Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PiK	13439	2023-04-23	2021-08-20	2.68	2.96	2.75	2.9	0.003	0.61	0.0	0.04	19.30	0.00	2.284	3.33	0.08	2.9	97.1	0.0	0.06	0.73	0.79	3.31	2.9	0.003	0.58	0.0	0.04	21.11	0.00	2.102	4.08	1.73	2.9	97.1	0.0	0.60	0.33	0.73	0.82	2.74	15475	1624	7	126	0	0	0	logfile
✘	6Z5R	11080	2023-04-27	2020-05-27	2.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25048	2336	72	0	105	3	0	logfile
✔	7WJN	32546	2023-04-22	2022-01-07	3.3	3.46	—	3.4	0.004	0.59	0.0	0.04	10.18	0.00	2.235	2.90	0.58	4.1	95.9	0.0	2.06	0.67	0.82	2.37	3.4	0.004	0.56	0.0	0.04	13.94	0.00	2.231	5.48	0.29	5.4	94.6	0.0	2.02	1.17	0.68	0.85	1.83	13054	1616	4	0	4	0	0	logfile
✔	8DD3	27333	2023-04-24	2022-06-17	2.9	2.70	2.96	3.1	0.005	0.82	0.0	0.05	12.76	0.00	2.021	6.29	0.00	3.7	96.3	0.0	0.77	0.77	0.85	4.03	3.1	0.003	0.64	0.0	0.04	15.39	0.00	2.145	5.77	1.96	2.8	97.2	0.0	1.18	1.18	0.76	0.87	3.47	17459	2121	17	0	28	0	0	logfile
✔	7LUE	23521	2023-04-23	2021-02-22	2.9	3.08	—	3.1	0.003	0.49	0.0	0.04	10.43	0.00	2.200	5.63	0.86	1.7	98.3	0.0	0.33	0.73	0.82	3.96	3.0	0.006	0.63	0.0	0.05	15.37	0.00	2.079	9.53	3.11	2.8	97.2	0.0	-0.10	1.16	0.69	0.82	3.55	15018	1947	9	0	0	0	0	logfile
✔	7S9V	24938	2023-04-23	2021-09-21	3.3	3.25	—	3.4	0.007	0.86	0.0	0.05	13.96	0.01	2.257	2.04	0.00	5.1	94.9	0.0	-1.75	0.83	0.82	2.23	3.4	0.002	0.53	0.0	0.04	15.36	0.00	2.200	3.70	0.20	3.1	96.9	0.0	-0.13	1.19	0.83	0.83	2.05	14286	1825	3	0	1	0	0	logfile
✔	4Ui9	2924	2023-04-23	2015-03-27	3.6	3.87	—	3.6	0.016	1.97	124.0	0.11	17.96	0.01	0.849	19.88	11.86	5.3	92.8	1.9	-1.90	0.85	0.73	1.60	3.6	0.003	0.81	0.0	0.04	17.07	0.00	2.102	15.06	0.42	5.4	94.2	0.4	0.87	3.18	0.89	0.83	1.17	66453	8472	25	0	5	0	0	logfile
✔	7MiL	23855	2023-04-26	2021-04-17	3.86	3.21	—	3.2	0.007	1.17	0.0	0.05	12.79	0.01	2.304	2.86	0.68	4.4	95.4	0.2	-5.90	0.75	0.77	2.34	3.2	0.002	0.62	0.0	0.04	15.36	0.00	2.074	7.05	0.26	3.9	96.1	0.0	-0.93	1.53	0.75	0.78	1.91	21753	2624	8	0	9	0	0	logfile
✔	7KGG	22869	2023-04-26	2020-10-16	2.97	2.88	—	2.9	0.006	0.92	3.0	0.05	14.03	0.01	2.108	4.66	1.09	1.0	99.0	0.0	2.20	0.71	0.81	2.31	2.9	0.004	0.61	0.0	0.04	17.14	0.00	2.158	6.31	2.03	1.4	98.6	0.0	1.43	1.16	0.73	0.85	2.19	23677	3060	6	0	9	0	0	logfile
✔	7ABR	11707	2023-04-28	2020-09-08	3.7	3.80	—	3.7	0.011	1.09	0.0	0.05	14.93	0.00	2.066	19.60	0.51	9.6	90.1	0.2	-3.56	0.86	0.83	1.86	3.7	0.003	0.68	0.0	0.04	16.46	0.00	2.104	14.20	0.24	7.0	93.0	0.0	0.10	0.65	0.85	0.82	1.17	27209	3419	13	0	37	0	0	logfile
