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Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7NH9 | 12321 | 2023-11-15 | 2021-02-10 | 3.03 | 3.58 | — | 3.4 | 0.007 | 0.80 | 0.0 | 0.04 | 14.80 | 0.00 | 2.236 | 12.71 | 3.31 | 11.7 | 88.3 | 0.0 | -2.35 | 0.75 | 0.84 | 2.46 | 3.4 | 0.003 | 0.66 | 0.0 | 0.04 | 16.04 | 0.00 | 2.252 | 11.90 | 0.07 | 9.2 | 90.8 | 0.0 | 0.93 | 0.52 | 0.76 | 0.86 | 2.43 | 13120 | 1635 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DRJ | 7999 | 2023-11-21 | 2018-06-12 | 3.3 | 3.80 | — | 3.7 | 0.007 | 1.13 | 8.0 | 0.07 | 10.90 | 0.01 | 2.093 | 5.57 | 0.14 | 4.4 | 95.6 | 0.0 | -3.18 | 0.67 | 0.79 | 1.95 | 3.7 | 0.002 | 0.59 | 0.0 | 0.04 | 14.03 | 0.00 | 2.183 | 4.74 | 0.39 | 2.7 | 97.3 | 0.0 | 0.35 | 1.22 | 0.68 | 0.82 | 1.64 | 35516 | 5064 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7JYi | 22526 | 2023-11-14 | 2020-08-30 | 3.4 | 3.52 | — | 3.5 | 0.008 | 0.75 | 0.0 | 0.05 | 16.05 | 0.00 | 2.104 | 14.16 | 5.45 | 10.3 | 89.2 | 0.5 | -4.54 | 0.43 | 0.84 | 2.04 | 3.5 | 0.004 | 0.69 | 0.0 | 0.04 | 16.64 | 0.00 | 2.112 | 8.81 | 0.42 | 8.4 | 91.4 | 0.2 | -1.77 | 0.66 | 0.40 | 0.85 | 2.23 | 8807 | 1152 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CNM | 7537 | 2023-11-15 | 2018-03-08 | 3.4 | 3.51 | — | 3.5 | 0.010 | 1.11 | 0.0 | 0.06 | 10.53 | 0.01 | 2.331 | 1.47 | 0.00 | 4.3 | 95.7 | 0.0 | -4.29 | 0.64 | 0.84 | 3.41 | 3.5 | 0.002 | 0.53 | 0.0 | 0.04 | 13.55 | 0.00 | 2.202 | 3.43 | 0.09 | 2.9 | 97.1 | 0.0 | 2.24 | 0.56 | 0.63 | 0.85 | 2.35 | 12541 | 1700 | 12 | 0 | 17 | 0 | 0 | logfile |
✔ | 6PiG | 20350 | 2023-11-20 | 2019-06-26 | 3.5 | 3.54 | 3.59 | 3.5 | 0.014 | 1.76 | 1.0 | 0.09 | 16.07 | 0.00 | 2.173 | 1.98 | 1.58 | 15.2 | 81.4 | 3.5 | -4.85 | 0.60 | 0.76 | 2.54 | 3.5 | 0.003 | 0.79 | 0.0 | 0.04 | 17.26 | 0.01 | 2.067 | 11.20 | 0.36 | 14.8 | 84.7 | 0.5 | -2.91 | 0.60 | 0.65 | 0.79 | 2.18 | 28867 | 3439 | 11 | 60 | 0 | 0 | 0 | logfile |
✔ | 6R8F | 4759 | 2023-11-16 | 2019-04-01 | 3.8 | 3.84 | 3.74 | 3.8 | 0.013 | 1.15 | 0.0 | 0.07 | 10.25 | 0.01 | 2.059 | 3.60 | 0.00 | 11.0 | 89.0 | 0.0 | -5.94 | 0.78 | 0.80 | 3.13 | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 14.82 | 0.00 | 1.955 | 9.45 | 0.60 | 6.7 | 93.3 | 0.0 | -1.02 | 1.36 | 0.79 | 0.80 | 2.19 | 15810 | 2000 | 10 | 0 | 166 | 0 | 0 | logfile |
