Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6TSK	10564	2022-07-06	2019-12-20	2.3	2.36	—	2.3	0.012	1.54	24.0	0.11	16.57	0.02	1.535	1.76	2.42	2.9	97.0	0.1	-1.00	0.84	0.94	7.33	2.3	0.003	0.63	0.0	0.05	17.01	0.00	1.964	3.15	1.73	2.5	97.5	0.0	0.43	0.82	0.81	0.91	6.45	33632	4060	12	0	8	964	0	logfile
✔	3J9C	6224	2022-07-05	2014-12-25	2.9	3.02	—	3.1	0.005	1.11	0.0	0.05	14.41	0.00	2.277	7.02	6.13	4.8	95.2	0.0	-0.81	0.74	0.87	2.67	3.0	0.003	0.59	0.0	0.04	16.40	0.00	2.184	8.15	3.09	2.6	97.4	0.0	0.29	1.52	0.76	0.86	3.08	23296	2961	7	0	14	0	0	logfile
✔	6J0B	9760	2022-07-07	2018-12-23	2.9	3.24	—	3.2	0.008	0.96	0.0	0.06	15.44	0.01	2.311	4.89	4.01	3.8	96.0	0.2	-3.73	0.57	0.83	3.57	3.2	0.003	0.65	0.0	0.04	17.20	0.00	2.150	8.35	3.97	3.4	96.6	0.0	-0.54	0.75	0.55	0.84	2.75	46788	6000	24	0	0	0	0	logfile
✘	6V39	21030	2022-07-07	2019-11-25	3.04	3.20	—	3.1	0.003	0.48	0.0	0.03	14.58	0.00	1.179	6.23	0.00	2.5	97.4	0.1	-1.02	0.86	0.85	2.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	141897	5458	70	4615	116	273	0	logfile
✔	6AV9	7007	2022-07-03	2017-09-01	3.9	3.83	—	3.8	0.008	1.12	0.0	0.06	12.69	0.01	1.920	37.26	0.33	12.8	86.8	0.4	-4.62	0.58	0.80	2.42	3.8	0.013	1.43	1.0	0.05	16.27	0.01	2.017	22.61	0.22	10.9	88.7	0.5	-2.19	1.26	0.59	0.79	1.19	8673	1101	6	0	3	0	0	logfile
✔	6AVB	7008	2022-07-03	2017-09-01	3.9	3.83	—	3.8	0.009	1.13	3.0	0.06	11.81	0.01	2.072	31.04	0.00	12.9	86.8	0.3	-5.00	0.58	0.79	2.72	3.8	0.013	1.48	0.0	0.05	15.45	0.01	1.693	24.42	0.00	11.3	88.7	0.0	-2.30	1.70	0.58	0.80	1.83	8673	1101	6	0	3	0	0	logfile
✔	6iP2	9698	2022-07-05	2018-11-01	3.7	3.82	—	3.8	0.008	1.38	0.0	0.06	11.73	0.01	2.237	6.67	0.26	12.2	87.7	0.1	-5.47	0.70	0.77	1.63	3.8	0.003	0.82	0.0	0.05	16.30	0.01	2.159	15.35	0.56	10.6	89.3	0.1	-1.95	0.97	0.71	0.78	0.78	24660	3120	12	0	12	0	0	logfile
✔	5Z3U	6882	2022-07-04	2018-01-08	4.31	4.01	—	3.9	0.011	0.98	0.0	0.05	24.03	0.01	2.030	19.01	0.09	9.0	91.0	0.0	-5.01	0.77	0.81	—	3.9	0.003	0.63	0.0	0.04	24.49	0.00	2.052	11.49	0.00	5.5	94.5	0.0	0.31	0.80	0.75	0.76	—	16766	1341	12	292	3	0	0	logfile
✔	5Z3V	6883	2022-07-04	2018-01-08	4.22	3.73	—	3.7	0.004	0.63	0.0	0.04	23.01	0.00	2.160	13.07	0.00	7.8	92.2	0.0	-2.72	0.69	0.74	—	3.7	0.003	0.62	0.0	0.04	24.39	0.00	2.204	10.34	0.09	3.6	96.3	0.1	0.97	0.84	0.69	0.71	—	16758	1339	12	292	3	0	0	logfile
✔	5T6R	8368	2022-07-05	2016-09-01	4.2	4.31	4.24	4.2	0.007	1.05	1.0	0.09	16.99	0.00	1.229	1.55	5.55	7.5	90.6	1.9	-3.58	0.82	0.80	—	4.2	0.006	0.83	0.0	0.04	16.52	0.01	1.761	17.41	0.00	9.9	89.5	0.6	-1.97	1.61	0.84	0.82	—	126616	6441	51	3483	299	12	0	logfile
