.07 | 14.00 | 0.01 | 2.243 | 13.10 | 4.56 | 8.3 | 90.5 | 1.2 | -1.14 | 0.48 | 0.59 | 0.59 | 3.9 | 0.004 | 0.86 | 0.0 | 0.05 | 16.32 | 0.01 | 2.069 | 18.36 | 0.88 | 9.6 | 89.9 | 0.5 | -0.50 | 1.41 | 0.51 | 0.62 | 0.54 | 5210 | 667 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6L42 | 0828 | 2023-08-13 | 2019-10-15 | 3.4 | 3.83 | — | 3.7 | 0.013 | 3.32 | 109.0 | 0.17 | 16.55 | 0.02 | 1.223 | 41.56 | 6.61 | 11.4 | 86.6 | 2.0 | -5.16 | 0.79 | 0.75 | 1.25 | 3.7 | 0.004 | 0.88 | 0.0 | 0.05 | 16.72 | 0.01 | 2.057 | 13.83 | 0.43 | 11.2 | 88.5 | 0.3 | -2.67 | 0.84 | 0.82 | 0.84 | 1.45 | 14827 | 1864 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 6XMT | 22263 | 2023-08-10 | 2020-06-30 | 3.3 | 3.96 | 3.42 | 3.7 | 0.004 | 0.61 | 0.0 | 0.04 | 12.44 | 0.00 | 1.814 | 7.30 | 0.00 | 4.5 | 95.5 | 0.0 | -2.38 | 0.72 | 0.82 | 2.61 | 3.8 | 0.002 | 0.54 | 0.0 | 0.04 | 14.21 | 0.00 | 2.054 | 5.85 | 0.11 | 3.4 | 96.6 | 0.0 | 0.58 | 0.42 | 0.72 | 0.85 | 1.95 | 8324 | 1092 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7VLR | 32024 | 2023-08-11 | 2021-10-05 | 3.4 | 3.65 | 3.41 | 3.6 | 0.004 | 0.61 | 0.0 | 0.04 | 12.64 | 0.00 | 2.052 | 4.29 | 0.94 | 1.6 | 98.4 | 0.0 | 1.47 | 0.70 | 0.84 | 1.66 | 3.6 | 0.003 | 0.55 | 0.0 | 0.04 | 15.43 | 0.00 | 2.086 | 7.32 | 0.10 | 1.5 | 98.5 | 0.0 | 3.12 | 1.54 | 0.65 | 0.83 | 1.35 | 9003 | 1145 | 1 | 0 | 5 | 0 | 0 | logfile |
✔ | 7VLU | 32027 | 2023-08-11 | 2021-10-05 | 3.3 | 3.71 | 3.36 | 3.6 | 0.004 | 0.63 | 0.0 | 0.04 | 12.85 | 0.00 | 1.978 | 3.76 | 1.96 | 2.5 | 97.5 | 0.0 | -0.35 | 0.71 | 0.84 | 2.31 | 3.6 | 0.003 | 0.58 | 0.0 | 0.04 | 14.68 | 0.00 | 1.962 | 6.31 | 0.10 | 1.6 | 98.4 | 0.0 | 2.48 | 1.91 | 0.61 | 0.79 | 1.51 | 9110 | 1159 | 1 | 0 | 6 | 0 | 0 | logfile |
✔ | 7VLS | 32025 | 2023-08-11 | 2021-10-05 | 3.3 | 3.54 | 3.30 | 3.5 | 0.004 | 0.62 | 0.0 | 0.04 | 12.94 | 0.00 | 1.926 | 2.53 | 1.46 | 2.6 | 97.4 | 0.0 | -0.24 | 0.69 | 0.84 | 2.33 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 15.83 | 0.00 | 1.966 | 6.39 | 0.00 | 1.6 | 98.4 | 0.0 | 2.51 | 1.51 | 0.64 | 0.82 | 1.72 | 9003 | 1141 | 1 | 0 | 6 | 0 | 0 | logfile |
✔ | 7XSK | 33425 | 2023-08-12 | 2022-05-14 | 3.53 | 4.49 | 3.42 | 3.4 | 0.001 | 0.44 | 0.0 | 0.02 | 15.94 | 0.00 | 1.970 | 6.98 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.90 | 0.76 | — | 3.4 | 0.007 | 0.68 | 0.0 | 0.04 | 18.66 | 0.01 | 1.750 | 33.29 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.90 | 0.91 | 0.83 | — | 12467 | 0 | 1 | 388 | 0 | 0 | 4168 | logfile |
✘ | 7RAV | 24387 | 2023-08-09 | 2021-07-02 | 3.3 | 2.69 | 3.21 | 2.4 | 0.004 | 0.93 | 0.0 | 0.05 | 15.84 | 0.01 | 2.224 | 16.68 | 1.17 | 16.7 | 82.9 | 0.4 | -3.36 | 0.72 | 0.71 | 2.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6215 | 773 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7XSL | 33426 | 2023-08-12 | 2022-05-14 | 3.84 | 4.65 | 3.83 | 3.7 | 0.002 | 0.47 | 0.0 | 0.02 | 16.20 | 0.00 | 1.935 | 8.02 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.91 | 0.77 | — | 3.8 | 0.006 | 0.70 | 0.0 | 0.04 | 18.31 | 0.01 | 1.810 | 33.53 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.02 | 0.92 | 0.83 | — | 12467 | 0 | 1 | 388 | 0 | 0 | 4168 | logfile |
✔ | 7o3D | 12704 | 2023-08-12 | 2021-04-01 | 3.71 | 4.15 | 3.79 | 4.0 | 0.003 | 0.77 | 0.0 | 0.05 | 13.17 | 0.01 | 2.146 | 6.21 | 0.00 | 4.2 | 95.8 | 0.0 | -0.61 | 0.76 | 0.72 | 1.16 | 3.9 | 0.002 | 0.55 | 0.0 | 0.04 | 15.37 | 0.00 | 2.019 | 8.57 | 0.31 | 4.9 | 95.1 | 0.0 | 0.18 | 0.47 | 0.76 | 0.73 | 1.29 | 11458 | 709 | 1 | 0 | 0 | 0 | 5694 | logfile |
✔ | 7o6B | 12737 | 2023-08-13 | 2021-04-09 | 3.88 | 4.21 | 4.15 | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 11.54 | 0.01 | 2.128 | 6.00 | 0.38 | 4.3 | 95.7 | 0.0 | -0.87 | 0.75 | 0.67 | 0.37 | 3.8 | 0.002 | 0.56 | 0.0 | 0.04 | 14.10 | 0.00 | 2.026 | 9.46 | 0.13 | 3.6 | 96.4 | 0.0 | 0.66 | 1.15 | 0.76 | 0.69 | 0.37 | 14200 | 879 | 1 | 0 | 0 | 0 | 7040 | logfile |