Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7L7U	23219	2023-11-16	2020-12-30	3.8	3.94	3.66	3.9	0.023	1.68	3.0	0.15	10.63	0.02	2.411	1.76	0.00	1.4	98.6	0.0	0.66	0.76	0.83	2.40	3.9	0.004	0.67	0.0	0.05	15.39	0.00	2.010	9.07	0.38	2.0	98.0	0.0	0.07	0.79	0.75	0.83	1.53	15258	1761	36	0	96	0	0	logfile
✔	8D9F	27260	2023-11-16	2022-06-09	2.71	3.74	2.92	3.4	0.010	0.94	0.0	0.06	14.92	0.01	2.015	10.10	0.06	3.3	96.6	0.1	0.50	0.82	0.83	3.13	3.4	0.004	0.66	0.0	0.04	16.47	0.00	2.179	9.50	0.77	2.9	97.1	0.0	1.07	1.17	0.81	0.84	2.77	16163	1912	4	33	4	0	0	logfile
✔	7SNG	25225	2023-11-16	2021-10-28	2.8	3.04	—	3.0	0.004	0.63	2.0	0.04	14.54	0.01	2.201	10.64	0.25	3.3	96.5	0.2	-0.68	0.74	0.85	4.43	3.0	0.002	0.55	0.0	0.04	16.98	0.00	2.182	9.94	0.92	3.1	96.8	0.1	0.19	0.38	0.77	0.89	3.71	15204	1868	8	0	0	104	0	logfile
✔	7SK1	25169	2023-11-13	2021-10-19	3.43	3.92	3.64	4.0	0.009	1.07	0.0	0.06	12.81	0.01	2.254	1.39	0.43	3.8	96.2	0.0	1.09	0.59	0.73	1.99	4.0	0.002	0.61	0.0	0.04	15.85	0.00	2.269	6.72	0.65	4.6	95.4	0.0	0.23	0.57	0.58	0.73	0.84	4291	524	4	0	7	0	0	logfile
✔	7VQ5	32086	2023-11-13	2021-10-19	3.1	3.31	—	3.3	0.009	0.77	0.0	0.05	14.72	0.00	2.110	7.38	0.14	7.4	92.6	0.0	-3.56	0.66	0.84	2.48	3.3	0.003	0.53	0.0	0.04	16.00	0.00	2.132	7.54	0.29	3.5	96.5	0.0	2.12	1.11	0.63	0.83	1.92	6315	800	2	0	1	0	0	logfile
✔	7TX7	26156	2023-11-13	2022-02-07	3.8	4.02	3.76	3.9	0.008	0.76	0.0	0.07	12.94	0.00	2.072	6.28	0.00	1.8	98.2	0.0	3.77	0.44	0.74	1.59	3.9	0.003	0.77	0.0	0.04	16.58	0.00	2.219	9.34	0.33	2.5	97.5	0.0	2.15	1.32	0.46	0.75	1.83	3203	397	1	0	4	0	0	logfile
✔	7ToF	26031	2023-11-14	2022-01-24	3.7	3.97	—	4.0	0.003	0.60	0.0	0.04	15.20	0.01	2.163	16.14	0.12	4.4	95.6	0.0	-0.60	0.67	0.64	1.86	4.0	0.004	0.69	0.0	0.05	17.35	0.00	2.168	19.85	0.49	5.4	94.6	0.0	-0.61	0.64	0.68	0.65	1.24	7588	938	2	0	0	0	0	logfile
✔	6B40	7046	2023-11-16	2017-09-25	4.3	4.48	—	4.4	0.007	1.13	0.0	0.06	16.61	0.01	2.269	8.08	0.00	18.8	81.0	0.2	-5.22	0.76	0.70	—	4.4	0.003	0.80	0.0	0.04	17.81	0.00	2.138	16.06	0.00	15.2	84.8	0.0	-3.12	2.12	0.80	0.77	—	16202	1800	12	100	42	0	0	logfile
✔	7L7T	23218	2023-11-16	2020-12-30	3.7	4.14	3.63	3.9	0.023	1.69	0.0	0.16	10.29	0.01	2.419	0.30	0.00	1.2	98.8	0.0	0.98	0.85	0.85	2.90	3.8	0.005	0.65	0.0	0.04	13.99	0.00	2.225	7.63	0.32	3.2	96.8	0.0	1.05	0.75	0.85	0.85	2.52	15423	1770	39	0	102	0	0	logfile
✔	8A5P	15180	2023-11-16	2022-06-15	3.4	4.19	3.47	3.6	0.011	1.65	3.0	0.10	17.21	0.02	1.816	2.29	0.90	3.3	96.6	0.1	-1.12	0.93	0.90	2.49	3.6	0.003	0.60	0.0	0.04	18.24	0.00	1.910	8.46	0.15	2.6	97.3	0.1	1.75	2.00	0.91	0.87	2.30	13937	1550	10	72	6	0	0	logfile
