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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7WHM | 32504 | 2024-03-14 | 2021-12-31 | 2.7 | 2.86 | — | 2.8 | 0.006 | 0.64 | 0.0 | 0.05 | 13.85 | 0.00 | 2.155 | 6.30 | 0.00 | 3.1 | 96.9 | 0.0 | 0.15 | 0.43 | 0.87 | 4.68 | 2.8 | 0.003 | 0.53 | 0.0 | 0.04 | 16.04 | 0.00 | 2.243 | 5.62 | 2.23 | 2.4 | 97.6 | 0.0 | 1.34 | 1.11 | 0.41 | 0.85 | 3.80 | 9650 | 1214 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XPZ | 33386 | 2024-03-10 | 2022-05-06 | 3.4 | 3.31 | 3.34 | 3.6 | 0.005 | 0.73 | 0.0 | 0.05 | 12.26 | 0.01 | 2.311 | 6.57 | 0.58 | 5.5 | 94.5 | 0.0 | -6.77 | 0.49 | 0.79 | 3.43 | 3.6 | 0.003 | 0.64 | 0.0 | 0.04 | 14.24 | 0.00 | 2.187 | 7.80 | 2.88 | 4.0 | 96.0 | 0.0 | -0.85 | 1.15 | 0.45 | 0.78 | 2.16 | 3227 | 402 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7M5X | 23684 | 2024-03-17 | 2021-03-25 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15476 | 1000 | 1 | 0 | 25 | 11 | 7545 | logfile |
✔ | 6KZP | 0792 | 2024-03-11 | 2019-09-25 | 3.1 | 2.67 | — | 3.0 | 0.013 | 1.45 | 1.0 | 0.08 | 16.07 | 0.01 | 2.390 | 10.39 | 2.44 | 3.3 | 96.4 | 0.3 | -4.53 | 0.59 | 0.81 | 3.72 | 3.1 | 0.003 | 0.65 | 0.0 | 0.04 | 16.39 | 0.00 | 2.343 | 5.97 | 3.22 | 2.9 | 97.0 | 0.1 | 1.46 | 0.66 | 0.59 | 0.83 | 2.30 | 8557 | 1014 | 1 | 0 | 18 | 0 | 0 | logfile |
✔ | 6UY0 | 20945 | 2024-03-14 | 2019-11-09 | 3.23 | 3.39 | — | 3.4 | 0.014 | 1.85 | 0.0 | 0.08 | 13.73 | 0.00 | 1.861 | 1.22 | 0.00 | 4.3 | 95.7 | 0.0 | -2.56 | 0.47 | 0.67 | 1.98 | 3.4 | 0.003 | 0.55 | 0.0 | 0.04 | 15.69 | 0.00 | 2.011 | 5.15 | 2.47 | 2.1 | 97.9 | 0.0 | 1.41 | 1.53 | 0.64 | 0.83 | 1.44 | 9684 | 1210 | 1 | 0 | 7 | 0 | 0 | logfile |
✔ | 8GoE | 34176 | 2024-03-10 | 2022-08-24 | 3.0 | 3.01 | 3.02 | 3.1 | 0.006 | 0.76 | 1.0 | 0.05 | 13.25 | 0.01 | 2.273 | 6.40 | 0.57 | 2.0 | 98.0 | 0.0 | -6.19 | 0.46 | 0.82 | 4.16 | 3.1 | 0.003 | 0.62 | 1.0 | 0.04 | 14.17 | 0.00 | 2.274 | 7.29 | 0.57 | 2.2 | 97.8 | 0.0 | 1.17 | 0.42 | 0.46 | 0.83 | 2.94 | 3323 | 407 | 1 | 0 | 1 | 0 | 0 | logfile |
✘ | 7M5Y | 23685 | 2024-03-17 | 2021-03-25 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15447 | 1000 | 1 | 0 | 24 | 8 | 7534 | logfile |
