Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6UET	20756	2022-05-12	2019-09-23	4.1	4.91	—	5.1	0.010	1.58	0.0	0.07	17.24	0.02	1.977	4.64	0.00	0.0	0.0	0.0	—	0.62	0.73	—	5.0	0.007	0.97	0.0	0.05	22.75	0.01	1.773	50.21	0.00	0.0	0.0	0.0	—	0.77	0.66	0.81	—	3869	0	1	119	1	0	1291	logfile
✔	5LY6	4118	2022-05-12	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.004	0.81	0.0	0.04	13.96	0.00	2.167	15.68	0.24	10.2	89.3	0.4	-2.62	3.61	0.40	0.77	—	3725	471	1	0	0	0	0	logfile
✔	5YWD	6853	2022-05-13	2017-11-29	4.2	4.38	4.11	4.2	0.003	0.73	0.0	0.04	14.12	0.00	2.031	12.08	6.20	4.1	95.9	0.0	-1.54	0.62	0.74	—	4.2	0.003	0.77	0.0	0.04	13.42	0.00	1.924	14.05	0.00	3.8	96.2	0.0	1.24	1.51	0.65	0.77	—	8997	1154	1	0	4	0	0	logfile
✔	6L42	0828	2022-05-13	2019-10-15	3.4	3.83	—	3.8	0.006	2.50	84.0	0.16	15.34	0.01	1.354	33.14	2.82	10.0	89.4	0.7	-5.07	0.80	0.77	1.31	3.7	0.004	0.90	0.0	0.05	16.54	0.01	2.098	14.55	0.43	11.7	88.2	0.1	-2.53	0.82	0.82	0.82	1.18	14797	1858	1	0	1	0	0	logfile
✔	6DMo	7964	2022-05-12	2018-06-05	4.1	4.16	—	4.1	0.008	1.26	0.0	0.06	13.66	0.01	1.764	8.97	2.78	11.1	88.6	0.3	-4.11	0.55	0.64	—	4.1	0.004	0.87	0.0	0.05	13.51	0.00	2.132	16.15	0.00	10.5	89.5	0.0	-0.53	1.27	0.59	0.72	—	7853	982	1	0	7	0	0	logfile
✔	6HYD	0308	2022-05-13	2018-10-19	3.9	4.01	—	4.0	0.004	0.85	0.0	0.05	9.33	0.01	2.319	2.63	0.24	5.7	94.0	0.3	-6.69	0.74	0.77	2.59	4.0	0.003	0.69	0.0	0.04	14.49	0.00	2.163	5.59	0.24	5.8	94.0	0.2	-1.37	1.74	0.77	0.80	1.55	12168	1543	1	0	31	0	0	logfile
✘	6JND	9848	2022-05-12	2019-03-14	3.9	3.92	—	3.9	0.006	0.82	0.0	0.05	15.64	0.01	2.316	4.09	11.73	5.8	94.2	0.0	-5.73	0.43	0.77	1.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3294	419	1	0	1	0	0	logfile
✔	5V7V	8642	2022-05-13	2017-03-20	3.9	3.88	—	3.8	0.011	1.19	1.0	0.06	12.64	0.01	1.713	18.52	0.00	11.2	88.7	0.2	-4.92	0.55	0.69	1.61	3.8	0.003	0.65	0.0	0.04	15.80	0.00	1.965	15.13	0.57	9.4	90.6	0.0	-1.01	1.02	0.61	0.78	0.54	9919	613	1	0	9	0	4811	logfile
✔	5YW7	6847	2022-05-12	2017-11-29	4.4	4.45	4.13	4.3	0.004	0.71	1.0	0.05	13.01	0.01	2.246	14.02	6.49	4.3	95.7	0.0	-2.58	0.70	0.79	—	4.3	0.003	0.70	0.0	0.04	13.00	0.00	2.220	12.04	0.00	3.0	97.0	0.0	0.73	1.83	0.71	0.80	—	8944	1140	1	0	2	0	0	logfile
✘	6L53	0836	2022-05-13	2019-10-22	3.63	3.79	—	3.7	0.002	0.67	0.0	0.04	9.71	0.00	2.193	8.74	3.49	9.8	89.9	0.3	-4.90	0.77	0.70	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13991	1935	1	0	0	0	0	logfile
