Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6C3o	7338	2021-09-06	2018-01-10	3.9	3.58	—	3.6	0.006	0.92	0.0	0.05	10.43	0.00	1.661	15.20	0.32	7.4	92.6	0.0	-3.06	0.40	0.56	1.23	3.5	0.006	0.88	0.0	0.05	15.83	0.01	1.958	16.43	0.98	5.9	94.1	0.0	-0.18	3.06	0.65	0.73	1.42	49055	6472	16	0	23	0	0	logfile
✔	6M99	9050	2021-09-07	2018-08-23	3.4	3.37	—	3.3	0.007	0.97	0.0	0.06	10.05	0.01	2.186	6.86	0.38	5.8	94.2	0.0	-4.38	0.27	0.84	3.06	3.3	0.004	0.78	0.0	0.05	15.18	0.01	2.043	13.92	0.78	5.6	94.4	0.0	-0.50	0.73	0.28	0.86	2.31	101389	13152	14	0	2	0	0	logfile
✔	6AHC	9623	2021-09-06	2018-08-17	3.45	3.82	—	3.8	0.008	1.06	0.0	0.06	10.67	0.01	2.268	3.08	0.66	7.9	92.0	0.1	-4.33	0.58	0.77	2.27	3.8	0.005	0.86	0.0	0.05	15.15	0.01	2.069	9.33	0.54	7.7	92.3	0.0	-1.12	3.63	0.67	0.85	1.86	46106	6052	8	0	0	0	0	logfile
✘	5XNM	6742	2021-09-06	2017-05-23	3.2	3.28	—	3.3	0.010	1.40	0.0	0.07	15.91	0.02	1.205	9.85	0.03	2.3	97.7	0.0	-2.60	0.71	0.82	3.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	92842	8712	90	0	486	0	0	logfile
✔	6PK7	20355	2021-09-03	2019-06-28	3.1	3.55	—	3.5	0.011	1.26	8.0	0.07	12.86	0.01	1.655	10.92	0.41	8.6	91.2	0.2	-4.98	0.66	0.81	3.27	3.5	0.003	0.77	0.0	0.04	16.38	0.01	2.236	11.68	0.36	4.9	95.0	0.1	-0.84	1.70	0.66	0.81	2.31	17820	2228	8	0	8	0	0	logfile
✔	6o1V	0606	2021-09-03	2019-02-21	3.2	3.50	—	3.6	0.016	1.83	0.0	0.21	13.60	0.01	1.933	6.26	0.48	4.7	95.3	0.0	-2.71	0.46	0.70	3.04	3.6	0.003	0.71	0.0	0.07	16.34	0.00	1.988	7.94	0.19	2.1	97.9	0.0	0.73	0.77	0.60	0.83	2.58	9711	1179	3	0	28	0	0	logfile
✔	5W9o	8790	2021-09-05	2017-06-23	4.5	4.59	4.45	4.5	0.013	1.67	0.0	0.08	10.49	0.01	1.325	7.67	0.08	3.9	95.4	0.7	1.29	0.73	0.77	—	4.4	0.006	1.18	12.0	0.07	13.21	0.01	1.809	28.27	0.11	7.4	91.9	0.7	-0.37	8.39	0.60	0.53	—	32958	4257	12	0	0	0	0	logfile
✔	6UKJ	20806	2021-09-02	2019-10-05	3.3	3.53	3.32	3.4	0.017	1.38	0.0	0.19	14.30	0.01	2.114	6.29	0.79	4.5	95.1	0.3	-3.21	0.62	0.81	3.08	3.4	0.003	0.66	0.0	0.04	16.03	0.00	2.115	13.02	0.40	4.0	96.0	0.0	0.30	1.54	0.65	0.82	2.31	4625	582	4	0	1	0	0	logfile
✔	6C14	7328	2021-09-03	2018-01-03	4.5	4.15	—	4.0	0.005	1.04	0.0	0.06	9.46	0.01	2.263	5.29	0.27	6.8	93.2	0.0	-4.44	0.55	0.70	—	4.0	0.005	0.82	0.0	0.05	12.11	0.01	2.092	22.47	0.27	5.2	94.8	0.0	-1.88	2.66	0.57	0.72	—	6746	860	4	0	0	0	0	logfile
✔	5WJ9	8841	2021-09-03	2017-07-21	3.49	4.12	—	3.9	0.014	1.23	4.0	0.07	15.02	0.01	2.225	4.08	1.93	9.1	90.7	0.3	-3.89	0.59	0.69	2.66	4.0	0.003	0.86	0.0	0.04	16.58	0.00	2.200	17.55	0.59	5.8	94.2	0.1	-0.61	1.51	0.65	0.79	1.65	15540	1916	8	0	4	0	0	logfile
