Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PTQ	13633	2023-08-15	2021-09-27	4.08	6.47	4.22	4.0	0.005	0.78	0.0	0.04	15.27	0.00	1.983	0.92	0.00	0.0	0.0	0.0	—	0.91	0.80	—	4.0	0.006	0.67	0.0	0.04	19.44	0.00	1.852	43.48	0.00	0.0	0.0	0.0	—	2.75	0.96	0.94	—	17434	0	1	544	0	0	5847	logfile
✔	6XMP	22260	2023-08-10	2020-06-30	3.5	4.29	3.63	4.0	0.007	0.78	0.0	0.04	13.27	0.00	2.192	6.56	0.00	2.9	97.1	0.0	-1.66	0.72	0.84	1.55	4.0	0.003	0.53	0.0	0.04	14.26	0.00	2.173	6.27	0.00	3.2	96.8	0.0	1.22	0.33	0.71	0.85	1.45	8545	1086	1	0	12	0	0	logfile
✔	6XMQ	22261	2023-08-10	2020-06-30	3.7	4.26	3.79	4.0	0.006	0.66	0.0	0.04	12.80	0.00	1.660	6.11	0.00	3.7	96.3	0.0	-1.63	0.72	0.85	1.50	4.0	0.004	0.60	0.0	0.04	14.86	0.00	1.920	7.07	0.22	3.9	96.1	0.0	0.66	1.28	0.72	0.86	1.32	8362	1085	1	0	2	0	0	logfile
✔	7WQX	32715	2023-08-09	2022-01-26	2.7	2.26	—	3.2	0.003	0.53	0.0	0.04	8.53	0.00	2.181	9.03	2.56	6.0	94.0	0.0	-3.61	0.73	0.65	2.93	3.2	0.003	0.77	0.0	0.05	14.82	0.00	2.167	15.01	2.56	8.6	91.4	0.0	-1.89	1.35	0.76	0.69	2.18	4022	501	1	0	9	0	0	logfile
✔	7XSN	33428	2023-08-10	2022-05-14	3.01	4.02	3.04	3.2	0.013	1.06	0.0	0.05	16.67	0.01	2.252	5.79	0.00	0.0	0.0	0.0	—	0.91	0.84	—	3.2	0.006	0.61	0.0	0.03	16.36	0.00	2.111	20.82	0.00	0.0	0.0	0.0	—	0.30	0.92	0.87	—	8279	0	1	387	0	0	0	logfile
✔	7VLT	32026	2023-08-11	2021-10-05	3.1	3.37	3.11	3.4	0.004	0.60	0.0	0.04	12.71	0.00	1.963	3.24	2.19	1.9	98.1	0.0	0.12	0.67	0.83	2.64	3.4	0.003	0.55	0.0	0.04	15.16	0.00	2.010	8.03	0.00	1.3	98.7	0.0	2.53	1.87	0.66	0.83	2.02	9024	1145	1	0	6	0	0	logfile
✔	7XSM	33427	2023-08-12	2022-05-14	4.01	4.70	4.03	4.0	0.002	0.47	0.0	0.03	15.76	0.00	1.969	7.06	0.00	0.0	0.0	0.0	—	0.90	0.75	—	4.0	0.007	0.76	0.0	0.04	19.93	0.01	1.773	49.65	0.00	0.0	0.0	0.0	—	1.70	0.92	0.82	—	12464	0	1	388	0	0	4165	logfile
✔	7ZJ5	14741	2023-08-12	2022-04-08	4.55	5.91	5.09	4.4	0.002	0.65	0.0	0.04	14.68	0.00	2.256	0.50	0.00	0.0	0.0	0.0	—	0.92	0.85	—	4.5	0.008	0.89	0.0	0.04	18.29	0.01	1.666	78.91	0.00	0.0	0.0	0.0	—	3.95	0.94	0.90	—	12014	0	1	374	1	0	4030	logfile
✔	8C4S	16427	2023-08-11	2023-01-04	3.27	3.46	3.25	3.3	0.005	0.85	6.0	0.05	15.99	0.00	2.258	8.25	1.24	2.9	96.9	0.2	1.15	0.82	0.85	2.80	3.3	0.004	0.56	0.0	0.04	16.06	0.00	2.123	8.40	0.00	2.8	97.0	0.2	1.69	0.36	0.83	0.86	3.05	10292	1277	1	0	0	0	0	logfile
✔	7S8U	24922	2023-08-09	2021-09-19	3.7	3.97	—	3.9	0.008	1.19	1.0	0.07	14.00	0.01	2.243	13.10	4.56	8.3	90.5	1.2	-1.14	0.48	0.59	0.59	3.9	0.004	0.86	0.0	0.05	16.32	0.01	2.069	18.36	0.88	9.6	89.9	0.5	-0.50	1.41	0.51	0.62	0.54	5210	667	1	0	0	0	0	logfile