✔	6DMB	7963	2022-05-12	2018-06-04	3.9	4.13	—	4.0	0.009	1.35	0.0	0.07	13.32	0.01	2.266	6.34	1.94	13.2	86.2	0.6	-4.55	0.61	0.78	2.39	4.0	0.005	0.88	0.0	0.05	15.88	0.01	2.132	13.63	1.46	13.6	86.4	0.0	-0.90	1.80	0.63	0.79	0.87	7945	990	1	0	9	0	0	logfile
✔	3JBS	6478	2022-05-12	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.004	0.63	0.0	0.04	18.27	0.00	2.222	7.93	3.29	1.7	98.3	0.0	0.83	1.30	0.22	0.81	3.95	1401	175	1	0	0	0	0	logfile
✔	6TAY	10430	2022-05-17	2019-10-31	3.2	2.55	—	2.9	0.011	1.15	0.0	0.06	11.27	0.01	2.066	4.68	0.28	8.9	91.0	0.1	-3.72	0.86	0.82	3.85	2.9	0.005	0.74	0.0	0.04	14.00	0.01	1.969	9.53	0.08	7.4	92.6	0.0	0.15	1.17	0.87	0.83	2.52	35241	4350	1	0	71	0	0	logfile
✔	5M5H	4155	2022-05-12	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.94	0.0	0.05	12.39	0.01	2.260	21.55	0.00	7.9	92.1	0.0	-1.85	2.19	0.15	0.14	—	1086	132	1	0	0	0	0	logfile
✔	6S7P	10111	2022-05-13	2019-07-05	3.2	3.38	—	3.4	0.009	1.13	0.0	0.08	10.36	0.01	2.085	3.44	0.33	2.8	97.2	0.0	-3.03	0.65	0.83	4.30	3.4	0.003	0.54	0.0	0.04	14.19	0.00	1.992	5.56	0.22	2.0	98.0	0.0	1.12	0.54	0.65	0.85	2.61	9028	1128	1	0	11	0	0	logfile
✔	6i5A	4413	2022-05-12	2018-11-13	2.3	2.34	1.50	2.3	0.012	1.84	1.0	0.10	14.16	0.01	2.431	6.70	0.74	1.3	97.4	1.3	-0.89	0.26	0.84	3.95	2.3	0.003	0.54	0.0	0.04	16.64	0.00	2.349	2.93	4.44	2.0	98.0	0.0	2.46	1.23	0.30	0.88	4.22	1206	153	1	0	0	0	0	logfile
✔	6oEU	7795	2022-05-12	2019-03-27	3.5	3.62	—	3.9	0.014	1.89	3.0	0.11	15.00	0.00	2.157	5.92	0.85	10.3	89.6	0.1	-3.81	0.41	0.65	1.69	3.7	0.014	1.42	0.0	0.04	16.64	0.01	1.735	14.70	0.28	8.5	91.4	0.1	-0.52	1.53	0.47	0.69	0.92	7310	964	1	0	8	0	0	logfile
✘	5A7U	3079	2022-05-12	2015-07-10	4.8	3.82	—	4.6	0.020	3.41	3.0	0.25	21.78	0.08	2.651	30.77	25.00	24.0	72.0	4.0	-6.05	-0.01	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	1	0	1	0	231	logfile
✔	7JGD	22323	2022-05-14	2020-07-19	3.38	3.68	—	3.6	0.002	0.43	0.0	0.05	12.94	0.00	2.123	11.53	0.00	3.9	96.1	0.0	1.18	0.61	0.66	2.22	3.6	0.013	0.97	1.0	0.06	14.97	0.00	2.037	14.65	0.08	7.3	92.7	0.0	0.39	0.47	0.64	0.72	1.77	20292	1435	1	0	0	0	8505	logfile
✔	7KTW	23032	2022-05-12	2020-11-24	4.27	4.73	—	4.4	0.007	1.12	0.0	0.05	12.46	0.01	2.214	14.28	0.12	5.1	94.9	0.0	-4.61	0.81	0.82	—	4.4	0.003	0.79	0.0	0.04	13.24	0.00	2.137	19.56	0.12	3.3	96.7	0.0	0.47	0.94	0.80	0.80	—	7577	995	1	0	0	0	0	logfile

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