Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8HJ9	34835	2023-08-09	2022-11-22	3.12	3.29	3.00	3.2	0.004	0.65	0.0	0.04	15.54	0.00	2.234	10.94	0.00	2.7	97.3	0.0	1.80	0.43	0.76	3.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3274	416	1	0	1	0	0	logfile
✔	7YAM	33717	2023-08-10	2022-06-28	3.3	3.46	3.26	3.4	0.003	0.53	0.0	0.04	14.47	0.00	1.756	6.05	0.13	1.6	98.4	0.0	1.95	0.70	0.80	2.17	3.4	0.006	0.60	0.0	0.04	16.18	0.00	1.860	8.63	0.40	2.3	97.7	0.0	1.41	0.42	0.69	0.83	1.72	6672	871	1	0	2	0	0	logfile
✔	7K8D	22728	2023-08-12	2020-09-26	4.33	4.48	—	4.7	0.004	1.12	0.0	0.06	12.53	0.01	2.205	23.61	1.86	4.3	95.7	0.0	-2.98	0.33	0.40	—	4.6	0.003	0.80	0.0	0.04	13.50	0.01	2.094	15.68	0.00	4.9	95.1	0.0	0.82	1.46	0.41	0.49	—	5529	725	1	0	0	0	0	logfile
✔	7XUN	33475	2023-08-09	2022-05-19	3.4	3.91	3.41	3.8	0.002	0.57	0.0	0.04	13.72	0.00	2.129	11.02	0.00	4.1	95.9	0.0	-0.92	0.72	0.76	0.33	3.8	0.003	0.72	0.0	0.05	15.95	0.00	2.159	12.95	0.33	4.9	95.1	0.0	-0.13	1.11	0.72	0.77	0.22	5591	741	1	0	0	0	0	logfile
✔	6SKZ	10232	2023-08-16	2019-08-16	3.4	3.55	—	3.5	0.011	0.82	1.0	0.05	14.81	0.01	1.872	8.66	5.39	7.4	92.5	0.1	-3.09	0.72	0.81	1.81	3.5	0.003	0.60	0.0	0.04	16.15	0.00	2.146	7.38	0.35	4.4	95.6	0.0	1.33	0.75	0.73	0.84	1.72	20930	2638	1	0	2	0	0	logfile
✔	7YiM	33861	2023-08-09	2022-07-17	2.6	2.93	2.77	2.9	0.013	1.14	0.0	0.07	15.89	0.01	2.272	6.72	0.78	4.9	95.1	0.0	-4.17	0.67	0.68	1.25	2.9	0.003	0.64	0.0	0.04	17.74	0.00	2.221	10.52	2.52	3.4	96.6	0.0	0.68	1.25	0.64	0.66	1.25	4657	592	1	0	0	0	0	logfile
✔	7K8C	22726	2023-08-12	2020-09-26	4.27	4.22	—	4.2	0.004	0.84	2.0	0.05	13.70	0.01	2.196	12.83	0.85	3.2	96.8	0.0	0.14	0.47	0.56	—	4.2	0.003	0.84	0.0	0.04	13.41	0.01	2.150	15.24	0.17	4.0	96.0	0.0	0.61	0.60	0.50	0.61	—	5524	723	1	0	0	0	0	logfile
✔	5G2Y	3332	2023-08-13	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	11.90	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.02	0.0	0.05	23.60	0.01	1.933	73.59	0.00	0.0	0.0	0.0	—	2.96	0.89	0.78	—	13494	0	1	630	0	0	0	logfile
✔	6WYJ	21966	2023-08-09	2020-05-13	3.7	3.74	—	3.8	0.010	0.64	0.0	0.05	12.33	0.00	2.268	5.08	0.00	5.3	94.7	0.0	-4.80	0.59	0.78	4.37	3.8	0.003	0.59	0.0	0.04	14.52	0.00	2.333	5.74	0.00	1.8	98.2	0.0	2.16	0.60	0.63	0.80	1.47	2949	398	1	0	0	0	0	logfile
✔	7MPE	23932	2023-08-12	2021-05-04	3.2	3.91	—	3.8	0.005	0.69	0.0	0.04	14.10	0.00	2.174	14.62	0.00	6.9	93.1	0.0	-2.52	0.62	0.77	2.09	3.8	0.003	0.64	0.0	0.04	15.96	0.00	2.092	11.91	0.41	5.5	94.5	0.0	-0.53	1.11	0.61	0.76	1.30	11214	1428	1	0	0	0	0	logfile
