Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5M6S	3451	2023-04-19	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.6	0.003	0.63	0.0	0.03	18.81	0.00	1.995	10.68	0.00	6.2	93.8	0.0	2.64	2.46	0.03	0.08	—	1593	98	1	0	0	0	793	logfile
✔	7RXH	24731	2023-04-20	2021-08-23	2.3	3.07	—	2.8	0.009	1.40	0.0	0.05	19.48	0.00	2.211	13.92	0.56	2.7	97.1	0.2	-0.87	0.63	0.78	3.25	2.8	0.004	0.49	0.0	0.04	15.67	0.00	2.016	13.47	1.30	3.7	96.3	0.0	2.12	1.67	0.60	0.91	4.20	5631	626	1	0	18	24	48	logfile
✔	7S5V	24840	2023-04-21	2021-09-12	3.3	3.61	—	3.5	0.006	0.88	0.0	0.05	15.45	0.01	2.093	5.38	4.27	5.1	94.9	0.0	-4.70	0.72	0.85	2.01	3.5	0.003	0.59	0.0	0.04	15.79	0.00	1.904	7.82	0.34	4.5	95.5	0.0	-0.42	0.39	0.69	0.85	1.66	10964	1397	1	0	4	0	0	logfile
✔	7Mi3	23838	2023-04-21	2021-04-16	3.5	3.72	3.45	3.6	0.012	1.47	0.0	0.08	12.84	0.01	1.978	5.17	1.94	6.8	92.8	0.3	-1.80	0.85	0.86	3.53	3.6	0.003	0.69	0.0	0.04	14.87	0.00	1.987	10.40	0.55	4.0	96.0	0.0	0.70	2.29	0.85	0.87	2.77	9682	1192	1	0	4	0	0	logfile
✔	8E4Y	27898	2023-04-20	2022-08-19	3.4	3.42	3.37	3.5	0.016	1.86	0.0	0.09	15.22	0.01	2.412	0.75	0.00	3.8	96.2	0.0	-2.41	0.56	0.75	2.88	3.5	0.003	0.50	0.0	0.04	16.51	0.00	2.204	4.03	0.00	2.5	97.5	0.0	1.32	1.32	0.69	0.88	2.47	5294	651	1	0	2	0	0	logfile
✔	7URM	26714	2023-04-19	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	23.67	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.16	0.0	0.05	22.87	0.01	1.983	29.94	0.00	0.0	0.0	0.0	—	1.70	0.15	0.54	—	1905	0	1	90	0	0	0	logfile
✘	7P06	13145	2023-04-25	2021-06-29	3.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21476	1350	1	0	3	0	10638	logfile
✔	7Mi8	23842	2023-04-23	2021-04-16	3.7	4.01	3.56	3.8	0.006	0.97	0.0	0.05	14.13	0.01	2.226	5.27	0.38	2.4	97.4	0.1	-3.11	0.79	0.84	2.27	3.8	0.003	0.70	0.0	0.04	16.37	0.00	2.192	9.90	0.51	3.4	96.6	0.0	1.04	0.64	0.81	0.85	1.82	7034	868	1	0	0	0	0	logfile
✔	7UVK	26812	2023-04-21	2022-05-02	3.28	3.22	3.00	3.3	0.005	0.74	0.0	0.05	13.60	0.00	2.168	11.01	0.00	9.0	91.0	0.0	-3.16	0.57	0.78	2.35	3.2	0.003	0.68	0.0	0.04	16.31	0.00	2.075	11.69	0.61	9.4	90.6	0.0	-2.27	1.11	0.71	0.87	2.85	10350	1295	1	0	0	0	0	logfile
✔	7Z1H	14446	2023-04-23	2022-02-24	3.12	4.01	—	3.5	0.016	0.97	2.0	0.04	12.32	0.00	1.830	20.25	0.18	10.8	88.7	0.5	-1.31	0.79	0.79	1.28	3.5	0.016	0.94	2.0	0.04	14.23	0.00	1.692	20.59	0.00	11.7	87.9	0.4	-1.08	0.41	0.79	0.77	1.28	15032	1848	1	0	0	0	0	logfile