✔	6DZY	8942	2021-09-02	2018-07-05	4.1	4.52	4.39	4.6	0.008	0.95	4.0	0.08	8.53	0.01	1.386	8.88	1.32	4.7	95.2	0.1	-2.99	0.42	0.61	—	4.5	0.003	0.82	0.0	0.04	13.26	0.00	2.174	16.41	0.00	5.5	94.4	0.1	-0.25	1.93	0.45	0.69	—	7842	988	5	0	4	0	0	logfile
✔	6DRK	8901	2021-09-05	2018-06-12	3.8	4.29	—	4.2	0.010	1.18	4.0	0.07	9.74	0.01	2.150	5.77	0.36	5.9	94.1	0.0	-3.07	0.64	0.74	1.96	4.2	0.004	0.69	0.0	0.04	13.46	0.00	2.233	5.41	1.02	6.7	93.3	0.0	0.56	1.47	0.66	0.78	0.93	33120	5060	4	0	0	0	0	logfile
✔	5W9J	8785	2021-09-05	2017-06-23	4.8	4.91	5.09	4.7	0.013	1.58	0.0	0.07	11.98	0.02	1.881	5.22	0.90	4.0	94.8	1.2	0.53	0.78	0.75	—	4.7	0.003	0.67	0.0	0.04	12.52	0.00	2.158	12.22	0.00	5.1	94.7	0.1	0.33	1.35	0.74	0.68	—	32958	4257	12	0	0	0	0	logfile
✔	6S6V	10107	2021-09-03	2019-07-03	3.5	3.70	—	3.5	0.009	0.91	0.0	0.06	15.37	0.01	1.827	6.23	0.24	7.8	92.2	0.0	-3.61	0.86	0.86	2.78	3.5	0.002	0.56	0.0	0.04	16.09	0.00	1.816	8.22	0.24	4.4	95.6	0.0	-0.04	0.47	0.86	0.86	2.79	11820	1498	8	0	8	0	0	logfile
✔	6PK4	20354	2021-09-03	2019-06-28	3.5	4.11	—	4.0	0.010	1.38	12.0	0.09	11.26	0.01	1.380	11.45	1.44	7.5	91.6	0.9	-4.81	0.69	0.77	2.05	4.0	0.004	0.77	0.0	0.05	14.71	0.01	2.059	15.17	0.51	4.3	95.7	0.0	-0.99	0.94	0.70	0.78	1.82	17876	2236	8	0	8	0	0	logfile
✔	6DRJ	7999	2021-09-05	2018-06-12	3.3	3.80	—	3.7	0.009	1.15	8.0	0.07	10.86	0.01	2.093	5.46	0.14	4.4	95.6	0.0	-3.18	0.67	0.79	1.95	3.7	0.004	0.63	0.0	0.04	14.13	0.00	2.151	4.86	0.49	3.6	96.4	0.0	0.10	1.24	0.70	0.83	1.74	35516	5064	8	0	8	0	0	logfile
✔	6oXL	20220	2021-09-03	2019-05-13	3.5	3.82	3.60	3.7	0.010	1.08	0.0	0.06	9.46	0.01	2.236	6.62	0.06	5.6	94.4	0.0	-5.46	0.81	0.84	3.05	3.7	0.006	0.85	0.0	0.04	13.56	0.00	2.170	9.86	0.13	3.2	96.8	0.0	-0.40	1.36	0.80	0.81	1.60	14413	1808	6	0	7	0	0	logfile
✔	6T72	10389	2021-09-04	2019-10-21	3.7	3.79	—	3.8	0.013	1.64	0.0	0.11	14.69	0.02	2.167	4.27	0.00	2.1	97.9	0.0	-2.53	0.76	0.87	2.40	3.7	0.004	0.60	0.0	0.04	15.01	0.00	2.077	3.64	0.26	3.2	96.8	0.0	1.38	1.25	0.78	0.88	1.84	26278	3388	14	0	210	0	0	logfile
✘	6FYY	4328	2021-09-07	2018-03-12	3.02	3.15	3.10	3.1	0.007	1.33	57.0	0.10	20.55	0.01	0.817	7.34	10.74	8.2	89.1	2.7	-1.95	0.63	0.83	1.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	104316	8066	54	1885	201	0	0	logfile
✔	6o58	0625	2021-09-04	2019-03-01	3.8	4.03	—	3.8	0.005	1.07	0.0	0.06	11.59	0.01	2.271	4.13	0.31	4.5	95.5	0.0	-3.97	0.64	0.77	1.88	3.8	0.004	0.69	0.0	0.04	15.24	0.00	2.193	9.52	0.45	5.4	94.6	0.0	0.42	1.22	0.65	0.79	1.29	20554	2512	18	0	2	0	0	logfile

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