Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7CFS	30346	2021-12-01	2020-06-28	3.56	3.72	—	3.7	0.008	0.93	0.0	0.06	15.88	0.01	1.835	5.64	0.60	5.9	94.1	0.0	-5.35	0.79	0.84	2.85	3.7	0.004	0.69	0.0	0.04	16.64	0.01	2.247	5.90	0.40	3.6	96.4	0.0	-1.69	0.57	0.80	0.84	2.66	9974	1278	6	0	10	0	0	logfile
✔	7JNA	22403	2021-12-01	2020-08-04	3.6	3.74	—	3.8	0.004	0.69	0.0	0.04	13.30	0.03	2.215	11.86	0.00	4.3	95.7	0.0	-3.83	0.63	0.71	1.86	3.8	0.017	1.55	0.0	0.05	16.19	0.01	2.014	15.10	0.18	4.0	95.9	0.1	-0.71	0.84	0.68	0.77	2.33	6432	834	9	0	15	0	0	logfile
✔	7DHi	30681	2021-12-01	2020-11-15	3.26	3.41	—	3.3	0.004	0.76	0.0	0.05	14.45	0.01	2.298	4.37	0.13	5.6	94.4	0.0	-5.36	0.77	0.84	3.51	3.4	0.002	0.61	0.0	0.04	16.25	0.00	2.188	8.41	0.13	4.9	95.1	0.0	-1.42	1.50	0.78	0.86	3.09	7799	1019	6	0	1	2	0	logfile
✔	7A92	11682	2021-12-01	2020-09-01	4.2	4.58	4.29	4.2	0.007	0.83	0.0	0.06	14.45	0.01	2.222	3.86	1.19	5.2	94.7	0.1	-2.44	0.77	0.64	—	4.2	0.003	0.60	0.0	0.04	13.40	0.00	2.079	6.92	0.00	3.1	96.9	0.0	-0.13	0.77	0.89	0.83	—	10040	1231	5	0	10	0	0	logfile
✔	7BSW	30169	2021-12-01	2020-03-31	3.9	3.97	—	3.9	0.006	0.89	0.0	0.21	15.03	0.01	1.719	37.17	0.69	7.4	92.6	0.0	-5.22	0.66	0.79	2.01	3.9	0.003	0.66	0.0	0.04	16.89	0.00	2.192	9.43	0.29	4.4	95.6	0.0	-1.33	0.63	0.66	0.82	1.37	9329	1139	4	0	7	0	0	logfile
✔	6XMF	22257	2021-12-01	2020-06-30	3.1	3.28	—	3.3	0.002	0.56	0.0	0.03	16.46	0.00	2.246	8.52	0.00	6.8	93.2	0.0	-1.78	0.68	0.71	2.25	3.2	0.003	0.61	0.0	0.03	17.72	0.00	2.149	15.63	0.20	9.8	90.2	0.0	-0.48	0.47	0.72	0.76	2.71	7382	627	3	109	1	0	0	logfile
✔	7KJR	22898	2021-12-01	2020-10-26	2.08	2.52	2.15	2.4	0.007	0.89	0.0	0.05	16.44	0.00	2.254	7.60	0.25	1.8	98.2	0.0	1.13	0.68	0.87	5.29	2.4	0.003	0.52	0.0	0.04	15.79	0.00	2.101	9.36	0.74	2.1	97.9	0.0	1.36	0.39	0.67	0.87	4.69	3840	448	8	0	2	122	0	logfile
✘	6YV1	10940	2021-12-01	2020-04-27	3.4	4.09	3.01	3.7	0.002	0.58	0.0	0.04	12.66	0.00	2.272	8.02	1.85	1.0	99.0	0.0	-4.45	0.52	0.77	1.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2496	328	1	0	0	0	0	logfile
✔	7JNC	22404	2021-12-01	2020-08-04	3.73	3.33	—	3.7	0.004	0.64	0.0	0.04	12.88	0.00	2.269	17.30	0.52	5.1	94.9	0.0	-4.01	0.57	0.68	2.03	3.7	0.022	2.20	3.0	0.11	16.17	0.01	1.993	17.78	0.17	3.5	96.5	0.0	-1.13	1.51	0.64	0.75	3.92	6573	861	9	0	15	0	0	logfile
✔	6X12	21986	2021-12-01	2020-05-18	3.52	3.69	—	3.7	0.008	1.08	0.0	0.06	15.87	0.01	2.322	3.01	0.00	2.7	97.3	0.0	-5.29	0.65	0.84	1.43	3.7	0.003	0.65	0.0	0.04	15.91	0.00	2.249	7.77	0.63	2.5	97.5	0.0	0.23	1.19	0.67	0.85	1.33	3059	407	1	0	1	0	0	logfile
