Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Y9U	33692	2023-09-28	2022-06-26	3.3	3.48	3.23	3.5	0.011	1.27	2.0	0.06	9.98	0.01	2.311	3.19	0.00	5.3	94.7	0.0	-6.23	0.60	0.84	3.22	3.5	0.003	0.63	0.0	0.04	13.73	0.00	2.158	4.60	0.24	3.6	96.4	0.0	-1.82	0.62	0.59	0.84	2.56	7748	988	6	0	2	0	0	logfile
✘	7YJ4	33871	2023-09-29	2022-07-19	3.19	3.39	3.21	3.4	0.004	0.67	0.0	0.05	14.73	0.01	2.175	9.63	1.55	5.5	94.4	0.1	-0.72	0.60	0.73	1.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8985	1154	7	0	0	0	0	logfile
✔	7S06	24785	2023-09-28	2021-08-30	3.3	3.59	3.40	3.6	0.004	0.66	0.0	0.05	15.06	0.00	2.199	7.68	0.00	6.2	93.8	0.0	0.97	0.65	0.78	2.56	3.6	0.003	0.64	0.0	0.05	17.38	0.00	2.229	7.74	0.46	5.9	94.1	0.0	0.92	1.07	0.69	0.83	2.34	7862	918	8	0	14	0	0	logfile
✔	7SAU	24957	2023-09-28	2021-09-23	3.0	2.41	2.77	2.7	0.005	0.61	0.0	0.04	13.77	0.01	2.122	6.13	0.15	5.1	94.9	0.0	0.64	0.61	0.84	3.01	2.7	0.003	0.55	0.0	0.04	17.55	0.00	2.131	7.16	1.21	4.5	95.5	0.0	2.39	0.54	0.60	0.84	2.26	6317	791	7	0	0	0	0	logfile
✔	7LMS	23441	2023-09-28	2021-02-05	3.5	4.13	3.61	4.0	0.019	1.52	0.0	0.09	10.07	0.01	2.432	0.41	0.00	0.2	99.8	0.0	0.57	0.81	0.83	3.45	4.0	0.002	0.59	0.0	0.04	14.69	0.00	2.183	6.65	0.38	1.5	98.5	0.0	0.72	1.43	0.74	0.82	2.22	4947	613	4	0	1	0	0	logfile
✔	5oYG	3861	2023-09-30	2017-09-08	4.06	4.29	4.02	4.1	0.007	1.27	10.0	0.10	12.53	0.01	2.282	5.95	1.98	6.9	93.1	0.0	-3.35	0.68	0.83	—	4.1	0.004	0.73	0.0	0.04	12.60	0.00	2.130	11.47	0.00	6.0	94.0	0.0	0.56	0.84	0.68	0.82	—	11596	1418	2	0	0	0	0	logfile
✔	7CKR	30391	2023-09-27	2020-07-18	3.0	3.32	—	3.4	0.009	1.22	9.0	0.09	17.22	0.01	1.896	18.09	11.04	8.0	91.9	0.2	-2.89	0.45	0.60	2.22	3.3	0.003	0.78	0.0	0.05	17.05	0.01	2.178	14.60	3.58	4.1	95.9	0.0	0.75	1.85	0.53	0.73	1.92	4094	597	3	0	1	0	0	logfile
✔	7EUo	31323	2023-09-29	2021-05-18	2.9	3.61	2.97	3.5	0.004	0.65	0.0	0.05	13.75	0.00	2.198	6.82	0.00	4.3	95.7	0.0	-0.21	0.63	0.82	3.21	3.5	0.005	0.63	0.0	0.04	16.29	0.00	2.116	8.05	2.79	4.2	95.8	0.0	0.19	0.39	0.60	0.80	2.63	8950	1138	7	0	2	0	0	logfile
✔	7CQi	30441	2023-09-29	2020-08-11	3.2	3.33	—	3.3	0.012	1.51	5.0	0.09	16.83	0.01	0.997	19.68	13.06	10.7	88.6	0.7	-5.50	0.71	0.85	3.34	3.3	0.002	0.67	0.0	0.04	16.25	0.00	2.078	6.94	0.42	5.9	94.0	0.1	-1.69	2.28	0.71	0.86	2.51	8881	1117	6	0	2	0	0	logfile
✔	8EF9	28075	2023-09-28	2022-09-08	2.4	2.51	2.38	2.5	0.013	0.84	0.0	0.05	18.48	0.01	1.958	9.51	0.00	5.8	94.0	0.2	-0.41	0.69	0.76	2.68	2.5	0.003	0.57	0.0	0.04	19.84	0.00	1.905	11.65	0.97	5.6	94.4	0.0	0.31	0.34	0.69	0.78	2.64	5240	599	4	26	2	0	0	logfile
