Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7R9M	24329	2023-02-18	2021-06-29	4.0	4.58	—	3.9	0.002	0.38	0.0	0.04	4.68	0.00	2.214	3.88	0.00	8.3	90.9	0.8	-4.83	0.85	0.77	—	3.9	0.002	0.54	0.0	0.04	9.14	0.00	2.110	9.06	0.00	2.6	97.4	0.0	-0.08	1.73	0.86	0.79	—	7727	505	1	0	0	0	3939	logfile
✔	7PTX	13642	2023-02-18	2021-09-27	4.03	4.17	—	3.9	0.003	0.76	0.0	0.05	14.08	0.01	2.202	19.18	0.00	10.6	89.4	0.0	-1.97	0.84	0.72	—	3.9	0.003	0.77	0.0	0.04	14.49	0.00	2.255	17.66	0.00	9.0	91.0	0.0	-1.21	0.49	0.85	0.73	—	7653	1000	1	0	0	0	0	logfile
✔	7R1Y	14243	2023-02-17	2022-02-03	3.0	3.01	2.95	3.0	0.002	0.52	0.0	0.04	13.13	0.00	2.252	6.47	3.44	2.9	97.1	0.0	0.36	0.72	0.71	2.29	3.0	0.003	0.61	0.0	0.04	16.45	0.00	2.104	13.37	3.13	4.0	96.0	0.0	0.97	1.13	0.74	0.74	2.05	5704	723	1	0	0	0	0	logfile
✔	7R9E	24324	2023-02-18	2021-06-29	4.0	4.83	—	3.9	0.002	0.37	0.0	0.04	4.45	0.00	2.277	3.11	0.00	9.9	88.7	1.4	-3.58	0.87	0.80	—	3.9	0.002	0.56	0.0	0.04	9.08	0.00	2.177	7.90	0.00	5.0	95.0	0.0	0.09	1.76	0.88	0.82	—	7726	505	1	0	0	0	3938	logfile
✔	3KTT	5148	2023-02-17	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	179.94	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	2.1	0.005	1.24	0.0	0.05	17.17	0.01	2.010	31.44	0.49	9.2	89.6	1.2	-2.49	2.03	0.31	0.42	—	3855	513	1	0	0	0	0	logfile
✔	6PZB	20533	2023-02-18	2019-07-31	4.55	4.69	—	4.5	0.009	1.24	0.0	0.06	8.37	0.01	2.231	3.11	0.00	5.9	94.1	0.0	-3.87	0.62	0.76	—	4.5	0.003	0.66	0.0	0.04	8.76	0.00	2.041	6.70	0.00	5.1	94.9	0.0	1.37	0.60	0.64	0.77	—	7747	1357	1	0	0	0	0	logfile
✔	3J9E	6240	2023-02-17	2015-01-10	3.3	2.66	—	3.3	0.032	3.28	0.0	0.09	21.31	0.02	1.223	20.81	24.26	9.8	87.3	2.9	-3.41	0.77	0.88	3.26	3.3	0.003	0.83	0.0	0.04	17.80	0.00	2.221	10.09	0.23	7.6	91.5	1.0	0.89	1.23	0.73	0.86	3.56	4098	520	1	0	0	0	0	logfile
✔	7R9K	24328	2023-02-18	2021-06-29	4.1	4.93	—	4.0	0.002	0.35	0.0	0.04	4.65	0.00	2.223	3.24	0.00	10.3	89.1	0.6	-4.05	0.83	0.71	—	4.1	0.004	0.59	0.0	0.04	8.20	0.00	1.791	11.91	0.00	6.4	93.6	0.0	-0.32	1.79	0.89	0.83	—	7726	505	1	0	0	0	3938	logfile
✔	7R9U	24331	2023-02-18	2021-06-29	4.4	5.41	—	4.3	0.002	0.34	0.0	0.04	4.36	0.00	2.248	3.50	0.00	9.1	90.3	0.6	-4.49	0.78	0.62	—	4.3	0.002	0.50	0.0	0.04	8.43	0.00	2.006	8.03	0.00	2.6	97.4	0.0	0.60	2.37	0.91	0.84	—	7727	505	1	0	0	0	3939	logfile
✔	7Wo9	32643	2023-02-20	2022-01-20	2.81	3.01	—	3.0	0.002	0.50	0.0	0.04	13.97	0.00	2.227	5.86	0.00	4.2	95.8	0.0	1.49	0.70	0.78	2.04	3.0	0.002	0.51	0.0	0.04	16.20	0.00	2.164	5.55	1.21	4.7	95.3	0.0	1.88	0.74	0.72	0.81	1.85	12743	1581	1	0	0	0	0	logfile