✔	6RWE	10038	2023-04-20	2019-06-04	3.0	3.12	—	3.7	0.009	1.02	1.0	0.06	13.12	0.01	1.975	6.33	0.73	7.4	92.5	0.1	-4.84	0.44	0.32	0.00	3.1	0.008	1.06	0.0	0.06	18.26	0.01	1.845	18.12	2.92	7.6	92.3	0.0	-2.05	2.44	0.76	0.81	1.72	53719	6454	26	95	8	0	0	logfile
✔	7SiL	25143	2023-04-22	2021-10-14	2.7	1.97	—	1.5	0.004	0.70	0.0	0.05	13.66	0.00	2.160	6.65	0.15	2.1	97.9	0.0	0.60	0.75	0.72	3.10	1.6	0.003	0.58	0.0	0.04	16.10	0.00	2.167	8.36	1.77	2.8	97.2	0.0	0.57	0.39	0.77	0.78	2.87	12924	1564	8	0	34	0	0	logfile
✔	7USC	26732	2023-04-26	2022-04-25	3.0	3.26	2.98	3.1	0.007	0.62	0.0	0.04	14.12	0.00	2.130	6.55	0.00	3.0	97.0	0.0	1.36	0.90	0.87	2.78	3.1	0.003	0.53	0.0	0.04	16.28	0.00	2.215	4.76	0.91	1.4	98.6	0.0	2.95	0.50	0.91	0.90	2.32	21709	2673	5	0	0	0	0	logfile
✔	7KGH	22870	2023-04-26	2020-10-16	3.79	3.35	—	3.4	0.005	0.82	3.0	0.05	14.35	0.01	1.910	9.42	0.97	1.7	98.3	0.0	1.37	0.56	0.71	1.27	3.4	0.003	0.65	0.0	0.04	16.04	0.00	2.172	10.71	0.39	2.1	97.9	0.0	1.23	1.19	0.59	0.72	1.04	23505	3060	6	0	5	0	0	logfile
✔	7DUW	30869	2023-04-22	2021-01-12	2.96	2.75	—	3.0	0.008	1.02	0.0	0.05	16.61	0.01	2.162	13.66	0.15	4.0	96.0	0.0	1.16	0.78	0.82	3.01	3.0	0.003	0.62	0.0	0.04	16.53	0.01	2.176	13.28	1.22	4.0	96.0	0.0	1.11	2.27	0.78	0.84	2.32	13276	1640	6	0	12	2	0	logfile
✔	7B5R	12048	2023-04-22	2020-12-07	3.8	4.08	3.77	3.9	0.006	0.81	0.0	0.05	14.43	0.00	2.001	16.73	0.00	9.3	90.7	0.0	-1.41	0.85	0.81	1.55	3.9	0.003	0.64	0.0	0.04	16.00	0.00	2.185	12.98	0.39	6.3	93.7	0.0	-0.32	1.20	0.85	0.81	1.31	11606	1430	7	0	0	0	0	logfile
✔	7JVC	22506	2023-04-29	2020-08-20	3.3	3.50	3.41	3.4	0.013	1.42	0.0	0.09	9.63	0.01	2.428	0.97	0.13	2.3	97.6	0.1	0.71	0.78	0.78	3.47	3.4	0.004	0.64	0.0	0.05	12.95	0.00	2.230	5.01	0.08	2.8	97.2	0.0	0.75	1.21	0.81	0.84	3.07	29562	4272	27	0	66	0	0	logfile
✘	8AYH	15713	2023-04-25	2022-09-02	3.35	3.45	3.40	3.4	0.007	0.91	0.0	0.06	14.44	0.01	2.114	5.00	0.65	6.5	93.4	0.1	-4.12	0.83	0.85	2.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19109	2414	5	0	2	0	0	logfile
✔	6WBF	21588	2023-04-25	2020-03-26	2.83	2.57	—	3.0	0.007	0.83	0.0	0.04	17.10	0.01	2.183	11.63	0.38	5.0	95.0	0.0	-1.45	0.44	0.62	2.99	3.0	0.005	0.66	0.0	0.04	17.02	0.00	2.227	12.29	2.72	4.0	96.0	0.0	1.20	1.28	0.62	0.79	3.16	19712	2408	14	0	49	0	0	logfile
✔	7MR3	23955	2023-04-26	2021-05-07	3.6	4.01	—	3.9	0.005	0.83	0.0	0.05	16.39	0.01	2.250	5.33	0.00	6.5	93.5	0.0	-1.62	0.83	0.82	1.78	3.9	0.002	0.59	0.0	0.04	17.78	0.00	2.192	8.70	0.08	5.4	94.6	0.0	0.26	0.31	0.83	0.83	1.25	23615	2854	5	40	0	0	0	logfile

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