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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8HJ9 | 34835 | 2023-08-09 | 2022-11-22 | 3.12 | 3.29 | 3.00 | 3.2 | 0.004 | 0.65 | 0.0 | 0.04 | 15.54 | 0.00 | 2.234 | 10.94 | 0.00 | 2.7 | 97.3 | 0.0 | 1.80 | 0.43 | 0.76 | 3.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3274 | 416 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7YAM | 33717 | 2023-08-10 | 2022-06-28 | 3.3 | 3.46 | 3.26 | 3.4 | 0.003 | 0.53 | 0.0 | 0.04 | 14.47 | 0.00 | 1.756 | 6.05 | 0.13 | 1.6 | 98.4 | 0.0 | 1.95 | 0.70 | 0.80 | 2.17 | 3.4 | 0.006 | 0.60 | 0.0 | 0.04 | 16.18 | 0.00 | 1.860 | 8.63 | 0.40 | 2.3 | 97.7 | 0.0 | 1.41 | 0.42 | 0.69 | 0.83 | 1.72 | 6672 | 871 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7K8D | 22728 | 2023-08-12 | 2020-09-26 | 4.33 | 4.48 | — | 4.7 | 0.004 | 1.12 | 0.0 | 0.06 | 12.53 | 0.01 | 2.205 | 23.61 | 1.86 | 4.3 | 95.7 | 0.0 | -2.98 | 0.33 | 0.40 | — | 4.6 | 0.003 | 0.80 | 0.0 | 0.04 | 13.50 | 0.01 | 2.094 | 15.68 | 0.00 | 4.9 | 95.1 | 0.0 | 0.82 | 1.46 | 0.41 | 0.49 | — | 5529 | 725 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XUN | 33475 | 2023-08-09 | 2022-05-19 | 3.4 | 3.91 | 3.41 | 3.8 | 0.002 | 0.57 | 0.0 | 0.04 | 13.72 | 0.00 | 2.129 | 11.02 | 0.00 | 4.1 | 95.9 | 0.0 | -0.92 | 0.72 | 0.76 | 0.33 | 3.8 | 0.003 | 0.72 | 0.0 | 0.05 | 15.95 | 0.00 | 2.159 | 12.95 | 0.33 | 4.9 | 95.1 | 0.0 | -0.13 | 1.11 | 0.72 | 0.77 | 0.22 | 5591 | 741 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SKZ | 10232 | 2023-08-16 | 2019-08-16 | 3.4 | 3.55 | — | 3.5 | 0.011 | 0.82 | 1.0 | 0.05 | 14.81 | 0.01 | 1.872 | 8.66 | 5.39 | 7.4 | 92.5 | 0.1 | -3.09 | 0.72 | 0.81 | 1.81 | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 16.15 | 0.00 | 2.146 | 7.38 | 0.35 | 4.4 | 95.6 | 0.0 | 1.33 | 0.75 | 0.73 | 0.84 | 1.72 | 20930 | 2638 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7YiM | 33861 | 2023-08-09 | 2022-07-17 | 2.6 | 2.93 | 2.77 | 2.9 | 0.013 | 1.14 | 0.0 | 0.07 | 15.89 | 0.01 | 2.272 | 6.72 | 0.78 | 4.9 | 95.1 | 0.0 | -4.17 | 0.67 | 0.68 | 1.25 | 2.9 | 0.003 | 0.64 | 0.0 | 0.04 | 17.74 | 0.00 | 2.221 | 10.52 | 2.52 | 3.4 | 96.6 | 0.0 | 0.68 | 1.25 | 0.64 | 0.66 | 1.25 | 4657 | 592 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K8C | 22726 | 2023-08-12 | 2020-09-26 | 4.27 | 4.22 | — | 4.2 | 0.004 | 0.84 | 2.0 | 0.05 | 13.70 | 0.01 | 2.196 | 12.83 | 0.85 | 3.2 | 96.8 | 0.0 | 0.14 | 0.47 | 0.56 | — | 4.2 | 0.003 | 0.84 | 0.0 | 0.04 | 13.41 | 0.01 | 2.150 | 15.24 | 0.17 | 4.0 | 96.0 | 0.0 | 0.61 | 0.60 | 0.50 | 0.61 | — | 5524 | 723 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5G2Y | 3332 | 2023-08-13 | 2016-04-16 | 4.5 | 4.38 | — | 3.8 | 0.001 | 0.22 | 0.0 | 0.01 | 11.90 | 0.00 | 2.269 | 2.32 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.58 | 0.28 | — | 3.7 | 0.007 | 1.02 | 0.0 | 0.05 | 23.60 | 0.01 | 1.933 | 73.59 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.96 | 0.89 | 0.78 | — | 13494 | 0 | 1 | 630 | 0 | 0 | 0 | logfile |
✔ | 6WYJ | 21966 | 2023-08-09 | 2020-05-13 | 3.7 | 3.74 | — | 3.8 | 0.010 | 0.64 | 0.0 | 0.05 | 12.33 | 0.00 | 2.268 | 5.08 | 0.00 | 5.3 | 94.7 | 0.0 | -4.80 | 0.59 | 0.78 | 4.37 | 3.8 | 0.003 | 0.59 | 0.0 | 0.04 | 14.52 | 0.00 | 2.333 | 5.74 | 0.00 | 1.8 | 98.2 | 0.0 | 2.16 | 0.60 | 0.63 | 0.80 | 1.47 | 2949 | 398 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MPE | 23932 | 2023-08-12 | 2021-05-04 | 3.2 | 3.91 | — | 3.8 | 0.005 | 0.69 | 0.0 | 0.04 | 14.10 | 0.00 | 2.174 | 14.62 | 0.00 | 6.9 | 93.1 | 0.0 | -2.52 | 0.62 | 0.77 | 2.09 | 3.8 | 0.003 | 0.64 | 0.0 | 0.04 | 15.96 | 0.00 | 2.092 | 11.91 | 0.41 | 5.5 | 94.5 | 0.0 | -0.53 | 1.11 | 0.61 | 0.76 | 1.30 | 11214 | 1428 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K8B | 22725 | 2023-08-09 | 2020-09-26 | 2.94 | 2.86 | — | 3.1 | 0.005 | 0.83 | 2.0 | 0.05 | 14.13 | 0.01 | 2.214 | 14.30 | 0.68 | 5.5 | 94.5 | 0.0 | -0.97 | 0.41 | 0.61 | 1.17 | 3.1 | 0.005 | 0.89 | 0.0 | 0.05 | 17.17 | 0.01 | 2.075 | 18.75 | 5.07 | 6.4 | 93.6 | 0.0 | -0.82 | 1.19 | 0.42 | 0.65 | 0.86 | 5543 | 726 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6X12 | 21986 | 2023-08-09 | 2020-05-18 | 3.52 | 3.69 | — | 3.7 | 0.008 | 1.08 | 0.0 | 0.06 | 15.87 | 0.01 | 2.322 | 3.01 | 0.00 | 2.7 | 97.3 | 0.0 | -5.29 | 0.65 | 0.84 | 1.43 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 15.88 | 0.00 | 2.262 | 7.77 | 0.63 | 2.7 | 97.3 | 0.0 | 0.14 | 1.20 | 0.66 | 0.84 | 1.26 | 3059 | 407 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7R9U | 24331 | 2023-08-10 | 2021-06-29 | 4.4 | 5.41 | — | 4.3 | 0.002 | 0.34 | 0.0 | 0.04 | 4.36 | 0.00 | 2.248 | 3.50 | 0.00 | 9.1 | 90.3 | 0.6 | -4.49 | 0.78 | 0.62 | — | 4.3 | 0.002 | 0.50 | 0.0 | 0.04 | 8.43 | 0.00 | 2.006 | 8.03 | 0.00 | 2.6 | 97.4 | 0.0 | 0.60 | 2.37 | 0.91 | 0.84 | — | 7727 | 505 | 1 | 0 | 0 | 0 | 3939 | logfile |