✔	6CUE	7621	2022-07-06	2018-03-26	4.0	4.33	—	4.1	0.007	0.95	0.0	0.07	9.98	0.01	2.121	6.25	0.21	7.4	92.6	0.0	-3.55	0.82	0.83	—	4.0	0.003	0.72	0.0	0.04	13.39	0.00	2.134	11.98	0.33	6.7	93.3	0.0	-1.32	0.82	0.82	0.83	—	31692	3849	27	0	114	0	0	logfile
✔	6iP1	9697	2022-07-03	2018-11-01	3.9	4.05	—	4.0	0.006	1.03	0.0	0.05	11.71	0.00	1.321	8.09	0.34	7.5	92.5	0.0	-5.85	0.59	0.72	1.01	4.0	0.004	0.95	0.0	0.04	18.38	0.00	2.200	16.40	1.02	7.3	92.7	0.0	-0.36	1.25	0.60	0.75	-0.05	11245	1420	8	0	0	0	0	logfile
✘	6NSK	0499	2022-07-03	2019-01-24	2.7	2.82	2.55	3.1	0.008	1.04	0.0	0.06	10.24	0.01	1.181	4.78	0.00	3.6	96.4	0.0	-3.23	0.62	0.77	5.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9096	1092	12	0	18	0	0	logfile
✔	6T9L	10415	2022-07-04	2019-10-28	3.6	3.74	3.53	3.6	0.002	0.47	0.0	0.03	22.54	0.00	2.136	7.14	0.07	1.1	98.9	0.0	-1.63	0.74	0.68	0.82	3.6	0.004	0.69	0.0	0.04	25.04	0.01	2.005	9.03	0.07	2.3	97.7	0.0	1.00	0.82	0.84	0.84	1.19	18157	1532	18	290	8	0	0	logfile
✔	6MEC	9106	2022-07-04	2018-09-06	3.6	3.69	—	3.6	0.010	1.21	0.0	0.06	18.24	0.01	1.659	15.45	0.00	13.7	86.3	0.0	-4.93	0.86	0.80	2.53	3.6	0.007	0.87	0.0	0.03	17.73	0.00	1.934	16.07	0.00	8.6	91.4	0.0	-1.43	0.93	0.86	0.79	1.82	21276	414	5	832	52	0	0	logfile
✔	6EZ8	3984	2022-07-04	2017-11-14	4.0	4.07	—	4.1	0.007	1.29	0.0	0.06	11.10	0.01	2.277	4.92	0.83	6.1	93.6	0.3	-5.17	0.61	0.77	—	4.1	0.005	0.86	0.0	0.04	16.19	0.01	2.141	9.94	0.75	5.8	94.2	0.0	-2.16	1.62	0.63	0.82	—	20491	2621	2	0	0	0	0	logfile
✔	6EoJ	3908	2022-07-04	2017-10-09	3.55	3.58	3.51	3.6	0.007	1.33	7.0	0.09	16.65	0.00	2.526	9.99	4.80	10.1	88.2	1.7	-3.75	0.59	0.78	2.60	3.6	0.005	0.84	0.0	0.05	17.60	0.01	2.089	23.05	0.52	7.3	92.6	0.1	-2.45	1.58	0.65	0.78	2.27	13688	1710	4	0	7	0	0	logfile
✔	5H1Q	9570	2022-07-05	2016-10-11	3.3	3.90	—	4.0	0.008	1.04	0.0	0.06	11.65	0.00	1.998	16.22	0.31	12.6	86.8	0.6	-5.07	0.44	0.69	3.01	3.9	0.004	0.80	0.0	0.04	16.47	0.00	2.137	9.01	0.93	9.3	90.1	0.6	-0.11	0.82	0.56	0.80	1.75	23784	2888	8	0	0	0	0	logfile
✔	6RAZ	4788	2022-07-07	2019-04-08	4.46	4.58	4.41	4.5	0.011	1.60	29.0	0.14	18.54	0.01	1.308	23.43	6.20	17.7	81.4	1.0	-5.70	0.65	0.65	—	4.5	0.007	1.00	1.0	0.05	15.62	0.01	1.872	19.51	0.15	13.1	86.9	0.0	-3.38	3.61	0.66	0.65	—	38294	4764	18	23	6	0	0	logfile
✔	6SB3	10134	2022-07-05	2019-07-18	3.5	3.63	3.51	3.7	0.002	0.56	0.0	0.04	12.95	0.00	2.104	13.36	0.00	4.9	95.1	0.0	-2.84	0.68	0.71	1.27	3.6	0.008	0.86	2.0	0.05	16.11	0.01	1.735	26.31	0.21	8.4	91.6	0.0	-2.16	1.23	0.71	0.77	1.09	75712	9664	32	0	32	0	0	logfile

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