Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5UJA	8560	2022-12-12	2017-01-17	3.34	3.41	3.88	3.4	0.008	1.31	1.0	0.06	13.61	0.00	2.321	0.92	0.00	4.0	96.0	0.0	-3.39	0.49	0.66	2.49	3.3	0.003	0.75	0.0	0.04	16.37	0.00	2.195	12.39	0.39	4.5	95.5	0.0	0.09	1.06	0.57	0.79	1.69	9900	1170	1	0	126	0	0	logfile
✔	6JXC	9893	2022-12-13	2019-04-23	4.1	4.20	—	4.1	0.018	1.71	0.0	0.09	8.99	0.01	2.221	4.88	0.38	9.3	87.7	3.0	-1.28	0.50	0.61	—	4.1	0.003	0.79	0.0	0.04	12.09	0.00	2.114	9.49	0.00	11.6	86.5	1.9	0.33	0.96	0.55	0.69	—	15270	2345	1	0	0	0	0	logfile
✔	5W81	8782	2022-12-12	2017-06-21	3.37	3.79	—	3.9	0.008	1.26	1.0	0.06	13.30	0.00	1.940	1.47	0.00	5.1	94.9	0.0	-3.11	0.45	0.60	0.57	3.8	0.003	0.70	0.0	0.04	16.92	0.00	1.895	8.05	0.30	3.2	96.7	0.1	0.15	1.56	0.57	0.82	1.39	9393	1173	1	0	4	0	0	logfile
✔	6X13	21987	2022-12-11	2020-05-18	3.66	3.77	—	3.8	0.007	1.04	1.0	0.05	16.27	0.01	2.340	4.80	0.31	6.5	93.5	0.0	-3.73	0.64	0.84	1.86	3.8	0.003	0.66	0.0	0.04	15.85	0.00	2.290	10.07	0.00	5.1	94.9	0.0	1.68	0.43	0.64	0.83	1.50	3136	417	1	0	1	0	0	logfile
✔	6KLC	0706	2022-12-12	2019-07-30	3.9	3.97	—	3.9	0.003	0.70	0.0	0.04	13.24	0.00	2.198	11.06	0.64	9.3	90.5	0.2	-3.27	0.73	0.77	1.53	3.9	0.004	0.81	0.0	0.05	16.14	0.00	2.094	13.94	0.56	10.2	89.8	0.1	-0.58	1.54	0.74	0.78	1.11	11210	1436	1	0	1	0	0	logfile
✔	7BWM	30233	2022-12-14	2020-04-15	2.9	2.97	—	2.9	0.005	0.78	0.0	0.05	14.21	0.00	2.048	7.48	7.21	5.8	94.0	0.3	-3.28	0.76	0.85	4.49	2.9	0.003	0.62	0.0	0.04	15.48	0.00	2.141	7.42	2.14	5.0	94.9	0.1	-0.84	1.13	0.79	0.87	3.50	9532	1219	1	0	0	0	0	logfile
✔	6FU8	4319	2022-12-11	2018-02-26	3.2	4.43	2.97	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.003	0.82	0.0	0.04	14.91	0.00	2.261	15.40	0.00	10.0	88.8	1.2	-1.84	3.11	0.23	0.62	-0.89	1364	82	1	0	0	0	711	logfile
✔	6N9Y	0383	2022-12-11	2018-12-04	4.0	3.80	—	3.7	0.008	1.10	0.0	0.05	10.30	0.01	2.229	5.13	0.42	9.1	90.9	0.0	-4.98	0.38	0.73	—	3.7	0.003	0.69	0.0	0.04	15.57	0.00	2.155	14.28	0.00	8.9	91.1	0.0	-1.04	1.76	0.40	0.78	—	4527	552	1	0	0	0	0	logfile
✔	6XLY	22252	2022-12-11	2020-06-29	3.1	4.00	3.11	3.5	0.006	0.95	0.0	0.05	15.47	0.01	2.336	4.00	0.97	4.3	95.7	0.0	-5.77	0.86	0.77	1.71	3.6	0.003	0.60	0.0	0.04	15.59	0.00	2.157	11.49	0.00	3.0	97.0	0.0	0.53	0.56	0.88	0.84	1.47	5111	646	1	0	1	0	0	logfile
✔	7K1V	22630	2022-12-11	2020-09-08	4.6	4.95	—	4.8	0.008	1.12	0.0	0.06	15.77	0.01	2.159	13.77	0.40	11.0	89.0	0.0	-4.04	0.71	0.71	—	4.8	0.003	0.72	0.0	0.04	13.85	0.00	2.080	20.14	0.00	6.3	93.7	0.0	-1.06	2.36	0.70	0.75	—	4971	626	1	0	0	0	0	logfile
