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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7DZ7 | 30925 | 2022-12-19 | 2021-01-23 | 2.84 | 2.53 | — | 2.8 | 0.009 | 1.59 | 0.0 | 0.07 | 20.30 | 0.02 | 1.210 | 6.41 | 0.47 | 4.7 | 95.2 | 0.1 | -2.58 | 0.67 | 0.77 | 3.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 69647 | 5998 | 55 | 0 | 471 | 0 | 0 | logfile |
✔ | 7oG5 | 12878 | 2022-12-13 | 2021-05-06 | 3.37 | 3.57 | — | 3.6 | 0.010 | 0.95 | 0.0 | 0.05 | 14.71 | 0.01 | 2.021 | 19.65 | 0.00 | 10.1 | 89.9 | 0.0 | -1.60 | 0.63 | 0.82 | 2.97 | 3.6 | 0.004 | 0.77 | 0.0 | 0.04 | 16.71 | 0.01 | 2.094 | 16.57 | 0.78 | 7.5 | 92.5 | 0.0 | 0.43 | 0.60 | 0.60 | 0.80 | 1.85 | 15444 | 1892 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LXD | 23570 | 2022-12-13 | 2021-03-03 | 4.11 | 4.31 | — | 4.1 | 0.006 | 1.30 | 1.0 | 0.07 | 15.45 | 0.01 | 2.276 | 9.93 | 0.00 | 2.7 | 97.3 | 0.0 | -3.73 | 0.79 | 0.63 | — | 4.1 | 0.004 | 0.81 | 0.0 | 0.05 | 14.53 | 0.01 | 2.059 | 26.31 | 0.05 | 11.9 | 88.1 | 0.0 | -2.64 | 1.71 | 0.80 | 0.66 | — | 17456 | 2135 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 6XoU | 22280 | 2022-12-11 | 2020-07-07 | 4.0 | 4.67 | 4.02 | 4.1 | 0.005 | 1.06 | 0.0 | 0.06 | 13.63 | 0.01 | 2.261 | 4.32 | 0.23 | 2.8 | 97.2 | 0.0 | -1.51 | 0.89 | 0.75 | — | 4.1 | 0.003 | 0.87 | 0.0 | 0.04 | 14.90 | 0.00 | 2.138 | 12.12 | 0.47 | 2.4 | 97.6 | 0.0 | 1.20 | 1.78 | 0.91 | 0.85 | — | 7697 | 965 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XoV | 22281 | 2022-12-11 | 2020-07-07 | 3.3 | 3.79 | 3.30 | 3.4 | 0.005 | 0.76 | 1.0 | 0.05 | 14.28 | 0.01 | 2.100 | 13.99 | 0.35 | 5.0 | 95.0 | 0.0 | -1.92 | 0.85 | 0.80 | 2.36 | 3.5 | 0.003 | 0.66 | 0.0 | 0.04 | 15.23 | 0.00 | 2.186 | 10.74 | 0.12 | 3.0 | 97.0 | 0.0 | 0.99 | 0.98 | 0.84 | 0.81 | 1.86 | 7755 | 969 | 3 | 0 | 3 | 0 | 0 | logfile |
✔ | 6XoT | 22279 | 2022-12-11 | 2020-07-07 | 3.9 | 4.56 | 3.90 | 4.1 | 0.006 | 1.07 | 0.0 | 0.06 | 14.01 | 0.01 | 2.272 | 6.02 | 0.23 | 2.8 | 97.2 | 0.0 | -1.51 | 0.86 | 0.74 | 0.81 | 4.2 | 0.003 | 0.85 | 1.0 | 0.05 | 15.87 | 0.00 | 2.117 | 17.81 | 0.47 | 2.4 | 97.6 | 0.0 | 0.83 | 1.97 | 0.87 | 0.80 | 1.06 | 7704 | 966 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XoS | 22278 | 2022-12-11 | 2020-07-07 | 3.7 | 4.30 | 3.63 | 3.9 | 0.009 | 1.09 | 0.0 | 0.06 | 13.21 | 0.01 | 2.225 | 3.14 | 0.00 | 2.4 | 97.6 | 0.0 | -1.45 | 0.89 | 0.82 | 1.85 | 3.9 | 0.003 | 0.75 | 0.0 | 0.04 | 