✔	6TGN	10499	2023-02-16	2019-11-17	3.9	3.83	—	4.0	0.010	1.73	0.0	0.12	11.93	0.01	2.161	5.17	1.39	4.7	95.3	0.0	-3.57	0.54	0.90	1.73	4.0	0.004	0.99	0.0	0.04	15.48	0.00	2.435	13.28	1.39	2.3	97.7	0.0	-0.19	1.18	0.53	0.82	0.82	672	88	1	0	0	0	0	logfile
✔	5Lii	4053	2023-02-15	2016-07-14	3.8	2.99	—	3.9	0.015	2.41	6.0	0.14	12.69	0.01	1.855	42.83	1.41	16.9	81.9	1.2	-6.10	0.55	0.70	3.46	3.8	0.003	0.88	0.0	0.04	15.96	0.01	2.201	13.15	1.41	14.6	84.7	0.7	-4.22	0.87	0.56	0.67	1.49	3098	433	1	0	0	0	0	logfile
✔	7SAM	24952	2023-02-17	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	13.28	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.007	0.88	0.0	0.04	22.84	0.01	1.820	82.61	0.00	0.0	0.0	0.0	—	5.78	0.96	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	6PZC	20534	2023-02-18	2019-07-31	4.34	4.63	—	4.4	0.008	1.12	0.0	0.06	11.22	0.01	2.137	7.44	0.42	9.7	90.3	0.0	-5.15	0.60	0.54	—	4.4	0.003	0.71	0.0	0.04	10.68	0.00	2.117	11.13	0.00	5.4	94.6	0.0	0.18	1.66	0.70	0.77	—	7456	1173	1	0	0	0	0	logfile
✔	7BC5	12139	2023-02-16	2020-12-18	3.1	3.06	3.11	3.1	0.005	1.05	0.0	0.05	15.92	0.01	2.314	7.83	0.76	8.2	91.8	0.0	-5.64	0.23	0.62	0.92	3.0	0.003	0.72	0.0	0.04	17.04	0.00	2.243	14.42	0.76	7.5	92.5	0.0	-2.75	1.30	0.23	0.58	0.92	1200	161	1	0	0	0	0	logfile
✘	3A5X	1641	2023-02-17	2009-08-13	4.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-4.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3616	494	1	0	0	0	0	logfile
✔	5LiJ	4054	2023-02-16	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.64	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.005	1.18	0.0	0.04	10.31	0.00	2.148	15.12	0.00	32.0	68.0	0.0	-5.66	1.48	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✔	6FU8	4319	2023-02-16	2018-02-26	3.2	4.43	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.004	0.85	0.0	0.04	15.02	0.00	2.243	16.86	0.00	11.2	87.5	1.2	-1.85	3.09	0.23	0.62	-0.89	1364	82	1	0	0	0	711	logfile
✔	7K8D	22728	2023-02-19	2020-09-26	4.33	4.48	—	4.7	0.004	1.12	0.0	0.06	12.53	0.01	2.205	23.61	1.86	4.3	95.7	0.0	-2.98	0.33	0.40	—	4.6	0.003	0.80	0.0	0.04	13.50	0.01	2.094	15.68	0.00	4.9	95.1	0.0	0.82	1.46	0.41	0.49	—	5529	725	1	0	0	0	0	logfile
✔	6WU0	21901	2023-02-17	2020-05-04	3.59	3.92	—	3.9	0.003	0.65	0.0	0.04	13.43	0.00	2.211	10.57	0.00	6.0	94.0	0.0	-1.89	0.56	0.63	0.78	3.9	0.004	0.81	0.0	0.04	15.86	0.01	2.104	14.65	0.76	7.8	92.2	0.0	-0.03	0.53	0.54	0.64	0.78	6340	854	1	0	0	0	0	logfile

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