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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7K01 | 22587 | 2023-04-25 | 2020-09-02 | 3.9 | 4.33 | 3.91 | 3.9 | 0.008 | 0.85 | 0.0 | 0.05 | 15.05 | 0.00 | 2.034 | 30.22 | 13.19 | 14.7 | 83.6 | 1.8 | -2.01 | 0.73 | 0.60 | 1.26 | 3.9 | 0.006 | 0.80 | 0.0 | 0.05 | 14.82 | 0.00 | 2.065 | 22.10 | 0.69 | 11.8 | 88.0 | 0.3 | -1.20 | 1.00 | 0.84 | 0.83 | 1.38 | 21052 | 2916 | 10 | 0 | 6 | 0 | 0 | logfile |
✔ | 7RZF | 24758 | 2023-04-23 | 2021-08-27 | 3.4 | 2.25 | — | 3.5 | 0.009 | 1.19 | 1.0 | 0.07 | 12.93 | 0.01 | 1.454 | 14.43 | 0.41 | 4.2 | 95.8 | 0.0 | -4.07 | 0.65 | 0.74 | 2.52 | 3.5 | 0.003 | 0.70 | 0.0 | 0.04 | 15.52 | 0.00 | 2.195 | 10.95 | 0.12 | 3.9 | 96.1 | 0.0 | -0.67 | 4.10 | 0.66 | 0.76 | 1.75 | 15584 | 1902 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 5GL0 | 9520 | 2023-04-21 | 2016-07-07 | 4.2 | 4.40 | — | 4.2 | 0.018 | 1.72 | 17.0 | 0.10 | 11.34 | 0.01 | 1.957 | 21.25 | 0.51 | 6.5 | 90.6 | 2.9 | -2.58 | 0.74 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111000 | 15068 | 12 | 0 | 4 | 0 | 0 | logfile |
✔ | 6W6H | 21555 | 2023-04-28 | 2020-03-16 | 3.3 | 3.65 | — | 3.5 | 0.004 | 0.77 | 0.0 | 0.04 | 15.48 | 0.00 | 0.962 | 9.97 | 1.39 | 9.9 | 89.9 | 0.2 | -4.10 | 0.84 | 0.85 | 2.13 | 3.5 | 0.003 | 0.65 | 0.0 | 0.04 | 16.77 | 0.00 | 2.179 | 8.28 | 0.92 | 9.1 | 90.9 | 0.0 | -1.23 | 1.21 | 0.83 | 0.87 | 1.92 | 28427 | 3615 | 13 | 0 | 38 | 0 | 0 | logfile |
✔ | 7X9W | 33084 | 2023-04-21 | 2022-03-16 | 2.78 | 2.90 | 2.88 | 2.9 | 0.008 | 0.84 | 12.0 | 0.06 | 15.86 | 0.01 | 2.241 | 6.77 | 6.86 | 3.8 | 96.2 | 0.0 | -2.46 | 0.78 | 0.83 | 3.91 | 2.9 | 0.004 | 0.64 | 0.0 | 0.05 | 17.40 | 0.00 | 2.071 | 7.90 | 3.56 | 2.1 | 97.9 | 0.0 | -0.73 | 0.46 | 0.77 | 0.84 | 4.17 | 59640 | 7368 | 72 | 0 | 24 | 48 | 0 | logfile |
✔ | 7KNQ | 22954 | 2023-04-20 | 2020-11-05 | 3.4 | 3.78 | — | 3.7 | 0.009 | 0.92 | 0.0 | 0.05 | 14.56 | 0.01 | 2.083 | 19.58 | 0.38 | 11.0 | 89.0 | 0.0 | -2.88 | 0.73 | 0.76 | 2.09 | 3.7 | 0.003 | 0.70 | 0.0 | 0.04 | 16.02 | 0.00 | 2.049 | 12.91 | 0.40 | 5.4 | 94.6 | 0.1 | -0.89 | 1.24 | 0.71 | 0.76 | 0.83 | 37066 | 4704 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RYY | 24748 | 2023-04-23 | 2021-08-26 | 4.4 | 3.68 | — | 7.0 | 0.005 | 1.01 | 0.0 | 0.05 | 11.37 | 0.01 | 2.230 | 5.96 | 0.59 | 3.6 | 96.4 | 0.0 | -4.08 | 0.63 | 0.51 | — | 3.5 | 0.004 | 0.81 | 0.0 | 0.04 | 12.68 | 0.01 | 2.124 | 19.08 | 0.00 | 5.4 | 94.6 | 0.0 | -0.19 | 1.82 | 0.72 | 0.73 | — | 15836 | 2024 | 8 | 0 | 2 | 0 | 0 | logfile |
