Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7K01	22587	2023-04-25	2020-09-02	3.9	4.33	3.91	3.9	0.008	0.85	0.0	0.05	15.05	0.00	2.034	30.22	13.19	14.7	83.6	1.8	-2.01	0.73	0.60	1.26	3.9	0.006	0.80	0.0	0.05	14.82	0.00	2.065	22.10	0.69	11.8	88.0	0.3	-1.20	1.00	0.84	0.83	1.38	21052	2916	10	0	6	0	0	logfile
✔	7RZF	24758	2023-04-23	2021-08-27	3.4	2.25	—	3.5	0.009	1.19	1.0	0.07	12.93	0.01	1.454	14.43	0.41	4.2	95.8	0.0	-4.07	0.65	0.74	2.52	3.5	0.003	0.70	0.0	0.04	15.52	0.00	2.195	10.95	0.12	3.9	96.1	0.0	-0.67	4.10	0.66	0.76	1.75	15584	1902	4	0	0	0	0	logfile
✘	5GL0	9520	2023-04-21	2016-07-07	4.2	4.40	—	4.2	0.018	1.72	17.0	0.10	11.34	0.01	1.957	21.25	0.51	6.5	90.6	2.9	-2.58	0.74	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	111000	15068	12	0	4	0	0	logfile
✔	6W6H	21555	2023-04-28	2020-03-16	3.3	3.65	—	3.5	0.004	0.77	0.0	0.04	15.48	0.00	0.962	9.97	1.39	9.9	89.9	0.2	-4.10	0.84	0.85	2.13	3.5	0.003	0.65	0.0	0.04	16.77	0.00	2.179	8.28	0.92	9.1	90.9	0.0	-1.23	1.21	0.83	0.87	1.92	28427	3615	13	0	38	0	0	logfile
✔	7X9W	33084	2023-04-21	2022-03-16	2.78	2.90	2.88	2.9	0.008	0.84	12.0	0.06	15.86	0.01	2.241	6.77	6.86	3.8	96.2	0.0	-2.46	0.78	0.83	3.91	2.9	0.004	0.64	0.0	0.05	17.40	0.00	2.071	7.90	3.56	2.1	97.9	0.0	-0.73	0.46	0.77	0.84	4.17	59640	7368	72	0	24	48	0	logfile
✔	7KNQ	22954	2023-04-20	2020-11-05	3.4	3.78	—	3.7	0.009	0.92	0.0	0.05	14.56	0.01	2.083	19.58	0.38	11.0	89.0	0.0	-2.88	0.73	0.76	2.09	3.7	0.003	0.70	0.0	0.04	16.02	0.00	2.049	12.91	0.40	5.4	94.6	0.1	-0.89	1.24	0.71	0.76	0.83	37066	4704	8	0	0	0	0	logfile
✔	7RYY	24748	2023-04-23	2021-08-26	4.4	3.68	—	7.0	0.005	1.01	0.0	0.05	11.37	0.01	2.230	5.96	0.59	3.6	96.4	0.0	-4.08	0.63	0.51	—	3.5	0.004	0.81	0.0	0.04	12.68	0.01	2.124	19.08	0.00	5.4	94.6	0.0	-0.19	1.82	0.72	0.73	—	15836	2024	8	0	2	0	0	logfile
✔	7WK6	32560	2023-04-20	2022-01-08	3.67	2.86	—	3.8	0.008	1.07	1.0	0.07	15.40	0.01	2.328	5.81	0.57	4.7	94.9	0.4	-5.05	0.77	0.77	2.23	3.7	0.007	0.94	0.0	0.05	17.87	0.00	2.115	21.26	0.86	5.1	94.9	0.0	-1.19	1.42	0.79	0.79	1.73	6428	791	2	0	0	0	0	logfile
✔	7RZ8	24754	2023-04-24	2021-08-27	4.1	3.82	—	4.0	0.011	1.27	0.0	0.06	16.28	0.01	2.246	5.13	0.93	4.1	95.8	0.1	-4.14	0.66	0.74	—	3.7	0.005	0.75	0.0	0.05	15.19	0.01	2.118	16.55	0.00	4.9	95.1	0.0	-0.31	0.98	0.68	0.78	—	16722	2044	8	0	26	0	0	logfile
✔	7Z1H	14446	2023-04-23	2022-02-24	3.12	4.01	—	3.5	0.016	0.97	2.0	0.04	12.32	0.00	1.830	20.25	0.18	10.8	88.7	0.5	-1.31	0.79	0.79	1.28	3.5	0.016	0.94	2.0	0.04	14.23	0.00	1.692	20.59	0.00	11.7	87.9	0.4	-1.08	0.41	0.79	0.77	1.28	15032	1848	1	0	0	0	0	logfile