✔	6LVF	0992	2021-12-02	2020-02-02	3.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12380	1586	4	0	6	0	0	logfile
✔	6X13	21987	2021-12-01	2020-05-18	3.66	3.77	—	3.8	0.007	1.04	1.0	0.05	16.27	0.01	2.340	4.80	0.31	6.5	93.5	0.0	-3.73	0.64	0.84	1.86	3.8	0.004	0.71	0.0	0.04	16.03	0.01	2.265	9.45	0.00	4.8	95.2	0.0	1.52	0.37	0.64	0.84	1.86	3136	417	1	0	1	0	0	logfile
✔	7D3S	30566	2021-12-01	2020-09-20	2.9	2.73	2.75	2.8	0.004	0.64	0.0	0.04	13.88	0.00	2.237	10.24	0.00	4.0	96.0	0.0	-2.28	0.56	0.75	3.07	2.8	0.003	0.54	0.0	0.04	16.91	0.00	2.107	9.52	1.00	3.5	96.5	0.0	0.93	0.48	0.62	0.79	2.59	8338	1048	6	0	0	0	0	logfile
✔	7KZo	23084	2021-12-01	2020-12-10	3.3	2.88	—	3.3	0.005	0.86	1.0	0.05	15.08	0.01	0.399	13.90	0.29	4.0	96.0	0.0	-1.81	0.77	0.76	2.07	3.3	0.003	0.69	0.0	0.04	16.90	0.00	1.876	11.60	0.45	3.6	96.4	0.0	0.26	1.50	0.78	0.79	1.65	54110	6873	34	8	14	0	0	logfile
✔	7DHR	30682	2021-12-01	2020-11-17	3.8	3.96	—	3.9	0.004	0.86	0.0	0.05	14.18	0.01	2.329	3.85	0.31	9.1	90.8	0.1	-6.33	0.70	0.77	3.13	3.9	0.003	0.63	0.0	0.04	15.40	0.00	2.217	10.28	0.62	8.0	92.0	0.0	-3.58	0.42	0.70	0.77	2.17	7057	977	5	0	1	0	0	logfile
✔	7A8P	11679	2021-12-01	2020-08-30	3.5	3.61	3.44	3.6	0.004	0.52	0.0	0.03	16.07	0.00	2.165	2.80	0.63	2.2	97.8	0.0	0.97	0.73	0.78	1.97	3.6	0.008	1.04	0.0	0.04	17.11	0.01	2.072	9.21	0.25	2.0	98.0	0.0	2.25	0.46	0.74	0.80	1.99	7305	911	1	0	1	0	0	logfile
✔	7DD3	30643	2021-12-01	2020-10-27	3.2	3.57	—	3.6	0.012	1.06	1.0	0.06	11.80	0.01	2.357	4.43	2.31	5.3	94.5	0.1	-3.77	0.65	0.82	3.21	3.6	0.003	0.64	0.0	0.04	14.81	0.00	2.205	8.03	0.46	4.5	95.4	0.1	0.10	0.68	0.62	0.82	1.98	5929	726	3	9	0	0	0	logfile
✔	7K45	22660	2021-12-01	2020-09-14	3.7	3.90	3.76	3.9	0.014	1.41	0.0	0.08	9.47	0.01	2.568	0.18	0.00	2.2	97.8	0.0	0.92	0.79	0.78	4.02	3.9	0.020	1.45	1.0	0.06	14.84	0.01	2.277	8.49	0.00	3.2	96.8	0.0	0.06	1.30	0.80	0.80	2.81	3038	419	4	0	2	0	0	logfile
✔	7BX7	30235	2021-12-01	2020-04-17	2.8	2.94	—	2.9	0.009	0.84	0.0	0.04	12.96	0.00	2.228	15.34	0.00	9.3	90.7	0.0	-5.83	0.40	0.78	6.36	2.9	0.004	0.60	0.0	0.04	13.78	0.00	2.166	11.86	1.72	8.5	91.5	0.0	-5.45	1.13	0.41	0.79	6.15	1896	270	6	0	0	0	0	logfile
✔	7CZB	30508	2021-12-01	2020-09-07	3.8	4.14	—	4.1	0.005	1.12	0.0	0.06	15.72	0.01	2.360	4.78	0.47	12.5	87.5	0.0	-4.95	0.56	0.80	2.30	4.1	0.003	0.91	0.0	0.05	17.03	0.00	2.245	10.91	0.94	10.8	89.2	0.0	-1.60	1.39	0.57	0.79	1.78	6304	776	4	0	0	0	0	logfile

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