✘ | 7M5V | 23683 | 2024-03-17 | 2021-03-24 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16295 | 1046 | 1 | 0 | 24 | 6 | 7985 | logfile |
✔ | 7XiZ | 33213 | 2024-03-10 | 2022-04-14 | 3.74 | 3.27 | 3.81 | 3.1 | 0.013 | 1.11 | 0.0 | 0.06 | 19.02 | 0.01 | 2.386 | 4.94 | 0.00 | 12.8 | 86.4 | 0.8 | -3.37 | 0.35 | 0.71 | 1.78 | 3.1 | 0.004 | 0.83 | 0.0 | 0.05 | 18.98 | 0.01 | 2.234 | 13.17 | 5.96 | 15.8 | 83.4 | 0.8 | -3.73 | 1.54 | 0.37 | 0.73 | 1.80 | 2161 | 267 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7T32 | 25648 | 2024-03-10 | 2021-12-06 | 3.4 | 3.96 | — | 3.9 | 0.006 | 0.77 | 0.0 | 0.04 | 14.07 | 0.01 | 2.313 | 6.67 | 0.00 | 5.1 | 94.6 | 0.3 | 1.86 | 0.44 | 0.76 | 0.75 | 3.9 | 0.003 | 0.67 | 0.0 | 0.04 | 16.13 | 0.00 | 2.231 | 8.44 | 3.17 | 4.9 | 94.9 | 0.3 | 2.40 | 0.93 | 0.45 | 0.80 | 0.68 | 2861 | 375 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 5UAR | 8461 | 2024-03-14 | 2016-12-19 | 3.73 | 4.36 | — | 4.4 | 0.008 | 1.18 | 0.0 | 0.06 | 13.30 | 0.00 | 2.393 | 0.26 | 1.06 | 7.4 | 92.5 | 0.1 | -3.58 | 0.58 | 0.77 | 1.39 | 4.3 | 0.003 | 0.69 | 0.0 | 0.04 | 15.99 | 0.00 | 2.139 | 10.58 | 3.48 | 4.4 | 95.6 | 0.0 | -0.07 | 1.49 | 0.61 | 0.80 | 0.95 | 9489 | 1184 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7RPi | 24615 | 2024-03-11 | 2021-08-03 | 2.5 | 2.74 | 2.62 | 2.8 | 0.016 | 1.82 | 2.0 | 0.11 | 14.73 | 0.01 | 2.170 | 0.93 | 0.12 | 2.0 | 98.0 | 0.0 | -0.69 | 0.50 | 0.73 | 4.35 | 2.8 | 0.002 | 0.60 | 0.0 | 0.04 | 13.38 | 0.00 | 2.216 | 6.08 | 1.35 | 1.4 | 98.6 | 0.0 | 2.17 | 0.53 | 0.60 | 0.82 | 2.91 | 8526 | 926 | 1 | 0 | 35 | 43 | 0 | logfile |
✔ | 7RPH | 24614 | 2024-03-11 | 2021-08-03 | 2.5 | 2.68 | 2.59 | 2.7 | 0.017 | 1.89 | 4.0 | 0.12 | 15.18 | 0.01 | 1.952 | 2.03 | 0.61 | 2.1 | 97.9 | 0.0 | -0.70 | 0.53 | 0.76 | 4.93 | 2.7 | 0.002 | 0.61 | 0.0 | 0.04 | 14.22 | 0.00 | 2.203 | 5.67 | 2.21 | 1.5 | 98.5 | 0.0 | 2.00 | 1.28 | 0.66 | 0.85 | 2.92 | 8573 | 926 | 1 | 0 | 36 | 86 | 0 | logfile |
✔ | 7V0Q | 26948 | 2024-03-10 | 2022-05-10 | 2.5 | 2.22 | 2.45 | 2.2 | 0.004 | 0.61 | 0.0 | 0.04 | 18.36 | 0.00 | 2.227 | 3.48 | 2.15 | 1.1 | 98.9 | 0.0 | 1.64 | 0.60 | 0.89 | 5.35 | 2.2 | 0.004 | 1.16 | 1.0 | 0.05 | 18.59 | 0.00 | 2.160 | 4.54 | 3.40 | 1.1 | 98.9 | 0.0 | 1.65 | 0.48 | 0.59 | 0.89 | 5.58 | 5301 | 658 | 1 | 0 | 0 | 127 | 0 | logfile |