✔	7VQ4	32085	2023-11-13	2021-10-19	3.2	3.54	—	3.6	0.007	0.74	0.0	0.04	16.10	0.00	2.155	9.59	2.30	6.6	93.4	0.0	-1.96	0.61	0.79	1.10	3.7	0.003	0.69	0.0	0.04	17.32	0.00	2.224	8.97	0.43	4.2	95.8	0.0	2.91	0.79	0.59	0.78	0.16	6306	800	2	0	0	0	0	logfile
✔	7K1V	22630	2023-11-13	2020-09-08	4.6	4.95	—	4.8	0.008	1.12	0.0	0.06	15.77	0.01	2.159	13.77	0.40	11.0	89.0	0.0	-4.04	0.71	0.71	—	4.8	0.003	0.72	0.0	0.04	13.84	0.00	2.160	21.48	0.00	7.3	92.7	0.0	-1.21	2.35	0.70	0.75	—	4971	626	1	0	0	0	0	logfile
✔	6XLY	22252	2023-11-13	2020-06-29	3.1	4.00	3.11	3.5	0.006	0.95	0.0	0.05	15.47	0.01	2.336	4.00	0.97	4.3	95.7	0.0	-5.77	0.86	0.77	1.71	3.6	0.003	0.60	0.0	0.04	15.66	0.00	2.173	11.49	0.00	2.6	97.4	0.0	0.45	0.60	0.88	0.83	1.64	5111	646	1	0	1	0	0	logfile
✔	7SQU	25395	2023-11-17	2021-11-06	2.6	3.28	2.56	3.0	0.010	0.70	0.0	0.05	15.78	0.01	2.259	1.30	1.04	2.5	97.5	0.0	1.39	0.79	0.86	3.71	3.0	0.003	0.57	0.0	0.04	16.16	0.00	2.211	5.35	0.63	1.1	98.9	0.0	1.27	0.68	0.79	0.87	2.82	17856	2292	12	0	0	0	0	logfile
✔	7QLA	14066	2023-11-14	2021-12-20	3.85	3.91	3.77	3.9	0.003	0.62	0.0	0.04	13.83	0.00	2.117	13.19	0.00	6.4	93.6	0.0	-1.33	0.72	0.76	1.18	3.8	0.003	0.76	0.0	0.04	15.73	0.00	2.136	14.14	0.41	5.3	94.7	0.0	-0.81	0.52	0.73	0.76	1.64	6837	874	2	0	0	0	0	logfile
✔	6E0G	8947	2023-11-15	2018-07-06	2.9	2.97	—	3.0	0.010	1.03	0.0	0.06	10.04	0.01	2.030	9.03	0.00	6.7	92.6	0.6	-3.72	0.62	0.71	2.41	3.0	0.004	0.72	0.0	0.05	14.17	0.00	2.174	17.04	2.54	6.6	93.4	0.0	-0.92	1.63	0.61	0.73	2.57	12910	1650	10	0	0	0	0	logfile
✔	5MBV	3460	2023-11-18	2016-11-08	3.8	4.14	—	3.8	0.002	0.51	0.0	0.04	10.21	0.00	2.172	7.06	0.74	4.7	95.2	0.1	-3.37	0.87	0.81	0.98	3.8	0.004	0.71	0.0	0.04	13.50	0.00	2.114	12.19	0.23	3.9	96.0	0.0	1.12	0.89	0.88	0.83	1.41	24118	3014	5	0	0	0	0	logfile
✔	6QQ6	4619	2023-11-15	2019-02-17	3.3	3.40	—	3.4	0.007	1.08	2.0	0.05	15.09	0.01	1.924	5.07	0.00	6.4	93.6	0.0	-5.08	0.67	0.80	2.41	3.4	0.003	0.64	0.0	0.04	15.44	0.00	2.011	9.01	0.09	5.7	94.3	0.0	-0.19	1.34	0.69	0.84	2.09	12123	1486	6	0	13	18	0	logfile
✔	7JWY	22515	2023-11-19	2020-08-26	2.5	2.64	2.53	2.6	0.011	1.20	0.0	0.07	13.92	0.01	2.248	2.44	0.11	6.1	93.9	0.0	-2.72	0.75	0.83	3.94	2.6	0.003	0.60	0.0	0.05	15.19	0.00	2.125	4.26	0.61	3.4	96.6	0.0	-0.06	0.40	0.74	0.86	3.24	25860	3178	26	0	64	119	0	logfile
✔	7F24	31427	2023-11-15	2021-06-10	4.16	4.05	—	4.0	0.009	1.05	0.0	0.06	15.53	0.01	2.076	24.77	0.65	5.1	94.8	0.1	-2.40	0.69	0.76	—	4.0	0.003	0.72	0.0	0.05	14.76	0.00	2.180	18.15	0.26	3.8	96.2	0.0	0.02	1.38	0.69	0.75	—	7165	900	6	0	2	0	0	logfile

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