✔ | 7WK6 | 32560 | 2023-04-20 | 2022-01-08 | 3.67 | 2.86 | — | 3.8 | 0.008 | 1.07 | 1.0 | 0.07 | 15.40 | 0.01 | 2.328 | 5.81 | 0.57 | 4.7 | 94.9 | 0.4 | -5.05 | 0.77 | 0.77 | 2.23 | 3.7 | 0.007 | 0.94 | 0.0 | 0.05 | 17.87 | 0.00 | 2.115 | 21.26 | 0.86 | 5.1 | 94.9 | 0.0 | -1.19 | 1.42 | 0.79 | 0.79 | 1.73 | 6428 | 791 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RZ8 | 24754 | 2023-04-24 | 2021-08-27 | 4.1 | 3.82 | — | 4.0 | 0.011 | 1.27 | 0.0 | 0.06 | 16.28 | 0.01 | 2.246 | 5.13 | 0.93 | 4.1 | 95.8 | 0.1 | -4.14 | 0.66 | 0.74 | — | 3.7 | 0.005 | 0.75 | 0.0 | 0.05 | 15.19 | 0.01 | 2.118 | 16.55 | 0.00 | 4.9 | 95.1 | 0.0 | -0.31 | 0.98 | 0.68 | 0.78 | — | 16722 | 2044 | 8 | 0 | 26 | 0 | 0 | logfile |
✔ | 7Z1H | 14446 | 2023-04-23 | 2022-02-24 | 3.12 | 4.01 | — | 3.5 | 0.016 | 0.97 | 2.0 | 0.04 | 12.32 | 0.00 | 1.830 | 20.25 | 0.18 | 10.8 | 88.7 | 0.5 | -1.31 | 0.79 | 0.79 | 1.28 | 3.5 | 0.016 | 0.94 | 2.0 | 0.04 | 14.23 | 0.00 | 1.692 | 20.59 | 0.00 | 11.7 | 87.9 | 0.4 | -1.08 | 0.41 | 0.79 | 0.77 | 1.28 | 15032 | 1848 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 3J8H | 2807 | 2023-04-21 | 2014-10-26 | 3.8 | 3.95 | — | 3.8 | 0.006 | 1.31 | 4.0 | 0.05 | 10.89 | 0.01 | 1.488 | 33.49 | 2.47 | 5.3 | 92.8 | 1.9 | -2.06 | 0.65 | 0.64 | 1.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111160 | 12796 | 12 | 0 | 2276 | 0 | 0 | logfile |
✔ | 7AUA | 11926 | 2023-04-22 | 2020-11-02 | 2.93 | 3.12 | — | 3.1 | 0.008 | 0.64 | 0.0 | 0.05 | 12.69 | 0.00 | 1.809 | 1.92 | 0.00 | 3.7 | 96.3 | 0.0 | -0.20 | 0.79 | 0.85 | 4.78 | 3.1 | 0.003 | 0.55 | 0.0 | 0.04 | 14.95 | 0.00 | 2.148 | 4.70 | 1.07 | 2.1 | 97.9 | 0.0 | 0.47 | 2.19 | 0.81 | 0.89 | 3.57 | 11300 | 1372 | 8 | 2 | 14 | 0 | 0 | logfile |
✔ | 8DGF | 27422 | 2023-04-23 | 2022-06-23 | 2.9 | 2.47 | 3.10 | 2.7 | 0.009 | 1.21 | 0.0 | 0.06 | 14.26 | 0.01 | 2.088 | 1.38 | 0.53 | 2.2 | 97.8 | 0.0 | -0.06 | 0.48 | 0.56 | 2.47 | 2.4 | 0.003 | 0.60 | 0.0 | 0.04 | 16.44 | 0.00 | 2.169 | 6.90 | 1.76 | 2.4 | 97.6 | 0.0 | 0.67 | 0.81 | 0.50 | 0.61 | 1.75 | 64958 | 7902 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 