✔ | 8FD5 | 29002 | 2023-08-09 | 2022-12-02 | 4.57 | 4.19 | — | 10.0 | 0.016 | 2.15 | 4.0 | 0.13 | 13.14 | 0.02 | 2.541 | 0.16 | 0.29 | 3.8 | 96.2 | 0.0 | -1.38 | 0.28 | 0.02 | — | 3.5 | 0.004 | 0.81 | 0.0 | 0.04 | 13.27 | 0.01 | 2.112 | 15.37 | 0.00 | 6.2 | 93.8 | 0.0 | -1.75 | 1.59 | 0.40 | 0.17 | — | 3214 | 419 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6X13 | 21987 | 2023-08-09 | 2020-05-18 | 3.66 | 3.77 | — | 3.8 | 0.007 | 1.04 | 1.0 | 0.05 | 16.27 | 0.01 | 2.340 | 4.80 | 0.31 | 6.5 | 93.5 | 0.0 | -3.73 | 0.64 | 0.84 | 1.86 | 3.8 | 0.003 | 0.66 | 0.0 | 0.04 | 16.00 | 0.00 | 2.254 | 8.98 | 0.00 | 5.3 | 94.7 | 0.0 | 1.35 | 0.42 | 0.64 | 0.84 | 1.86 | 3136 | 417 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 6HYP | 0309 | 2023-08-12 | 2018-10-22 | 4.4 | 4.53 | — | 4.4 | 0.003 | 0.72 | 0.0 | 0.05 | 8.72 | 0.00 | 1.943 | 1.67 | 0.34 | 7.3 | 92.2 | 0.4 | -5.99 | 0.75 | 0.69 | — | 4.4 | 0.004 | 0.79 | 0.0 | 0.04 | 8.88 | 0.00 | 1.995 | 5.56 | 0.00 | 13.4 | 86.3 | 0.2 | -1.62 | 0.63 | 0.77 | 0.75 | — | 12392 | 2082 | 1 | 0 | 192 | 0 | 0 | logfile |
✔ | 6YV1 | 10940 | 2023-08-09 | 2020-04-27 | 3.4 | 4.09 | 3.01 | 3.7 | 0.002 | 0.58 | 0.0 | 0.04 | 12.66 | 0.00 | 2.272 | 8.02 | 1.85 | 1.0 | 99.0 | 0.0 | -4.45 | 0.52 | 0.76 | 1.48 | 3.7 | 0.003 | 0.65 | 0.0 | 0.04 | 13.97 | 0.00 | 2.248 | 6.45 | 0.00 | 2.2 | 97.8 | 0.0 | 1.32 | 0.60 | 0.50 | 0.86 | 1.34 | 2496 | 328 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZH0 | 14716 | 2023-08-09 | 2022-04-05 | 3.2 | 3.63 | 3.07 | 3.5 | 0.004 | 0.72 | 0.0 | 0.04 | 13.97 | 0.01 | 2.191 | 14.27 | 0.24 | 6.0 | 94.0 | 0.0 | 1.08 | 0.65 | 0.75 | 3.58 | 3.5 | 0.003 | 0.68 | 0.0 | 0.04 | 16.34 | 0.00 | 2.220 | 14.02 | 0.73 | 5.5 | 94.3 | 0.2 | 1.04 | 0.51 | 0.67 | 0.77 | 2.84 | 3869 | 495 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8B0o | 15790 | 2023-08-10 | 2022-09-07 | 3.02 | 3.35 | 3.12 | 3.3 | 0.009 | 0.70 | 0.0 | 0.04 | 11.13 | 0.02 | 2.255 | 6.96 | 0.00 | 6.0 | 94.0 | 0.0 | -0.78 | 0.58 | 0.84 | 4.68 | 3.3 | 0.003 | 0.57 | 0.0 | 0.04 | 14.81 | 0.00 | 2.214 | 7.97 | 0.00 | 6.3 | 93.7 | 0.0 | -0.37 | 0.90 | 0.56 | 0.85 | 3.89 | 3995 | 506 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 8B0M | 15788 | 2023-08-10 | 2022-09-07 | 3.01 | 3.39 | 3.03 | 3.3 | 0.003 | 0.66 | 0.0 | 0.04 | 10.77 | 0.00 | 2.258 | 5.92 | 0.48 | 5.7 | 94.3 | 0.0 | -0.18 | 0.57 | 0.84 | 5.07 | 3.3 | 0.003 | 0.56 | 0.0 | 0.04 | 13.28 | 0.00 | 2.239 | 6.42 | 0.00 | 5.9 | 94.1 | 0.0 | 0.50 | 1.70 | 0.58 | 0.86 | 4.35 | 4015 | 508 | 1 | 0 | 1 | 0 | 0 | logfile |