Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NH9	12321	2023-11-15	2021-02-10	3.03	3.58	—	3.4	0.007	0.80	0.0	0.04	14.80	0.00	2.236	12.71	3.31	11.7	88.3	0.0	-2.35	0.75	0.84	2.46	3.4	0.003	0.66	0.0	0.04	16.04	0.00	2.252	11.90	0.07	9.2	90.8	0.0	0.93	0.52	0.76	0.86	2.43	13120	1635	5	0	0	0	0	logfile
✔	6DRJ	7999	2023-11-21	2018-06-12	3.3	3.80	—	3.7	0.007	1.13	8.0	0.07	10.90	0.01	2.093	5.57	0.14	4.4	95.6	0.0	-3.18	0.67	0.79	1.95	3.7	0.002	0.59	0.0	0.04	14.03	0.00	2.183	4.74	0.39	2.7	97.3	0.0	0.35	1.22	0.68	0.82	1.64	35516	5064	8	0	8	0	0	logfile
✔	7JYi	22526	2023-11-14	2020-08-30	3.4	3.52	—	3.5	0.008	0.75	0.0	0.05	16.05	0.00	2.104	14.16	5.45	10.3	89.2	0.5	-4.54	0.43	0.84	2.04	3.5	0.004	0.69	0.0	0.04	16.64	0.00	2.112	8.81	0.42	8.4	91.4	0.2	-1.77	0.66	0.40	0.85	2.23	8807	1152	4	0	0	0	0	logfile
✔	6CNM	7537	2023-11-15	2018-03-08	3.4	3.51	—	3.5	0.010	1.11	0.0	0.06	10.53	0.01	2.331	1.47	0.00	4.3	95.7	0.0	-4.29	0.64	0.84	3.41	3.5	0.002	0.53	0.0	0.04	13.55	0.00	2.202	3.43	0.09	2.9	97.1	0.0	2.24	0.56	0.63	0.85	2.35	12541	1700	12	0	17	0	0	logfile
✔	6PiG	20350	2023-11-20	2019-06-26	3.5	3.54	3.59	3.5	0.014	1.76	1.0	0.09	16.07	0.00	2.173	1.98	1.58	15.2	81.4	3.5	-4.85	0.60	0.76	2.54	3.5	0.003	0.79	0.0	0.04	17.26	0.01	2.067	11.20	0.36	14.8	84.7	0.5	-2.91	0.60	0.65	0.79	2.18	28867	3439	11	60	0	0	0	logfile
✔	6R8F	4759	2023-11-16	2019-04-01	3.8	3.84	3.74	3.8	0.013	1.15	0.0	0.07	10.25	0.01	2.059	3.60	0.00	11.0	89.0	0.0	-5.94	0.78	0.80	3.13	3.8	0.003	0.67	0.0	0.04	14.82	0.00	1.955	9.45	0.60	6.7	93.3	0.0	-1.02	1.36	0.79	0.80	2.19	15810	2000	10	0	166	0	0	logfile
✔	6WMU	21853	2023-11-21	2020-04-21	3.18	3.31	—	3.3	0.016	1.01	1.0	0.06	18.72	0.01	2.066	21.25	9.93	11.7	88.0	0.3	-3.75	0.66	0.77	1.72	3.3	0.007	0.75	0.0	0.05	18.88	0.01	2.116	12.62	0.43	7.9	91.9	0.1	-0.68	0.72	0.72	0.85	2.00	34094	4121	13	86	3	0	0	logfile
✔	7YDi	33748	2023-11-15	2022-07-04	3.98	3.84	3.72	3.8	0.003	0.70	0.0	0.05	14.65	0.00	1.938	5.91	0.67	3.8	96.2	0.0	-0.82	0.64	0.62	0.76	3.8	0.003	0.67	0.0	0.04	16.20	0.00	2.160	11.46	0.19	4.5	95.5	0.0	0.03	1.69	0.72	0.73	1.14	9675	1229	5	0	5	0	0	logfile
✔	6S85	10116	2023-11-17	2019-07-08	4.2	4.30	—	4.2	0.008	1.01	3.0	0.06	19.02	0.01	1.775	18.62	1.03	7.8	91.9	0.3	-3.59	0.84	0.82	—	4.1	0.006	0.75	0.0	0.04	18.02	0.00	1.864	17.99	0.00	7.2	92.7	0.1	-1.02	1.02	0.84	0.83	—	13018	1486	10	63	8	0	0	logfile
✔	3J81	2763	2023-11-20	2014-08-29	4.0	4.19	—	4.0	0.007	1.30	64.0	0.10	22.05	0.01	1.076	7.72	12.47	11.6	83.5	4.9	-2.31	0.79	0.84	—	4.0	0.004	0.80	0.0	0.04	20.75	0.01	1.810	24.19	0.84	11.1	87.5	1.4	-1.88	2.08	0.79	0.82	—	83760	5686	48	1876	84	0	0	logfile