✔ | 6WMU | 21853 | 2023-11-21 | 2020-04-21 | 3.18 | 3.31 | — | 3.3 | 0.016 | 1.01 | 1.0 | 0.06 | 18.72 | 0.01 | 2.066 | 21.25 | 9.93 | 11.7 | 88.0 | 0.3 | -3.75 | 0.66 | 0.77 | 1.72 | 3.3 | 0.007 | 0.75 | 0.0 | 0.05 | 18.88 | 0.01 | 2.116 | 12.62 | 0.43 | 7.9 | 91.9 | 0.1 | -0.68 | 0.72 | 0.72 | 0.85 | 2.00 | 34094 | 4121 | 13 | 86 | 3 | 0 | 0 | logfile |
✔ | 7YDi | 33748 | 2023-11-15 | 2022-07-04 | 3.98 | 3.84 | 3.72 | 3.8 | 0.003 | 0.70 | 0.0 | 0.05 | 14.65 | 0.00 | 1.938 | 5.91 | 0.67 | 3.8 | 96.2 | 0.0 | -0.82 | 0.64 | 0.62 | 0.76 | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 16.20 | 0.00 | 2.160 | 11.46 | 0.19 | 4.5 | 95.5 | 0.0 | 0.03 | 1.69 | 0.72 | 0.73 | 1.14 | 9675 | 1229 | 5 | 0 | 5 | 0 | 0 | logfile |
✔ | 6S85 | 10116 | 2023-11-17 | 2019-07-08 | 4.2 | 4.30 | — | 4.2 | 0.008 | 1.01 | 3.0 | 0.06 | 19.02 | 0.01 | 1.775 | 18.62 | 1.03 | 7.8 | 91.9 | 0.3 | -3.59 | 0.84 | 0.82 | — | 4.1 | 0.006 | 0.75 | 0.0 | 0.04 | 18.02 | 0.00 | 1.864 | 17.99 | 0.00 | 7.2 | 92.7 | 0.1 | -1.02 | 1.02 | 0.84 | 0.83 | — | 13018 | 1486 | 10 | 63 | 8 | 0 | 0 | logfile |
✔ | 3J81 | 2763 | 2023-11-20 | 2014-08-29 | 4.0 | 4.19 | — | 4.0 | 0.007 | 1.30 | 64.0 | 0.10 | 22.05 | 0.01 | 1.076 | 7.72 | 12.47 | 11.6 | 83.5 | 4.9 | -2.31 | 0.79 | 0.84 | — | 4.0 | 0.004 | 0.80 | 0.0 | 0.04 | 20.75 | 0.01 | 1.810 | 24.19 | 0.84 | 11.1 | 87.5 | 1.4 | -1.88 | 2.08 | 0.79 | 0.82 | — | 83760 | 5686 | 48 | 1876 | 84 | 0 | 0 | logfile |
✔ | 7oL0 | 12974 | 2023-11-21 | 2021-05-18 | 3.0 | 2.88 | 2.88 | 2.9 | 0.010 | 0.88 | 0.0 | 0.06 | 15.67 | 0.01 | 2.073 | 6.01 | 0.06 | 3.0 | 97.0 | 0.0 | -1.45 | 0.73 | 0.84 | 3.95 | 2.9 | 0.005 | 0.59 | 0.0 | 0.04 | 17.77 | 0.00 | 1.964 | 9.87 | 1.24 | 2.6 | 97.4 | 0.0 | 0.33 | 0.39 | 0.74 | 0.87 | 3.32 | 32892 | 3912 | 22 | 79 | 9 | 0 | 0 | logfile |
✔ | 6X4W | 22043 | 2023-11-22 | 2020-05-24 | 3.8 | 4.16 | — | 4.0 | 0.009 | 1.20 | 0.0 | 0.06 | 16.97 | 0.01 | 1.840 | 10.31 | 0.19 | 8.0 | 91.7 | 0.3 | -2.71 | 0.80 | 0.79 | 1.16 | 4.0 | 0.005 | 0.76 | 0.0 | 0.04 | 18.15 | 0.00 | 1.833 | 18.18 | 0.44 | 7.9 | 92.1 | 0.0 | -1.10 | 0.47 | 0.80 | 0.80 | 0.96 | 36021 | 4316 | 11 | 112 | 4 | 0 | 0 | logfile |
✔ | 7LMY | 23442 | 2023-11-21 | 2021-02-06 | 2.4 | 3.32 | 2.45 | 2.9 | 0.005 | 0.77 | 0.0 | 0.04 | 14.25 | 0.01 | 1.987 | 8.17 | 1.89 | 2.7 | 97.3 | 0.0 | 0.96 | 0.80 | 0.76 | 3.08 | 3.0 | 0.003 | 0.50 | 0.0 | 0.04 | 14.57 | 0.00 | 1.959 | 7.23 | 0.45 | 2.6 | 97.4 | 0.0 | 1.70 | 1.18 | 0.88 | 0.87 | 2.88 | 35646 | 4470 | 12 | 0 | 30 | 0 | 0 | logfile |