14.49 | 0.00 | 2.152 | 9.23 | 0.00 | 2.1 | 97.9 | 0.0 | 1.57 | 0.98 | 0.89 | 0.85 | 1.92 | 7704 | 966 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LQG | 23485 | 2022-12-12 | 2021-02-13 | 3.4 | 3.13 | — | 3.3 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 1.842 | 31.02 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.61 | 0.81 | 5.57 | 3.2 | 0.110 | 4.37 | 186.0 | 0.30 | 23.68 | 0.02 | 1.819 | 119.87 | 4.75 | 35.8 | 64.2 | 0.0 | -8.04 | 1.65 | 0.67 | 0.86 | 3.90 | 12096 | 1152 | 144 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DDQ | 30656 | 2022-12-14 | 2020-10-29 | 2.84 | 3.56 | — | 3.1 | 0.012 | 1.92 | 0.0 | 0.06 | 20.42 | 0.00 | 1.706 | 14.07 | 0.00 | 4.7 | 95.3 | 0.0 | 1.05 | 0.77 | 0.77 | 4.39 | 3.2 | 0.004 | 1.18 | 0.0 | 0.04 | 20.85 | 0.00 | 1.895 | 14.11 | 1.70 | 4.3 | 95.7 | 0.0 | 1.73 | 1.35 | 0.79 | 0.89 | 3.51 | 22571 | 2354 | 64 | 0 | 62 | 0 | 0 | logfile |
✔ | 7EJU | 31163 | 2022-12-13 | 2021-04-02 | 3.5 | 3.64 | — | 3.6 | 0.009 | 1.29 | 0.0 | 0.07 | 11.94 | 0.01 | 2.257 | 4.86 | 1.15 | 17.0 | 82.8 | 0.2 | -5.48 | 0.72 | 0.79 | 3.13 | 3.6 | 0.003 | 0.74 | 0.0 | 0.04 | 15.07 | 0.00 | 2.069 | 9.94 | 0.45 | 12.8 | 87.2 | 0.0 | -2.39 | 0.85 | 0.70 | 0.78 | 2.20 | 13713 | 1700 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 7F3U | 31441 | 2022-12-11 | 2021-06-17 | 4.0 | 4.20 | — | 4.2 | 0.006 | 0.89 | 0.0 | 0.05 | 11.59 | 0.00 | 2.275 | 21.93 | 0.00 | 8.6 | 91.4 | 0.0 | 2.22 | 0.60 | 0.78 | — | 4.2 | 0.004 | 0.85 | 0.0 | 0.04 | 15.47 | 0.00 | 2.152 | 18.21 | 1.74 | 5.8 | 94.2 | 0.0 | 3.37 | 1.30 | 0.60 | 0.78 | — | 4274 | 656 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7F3T | 31440 | 2022-12-18 | 2021-06-17 | 3.69 | 3.94 | — | 3.9 | 0.010 | 1.16 | 0.0 | 0.06 | 15.70 | 0.00 | 1.217 | 9.54 | 0.33 | 5.2 | 94.5 | 0.3 | 0.40 | 0.68 | 0.81 | 1.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5632 | 660 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7E8i | 31020 | 2022-12-13 | 2021-03-01 | 3.1 | 3.57 | — | 3.5 | 0.005 | 0.74 | 0.0 | 0.05 | 24.79 | 0.00 | 2.216 | 7.98 | 0.00 | 3.3 | 96.7 | 0.0 | -2.84 | 0.74 | 0.78 | 2.22 | 3.5 | 0.005 | 0.62 | 0.0 | 0.04 | 26.85 | 0.00 | 2.190 | 9.79 | 0.40 | 4.1 | 95.9 | 0.0 | 0.58 | 0.54 | 0.74 | 0.80 | 2.16 | 15271 | 1176 | 12 | 290 | 0 | 0 | 0 | logfile |
