Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7DZ7	30925	2022-12-19	2021-01-23	2.84	2.53	—	2.8	0.009	1.59	0.0	0.07	20.30	0.02	1.210	6.41	0.47	4.7	95.2	0.1	-2.58	0.67	0.77	3.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	69647	5998	55	0	471	0	0	logfile
✔	7oG5	12878	2022-12-13	2021-05-06	3.37	3.57	—	3.6	0.010	0.95	0.0	0.05	14.71	0.01	2.021	19.65	0.00	10.1	89.9	0.0	-1.60	0.63	0.82	2.97	3.6	0.004	0.77	0.0	0.04	16.71	0.01	2.094	16.57	0.78	7.5	92.5	0.0	0.43	0.60	0.60	0.80	1.85	15444	1892	12	0	0	0	0	logfile
✔	7LXD	23570	2022-12-13	2021-03-03	4.11	4.31	—	4.1	0.006	1.30	1.0	0.07	15.45	0.01	2.276	9.93	0.00	2.7	97.3	0.0	-3.73	0.79	0.63	—	4.1	0.004	0.81	0.0	0.05	14.53	0.01	2.059	26.31	0.05	11.9	88.1	0.0	-2.64	1.71	0.80	0.66	—	17456	2135	6	0	1	0	0	logfile
✔	6XoU	22280	2022-12-11	2020-07-07	4.0	4.67	4.02	4.1	0.005	1.06	0.0	0.06	13.63	0.01	2.261	4.32	0.23	2.8	97.2	0.0	-1.51	0.89	0.75	—	4.1	0.003	0.87	0.0	0.04	14.90	0.00	2.138	12.12	0.47	2.4	97.6	0.0	1.20	1.78	0.91	0.85	—	7697	965	1	0	0	0	0	logfile
✔	6XoV	22281	2022-12-11	2020-07-07	3.3	3.79	3.30	3.4	0.005	0.76	1.0	0.05	14.28	0.01	2.100	13.99	0.35	5.0	95.0	0.0	-1.92	0.85	0.80	2.36	3.5	0.003	0.66	0.0	0.04	15.23	0.00	2.186	10.74	0.12	3.0	97.0	0.0	0.99	0.98	0.84	0.81	1.86	7755	969	3	0	3	0	0	logfile
✔	6XoT	22279	2022-12-11	2020-07-07	3.9	4.56	3.90	4.1	0.006	1.07	0.0	0.06	14.01	0.01	2.272	6.02	0.23	2.8	97.2	0.0	-1.51	0.86	0.74	0.81	4.2	0.003	0.85	1.0	0.05	15.87	0.00	2.117	17.81	0.47	2.4	97.6	0.0	0.83	1.97	0.87	0.80	1.06	7704	966	1	0	0	0	0	logfile
✔	6XoS	22278	2022-12-11	2020-07-07	3.7	4.30	3.63	3.9	0.009	1.09	0.0	0.06	13.21	0.01	2.225	3.14	0.00	2.4	97.6	0.0	-1.45	0.89	0.82	1.85	3.9	0.003	0.75	0.0	0.04	14.49	0.00	2.152	9.23	0.00	2.1	97.9	0.0	1.57	0.98	0.89	0.85	1.92	7704	966	1	0	0	0	0	logfile
✔	7LQG	23485	2022-12-12	2021-02-13	3.4	3.13	—	3.3	0.016	1.42	0.0	0.04	20.72	0.00	1.842	31.02	14.58	0.0	100.0	0.0	-5.94	0.61	0.81	5.57	3.2	0.110	4.37	186.0	0.30	23.68	0.02	1.819	119.87	4.75	35.8	64.2	0.0	-8.04	1.65	0.67	0.86	3.90	12096	1152	144	0	0	0	0	logfile
✔	7DDQ	30656	2022-12-14	2020-10-29	2.84	3.56	—	3.1	0.012	1.92	0.0	0.06	20.42	0.00	1.706	14.07	0.00	4.7	95.3	0.0	1.05	0.77	0.77	4.39	3.2	0.004	1.18	0.0	0.04	20.85	0.00	1.895	14.11	1.70	4.3	95.7	0.0	1.73	1.35	0.79	0.89	3.51	22571	2354	64	0	62	0	0	logfile
✔	7EJU	31163	2022-12-13	2021-04-02	3.5	3.64	—	3.6	0.009	1.29	0.0	0.07	11.94	0.01	2.257	4.86	1.15	17.0	82.8	0.2	-5.48	0.72	0.79	3.13	3.6	0.003	0.74	0.0	0.04	15.07	0.00	2.069	9.94	0.45	12.8	87.2	0.0	-2.39	0.85	0.70	0.78	2.20	13713	1700	4	0	3	0	0	logfile
