Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6JXC	9893	2022-05-13	2019-04-23	4.1	4.20	—	4.1	0.018	1.71	0.0	0.09	8.99	0.01	2.221	4.88	0.38	9.3	87.7	3.0	-1.28	0.50	0.61	—	4.1	0.003	0.81	0.0	0.04	12.18	0.00	2.097	10.81	0.00	12.1	86.1	1.8	0.15	0.97	0.55	0.70	—	15270	2345	1	0	0	0	0	logfile
✔	6AH3	9622	2022-05-16	2018-08-16	3.48	3.57	—	3.5	0.004	0.83	0.0	0.05	13.19	0.01	1.476	8.02	0.18	6.0	93.9	0.0	-3.57	0.62	0.58	0.49	3.5	0.006	0.78	0.0	0.04	15.64	0.01	1.988	13.81	0.42	5.9	94.1	0.0	-0.13	1.64	0.72	0.78	1.47	28703	2380	14	449	3	0	0	logfile
✔	5LMT	4079	2022-05-12	2016-08-01	4.15	4.33	4.20	4.2	0.008	1.43	21.0	0.12	20.74	0.01	1.290	18.82	22.35	11.9	84.8	3.3	-2.73	0.77	0.76	—	4.1	0.006	0.83	0.0	0.04	16.63	0.01	1.812	30.98	0.05	9.5	90.0	0.5	-1.66	0.90	0.80	0.83	—	55776	2622	31	1612	88	0	0	logfile
✔	6BGJ	7096	2022-05-12	2017-10-28	3.8	3.68	3.27	3.6	0.008	1.21	0.0	0.06	10.72	0.01	2.142	10.69	0.00	13.7	85.7	0.6	-5.82	0.47	0.59	1.68	3.6	0.005	0.92	0.0	0.05	14.36	0.01	2.037	19.66	0.14	13.7	85.9	0.4	-1.54	1.39	0.50	0.61	1.43	7418	980	4	0	2	0	0	logfile
✔	5VN3	8713	2022-05-15	2017-04-28	3.7	3.93	3.74	3.8	0.009	1.13	0.0	0.06	9.18	0.01	2.235	6.46	0.12	10.8	88.8	0.4	-5.03	0.73	0.79	2.37	3.8	0.003	0.69	0.0	0.04	13.70	0.00	2.151	10.07	0.20	7.4	92.4	0.2	-2.10	0.75	0.75	0.82	2.07	23727	2814	21	0	129	0	0	logfile
✔	6SH3	10192	2022-05-14	2019-08-05	3.4	3.55	—	3.5	0.006	0.91	0.0	0.05	13.40	0.01	2.287	3.59	0.62	6.5	93.5	0.0	-3.29	0.70	0.80	2.63	3.5	0.003	0.66	0.0	0.04	15.72	0.01	2.243	6.28	0.31	5.7	94.3	0.0	-0.88	2.17	0.71	0.81	2.67	21021	2632	14	0	7	0	0	logfile
✔	6B7N	7063	2022-05-15	2017-10-04	3.3	4.06	—	3.6	0.008	1.11	0.0	0.07	10.65	0.01	2.171	5.55	0.78	12.1	87.5	0.4	-4.33	0.88	0.85	2.77	3.6	0.003	0.67	0.0	0.05	12.20	0.00	2.108	11.39	0.26	10.5	89.0	0.4	-1.44	0.47	0.88	0.86	2.28	22215	2898	6	0	57	0	0	logfile
✔	6NUR	0520	2022-05-12	2019-02-01	3.1	3.25	3.17	3.3	0.016	1.55	0.0	0.09	10.59	0.01	2.270	2.57	0.52	1.4	98.6	0.0	-0.12	0.64	0.81	4.19	3.3	0.003	0.58	0.0	0.04	14.53	0.00	2.177	7.01	0.31	2.4	97.6	0.0	0.53	0.72	0.58	0.83	3.10	8647	1087	5	0	2	0	0	logfile
✔	5VN8	8717	2022-05-14	2017-04-28	3.6	3.72	3.44	3.6	0.006	1.09	0.0	0.06	8.54	0.01	2.246	5.66	0.00	12.4	86.9	0.6	-4.89	0.72	0.77	1.93	3.6	0.004	0.72	0.0	0.05	14.44	0.00	2.194	12.24	0.19	9.2	90.7	0.1	-2.51	1.56	0.74	0.81	1.86	20589	2427	18	0	114	0	0	logfile
✔	6iFZ	9659	2022-05-14	2018-09-21	3.58	3.57	—	3.5	0.008	1.15	2.0	0.07	16.35	0.01	1.258	12.63	0.96	10.7	88.8	0.5	-5.16	0.72	0.80	2.37	3.5	0.005	0.88	0.0	0.04	17.56	0.00	1.532	15.97	0.21	8.4	91.5	0.1	-2.23	1.66	0.72	0.79	2.02	19185	2254	11	62	1	0	0	logfile
