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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8EJ5 | 28176 | 2024-03-10 | 2022-09-16 | 4.9 | 4.58 | 4.63 | 4.6 | 0.012 | 1.52 | 1.0 | 0.09 | 12.69 | 0.01 | 2.466 | 13.82 | 3.27 | 2.0 | 97.2 | 0.8 | 1.40 | 0.43 | 0.64 | — | 4.5 | 0.003 | 0.74 | 0.0 | 0.04 | 13.77 | 0.00 | 2.116 | 17.17 | 0.00 | 4.3 | 95.5 | 0.1 | 0.29 | 1.39 | 0.46 | 0.75 | — | 5818 | 727 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UT1 | 26744 | 2024-03-21 | 2022-04-26 | 3.8 | 4.42 | 3.91 | 4.1 | 0.003 | 0.55 | 0.0 | 0.04 | 20.16 | 0.00 | 2.148 | 11.32 | 0.00 | 3.8 | 96.2 | 0.0 | 0.17 | 0.82 | 0.81 | 1.73 | 4.1 | 0.004 | 0.63 | 0.0 | 0.04 | 21.51 | 0.00 | 2.040 | 14.28 | 2.57 | 5.1 | 94.9 | 0.0 | 0.23 | 0.44 | 0.82 | 0.83 | 1.67 | 31319 | 3147 | 40 | 298 | 12 | 0 | 0 | logfile |
✔ | 7MQR | 23950 | 2024-03-16 | 2021-05-06 | 4.1 | 4.43 | 4.11 | 4.2 | 0.007 | 1.32 | 0.0 | 0.07 | 15.73 | 0.01 | 2.382 | 3.72 | 0.60 | 9.7 | 89.9 | 0.3 | -3.42 | 0.85 | 0.80 | — | 4.2 | 0.003 | 0.64 | 0.0 | 0.05 | 13.82 | 0.00 | 2.235 | 10.79 | 0.00 | 8.1 | 91.6 | 0.2 | -1.07 | 0.46 | 0.85 | 0.82 | — | 14878 | 1810 | 12 | 0 | 20 | 0 | 0 | logfile |
✔ | 5oiK | 3817 | 2024-03-23 | 2017-07-18 | 3.7 | 4.15 | 3.66 | 3.6 | 0.011 | 1.07 | 0.0 | 0.06 | 12.58 | 0.01 | 1.841 | 11.63 | 0.33 | 4.3 | 95.5 | 0.2 | -3.26 | 0.89 | 0.83 | 2.24 | 3.7 | 0.004 | 0.73 | 0.0 | 0.04 | 15.21 | 0.00 | 1.984 | 13.65 | 1.79 | 4.6 | 95.4 | 0.0 | 0.45 | 2.05 | 0.89 | 0.85 | 1.53 | 37988 | 4513 | 23 | 106 | 9 | 0 | 0 | logfile |
✘ | 6NR3 | 0488 | 2024-03-19 | 2019-01-22 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25180 | 3232 | 8 | 0 | 196 | 0 | 0 | logfile |
✔ | 7FB3 | 31513 | 2024-03-19 | 2021-07-08 | 3.1 | 3.73 | — | 3.7 | 0.003 | 0.65 | 0.0 | 0.04 | 14.25 | 0.00 | 2.114 | 9.15 | 0.23 | 8.2 | 91.8 | 0.0 | -4.11 | 0.74 | 0.81 | 2.06 | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 15.89 | 0.00 | 2.103 | 8.69 | 1.91 | 6.5 | 93.5 | 0.0 | -1.35 | 1.43 | 0.72 | 0.80 | 1.96 | 22920 | 2936 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Z14 | 14440 | 2024-03-16 | 2022-02-24 | 3.15 | 3.57 | — | 3.5 | 0.004 | 0.72 | 1.0 | 0.05 | 14.57 | 0.00 | 2.128 | 10.06 | 0.00 | 4.4 | 95.6 | 0.0 | -0.09 | 0.62 | 0.79 | 3.59 | 3.5 | 0.003 | 0.64 | 2.0 | 0.04 | 15.06 | 0.00 | 2.213 | 9.65 | 2.15 | 3.6 | 96.4 | 0.0 | 0.44 | 1.20 | 0.64 | 0.82 | 3.29 | 15856 | 1913 | 13 | 0 | 28 | 0 | 0 | logfile |