✔	7F3U	31441	2022-12-11	2021-06-17	4.0	4.20	—	4.2	0.006	0.89	0.0	0.05	11.59	0.00	2.275	21.93	0.00	8.6	91.4	0.0	2.22	0.60	0.78	—	4.2	0.004	0.85	0.0	0.04	15.47	0.00	2.152	18.21	1.74	5.8	94.2	0.0	3.37	1.30	0.60	0.78	—	4274	656	2	0	0	0	0	logfile
✘	7F3T	31440	2022-12-18	2021-06-17	3.69	3.94	—	3.9	0.010	1.16	0.0	0.06	15.70	0.00	1.217	9.54	0.33	5.2	94.5	0.3	0.40	0.68	0.81	1.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5632	660	4	0	2	0	0	logfile
✔	7E8i	31020	2022-12-13	2021-03-01	3.1	3.57	—	3.5	0.005	0.74	0.0	0.05	24.79	0.00	2.216	7.98	0.00	3.3	96.7	0.0	-2.84	0.74	0.78	2.22	3.5	0.005	0.62	0.0	0.04	26.85	0.00	2.190	9.79	0.40	4.1	95.9	0.0	0.58	0.54	0.74	0.80	2.16	15271	1176	12	290	0	0	0	logfile
✔	7oGP	12885	2022-12-13	2021-05-07	3.3	3.42	3.38	3.4	0.003	0.69	0.0	0.05	14.59	0.01	2.287	3.66	0.27	4.3	95.7	0.0	-4.75	0.56	0.73	1.16	3.4	0.002	0.60	0.0	0.04	16.55	0.00	2.176	7.63	0.32	5.2	94.8	0.0	-1.13	0.82	0.69	0.86	1.86	17171	2144	6	0	1	0	0	logfile
✔	6XLC	22239	2022-12-12	2020-06-28	3.66	3.01	—	3.7	0.003	0.52	0.0	0.04	12.74	0.00	2.079	6.07	0.00	1.6	98.4	0.0	-2.69	0.66	0.64	1.16	3.6	0.003	0.59	0.0	0.04	15.96	0.00	1.871	12.29	0.18	3.0	97.0	0.0	-0.30	1.47	0.72	0.75	2.03	9858	1212	4	0	4	0	0	logfile
✔	6XLD	22240	2022-12-12	2020-06-28	3.66	3.78	—	3.7	0.003	0.51	0.0	0.04	9.94	0.00	2.061	5.73	0.58	1.5	98.5	0.0	-3.76	0.77	0.75	1.85	3.7	0.002	0.61	0.0	0.04	14.50	0.00	1.951	10.18	0.00	3.1	96.9	0.0	-0.23	1.41	0.80	0.81	2.33	10992	1349	5	0	4	0	0	logfile
✔	7oGR	12886	2022-12-13	2021-05-07	3.0	3.10	2.89	3.1	0.003	0.69	0.0	0.05	13.65	0.01	2.309	3.44	0.00	5.2	94.8	0.0	-4.69	0.68	0.80	2.46	3.1	0.003	0.61	0.0	0.04	16.44	0.00	2.150	7.49	1.44	5.1	94.9	0.0	-0.66	1.33	0.70	0.84	2.51	14135	1775	7	0	1	0	0	logfile
✔	6XLF	22242	2022-12-13	2020-06-28	3.15	3.29	—	3.2	0.003	0.47	0.0	0.04	12.70	0.00	2.115	6.23	1.20	1.6	98.4	0.0	-4.12	0.75	0.79	2.37	3.2	0.004	0.59	0.0	0.04	15.91	0.00	1.908	10.52	0.33	3.4	96.6	0.0	-0.68	2.49	0.78	0.85	2.75	13653	1680	6	0	6	0	0	logfile
✔	6XLE	22241	2022-12-12	2020-06-28	2.74	2.85	—	2.8	0.003	0.49	0.0	0.04	10.00	0.00	2.095	5.07	0.07	1.4	98.6	0.0	-3.54	0.75	0.80	3.20	2.8	0.004	0.60	0.0	0.04	16.56	0.00	1.972	8.51	1.04	3.1	96.9	0.0	-0.30	1.32	0.79	0.87	3.49	12240	1502	6	0	6	0	0	logfile
✔	7oP1	13011	2022-12-12	2021-05-28	3.7	3.77	—	3.6	0.004	1.16	0.0	0.04	13.67	0.00	1.848	7.17	0.00	4.7	95.3	0.0	-0.69	0.69	0.87	2.43	3.6	0.004	0.56	0.0	0.04	15.04	0.00	1.669	5.23	0.10	3.9	96.1	0.0	0.30	0.27	0.69	0.86	1.61	8744	1098	1	0	3	0	0	logfile

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