✘	7SAX	24958	2023-09-28	2021-09-23	3.0	2.60	2.97	3.0	0.007	0.66	0.0	0.04	13.54	0.00	2.174	5.46	0.00	3.3	96.7	0.0	1.22	0.58	0.85	2.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5305	689	7	0	0	0	0	logfile
✔	7X8S	33058	2023-09-29	2022-03-14	3.09	3.25	—	3.2	0.020	0.81	0.0	0.29	15.74	0.00	2.155	9.12	0.22	3.4	96.5	0.1	0.09	0.65	0.76	2.35	3.2	0.003	0.92	0.0	0.16	16.50	0.00	2.153	11.15	0.33	3.5	96.5	0.0	0.34	0.32	0.63	0.78	2.18	8480	1052	5	0	1	0	0	logfile
✔	7N0K	24107	2023-09-28	2021-05-25	3.5	4.16	—	4.1	0.003	0.56	0.0	0.03	18.36	0.00	2.238	8.16	7.46	1.0	99.0	0.0	-2.20	0.63	0.77	1.65	4.1	0.003	0.61	0.0	0.03	19.19	0.00	2.266	8.55	0.93	2.3	97.7	0.0	3.43	0.71	0.60	0.75	0.87	5154	626	2	0	0	0	0	logfile
✔	7L0P	23099	2023-09-28	2020-12-12	4.1	3.94	3.91	4.0	0.006	1.06	1.0	0.06	15.23	0.01	2.231	8.45	0.53	6.8	92.9	0.3	-3.81	0.56	0.72	—	4.0	0.003	0.72	0.0	0.04	14.58	0.00	2.155	16.76	0.00	5.5	94.4	0.1	-0.54	1.06	0.60	0.74	—	6953	888	5	0	0	0	0	logfile
✔	7Y4S	33606	2023-09-28	2022-06-16	3.5	3.72	3.47	3.8	0.004	0.74	0.0	0.04	12.74	0.01	2.373	5.20	0.46	2.9	97.1	0.0	1.47	0.69	0.77	3.18	3.8	0.003	0.59	0.0	0.04	15.07	0.00	2.245	9.12	0.69	2.5	97.5	0.0	2.64	1.58	0.73	0.79	2.96	4940	686	2	0	0	0	0	logfile
✔	7NNT	12483	2023-09-28	2021-02-25	3.4	3.53	3.51	3.5	0.005	0.66	0.0	0.05	13.72	0.00	2.218	6.31	0.00	2.2	97.8	0.0	-0.55	0.67	0.82	2.48	3.5	0.004	0.55	0.0	0.04	15.65	0.00	2.225	8.18	0.36	2.1	97.9	0.0	0.34	0.28	0.68	0.84	2.10	7666	979	4	0	0	0	0	logfile
✔	7DA5	30623	2023-09-27	2020-10-14	3.3	3.66	—	3.8	0.008	1.21	10.0	0.09	16.47	0.01	1.673	16.04	10.06	9.1	90.6	0.3	-3.63	0.43	0.58	1.81	3.7	0.004	0.78	0.0	0.04	16.11	0.00	2.233	8.41	0.91	5.1	94.9	0.0	0.00	1.49	0.49	0.71	2.09	4013	591	2	0	0	0	0	logfile
✔	7EVY	31341	2023-09-30	2021-05-24	2.98	3.64	—	3.6	0.017	0.62	0.0	0.16	12.41	0.00	2.061	8.83	0.91	3.1	96.9	0.0	-1.68	0.58	0.77	2.30	3.5	0.003	0.69	0.0	0.04	15.10	0.00	2.183	8.67	1.83	3.6	96.4	0.0	-0.50	0.46	0.55	0.76	2.69	9024	1144	6	0	2	0	0	logfile
✔	7WVW	32860	2023-09-28	2022-02-11	3.1	3.26	—	3.2	0.002	0.50	0.0	0.04	13.51	0.00	2.197	9.35	0.00	1.5	98.5	0.0	0.78	0.62	0.77	2.19	3.2	0.003	0.58	0.0	0.04	15.56	0.00	2.170	11.66	0.26	2.5	97.5	0.0	0.69	1.18	0.65	0.83	2.47	7169	924	5	0	0	0	0	logfile
✔	7WAZ	32390	2023-09-30	2021-12-15	3.4	3.85	—	3.4	0.002	0.59	0.0	0.04	18.60	0.00	2.160	11.49	5.53	4.0	95.8	0.2	0.74	0.67	0.58	0.88	3.4	0.003	0.68	0.0	0.04	19.75	0.00	2.084	17.55	0.60	5.8	94.1	0.1	-0.13	1.68	0.69	0.62	0.88	11034	952	4	157	0	0	0	logfile

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