✔ | 6ZP4 | 11335 | 2023-11-16 | 2020-07-08 | 2.9 | 2.98 | — | 2.6 | 0.007 | 0.92 | 0.0 | 0.05 | 15.90 | 0.01 | 2.079 | 4.90 | 0.33 | 5.3 | 94.7 | 0.1 | -3.82 | 0.84 | 0.81 | 2.89 | 2.6 | 0.006 | 0.73 | 0.0 | 0.04 | 16.51 | 0.00 | 1.870 | 10.90 | 2.42 | 5.5 | 94.4 | 0.0 | -0.46 | 0.45 | 0.89 | 0.89 | 2.57 | 117784 | 10408 | 59 | 1796 | 6 | 0 | 0 | logfile |
✔ | 7K9L | 22754 | 2023-11-15 | 2020-09-29 | 4.9 | 4.39 | — | 4.7 | 0.007 | 1.19 | 0.0 | 0.07 | 15.28 | 0.01 | 2.254 | 9.45 | 3.96 | 3.5 | 96.5 | 0.0 | -1.98 | 0.67 | 0.78 | — | 4.6 | 0.004 | 0.75 | 0.0 | 0.04 | 14.11 | 0.00 | 2.177 | 19.89 | 0.00 | 4.1 | 95.9 | 0.0 | 0.32 | 1.01 | 0.69 | 0.78 | — | 10472 | 1372 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VHM | 31999 | 2023-11-19 | 2021-09-22 | 3.2 | 3.32 | — | 3.3 | 0.004 | 0.66 | 0.0 | 0.05 | 14.39 | 0.01 | 2.124 | 10.68 | 0.00 | 6.6 | 93.4 | 0.0 | -2.95 | 0.73 | 0.80 | 2.94 | 3.3 | 0.006 | 0.64 | 0.0 | 0.05 | 15.42 | 0.00 | 2.149 | 9.85 | 0.36 | 7.3 | 92.7 | 0.0 | -1.83 | 0.29 | 0.74 | 0.85 | 2.81 | 24972 | 3237 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WTZ | 32806 | 2023-11-20 | 2022-02-05 | 3.0 | 2.82 | — | 2.8 | 0.004 | 0.86 | 0.0 | 0.05 | 15.97 | 0.01 | 2.213 | 5.25 | 0.09 | 3.9 | 96.0 | 0.1 | -1.27 | 0.78 | 0.76 | 2.32 | 2.8 | 0.004 | 0.69 | 0.0 | 0.04 | 17.19 | 0.00 | 2.077 | 10.10 | 1.83 | 4.2 | 95.8 | 0.0 | 0.33 | 1.16 | 0.80 | 0.80 | 2.10 | 85113 | 6331 | 36 | 1624 | 2 | 0 | 0 | logfile |
✔ | 6WJJ | 21694 | 2023-11-14 | 2020-04-13 | 3.8 | 3.85 | — | 3.8 | 0.008 | 1.05 | 3.0 | 0.06 | 10.44 | 0.01 | 2.163 | 4.56 | 0.89 | 5.8 | 94.2 | 0.0 | -3.43 | 0.74 | 0.81 | 2.71 | 3.8 | 0.002 | 0.56 | 0.0 | 0.04 | 14.15 | 0.00 | 2.130 | 7.82 | 0.23 | 3.3 | 96.7 | 0.0 | -0.01 | 1.31 | 0.74 | 0.80 | 1.86 | 56908 | 7076 | 24 | 0 | 24 | 0 | 0 | logfile |
✔ | 5KUF | 8289 | 2023-11-18 | 2016-07-13 | 3.8 | 3.80 | — | 3.7 | 0.009 | 1.02 | 0.0 | 0.05 | 8.87 | 0.01 | 2.021 | 29.22 | 0.08 | 15.5 | 84.4 | 0.1 | -5.82 | 0.61 | 0.71 | 1.68 | 3.7 | 0.003 | 0.69 | 0.0 | 0.04 | 13.57 | 0.00 | 2.155 | 13.20 | 0.35 | 5.9 | 94.1 | 0.0 | -1.38 | 1.57 | 0.61 | 0.71 | 1.29 | 23728 | 3000 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 7TCG | 25811 | 2023-11-14 | 2021-12-23 | 3.8 | 3.89 | 3.84 | 3.9 | 0.004 | 1.15 | 0.0 | 0.04 | 15.91 | 0.00 | 2.138 | 5.54 | 0.00 | 7.9 | 92.1 | 0.0 | -0.53 | 0.67 | 0.81 | 1.03 | 3.9 | 0.002 | 0.65 | 0.0 | 0.04 | 16.69 | 0.00 | 2.142 | 5.76 | 0.21 | 7.0 | 93.0 | 0.0 | -0.10 | 0.94 | 0.68 | 0.80 | 1.06 | 8891 | 1123 | 4 | 0 | 1 | 0 | 0 | logfile |