✘	5ZJi	6932	2022-05-17	2018-03-20	3.3	3.39	—	3.4	0.012	1.45	0.0	0.11	16.67	0.01	1.204	8.01	0.45	6.4	93.6	0.0	-3.56	0.68	0.84	3.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	44708	4087	40	0	271	0	0	logfile
✔	6QWL	4660	2022-05-13	2019-03-05	4.1	4.22	—	4.1	0.008	1.01	0.0	0.06	16.06	0.01	2.214	10.07	0.93	10.8	89.1	0.1	-4.69	0.75	0.74	—	4.1	0.003	0.69	0.0	0.04	15.08	0.01	2.172	16.69	0.09	7.0	93.0	0.0	-1.60	2.25	0.75	0.74	—	10408	1244	5	26	0	0	0	logfile
✔	6E1K	8956	2022-05-13	2018-07-10	3.3	3.68	3.47	3.7	0.019	1.76	1.0	0.08	13.49	0.01	2.047	10.41	1.50	11.4	88.3	0.3	-6.12	0.53	0.67	3.36	3.7	0.004	0.73	0.0	0.04	14.52	0.00	2.069	12.45	0.67	6.2	93.8	0.0	-1.98	0.76	0.58	0.67	1.69	11641	1450	10	0	21	2	0	logfile
✔	6BCL	7082	2022-05-16	2017-10-20	3.54	3.64	—	3.6	0.008	0.96	0.0	0.05	9.61	0.01	2.324	3.07	0.38	5.8	94.2	0.0	-4.83	0.63	0.80	2.42	3.6	0.004	0.68	0.0	0.04	13.97	0.00	2.154	7.51	0.44	5.7	94.3	0.0	1.02	0.87	0.65	0.81	1.98	30474	3868	5	0	2	0	0	logfile
✔	6BCJ	7081	2022-05-16	2017-10-20	3.14	3.22	—	3.2	0.008	0.97	0.0	0.05	9.60	0.01	2.301	2.63	0.38	5.9	94.1	0.0	-4.83	0.68	0.84	3.10	3.2	0.010	0.86	2.0	0.04	14.14	0.00	2.258	7.67	0.25	4.8	95.2	0.0	1.25	0.74	0.69	0.82	2.06	29868	3744	9	0	4	8	0	logfile
✔	6BCo	7083	2022-05-16	2017-10-20	2.88	2.96	—	3.0	0.007	0.98	0.0	0.05	9.77	0.01	2.286	3.76	0.37	5.8	94.2	0.0	-4.72	0.67	0.82	3.73	2.9	0.013	1.04	0.0	0.04	15.04	0.01	2.166	7.56	2.03	5.2	94.8	0.0	0.80	1.28	0.66	0.85	2.74	30432	3808	8	0	4	0	0	logfile
✘	5MM2	3528	2022-05-12	2016-12-08	2.7	12.53	1.51	—	0.011	1.29	0.0	0.07	10.78	0.01	1.325	19.80	0.54	12.1	87.0	0.8	-3.96	-0.08	-0.03	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6605	854	3	0	0	0	0	logfile
✔	5LMR	4077	2022-05-12	2016-08-01	4.45	4.71	4.60	4.4	0.008	1.39	20.0	0.12	20.50	0.01	1.426	17.95	16.73	8.7	88.5	2.8	-2.16	0.79	0.74	—	4.4	0.004	0.73	0.0	0.04	16.54	0.01	1.994	29.74	0.05	8.0	91.6	0.5	-1.57	1.61	0.84	0.85	—	55662	2628	29	1609	4	0	0	logfile
✔	6BCQ	7085	2022-05-16	2017-10-20	3.25	3.34	—	3.3	0.007	1.00	0.0	0.05	9.82	0.01	2.318	3.48	0.25	5.5	94.5	0.0	-4.85	0.64	0.80	3.09	3.3	0.008	0.82	1.0	0.04	14.79	0.01	2.192	8.22	0.49	5.5	94.5	0.0	0.94	0.86	0.64	0.82	1.71	31048	3932	8	0	4	0	0	logfile
✔	6C6S	7349	2022-05-15	2018-01-19	3.7	3.78	—	3.7	0.009	1.06	0.0	0.06	12.85	0.01	2.060	6.57	0.38	8.3	91.5	0.2	-4.10	0.75	0.83	2.35	3.7	0.004	0.69	0.0	0.04	16.52	0.01	1.919	12.39	0.31	6.5	93.4	0.1	-0.80	1.54	0.76	0.84	1.88	27691	3360	11	68	3	0	0	logfile

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