6RWL | 10041 | 2023-04-24 | 2019-06-05 | 3.36 | 3.67 | 3.45 | 3.6 | 0.003 | 0.56 | 0.0 | 0.04 | 16.02 | 0.00 | 2.348 | 2.63 | 2.86 | 3.1 | 96.9 | 0.0 | -3.04 | 0.70 | 0.83 | 2.24 | 3.6 | 0.002 | 0.52 | 0.0 | 0.04 | 18.83 | 0.00 | 2.273 | 5.54 | 0.23 | 3.1 | 96.9 | 0.0 | 1.24 | 1.54 | 0.71 | 0.85 | 2.06 | 18272 | 2076 | 24 | 86 | 8 | 0 | 0 | logfile |
✔ | 7WVN | 32854 | 2023-04-27 | 2022-02-10 | 3.4 | 2.96 | — | 3.5 | 0.006 | 0.83 | 0.0 | 0.05 | 8.23 | 0.01 | 2.348 | 1.91 | 0.11 | 3.7 | 96.2 | 0.1 | -3.13 | 0.72 | 0.68 | 1.19 | 3.5 | 0.004 | 0.76 | 0.0 | 0.05 | 14.62 | 0.00 | 2.080 | 12.93 | 0.69 | 3.1 | 96.9 | 0.0 | -0.23 | 1.22 | 0.79 | 0.78 | 1.62 | 24805 | 3162 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6PLR | 20373 | 2023-04-23 | 2019-07-01 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14685 | 1735 | 15 | 0 | 75 | 0 | 0 | logfile |
✔ | 7NXF | 12638 | 2023-04-20 | 2021-03-18 | 3.1 | 4.01 | 3.17 | 3.6 | 0.006 | 0.82 | 0.0 | 0.04 | 14.20 | 0.01 | 2.281 | 9.15 | 0.00 | 7.9 | 92.1 | 0.0 | -0.71 | 0.60 | 0.80 | 1.58 | 3.7 | 0.005 | 0.67 | 0.0 | 0.04 | 15.64 | 0.00 | 1.905 | 9.22 | 0.44 | 7.3 | 92.7 | 0.0 | 0.44 | 1.96 | 0.59 | 0.86 | 1.35 | 6405 | 829 | 1 | 0 | 3 | 0 | 0 | logfile |
✔ | 6VKS | 21228 | 2023-04-26 | 2020-01-22 | 3.02 | 3.41 | — | 3.4 | 0.006 | 0.89 | 0.0 | 0.05 | 15.02 | 0.01 | 1.946 | 8.72 | 0.00 | 3.2 | 96.8 | 0.0 | -3.88 | 0.74 | 0.79 | 2.05 | 3.3 | 0.003 | 0.60 | 0.0 | 0.04 | 15.25 | 0.00 | 2.129 | 7.68 | 0.32 | 3.3 | 96.7 | 0.0 | 0.51 | 1.66 | 0.75 | 0.85 | 2.26 | 24034 | 3131 | 6 | 0 | 18 | 0 | 0 | logfile |
✔ | 7L8D | 23230 | 2023-04-23 | 2020-12-31 | 4.6 | 4.71 | 4.48 | 4.5 | 0.022 | 1.76 | 1.0 | 0.15 | 10.14 | 0.02 | 2.339 | 2.41 | 0.00 | 1.9 | 98.1 | 0.0 | 0.57 | 0.72 | 0.77 | — | 4.5 | 0.003 | 0.70 | 0.0 | 0.04 | 12.75 | 0.00 | 2.189 | 13.68 | 0.00 | 3.3 | 96.7 | 0.0 | -0.53 | 1.41 | 0.73 | 0.80 | — | 15564 | 1662 | 49 | 0 | 309 | 0 | 0 | logfile |
✔ | 7L8C | 23229 | 2023-04-23 | 2020-12-31 | 3.4 | 3.54 | 3.26 | 3.5 | 0.026 | 1.74 | 5.0 | 0.16 | 10.04 | 0.01 | 2.049 | 1.27 | 0.00 | 1.7 | 98.3 | 0.0 | 0.69 | 0.73 | 0.87 | 4.33 | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 14.27 | 0.00 | 2.167 | 5.39 | 0.07 | 2.0 | 98.0 | 0.0 | -0.01 | 1.22 | 0.71 | 0.86 | 3.12 | 15963 | 1691 | 56 | 0 | 331 | 0 | 0 | logfile |