Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6UES	20755	2022-07-03	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.10	0.01	1.792	36.17	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✘	5X0M	6698	2022-07-03	2017-01-21	3.8	3.85	—	3.9	0.008	1.37	2.0	0.06	20.84	0.01	1.915	54.20	11.48	12.9	81.9	5.2	-5.95	0.39	0.57	0.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10654	1323	1	0	20	0	0	logfile
✘	6NT3	0500	2022-07-03	2019-01-28	3.4	3.96	3.65	3.9	0.008	1.11	0.0	0.12	16.57	0.01	1.308	11.42	0.53	13.2	86.3	0.5	-4.75	0.50	0.79	1.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10934	1278	1	0	20	0	0	logfile
✔	5M5H	4155	2022-07-02	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.94	0.0	0.05	12.39	0.01	2.260	21.55	0.00	7.9	92.1	0.0	-1.85	2.19	0.15	0.14	—	1086	132	1	0	0	0	0	logfile
✔	5W1R	8751	2022-07-05	2017-06-04	4.4	4.48	—	4.4	0.006	1.21	2.0	0.06	14.97	0.01	1.238	42.76	1.30	15.6	79.1	5.4	-5.31	0.66	0.69	—	4.4	0.003	0.89	0.0	0.04	13.31	0.01	2.078	13.63	0.00	10.0	89.2	0.7	-1.80	1.16	0.66	0.68	—	25559	3563	1	0	0	0	0	logfile
✔	6i26	0328	2022-07-05	2018-10-31	4.3	4.37	—	4.2	0.005	0.89	0.0	0.05	8.22	0.01	0.411	6.12	0.50	6.4	93.3	0.3	-6.25	0.75	0.60	—	4.2	0.003	0.68	0.0	0.04	10.67	0.00	2.211	6.17	0.00	6.6	93.4	0.0	0.06	0.98	0.82	0.75	—	22765	3366	1	0	221	0	0	logfile
✘	5A7U	3079	2022-07-02	2015-07-10	4.8	3.82	—	4.6	0.020	3.41	3.0	0.25	21.78	0.08	2.651	30.77	25.00	24.0	72.0	4.0	-6.05	-0.01	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	1	0	1	0	231	logfile
✔	6TAY	10430	2022-07-07	2019-10-31	3.2	2.55	—	2.9	0.011	1.15	0.0	0.06	11.27	0.01	2.066	4.68	0.28	8.9	91.0	0.1	-3.72	0.86	0.82	3.85	2.9	0.005	0.74	0.0	0.04	14.00	0.01	1.969	9.53	0.08	7.4	92.6	0.0	0.15	1.17	0.87	0.83	2.52	35241	4350	1	0	71	0	0	logfile
✔	6UET	20756	2022-07-03	2019-09-23	4.1	4.91	—	5.1	0.010	1.58	0.0	0.07	17.24	0.02	1.977	4.64	0.00	0.0	0.0	0.0	—	0.62	0.73	—	5.0	0.007	0.97	0.0	0.05	22.75	0.01	1.773	50.21	0.00	0.0	0.0	0.0	—	0.77	0.66	0.81	—	3869	0	1	119	1	0	1291	logfile
✔	5LY6	4118	2022-07-03	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.004	0.81	0.0	0.04	13.96	0.00	2.167	15.68	0.24	10.2	89.3	0.4	-2.62	3.61	0.40	0.77	—	3725	471	1	0	0	0	0	logfile
✔	6KZP	0792	2022-07-03	2019-09-25	3.1	2.67	—	3.1	0.013	1.45	1.0	0.08	14.32	0.01	2.390	10.39	2.44	3.3	96.4	0.3	-4.53	0.59	0.81	3.72	3.1	0.003	0.61	0.0	0.04	16.37	0.00	2.316	5.17	0.11	2.9	97.1	0.0	1.33	0.68	0.59	0.82	2.38	8557	1014	1	0	18	0	0	logfile
