Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PD4	13330	2023-11-14	2021-08-04	4.9	4.13	—	7.8	0.005	0.87	0.0	0.05	14.59	0.00	2.035	38.59	0.00	11.7	88.3	0.0	-4.80	0.73	0.72	—	7.8	0.003	0.78	0.0	0.04	13.56	0.00	2.126	18.85	0.00	5.8	94.2	0.0	-0.39	1.28	0.73	0.73	—	6676	842	1	0	0	0	0	logfile
✔	7Si3	25137	2023-11-15	2021-10-12	3.19	3.21	—	3.2	0.003	1.19	0.0	0.04	13.00	0.00	2.038	2.15	0.00	1.5	98.5	0.0	3.72	0.48	0.77	1.74	3.1	0.003	0.85	0.0	0.04	14.48	0.00	1.919	4.15	0.00	2.7	97.3	0.0	2.05	0.93	0.51	0.82	2.32	13500	873	1	0	2	0	6901	logfile
✔	7SYF	25524	2023-11-15	2021-11-24	4.2	3.03	3.92	2.2	0.013	1.86	8.0	0.10	14.32	0.01	2.460	1.62	1.31	3.9	96.1	0.0	-1.56	0.67	0.61	—	2.2	0.003	0.78	0.0	0.04	13.94	0.00	1.993	16.84	0.08	3.1	96.9	0.0	0.80	1.17	0.68	0.63	—	11108	1391	1	0	0	0	0	logfile
✔	7YiM	33861	2023-11-13	2022-07-17	2.6	2.93	2.77	2.9	0.013	1.14	0.0	0.07	15.89	0.01	2.272	6.72	0.78	4.9	95.1	0.0	-4.17	0.67	0.68	1.25	2.9	0.003	0.64	0.0	0.04	17.74	0.00	2.221	10.52	2.52	3.4	96.6	0.0	0.68	1.25	0.64	0.66	1.25	4657	592	1	0	0	0	0	logfile
✔	6UES	20755	2023-11-13	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.89	0.0	0.04	21.28	0.01	1.783	38.25	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	7EZ0	31385	2023-11-14	2021-06-01	3.14	3.26	—	3.2	0.003	0.56	0.0	0.03	14.43	0.00	1.804	2.25	0.00	0.0	0.0	0.0	—	0.74	0.79	—	3.2	0.006	0.68	0.0	0.04	15.56	0.00	1.860	8.26	0.00	0.0	0.0	0.0	—	1.91	0.76	0.85	—	8306	0	1	387	27	0	0	logfile
✔	7K1V	22630	2023-11-13	2020-09-08	4.6	4.95	—	4.8	0.008	1.12	0.0	0.06	15.77	0.01	2.159	13.77	0.40	11.0	89.0	0.0	-4.04	0.71	0.71	—	4.8	0.003	0.72	0.0	0.04	13.84	0.00	2.160	21.48	0.00	7.3	92.7	0.0	-1.21	2.35	0.70	0.75	—	4971	626	1	0	0	0	0	logfile
✔	6LLE	0912	2023-11-14	2019-12-23	2.9	3.06	2.85	3.0	0.005	0.63	0.0	0.04	12.59	0.00	2.050	6.54	0.00	2.7	97.3	0.0	-1.87	0.67	0.82	3.28	3.0	0.002	0.56	0.0	0.04	16.67	0.00	2.092	7.67	1.95	2.1	97.9	0.0	0.63	0.45	0.68	0.84	2.79	7916	1020	1	0	4	0	0	logfile
✔	8DEP	27394	2023-11-13	2022-06-21	3.6	4.01	3.65	3.8	0.008	0.76	0.0	0.07	13.59	0.01	2.197	5.44	0.65	0.5	99.5	0.0	3.03	0.47	0.78	1.93	3.9	0.003	0.62	0.0	0.03	16.80	0.00	2.214	7.84	0.32	1.5	98.5	0.0	2.16	0.65	0.46	0.77	1.68	3223	398	1	0	4	0	0	logfile
✔	7WBU	32406	2023-11-16	2021-12-17	3.42	3.70	—	3.6	0.003	0.59	1.0	0.04	15.37	0.01	2.145	7.00	0.37	2.2	97.8	0.0	0.89	0.67	0.73	1.75	3.6	0.003	0.61	0.0	0.04	17.09	0.00	2.215	9.24	0.24	2.7	97.3	0.0	0.75	0.48	0.69	0.79	1.88	7170	898	1	0	1	0	0	logfile