✔ | 7oGP | 12885 | 2022-12-13 | 2021-05-07 | 3.3 | 3.42 | 3.38 | 3.4 | 0.003 | 0.69 | 0.0 | 0.05 | 14.59 | 0.01 | 2.287 | 3.66 | 0.27 | 4.3 | 95.7 | 0.0 | -4.75 | 0.56 | 0.73 | 1.16 | 3.4 | 0.002 | 0.60 | 0.0 | 0.04 | 16.55 | 0.00 | 2.176 | 7.63 | 0.32 | 5.2 | 94.8 | 0.0 | -1.13 | 0.82 | 0.69 | 0.86 | 1.86 | 17171 | 2144 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 6XLC | 22239 | 2022-12-12 | 2020-06-28 | 3.66 | 3.01 | — | 3.7 | 0.003 | 0.52 | 0.0 | 0.04 | 12.74 | 0.00 | 2.079 | 6.07 | 0.00 | 1.6 | 98.4 | 0.0 | -2.69 | 0.66 | 0.64 | 1.16 | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 15.96 | 0.00 | 1.871 | 12.29 | 0.18 | 3.0 | 97.0 | 0.0 | -0.30 | 1.47 | 0.72 | 0.75 | 2.03 | 9858 | 1212 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6XLD | 22240 | 2022-12-12 | 2020-06-28 | 3.66 | 3.78 | — | 3.7 | 0.003 | 0.51 | 0.0 | 0.04 | 9.94 | 0.00 | 2.061 | 5.73 | 0.58 | 1.5 | 98.5 | 0.0 | -3.76 | 0.77 | 0.75 | 1.85 | 3.7 | 0.002 | 0.61 | 0.0 | 0.04 | 14.50 | 0.00 | 1.951 | 10.18 | 0.00 | 3.1 | 96.9 | 0.0 | -0.23 | 1.41 | 0.80 | 0.81 | 2.33 | 10992 | 1349 | 5 | 0 | 4 | 0 | 0 | logfile |
✔ | 7oGR | 12886 | 2022-12-13 | 2021-05-07 | 3.0 | 3.10 | 2.89 | 3.1 | 0.003 | 0.69 | 0.0 | 0.05 | 13.65 | 0.01 | 2.309 | 3.44 | 0.00 | 5.2 | 94.8 | 0.0 | -4.69 | 0.68 | 0.80 | 2.46 | 3.1 | 0.003 | 0.61 | 0.0 | 0.04 | 16.44 | 0.00 | 2.150 | 7.49 | 1.44 | 5.1 | 94.9 | 0.0 | -0.66 | 1.33 | 0.70 | 0.84 | 2.51 | 14135 | 1775 | 7 | 0 | 1 | 0 | 0 | logfile |
✔ | 6XLF | 22242 | 2022-12-13 | 2020-06-28 | 3.15 | 3.29 | — | 3.2 | 0.003 | 0.47 | 0.0 | 0.04 | 12.70 | 0.00 | 2.115 | 6.23 | 1.20 | 1.6 | 98.4 | 0.0 | -4.12 | 0.75 | 0.79 | 2.37 | 3.2 | 0.004 | 0.59 | 0.0 | 0.04 | 15.91 | 0.00 | 1.908 | 10.52 | 0.33 | 3.4 | 96.6 | 0.0 | -0.68 | 2.49 | 0.78 | 0.85 | 2.75 | 13653 | 1680 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 6XLE | 22241 | 2022-12-12 | 2020-06-28 | 2.74 | 2.85 | — | 2.8 | 0.003 | 0.49 | 0.0 | 0.04 | 10.00 | 0.00 | 2.095 | 5.07 | 0.07 | 1.4 | 98.6 | 0.0 | -3.54 | 0.75 | 0.80 | 3.20 | 2.8 | 0.004 | 0.60 | 0.0 | 0.04 | 16.56 | 0.00 | 1.972 | 8.51 | 1.04 | 3.1 | 96.9 | 0.0 | -0.30 | 1.32 | 0.79 | 0.87 | 3.49 | 12240 | 1502 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7oP1 | 13011 | 2022-12-12 | 2021-05-28 | 3.7 | 3.77 | — | 3.6 | 0.004 | 1.16 | 0.0 | 0.04 | 13.67 | 0.00 | 1.848 | 7.17 | 0.00 | 4.7 | 95.3 | 0.0 | -0.69 | 0.69 | 0.87 | 2.43 | 3.6 | 0.004 | 0.56 | 0.0 | 0.04 | 15.04 | 0.00 | 1.669 | 5.23 | 0.10 | 3.9 | 96.1 | 0.0 | 0.30 | 0.27 | 0.69 | 0.86 | 1.61 | 8744 | 1098 | 1 | 0 | 3 | 0 | 0 | logfile |