✔	6L42	0828	2023-08-13	2019-10-15	3.4	3.83	—	3.7	0.013	3.32	109.0	0.17	16.55	0.02	1.223	41.56	6.61	11.4	86.6	2.0	-5.16	0.79	0.75	1.25	3.7	0.004	0.88	0.0	0.05	16.72	0.01	2.057	13.83	0.43	11.2	88.5	0.3	-2.67	0.84	0.82	0.84	1.45	14827	1864	1	0	1	0	0	logfile
✔	6XMT	22263	2023-08-10	2020-06-30	3.3	3.96	3.42	3.7	0.004	0.61	0.0	0.04	12.44	0.00	1.814	7.30	0.00	4.5	95.5	0.0	-2.38	0.72	0.82	2.61	3.8	0.002	0.54	0.0	0.04	14.21	0.00	2.054	5.85	0.11	3.4	96.6	0.0	0.58	0.42	0.72	0.85	1.95	8324	1092	1	0	2	0	0	logfile
✔	7VLR	32024	2023-08-11	2021-10-05	3.4	3.65	3.41	3.6	0.004	0.61	0.0	0.04	12.64	0.00	2.052	4.29	0.94	1.6	98.4	0.0	1.47	0.70	0.84	1.66	3.6	0.003	0.55	0.0	0.04	15.43	0.00	2.086	7.32	0.10	1.5	98.5	0.0	3.12	1.54	0.65	0.83	1.35	9003	1145	1	0	5	0	0	logfile
✔	7VLU	32027	2023-08-11	2021-10-05	3.3	3.71	3.36	3.6	0.004	0.63	0.0	0.04	12.85	0.00	1.978	3.76	1.96	2.5	97.5	0.0	-0.35	0.71	0.84	2.31	3.6	0.003	0.58	0.0	0.04	14.68	0.00	1.962	6.31	0.10	1.6	98.4	0.0	2.48	1.91	0.61	0.79	1.51	9110	1159	1	0	6	0	0	logfile
✔	7VLS	32025	2023-08-11	2021-10-05	3.3	3.54	3.30	3.5	0.004	0.62	0.0	0.04	12.94	0.00	1.926	2.53	1.46	2.6	97.4	0.0	-0.24	0.69	0.84	2.33	3.5	0.003	0.58	0.0	0.04	15.83	0.00	1.966	6.39	0.00	1.6	98.4	0.0	2.51	1.51	0.64	0.82	1.72	9003	1141	1	0	6	0	0	logfile
✔	7XSK	33425	2023-08-12	2022-05-14	3.53	4.49	3.42	3.4	0.001	0.44	0.0	0.02	15.94	0.00	1.970	6.98	0.00	0.0	0.0	0.0	—	0.90	0.76	—	3.4	0.007	0.68	0.0	0.04	18.66	0.01	1.750	33.29	0.00	0.0	0.0	0.0	—	1.90	0.91	0.83	—	12467	0	1	388	0	0	4168	logfile
✘	7RAV	24387	2023-08-09	2021-07-02	3.3	2.69	3.21	2.4	0.004	0.93	0.0	0.05	15.84	0.01	2.224	16.68	1.17	16.7	82.9	0.4	-3.36	0.72	0.71	2.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6215	773	1	0	1	0	0	logfile
✔	7XSL	33426	2023-08-12	2022-05-14	3.84	4.65	3.83	3.7	0.002	0.47	0.0	0.02	16.20	0.00	1.935	8.02	0.00	0.0	0.0	0.0	—	0.91	0.77	—	3.8	0.006	0.70	0.0	0.04	18.31	0.01	1.810	33.53	0.00	0.0	0.0	0.0	—	1.02	0.92	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	7o3D	12704	2023-08-12	2021-04-01	3.71	4.15	3.79	4.0	0.003	0.77	0.0	0.05	13.17	0.01	2.146	6.21	0.00	4.2	95.8	0.0	-0.61	0.76	0.72	1.16	3.9	0.002	0.55	0.0	0.04	15.37	0.00	2.019	8.57	0.31	4.9	95.1	0.0	0.18	0.47	0.76	0.73	1.29	11458	709	1	0	0	0	5694	logfile
✔	7o6B	12737	2023-08-13	2021-04-09	3.88	4.21	4.15	3.8	0.003	0.67	0.0	0.04	11.54	0.01	2.128	6.00	0.38	4.3	95.7	0.0	-0.87	0.75	0.67	0.37	3.8	0.002	0.56	0.0	0.04	14.10	0.00	2.026	9.46	0.13	3.6	96.4	0.0	0.66	1.15	0.76	0.69	0.37	14200	879	1	0	0	0	7040	logfile

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