✔	5YWD	6853	2023-11-14	2017-11-29	4.2	4.38	4.11	4.2	0.003	0.73	0.0	0.04	14.12	0.00	2.031	12.08	6.20	4.1	95.9	0.0	-1.54	0.62	0.74	—	4.2	0.003	0.76	0.0	0.04	13.58	0.00	1.928	14.00	0.00	4.0	96.0	0.0	1.14	1.51	0.65	0.77	—	8997	1154	1	0	4	0	0	logfile
✔	7K11	22620	2023-11-14	2020-09-06	3.21	3.34	—	3.3	0.005	0.92	0.0	0.05	15.33	0.01	2.271	4.65	0.46	9.6	90.3	0.1	-5.00	0.69	0.76	1.74	3.3	0.003	0.62	0.0	0.04	16.63	0.00	2.259	7.50	0.37	9.4	90.6	0.0	-0.83	1.23	0.70	0.78	1.30	10011	1254	1	0	0	0	0	logfile
✔	5oJS	3824	2023-11-19	2017-07-24	3.7	3.84	—	3.7	0.007	1.43	0.0	0.07	13.41	0.01	2.211	8.29	2.09	14.8	84.6	0.6	-5.58	0.80	0.75	1.62	3.7	0.003	0.91	0.0	0.05	16.05	0.01	2.122	16.03	0.38	13.5	86.3	0.2	-1.93	0.80	0.80	0.74	0.88	28407	3473	1	0	0	0	0	logfile
✔	7KPW	22990	2023-11-13	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.9	0.003	0.73	0.0	0.04	5.85	0.00	2.148	2.79	0.00	11.5	87.9	0.6	-0.50	2.04	0.82	0.82	—	4313	865	1	0	0	0	0	logfile
✔	7ZH6	14725	2023-11-13	2022-04-05	3.67	4.10	0.95	4.2	0.006	0.90	0.0	0.06	16.13	0.01	1.607	26.36	1.26	6.4	93.6	0.0	0.99	0.54	0.73	1.36	4.2	0.003	0.73	0.0	0.04	16.88	0.00	2.217	14.09	0.00	6.0	94.0	0.0	0.95	1.12	0.54	0.74	1.24	3771	478	1	0	1	0	0	logfile
✔	7Si7	25139	2023-11-15	2021-10-12	3.49	3.47	—	3.4	0.003	1.32	0.0	0.04	13.13	0.00	1.963	5.23	0.00	2.6	97.4	0.0	2.38	0.49	0.78	0.67	3.4	0.002	0.92	0.0	0.04	15.00	0.00	1.950	5.49	0.17	3.1	96.9	0.0	2.10	0.51	0.51	0.83	0.96	11287	728	1	0	2	0	5777	logfile
✔	6XJB	22205	2023-11-15	2020-06-23	3.8	4.06	—	3.9	0.002	0.56	0.0	0.04	13.11	0.00	2.165	9.70	0.00	8.6	91.4	0.0	-3.06	0.88	0.82	1.76	3.9	0.004	0.64	0.0	0.04	15.19	0.00	2.043	13.87	0.19	7.8	92.2	0.0	-1.33	1.82	0.88	0.85	2.02	10070	1277	1	0	0	0	0	logfile
✔	7Si6	25138	2023-11-15	2021-10-12	3.32	3.28	—	3.3	0.003	1.22	0.0	0.04	13.58	0.00	2.044	4.51	0.00	1.4	98.6	0.0	2.88	0.46	0.77	1.67	3.3	0.003	0.85	0.0	0.04	14.76	0.00	1.919	4.22	0.41	1.7	98.3	0.0	2.52	0.39	0.52	0.82	1.82	13515	873	1	0	2	0	6910	logfile
✘	7FiL	31602	2023-11-13	2021-07-31	3.0	2.84	—	3.6	0.008	1.05	2.0	0.06	18.46	0.01	2.213	19.35	8.76	7.7	91.1	1.2	-1.82	0.71	0.75	1.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3993	504	1	0	0	0	0	logfile
✔	7TX6	26155	2023-11-13	2022-02-07	3.3	3.60	3.29	3.5	0.008	0.90	1.0	0.05	12.44	0.01	2.327	6.69	0.62	3.0	97.0	0.0	2.51	0.53	0.76	2.79	3.6	0.003	0.71	1.0	0.05	15.51	0.01	2.189	6.37	0.00	3.3	96.7	0.0	1.64	1.61	0.53	0.77	2.32	3169	398	1	0	2	0	0	logfile

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