✔ | 7QFQ | 13947 | 2024-03-15 | 2021-12-06 | 3.6 | 3.83 | 3.58 | 4.0 | 0.002 | 0.54 | 0.0 | 0.04 | 12.93 | 0.00 | 2.177 | 8.31 | 0.00 | 5.4 | 94.6 | 0.0 | -0.70 | 0.65 | 0.70 | 1.50 | 4.0 | 0.002 | 0.50 | 0.0 | 0.04 | 14.91 | 0.00 | 2.191 | 7.22 | 2.02 | 5.0 | 95.0 | 0.0 | -0.54 | 0.36 | 0.66 | 0.71 | 1.58 | 10659 | 1291 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JBS | 6478 | 2024-03-10 | 2015-10-13 | 2.9 | 3.04 | — | 3.2 | 0.010 | 1.32 | 0.0 | 0.06 | 8.67 | 0.01 | 2.510 | 0.00 | 0.00 | 2.9 | 97.1 | 0.0 | 0.51 | 0.21 | 0.76 | 4.15 | 3.0 | 0.003 | 0.64 | 0.0 | 0.04 | 17.82 | 0.00 | 2.204 | 8.27 | 3.29 | 2.9 | 97.1 | 0.0 | 0.53 | 1.83 | 0.21 | 0.82 | 3.71 | 1401 | 175 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6L53 | 0836 | 2024-03-16 | 2019-10-22 | 3.63 | 3.79 | — | 3.7 | 0.002 | 0.69 | 0.0 | 0.04 | 9.71 | 0.00 | 2.193 | 8.74 | 3.49 | 9.8 | 89.9 | 0.3 | -4.90 | 0.77 | 0.70 | 0.79 | 3.7 | 0.003 | 0.88 | 0.0 | 0.04 | 14.37 | 0.01 | 2.172 | 14.43 | 3.78 | 11.2 | 88.7 | 0.1 | -2.58 | 0.84 | 0.80 | 0.73 | 1.14 | 13991 | 1935 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RJU | 4906 | 2024-03-10 | 2019-04-29 | 3.2 | 4.49 | 2.14 | 10.0 | 0.007 | 0.93 | 0.0 | 0.05 | 15.36 | 0.00 | 2.423 | 4.52 | 0.00 | 11.6 | 88.4 | 0.0 | -7.10 | 0.22 | -0.01 | -0.80 | 3.9 | 0.003 | 0.66 | 0.0 | 0.03 | 15.97 | 0.00 | 2.278 | 7.54 | 1.01 | 7.0 | 93.0 | 0.0 | -0.88 | 1.30 | 0.30 | 0.04 | 1.02 | 1992 | 131 | 1 | 0 | 0 | 0 | 997 | logfile |
✔ | 7Y13 | 33555 | 2024-03-10 | 2022-06-06 | 3.1 | 3.20 | 3.10 | 3.2 | 0.005 | 0.68 | 0.0 | 0.04 | 13.19 | 0.01 | 2.195 | 8.24 | 0.00 | 6.1 | 93.9 | 0.0 | 1.88 | 0.59 | 0.80 | 3.01 | 3.2 | 0.003 | 0.56 | 0.0 | 0.04 | 15.57 | 0.00 | 2.192 | 8.01 | 1.29 | 5.0 | 95.0 | 0.0 | 2.69 | 0.25 | 0.54 | 0.80 | 2.39 | 2199 | 264 | 1 | 0 | 7 | 2 | 0 | logfile |
✔ | 7XQ1 | 33388 | 2024-03-10 | 2022-05-06 | 3.4 | 3.32 | 3.36 | 3.5 | 0.010 | 1.05 | 1.0 | 0.06 | 13.48 | 0.01 | 2.320 | 6.82 | 0.58 | 2.8 | 97.2 | 0.0 | -6.81 | 0.47 | 0.78 | 3.56 | 3.5 | 0.002 | 0.57 | 0.0 | 0.04 | 14.06 | 0.00 | 2.195 | 7.28 | 1.16 | 2.3 | 97.7 | 0.0 | 1.08 | 1.54 | 0.48 | 0.80 | 2.07 | 3302 | 400 | 1 | 0 | 2 | 0 | 0 | logfile |