✔	7LCK	23276	2022-07-02	2021-01-11	3.24	3.84	3.15	3.6	0.008	1.05	4.0	0.07	14.23	0.01	2.160	7.79	1.16	6.7	93.3	0.0	-0.93	0.69	0.79	2.21	3.7	0.003	0.62	0.0	0.04	15.17	0.00	2.228	4.83	0.58	4.1	95.9	0.0	0.64	0.55	0.66	0.79	2.04	3258	390	1	0	1	11	0	logfile
✔	6DMo	7964	2022-07-03	2018-06-05	4.1	4.16	—	4.1	0.008	1.26	0.0	0.06	13.66	0.01	1.764	8.97	2.78	11.1	88.6	0.3	-4.11	0.55	0.64	—	4.1	0.004	0.87	0.0	0.05	13.51	0.00	2.132	16.15	0.00	10.5	89.5	0.0	-0.53	1.27	0.59	0.72	—	7853	982	1	0	7	0	0	logfile
✔	5UAR	8461	2022-07-03	2016-12-19	3.73	4.36	—	4.4	0.008	1.18	0.0	0.06	13.30	0.00	2.393	0.36	1.06	7.4	92.5	0.1	-3.58	0.58	0.77	1.39	4.3	0.003	0.73	0.0	0.04	16.17	0.00	2.132	11.10	0.48	4.4	95.6	0.0	-0.31	1.53	0.61	0.79	0.88	9489	1184	1	0	2	0	0	logfile
✘	5UJA	8560	2022-07-03	2017-01-17	3.34	3.41	3.88	3.4	0.008	1.16	1.0	0.06	13.05	0.00	1.183	0.92	0.00	4.0	96.0	0.0	-3.39	0.49	0.66	2.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9900	1170	1	0	126	0	0	logfile
✔	6BHU	7099	2022-07-03	2017-10-31	3.14	3.58	3.62	3.7	0.008	1.22	0.0	0.06	12.26	0.00	1.915	0.69	0.00	3.7	96.3	0.0	-1.76	0.48	0.69	2.60	3.7	0.003	0.59	0.0	0.04	15.33	0.00	1.999	5.42	0.47	2.0	98.0	0.0	1.76	0.74	0.58	0.83	1.52	10273	1208	1	0	127	0	0	logfile
✔	6oEU	7795	2022-07-03	2019-03-27	3.5	3.62	—	3.9	0.014	1.89	3.0	0.11	15.00	0.00	2.157	5.92	0.85	10.3	89.6	0.1	-3.81	0.41	0.65	1.69	3.7	0.014	1.42	0.0	0.04	16.64	0.01	1.735	14.70	0.28	8.5	91.4	0.1	-0.52	1.53	0.47	0.69	0.92	7310	964	1	0	8	0	0	logfile
✔	6XJB	22205	2022-07-03	2020-06-23	3.8	4.06	—	3.9	0.002	0.56	0.0	0.04	13.15	0.00	2.165	9.70	0.00	8.6	91.4	0.0	-3.06	0.88	0.82	1.76	3.9	0.005	0.69	0.0	0.04	15.37	0.00	2.075	14.28	0.46	8.2	91.8	0.0	-1.64	1.83	0.88	0.86	2.01	10070	1277	1	0	0	0	0	logfile
✔	7LCJ	23275	2022-07-02	2021-01-11	2.82	3.02	2.78	3.1	0.011	1.19	3.0	0.08	13.36	0.01	2.216	8.73	1.16	3.9	96.1	0.0	0.54	0.46	0.80	2.75	3.1	0.002	0.48	0.0	0.03	15.51	0.00	2.257	4.36	0.58	1.8	98.2	0.0	1.56	1.69	0.49	0.82	2.84	3264	390	1	0	1	17	0	logfile
✔	7DCQ	30639	2022-07-03	2020-10-26	2.9	3.09	—	3.1	0.006	0.95	1.0	0.06	10.61	0.01	2.378	4.74	0.85	4.1	95.9	0.0	-3.49	0.70	0.81	4.02	3.1	0.004	0.68	0.0	0.05	15.67	0.01	2.325	8.62	2.39	4.1	95.9	0.0	0.79	0.63	0.70	0.83	2.88	5197	653	1	0	0	0	0	logfile

• ← previous
• Page 5 of 392
• next →