Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XPZ	33386	2023-04-19	2022-05-06	3.4	3.31	3.34	3.6	0.005	0.73	0.0	0.05	12.26	0.01	2.311	6.57	0.58	5.5	94.5	0.0	-6.77	0.49	0.79	3.43	3.6	0.004	0.68	0.0	0.04	14.09	0.00	2.156	8.10	0.58	5.0	95.0	0.0	-0.80	1.17	0.43	0.76	2.59	3227	402	1	0	0	0	0	logfile
✔	7B52	12017	2023-04-22	2020-12-03	3.8	4.98	—	3.9	0.004	0.84	0.0	0.04	14.20	0.00	2.035	24.47	0.07	16.4	83.4	0.2	-2.23	0.83	0.84	0.97	3.9	0.003	0.72	0.0	0.04	15.17	0.00	2.105	18.54	0.21	13.6	86.3	0.1	-1.29	0.92	0.83	0.83	0.73	13186	1638	1	0	0	0	0	logfile
✔	7WHM	32504	2023-04-21	2021-12-31	2.7	2.86	—	2.8	0.006	0.64	0.0	0.05	13.85	0.00	2.155	6.30	0.00	3.1	96.9	0.0	0.15	0.43	0.87	4.68	2.8	0.003	0.51	0.0	0.04	15.95	0.00	2.260	5.62	0.56	2.3	97.7	0.0	1.45	1.11	0.40	0.84	3.69	9650	1214	1	0	0	0	0	logfile
✔	7NNH	12477	2023-04-20	2021-02-24	4.0	5.15	—	4.2	0.004	1.28	0.0	0.05	15.82	0.01	2.066	35.16	0.34	23.0	76.5	0.5	-3.61	0.74	0.80	—	4.2	0.004	1.05	0.0	0.05	16.94	0.00	2.081	31.82	0.68	20.6	79.1	0.3	-2.70	1.09	0.75	0.80	—	5299	637	1	0	0	0	0	logfile
✔	6ZH4	11213	2023-04-29	2020-06-20	3.62	4.39	3.75	4.0	0.005	0.69	0.0	0.04	14.48	0.00	2.199	14.27	0.03	7.6	92.4	0.0	-0.76	0.89	0.87	1.88	4.0	0.003	0.64	0.0	0.04	15.83	0.00	2.143	11.83	0.25	6.3	93.7	0.0	0.48	0.36	0.88	0.86	1.50	29352	3670	1	0	28	0	0	logfile
✔	6ZH2	11211	2023-04-29	2020-06-20	3.92	4.42	3.96	4.0	0.003	0.66	0.0	0.04	14.54	0.00	2.169	15.46	0.06	7.8	92.1	0.1	-0.24	0.88	0.86	1.25	4.0	0.004	0.68	0.0	0.04	15.92	0.00	2.121	15.00	0.12	6.9	93.0	0.0	0.30	1.50	0.88	0.87	1.09	29313	3676	1	0	28	0	0	logfile
✔	7M68	23690	2023-04-26	2021-03-25	4.04	4.54	4.34	4.5	0.005	0.75	0.0	0.04	13.49	0.00	2.358	1.05	0.60	5.8	94.2	0.0	-0.08	0.51	0.70	—	4.5	0.003	0.57	0.0	0.04	13.42	0.00	2.019	10.54	0.00	7.4	92.6	0.0	-0.76	1.42	0.52	0.73	—	21806	1390	1	0	0	0	10919	logfile
✔	7XW3	33490	2023-04-22	2022-05-26	4.04	4.31	4.11	4.2	0.009	1.24	4.0	0.07	16.20	0.01	2.218	16.13	2.51	8.4	91.5	0.1	-4.09	0.72	0.64	—	4.2	0.003	0.68	0.0	0.04	14.84	0.00	2.117	11.37	0.07	4.3	95.6	0.1	-0.93	1.35	0.71	0.63	—	12081	1502	1	0	0	0	0	logfile
✔	7RoZ	24610	2023-04-20	2021-08-02	3.1	3.60	—	3.3	0.003	0.54	0.0	0.04	13.57	0.01	2.064	11.67	0.00	6.8	93.2	0.0	-1.53	0.82	0.75	2.82	3.3	0.004	0.68	0.0	0.04	15.55	0.00	2.050	14.87	0.39	8.3	91.7	0.0	-1.04	1.16	0.85	0.83	2.86	7774	1064	1	0	1	0	0	logfile