✘	3J8H	2807	2023-04-21	2014-10-26	3.8	3.95	—	3.8	0.006	1.31	4.0	0.05	10.89	0.01	1.488	33.49	2.47	5.3	92.8	1.9	-2.06	0.65	0.64	1.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	111160	12796	12	0	2276	0	0	logfile
✔	7AUA	11926	2023-04-22	2020-11-02	2.93	3.12	—	3.1	0.008	0.64	0.0	0.05	12.69	0.00	1.809	1.92	0.00	3.7	96.3	0.0	-0.20	0.79	0.85	4.78	3.1	0.003	0.55	0.0	0.04	14.95	0.00	2.148	4.70	1.07	2.1	97.9	0.0	0.47	2.19	0.81	0.89	3.57	11300	1372	8	2	14	0	0	logfile
✔	8DGF	27422	2023-04-23	2022-06-23	2.9	2.47	3.10	2.7	0.009	1.21	0.0	0.06	14.26	0.01	2.088	1.38	0.53	2.2	97.8	0.0	-0.06	0.48	0.56	2.47	2.4	0.003	0.60	0.0	0.04	16.44	0.00	2.169	6.90	1.76	2.4	97.6	0.0	0.67	0.81	0.50	0.61	1.75	64958	7902	12	0	8	0	0	logfile
✔	6RWL	10041	2023-04-24	2019-06-05	3.36	3.67	3.45	3.6	0.003	0.56	0.0	0.04	16.02	0.00	2.348	2.63	2.86	3.1	96.9	0.0	-3.04	0.70	0.83	2.24	3.6	0.002	0.52	0.0	0.04	18.83	0.00	2.273	5.54	0.23	3.1	96.9	0.0	1.24	1.54	0.71	0.85	2.06	18272	2076	24	86	8	0	0	logfile
✔	7WVN	32854	2023-04-27	2022-02-10	3.4	2.96	—	3.5	0.006	0.83	0.0	0.05	8.23	0.01	2.348	1.91	0.11	3.7	96.2	0.1	-3.13	0.72	0.68	1.19	3.5	0.004	0.76	0.0	0.05	14.62	0.00	2.080	12.93	0.69	3.1	96.9	0.0	-0.23	1.22	0.79	0.78	1.62	24805	3162	3	0	0	0	0	logfile
✘	6PLR	20373	2023-04-23	2019-07-01	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14685	1735	15	0	75	0	0	logfile
✔	7NXF	12638	2023-04-20	2021-03-18	3.1	4.01	3.17	3.6	0.006	0.82	0.0	0.04	14.20	0.01	2.281	9.15	0.00	7.9	92.1	0.0	-0.71	0.60	0.80	1.58	3.7	0.005	0.67	0.0	0.04	15.64	0.00	1.905	9.22	0.44	7.3	92.7	0.0	0.44	1.96	0.59	0.86	1.35	6405	829	1	0	3	0	0	logfile
✔	6VKS	21228	2023-04-26	2020-01-22	3.02	3.41	—	3.4	0.006	0.89	0.0	0.05	15.02	0.01	1.946	8.72	0.00	3.2	96.8	0.0	-3.88	0.74	0.79	2.05	3.3	0.003	0.60	0.0	0.04	15.25	0.00	2.129	7.68	0.32	3.3	96.7	0.0	0.51	1.66	0.75	0.85	2.26	24034	3131	6	0	18	0	0	logfile
✔	7L8D	23230	2023-04-23	2020-12-31	4.6	4.71	4.48	4.5	0.022	1.76	1.0	0.15	10.14	0.02	2.339	2.41	0.00	1.9	98.1	0.0	0.57	0.72	0.77	—	4.5	0.003	0.70	0.0	0.04	12.75	0.00	2.189	13.68	0.00	3.3	96.7	0.0	-0.53	1.41	0.73	0.80	—	15564	1662	49	0	309	0	0	logfile
✔	7L8C	23229	2023-04-23	2020-12-31	3.4	3.54	3.26	3.5	0.026	1.74	5.0	0.16	10.04	0.01	2.049	1.27	0.00	1.7	98.3	0.0	0.69	0.73	0.87	4.33	3.5	0.003	0.60	0.0	0.04	14.27	0.00	2.167	5.39	0.07	2.0	98.0	0.0	-0.01	1.22	0.71	0.86	3.12	15963	1691	56	0	331	0	0	logfile

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