✘	5A7U	3079	2023-04-19	2015-07-10	4.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	1	0	1	0	231	logfile
✔	7B54	12018	2023-04-23	2020-12-03	3.1	3.96	—	3.6	0.005	0.77	0.0	0.04	14.53	0.00	2.081	15.09	0.19	12.5	87.1	0.4	-1.25	0.82	0.83	1.99	3.6	0.004	0.68	0.0	0.04	15.78	0.00	2.106	13.07	0.19	11.9	87.7	0.4	-0.71	0.32	0.81	0.82	1.57	14148	1732	1	0	0	0	0	logfile
✔	7oJJ	12953	2023-04-23	2021-05-16	3.5	4.03	3.58	3.5	0.006	0.66	2.0	0.06	13.63	0.00	2.009	9.47	0.12	11.4	88.6	0.0	-3.69	0.92	0.87	2.01	3.5	0.003	0.60	0.0	0.04	14.79	0.00	2.000	8.25	0.06	7.7	92.3	0.0	-0.47	0.98	0.92	0.88	1.67	14330	1785	1	0	2	0	0	logfile
✔	7B6E	12053	2023-04-19	2020-12-07	4.5	2.79	—	5.1	0.005	1.03	0.0	0.05	15.04	0.01	2.129	36.05	0.00	10.9	89.1	0.0	-3.88	0.62	0.66	—	2.4	0.004	0.99	0.0	0.05	14.87	0.00	2.111	27.61	0.00	11.3	88.7	0.0	-1.65	0.83	0.61	0.67	—	2205	269	1	0	0	0	0	logfile
✔	7URi	26713	2023-04-19	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	25.77	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.008	1.44	0.0	0.07	23.84	0.01	2.072	23.68	0.00	0.0	0.0	0.0	—	2.06	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	7Mi6	23841	2023-04-29	2021-04-16	3.9	4.23	3.91	4.0	0.012	1.49	3.0	0.08	13.51	0.01	2.027	6.46	1.32	5.3	94.3	0.4	-2.30	0.84	0.82	1.35	4.0	0.003	0.75	0.0	0.04	16.29	0.00	1.991	14.50	0.14	3.1	96.8	0.0	0.58	1.19	0.85	0.83	1.41	19653	2419	1	0	4	0	0	logfile
✔	7NXF	12638	2023-04-20	2021-03-18	3.1	4.01	3.17	3.6	0.006	0.82	0.0	0.04	14.20	0.01	2.281	9.15	0.00	7.9	92.1	0.0	-0.71	0.60	0.80	1.58	3.7	0.005	0.67	0.0	0.04	15.64	0.00	1.905	9.22	0.44	7.3	92.7	0.0	0.44	1.96	0.59	0.86	1.35	6405	829	1	0	3	0	0	logfile
✔	6C0V	7325	2023-04-21	2018-01-02	3.4	3.67	—	3.9	0.008	1.14	0.0	0.06	12.84	0.00	1.961	0.33	0.00	4.3	95.7	0.0	-2.20	0.42	0.67	2.82	3.8	0.003	0.63	0.0	0.04	16.30	0.00	1.939	7.86	0.96	2.8	97.2	0.0	1.00	1.45	0.58	0.86	2.33	8976	1154	1	0	4	0	0	logfile
✔	8E2G	27835	2023-04-20	2022-08-15	2.99	3.17	3.03	3.1	0.003	0.60	0.0	0.04	15.68	0.00	1.928	12.10	2.42	6.4	93.6	0.0	-1.77	0.46	0.74	2.37	3.1	0.003	0.58	0.0	0.04	15.95	0.00	1.938	11.98	2.86	7.6	92.4	0.0	-1.67	1.00	0.46	0.74	2.07	8110	523	1	0	0	0	4078	logfile
✔	7BC5	12139	2023-04-19	2020-12-18	3.1	3.06	3.11	3.1	0.005	1.05	0.0	0.05	15.92	0.01	2.314	7.83	0.76	8.2	91.8	0.0	-5.64	0.23	0.62	0.92	3.0	0.003	0.72	0.0	0.04	17.04	0.00	2.243	14.42	0.76	7.5	92.5	0.0	-2.75	1.30	0.23	0.58	0.92	1200	161	1	0	0	0	0	logfile

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