✔	7SAM	24952	2023-04-20	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	13.28	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.007	0.88	0.0	0.04	22.84	0.01	1.820	82.61	0.00	0.0	0.0	0.0	—	5.78	0.96	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	8E27	27827	2023-04-20	2022-08-14	3.4	3.73	3.56	3.7	0.010	1.10	0.0	0.07	14.24	0.01	2.297	2.69	0.34	1.2	98.8	0.0	-0.92	0.71	0.84	2.46	3.7	0.003	0.59	0.0	0.04	15.90	0.00	2.259	5.38	0.17	2.5	97.5	0.0	0.41	0.54	0.69	0.84	2.46	5371	676	1	0	0	0	0	logfile
✔	6RJU	4906	2023-04-19	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	9.8	0.003	0.63	0.0	0.03	15.97	0.00	2.424	6.03	0.00	6.2	93.8	0.0	-0.13	1.31	0.27	0.05	0.48	1992	131	1	0	0	0	997	logfile
✔	7FAS	31505	2023-04-21	2021-07-07	3.6	2.95	—	3.7	0.002	0.52	0.0	0.04	15.63	0.00	2.193	9.10	0.09	4.1	95.9	0.0	0.85	0.72	0.73	0.88	3.7	0.003	0.54	0.0	0.04	17.25	0.00	2.192	9.70	0.18	4.1	95.9	0.0	1.07	0.43	0.73	0.75	0.97	10173	1229	1	0	0	0	0	logfile
✔	7Wo9	32643	2023-04-22	2022-01-20	2.81	3.01	—	3.0	0.002	0.50	0.0	0.04	13.97	0.00	2.227	5.86	0.00	4.2	95.8	0.0	1.49	0.70	0.78	2.04	3.0	0.002	0.51	0.0	0.04	16.20	0.00	2.164	5.55	1.21	4.7	95.3	0.0	1.88	0.74	0.72	0.81	1.85	12743	1581	1	0	0	0	0	logfile
✔	8GoF	34177	2023-04-20	2022-08-24	3.0	2.97	3.06	3.1	0.006	0.80	0.0	0.05	12.71	0.01	2.269	7.05	0.00	2.5	97.5	0.0	-6.52	0.44	0.81	3.59	3.1	0.004	0.58	0.0	0.04	14.49	0.00	2.219	8.85	1.14	2.5	97.5	0.0	1.11	1.48	0.44	0.82	2.90	3299	407	1	0	1	0	0	logfile
✔	7NXF	12638	2023-04-20	2021-03-18	3.1	4.01	3.17	3.6	0.006	0.82	0.0	0.04	14.20	0.01	2.281	9.15	0.00	7.9	92.1	0.0	-0.71	0.60	0.80	1.58	3.7	0.005	0.67	0.0	0.04	15.64	0.00	1.905	9.22	0.44	7.3	92.7	0.0	0.44	1.96	0.59	0.86	1.35	6405	829	1	0	3	0	0	logfile
✔	7Z1H	14446	2023-04-23	2022-02-24	3.12	4.01	—	3.5	0.016	0.97	2.0	0.04	12.32	0.00	1.830	20.25	0.18	10.8	88.7	0.5	-1.31	0.79	0.79	1.28	3.5	0.016	0.94	2.0	0.04	14.23	0.00	1.692	20.59	0.00	11.7	87.9	0.4	-1.08	0.41	0.79	0.77	1.28	15032	1848	1	0	0	0	0	logfile
✔	7Mi6	23841	2023-04-29	2021-04-16	3.9	4.23	3.91	4.0	0.012	1.49	3.0	0.08	13.51	0.01	2.027	6.46	1.32	5.3	94.3	0.4	-2.30	0.84	0.82	1.35	4.0	0.003	0.75	0.0	0.04	16.29	0.00	1.991	14.50	0.14	3.1	96.8	0.0	0.58	1.19	0.85	0.83	1.41	19653	2419	1	0	4	0	0	logfile
✔	7ZZ4	15034	2023-04-20	2022-05-25	2.63	3.04	2.56	2.2	0.008	1.05	0.0	0.05	17.04	0.00	2.035	5.21	0.27	3.3	96.7	0.0	-0.79	0.86	0.84	4.14	2.2	0.003	0.54	0.0	0.04	17.07	0.00	1.948	10.15	1.59	3.7	96.3	0.0	0.70	0.28	0.87	0.85	3.99	3682	463	1	0	3	11	0	logfile
✔	3J9D	6239	2023-04-20	2015-01-09	3.3	2.70	—	3.4	0.027	2.04	0.0	0.08	20.57	0.01	2.034	23.66	24.92	8.2	89.6	2.2	-3.64	0.81	0.89	2.90	3.3	0.022	0.83	0.0	0.04	17.52	0.00	2.197	15.77	0.60	7.4	91.9	0.7	-1.61	2.37	0.75	0.84	2.85	6086	746	1	0	1	0	0	logfile

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