✔	7K8B	22725	2023-08-09	2020-09-26	2.94	2.86	—	3.1	0.005	0.83	2.0	0.05	14.13	0.01	2.214	14.30	0.68	5.5	94.5	0.0	-0.97	0.41	0.61	1.17	3.1	0.005	0.89	0.0	0.05	17.17	0.01	2.075	18.75	5.07	6.4	93.6	0.0	-0.82	1.19	0.42	0.65	0.86	5543	726	1	0	0	0	0	logfile
✔	6X12	21986	2023-08-09	2020-05-18	3.52	3.69	—	3.7	0.008	1.08	0.0	0.06	15.87	0.01	2.322	3.01	0.00	2.7	97.3	0.0	-5.29	0.65	0.84	1.43	3.7	0.003	0.67	0.0	0.04	15.88	0.00	2.262	7.77	0.63	2.7	97.3	0.0	0.14	1.20	0.66	0.84	1.26	3059	407	1	0	1	0	0	logfile
✔	7R9U	24331	2023-08-10	2021-06-29	4.4	5.41	—	4.3	0.002	0.34	0.0	0.04	4.36	0.00	2.248	3.50	0.00	9.1	90.3	0.6	-4.49	0.78	0.62	—	4.3	0.002	0.50	0.0	0.04	8.43	0.00	2.006	8.03	0.00	2.6	97.4	0.0	0.60	2.37	0.91	0.84	—	7727	505	1	0	0	0	3939	logfile
✔	8FD5	29002	2023-08-09	2022-12-02	4.57	4.19	—	10.0	0.016	2.15	4.0	0.13	13.14	0.02	2.541	0.16	0.29	3.8	96.2	0.0	-1.38	0.28	0.02	—	3.5	0.004	0.81	0.0	0.04	13.27	0.01	2.112	15.37	0.00	6.2	93.8	0.0	-1.75	1.59	0.40	0.17	—	3214	419	1	0	0	0	0	logfile
✔	6X13	21987	2023-08-09	2020-05-18	3.66	3.77	—	3.8	0.007	1.04	1.0	0.05	16.27	0.01	2.340	4.80	0.31	6.5	93.5	0.0	-3.73	0.64	0.84	1.86	3.8	0.003	0.66	0.0	0.04	16.00	0.00	2.254	8.98	0.00	5.3	94.7	0.0	1.35	0.42	0.64	0.84	1.86	3136	417	1	0	1	0	0	logfile
✔	6HYP	0309	2023-08-12	2018-10-22	4.4	4.53	—	4.4	0.003	0.72	0.0	0.05	8.72	0.00	1.943	1.67	0.34	7.3	92.2	0.4	-5.99	0.75	0.69	—	4.4	0.004	0.79	0.0	0.04	8.88	0.00	1.995	5.56	0.00	13.4	86.3	0.2	-1.62	0.63	0.77	0.75	—	12392	2082	1	0	192	0	0	logfile
✔	6YV1	10940	2023-08-09	2020-04-27	3.4	4.09	3.01	3.7	0.002	0.58	0.0	0.04	12.66	0.00	2.272	8.02	1.85	1.0	99.0	0.0	-4.45	0.52	0.76	1.48	3.7	0.003	0.65	0.0	0.04	13.97	0.00	2.248	6.45	0.00	2.2	97.8	0.0	1.32	0.60	0.50	0.86	1.34	2496	328	1	0	0	0	0	logfile
✔	7ZH0	14716	2023-08-09	2022-04-05	3.2	3.63	3.07	3.5	0.004	0.72	0.0	0.04	13.97	0.01	2.191	14.27	0.24	6.0	94.0	0.0	1.08	0.65	0.75	3.58	3.5	0.003	0.68	0.0	0.04	16.34	0.00	2.220	14.02	0.73	5.5	94.3	0.2	1.04	0.51	0.67	0.77	2.84	3869	495	1	0	0	0	0	logfile
✔	8B0o	15790	2023-08-10	2022-09-07	3.02	3.35	3.12	3.3	0.009	0.70	0.0	0.04	11.13	0.02	2.255	6.96	0.00	6.0	94.0	0.0	-0.78	0.58	0.84	4.68	3.3	0.003	0.57	0.0	0.04	14.81	0.00	2.214	7.97	0.00	6.3	93.7	0.0	-0.37	0.90	0.56	0.85	3.89	3995	506	1	0	1	0	0	logfile
✔	8B0M	15788	2023-08-10	2022-09-07	3.01	3.39	3.03	3.3	0.003	0.66	0.0	0.04	10.77	0.00	2.258	5.92	0.48	5.7	94.3	0.0	-0.18	0.57	0.84	5.07	3.3	0.003	0.56	0.0	0.04	13.28	0.00	2.239	6.42	0.00	5.9	94.1	0.0	0.50	1.70	0.58	0.86	4.35	4015	508	1	0	1	0	0	logfile

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