✔	7oL0	12974	2023-11-21	2021-05-18	3.0	2.88	2.88	2.9	0.010	0.88	0.0	0.06	15.67	0.01	2.073	6.01	0.06	3.0	97.0	0.0	-1.45	0.73	0.84	3.95	2.9	0.005	0.59	0.0	0.04	17.77	0.00	1.964	9.87	1.24	2.6	97.4	0.0	0.33	0.39	0.74	0.87	3.32	32892	3912	22	79	9	0	0	logfile
✔	6X4W	22043	2023-11-22	2020-05-24	3.8	4.16	—	4.0	0.009	1.20	0.0	0.06	16.97	0.01	1.840	10.31	0.19	8.0	91.7	0.3	-2.71	0.80	0.79	1.16	4.0	0.005	0.76	0.0	0.04	18.15	0.00	1.833	18.18	0.44	7.9	92.1	0.0	-1.10	0.47	0.80	0.80	0.96	36021	4316	11	112	4	0	0	logfile
✔	7LMY	23442	2023-11-21	2021-02-06	2.4	3.32	2.45	2.9	0.005	0.77	0.0	0.04	14.25	0.01	1.987	8.17	1.89	2.7	97.3	0.0	0.96	0.80	0.76	3.08	3.0	0.003	0.50	0.0	0.04	14.57	0.00	1.959	7.23	0.45	2.6	97.4	0.0	1.70	1.18	0.88	0.87	2.88	35646	4470	12	0	30	0	0	logfile
✔	6ZP4	11335	2023-11-16	2020-07-08	2.9	2.98	—	2.6	0.007	0.92	0.0	0.05	15.90	0.01	2.079	4.90	0.33	5.3	94.7	0.1	-3.82	0.84	0.81	2.89	2.6	0.006	0.73	0.0	0.04	16.51	0.00	1.870	10.90	2.42	5.5	94.4	0.0	-0.46	0.45	0.89	0.89	2.57	117784	10408	59	1796	6	0	0	logfile
✔	7K9L	22754	2023-11-15	2020-09-29	4.9	4.39	—	4.7	0.007	1.19	0.0	0.07	15.28	0.01	2.254	9.45	3.96	3.5	96.5	0.0	-1.98	0.67	0.78	—	4.6	0.004	0.75	0.0	0.04	14.11	0.00	2.177	19.89	0.00	4.1	95.9	0.0	0.32	1.01	0.69	0.78	—	10472	1372	4	0	0	0	0	logfile
✔	7VHM	31999	2023-11-19	2021-09-22	3.2	3.32	—	3.3	0.004	0.66	0.0	0.05	14.39	0.01	2.124	10.68	0.00	6.6	93.4	0.0	-2.95	0.73	0.80	2.94	3.3	0.006	0.64	0.0	0.05	15.42	0.00	2.149	9.85	0.36	7.3	92.7	0.0	-1.83	0.29	0.74	0.85	2.81	24972	3237	3	0	0	0	0	logfile
✔	7WTZ	32806	2023-11-20	2022-02-05	3.0	2.82	—	2.8	0.004	0.86	0.0	0.05	15.97	0.01	2.213	5.25	0.09	3.9	96.0	0.1	-1.27	0.78	0.76	2.32	2.8	0.004	0.69	0.0	0.04	17.19	0.00	2.077	10.10	1.83	4.2	95.8	0.0	0.33	1.16	0.80	0.80	2.10	85113	6331	36	1624	2	0	0	logfile
✔	6WJJ	21694	2023-11-14	2020-04-13	3.8	3.85	—	3.8	0.008	1.05	3.0	0.06	10.44	0.01	2.163	4.56	0.89	5.8	94.2	0.0	-3.43	0.74	0.81	2.71	3.8	0.002	0.56	0.0	0.04	14.15	0.00	2.130	7.82	0.23	3.3	96.7	0.0	-0.01	1.31	0.74	0.80	1.86	56908	7076	24	0	24	0	0	logfile
✔	5KUF	8289	2023-11-18	2016-07-13	3.8	3.80	—	3.7	0.009	1.02	0.0	0.05	8.87	0.01	2.021	29.22	0.08	15.5	84.4	0.1	-5.82	0.61	0.71	1.68	3.7	0.003	0.69	0.0	0.04	13.57	0.00	2.155	13.20	0.35	5.9	94.1	0.0	-1.38	1.57	0.61	0.71	1.29	23728	3000	8	0	4	0	0	logfile
✔	7TCG	25811	2023-11-14	2021-12-23	3.8	3.89	3.84	3.9	0.004	1.15	0.0	0.04	15.91	0.00	2.138	5.54	0.00	7.9	92.1	0.0	-0.53	0.67	0.81	1.03	3.9	0.002	0.65	0.0	0.04	16.69	0.00	2.142	5.76	0.21	7.0	93.0	0.0	-0.10	0.94	0.68	0.80	1.06	8891	1123	4	0	1	0	0	logfile

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