✘	6LQA	0942	2022-12-18	2020-01-13	3.3	3.51	—	3.5	0.008	1.28	0.0	0.07	14.15	0.01	1.369	15.42	6.02	7.8	91.4	0.9	-4.09	0.56	0.77	2.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9387	1151	1	0	10	0	0	logfile
✔	7DTC	30850	2022-12-12	2021-01-04	3.3	3.73	—	3.6	0.004	0.68	0.0	0.04	14.07	0.00	2.201	12.28	0.49	7.9	91.6	0.4	-3.34	0.52	0.80	1.81	3.5	0.003	0.76	0.0	0.04	16.08	0.00	2.219	10.80	0.39	7.9	92.1	0.1	0.31	1.35	0.54	0.82	1.46	9363	1151	1	0	9	0	0	logfile
✔	6D3R	7793	2022-12-11	2018-04-16	4.3	4.80	4.40	4.5	0.017	1.75	0.0	0.10	9.07	0.01	2.385	0.71	0.00	1.5	98.5	0.0	0.66	0.66	0.76	—	4.6	0.003	0.63	0.0	0.04	11.99	0.00	2.245	7.92	0.00	2.6	97.4	0.0	1.98	1.20	0.67	0.77	—	7610	1127	1	0	2	0	0	logfile
✔	7KTT	23029	2022-12-11	2020-11-24	4.17	4.46	—	4.2	0.007	1.04	0.0	0.06	13.23	0.01	2.239	12.66	0.25	5.7	94.3	0.0	-5.41	0.81	0.78	—	4.2	0.005	0.80	0.0	0.05	13.89	0.00	2.090	25.26	0.00	4.9	95.1	0.0	-0.30	0.68	0.81	0.77	—	7568	994	1	0	0	0	0	logfile
✔	3JBS	6478	2022-12-11	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.1	0.003	0.63	0.0	0.04	17.65	0.00	2.262	7.24	1.97	1.7	98.3	0.0	1.01	1.32	0.21	0.80	3.18	1401	175	1	0	0	0	0	logfile
✔	6UES	20755	2022-12-11	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.10	0.01	1.792	36.17	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	6UWF	20922	2022-12-11	2019-11-05	3.08	3.26	—	3.3	0.008	1.08	0.0	0.05	16.40	0.01	2.294	2.14	0.00	3.1	96.9	0.0	-3.86	0.70	0.85	2.48	3.3	0.003	0.59	0.0	0.04	15.19	0.00	2.243	6.27	0.92	3.1	96.9	0.0	0.94	0.31	0.67	0.85	2.48	3178	417	1	0	2	0	0	logfile
✔	6JNC	9847	2022-12-11	2019-03-14	3.7	3.76	—	3.8	0.009	0.87	0.0	0.05	14.72	0.01	2.304	3.48	9.09	4.8	95.2	0.0	-5.69	0.46	0.78	1.61	3.8	0.005	0.61	0.0	0.05	15.66	0.00	2.291	5.00	0.00	4.6	95.4	0.0	-1.11	1.56	0.52	0.89	2.22	3294	419	1	0	1	0	0	logfile
✔	7NUR	12600	2022-12-12	2021-03-13	3.125	3.29	—	3.3	0.007	0.77	0.0	0.05	14.31	0.01	2.174	5.26	0.11	7.7	92.0	0.3	-4.11	0.77	0.87	3.09	3.3	0.004	0.65	0.0	0.04	15.97	0.00	2.226	4.65	0.57	6.4	93.5	0.1	-0.35	1.29	0.74	0.87	2.31	8245	1044	1	0	0	0	0	logfile
✔	7ASK	11895	2022-12-12	2020-10-27	4.3	4.39	—	4.3	0.028	2.98	47.0	0.22	18.83	0.02	0.766	14.33	2.58	16.8	73.5	9.7	-6.06	0.17	0.51	—	4.3	0.021	1.32	2.0	0.05	15.46	0.01	2.042	17.93	0.00	18.5	80.0	1.5	-3.37	1.32	0.19	0.60	—	12285	1523	1	0	2	0	0	logfile

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