✘ | 7EJ8 | 31156 | 2024-03-11 | 2021-04-01 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8647 | 1100 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 6NY1 | 8994 | 2024-03-14 | 2019-02-10 | 4.2 | 4.56 | — | 4.3 | 0.007 | 1.11 | 0.0 | 0.06 | 23.73 | 0.01 | 2.099 | 9.52 | 0.33 | 18.6 | 81.0 | 0.4 | -4.84 | 0.80 | 0.80 | — | 4.4 | 0.003 | 0.72 | 0.0 | 0.04 | 22.60 | 0.00 | 2.135 | 16.33 | 0.00 | 16.7 | 83.2 | 0.1 | -2.31 | 0.55 | 0.79 | 0.78 | — | 9911 | 783 | 4 | 154 | 121 | 0 | 0 | logfile |
✔ | 7L0Q | 23100 | 2024-03-11 | 2020-12-12 | 4.3 | 4.28 | 4.01 | 4.2 | 0.007 | 1.07 | 1.0 | 0.06 | 14.95 | 0.01 | 2.196 | 7.90 | 0.70 | 6.2 | 93.5 | 0.3 | -3.51 | 0.62 | 0.68 | — | 4.2 | 0.003 | 0.72 | 0.0 | 0.04 | 14.25 | 0.00 | 2.134 | 16.75 | 0.12 | 4.7 | 95.2 | 0.1 | -0.54 | 1.14 | 0.64 | 0.73 | — | 7891 | 1002 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UZ3 | 20951 | 2024-03-14 | 2019-11-14 | 3.5 | 3.88 | — | 3.8 | 0.022 | 1.33 | 3.0 | 0.15 | 20.90 | 0.01 | 1.260 | 32.37 | 1.05 | 11.2 | 88.5 | 0.4 | -3.89 | 0.42 | 0.70 | 1.32 | 3.8 | 0.003 | 0.82 | 0.0 | 0.04 | 17.34 | 0.00 | 2.173 | 16.03 | 2.85 | 6.6 | 93.2 | 0.2 | 0.01 | 1.26 | 0.41 | 0.69 | 0.71 | 9446 | 1126 | 5 | 0 | 25 | 0 | 0 | logfile |
✔ | 7L0S | 23102 | 2024-03-11 | 2020-12-12 | 4.5 | 4.35 | 4.13 | 4.2 | 0.008 | 1.34 | 2.0 | 0.08 | 13.52 | 0.01 | 2.107 | 9.65 | 1.39 | 6.0 | 94.0 | 0.0 | -3.19 | 0.61 | 0.63 | — | 4.2 | 0.004 | 0.81 | 0.0 | 0.05 | 13.28 | 0.00 | 2.097 | 17.20 | 0.00 | 4.4 | 95.6 | 0.0 | -0.01 | 3.57 | 0.64 | 0.73 | — | 7906 | 1001 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WNX | 32634 | 2024-03-15 | 2022-01-20 | 3.36 | 3.85 | — | 3.7 | 0.033 | 0.94 | 0.0 | 0.18 | 14.67 | 0.00 | 2.209 | 8.77 | 0.50 | 8.2 | 91.5 | 0.3 | -2.32 | 0.64 | 0.83 | 1.69 | 3.7 | 0.005 | 0.77 | 0.0 | 0.09 | 15.41 | 0.01 | 1.772 | 16.92 | 1.50 | 8.1 | 91.9 | 0.0 | -1.84 | 0.31 | 0.66 | 0.85 | 1.55 | 5643 | 734 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7TET | 25852 | 2024-03-20 | 2022-01-05 | 4.45 | 6.94 | 4.54 | 4.4 | 0.005 | 1.03 | 0.0 | 0.06 | 14.45 | 0.01 | 2.224 | 9.44 | 0.78 | 10.6 | 88.9 | 0.5 | -4.42 | 0.84 | 0.83 | — | 4.3 | 0.003 | 0.71 | 0.0 | 0.04 | 13.47 | 0.00 | 2.122 | 21.02 | 0.00 | 10.5 | 89.3 | 0.2 | -1.94 | 0.61 | 0.83 | 0.85 | — | 28088 | 3563 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oMF | 20090 | 2024-03-21 | 2019-04-18 | 3.26 | 3.79 | — | 3.7 | 0.012 | 1.03 | 1.0 | 0.06 | 19.65 | 0.01 | 1.800 | 9.63 | 12.34 | 7.2 | 92.6 | 0.2 | -4.28 | 0.70 | 0.72 | 1.43 | 3.7 | 0.003 | 0.83 | 2.0 | 0.04 | 19.22 | 0.00 | 2.044 | 12.17 | 4.95 | 5.9 | 94.1 | 0.0 | -1.15 | 0.57 | 0.72 | 0.75 | 1.13 | 30251 | 3616 | 10 | 92 | 3 | 0 | 0 | logfile |
✔ | 6S3S | 10096 | 2024-03-15 | 2019-06-25 | 4.1 | 4.29 | 3.71 | 4.1 | 0.007 | 0.87 | 0.0 | 0.05 | 14.29 | 0.01 | 2.141 | 18.71 | 0.07 | 7.8 | 91.9 | 0.4 | -3.54 | 0.74 | 0.83 | — | 4.1 | 0.004 | 0.87 | 0.0 | 0.04 | 14.07 | 0.00 | 2.123 | 17.45 | 0.00 | 5.5 | 94.3 | 0.2 | 0.72 | 0.86 | 0.74 | 0.82 | — | 12321 | 1569 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K65 | 22689 | 2024-03-11 | 2020-09-18 | 3.4 | 3.95 | 3.54 | 3.9 | 0.016 | 0.86 | 0.0 | 0.07 | 14.99 | 0.00 | 2.213 | 8.32 | 0.00 | 2.9 | 97.1 | 0.0 | -1.91 | 0.54 | 0.76 | 2.44 | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 16.37 | 0.00 | 2.178 | 13.32 | 2.65 | 5.7 | 94.3 | 0.0 | 0.56 | 0.52 | 0.53 | 0.76 | 1.86 | 8796 | 1120 | 4 | 0 | 11 | 0 | 0 | logfile |
✔ | 6PQP | 20450 | 2024-03-18 | 2019-07-09 | 3.06 | 3.46 | 3.03 | 3.4 | 0.012 | 1.29 | 0.0 | 0.23 | 21.82 | 0.01 | 2.132 | 8.72 | 0.19 | 4.3 | 95.7 | 0.0 | -3.28 | 0.74 | 0.82 | 3.00 | 3.4 | 0.002 | 0.58 | 0.0 | 0.04 | 17.62 | 0.00 | 2.157 | 6.06 | 1.92 | 2.5 | 97.5 | 0.0 | 1.87 | 2.26 | 0.74 | 0.85 | 2.20 | 20492 | 2460 | 12 | 0 | 36 | 0 | 0 | logfile |
✔ | 7FB0 | 31511 | 2024-03-19 | 2021-07-08 | 3.4 | 4.00 | — | 3.9 | 0.010 | 0.88 | 0.0 | 0.05 | 14.09 | 0.01 | 1.931 | 19.74 | 0.47 | 11.5 | 88.5 | 0.0 | -4.69 | 0.77 | 0.80 | 1.95 | 3.9 | 0.004 | 0.62 | 0.0 | 0.04 | 15.34 | 0.00 | 2.090 | 10.79 | 2.73 | 5.5 | 94.5 | 0.0 | -1.24 | 0.49 | 0.77 | 0.80 | 1.66 | 22876 | 2926 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ZDW | 14675 | 2024-03-14 | 2022-03-29 | 3.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9039 | 1159 | 2 | 0 | 3 | 0 | 0 | logfile |