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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8GK0 | 40177 | 2024-04-11 | 2023-03-16 | 3.44 | 3.95 | 3.64 | 3.8 | 0.004 | 0.71 | 0.0 | 0.17 | 15.01 | 0.00 | 2.205 | 13.82 | 0.77 | 1.9 | 98.1 | 0.0 | 0.87 | 0.75 | 0.85 | 1.66 | 3.8 | 0.003 | 0.77 | 0.0 | 0.07 | 15.75 | 0.00 | 2.064 | 12.32 | 3.07 | 2.1 | 97.9 | 0.0 | 1.17 | 1.17 | 0.72 | 0.84 | 1.41 | 23882 | 3089 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 8EJE | 28179 | 2024-04-07 | 2022-09-16 | 3.69 | 3.95 | 3.70 | 3.9 | 0.023 | 2.14 | 0.0 | 0.16 | 15.07 | 0.01 | 2.317 | 2.39 | 0.00 | 6.0 | 94.0 | 0.0 | -0.11 | 0.82 | 0.79 | 2.65 | 3.8 | 0.004 | 0.92 | 0.0 | 0.05 | 15.56 | 0.00 | 2.016 | 14.41 | 3.47 | 9.1 | 90.7 | 0.2 | -0.52 | 1.04 | 0.81 | 0.78 | 1.98 | 9426 | 1068 | 33 | 0 | 66 | 0 | 0 | logfile |
✘ | 7E1W | 30944 | 2024-04-17 | 2021-02-03 | 2.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 42695 | 5132 | 35 | 0 | 59 | 1 | 0 | logfile |
✔ | 7XoK | 33350 | 2024-04-05 | 2022-05-01 | 2.7 | 3.82 | 2.75 | 3.2 | 0.003 | 0.50 | 0.0 | 0.04 | 13.15 | 0.00 | 2.160 | 10.61 | 0.00 | 1.1 | 98.9 | 0.0 | 2.23 | 0.87 | 0.86 | 1.97 | 3.2 | 0.003 | 0.59 | 0.0 | 0.04 | 14.80 | 0.00 | 2.125 | 11.97 | 0.65 | 0.9 | 99.1 | 0.0 | 2.12 | 0.29 | 0.87 | 0.86 | 1.77 | 53970 | 7336 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 7AA5 | 11690 | 2024-04-10 | 2020-09-03 | 4.18 | 4.64 | — | 4.4 | 0.006 | 0.92 | 2.0 | 0.04 | 14.67 | 0.00 | 2.119 | 21.41 | 2.04 | 15.1 | 84.7 | 0.2 | -4.78 | 0.69 | 0.80 | — | 4.4 | 0.002 | 0.52 | 0.0 | 0.03 | 13.24 | 0.00 | 1.910 | 61.62 | 0.00 | 11.4 | 88.4 | 0.2 | 0.04 | 0.57 | 0.67 | 0.78 | — | 19705 | 2448 | 5 | 0 | 1 | 0 | 8 | logfile |
✔ | 7WJi | 32544 | 2024-04-16 | 2022-01-06 | 4.5 | 4.96 | 4.57 | 4.5 | 0.006 | 1.21 | 1.0 | 0.07 | 14.87 | 0.01 | 2.258 | 7.55 | 0.28 | 6.1 | 93.9 | 0.0 | -4.07 | 0.68 | 0.55 | — | 4.4 | 0.003 | 0.71 | 0.0 | 0.04 | 14.24 | 0.00 | 2.121 | 16.91 | 0.02 | 5.2 | 94.8 | 0.0 | -0.51 | 0.84 | 0.70 | 0.63 | — | 41173 | 5128 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GPJ | 34194 | 2024-04-10 | 2022-08-26 | 3.5 | 2.53 | 3.39 | 2.3 | 0.006 | 0.85 | 0.0 | 0.05 | 16.94 | 0.00 | 2.176 | 10.26 | 0.00 | 4.7 | 95.3 | 0.0 | -0.48 | 0.77 | 0.77 | 3.23 | 2.3 | 0.005 | 0.84 | 1.0 | 0.05 | 14.98 | 0.00 | 1.945 | 11.21 | 3.32 | 4.7 | 95.3 | 0.0 | -0.38 | 1.12 | 0.76 | 0.77 | 2.73 | 20259 | 2382 | 48 | 0 | 126 | 0 | 0 | logfile |
✔ | 7UGD | 26487 | 2024-04-05 | 2022-03-24 | 2.95 | 3.61 | 2.95 | 3.5 | 0.002 | 0.45 | 0.0 | 0.04 | 11.38 | 0.00 | 2.005 | 2.21 | 0.00 | 0.7 | 99.3 | 0.0 | 0.34 | 0.49 | 0.84 | 3.05 | 3.5 | 0.003 | 0.54 | 0.0 | 0.04 | 14.40 | 0.00 | 2.229 | 2.85 | 1.56 | 0.0 | 100.0 | 0.0 | 2.56 | 0.44 | 0.50 | 0.85 | 1.91 | 3079 | 415 | 1 | 0 | 3 | 0 | 0 | logfile |
✔ | 7R48 | 14287 | 2024-04-10 | 2022-02-08 | 2.3 | 2.31 | — | 2.3 | 0.008 | 0.85 | 0.0 | 0.85 | 18.87 | 0.01 | 1.924 | 2.56 | 1.24 | 2.1 | 97.9 | 0.0 | 0.80 | 0.74 | 0.91 | 6.11 | 2.3 | 0.007 | 1.31 | 0.0 | 0.26 | 16.78 | 0.00 | 1.259 | 4.17 | 0.89 | 1.7 | 98.3 | 0.0 | 1.80 | 0.25 | 0.75 | 0.92 | 5.58 | 69247 | 8118 | 115 | 0 | 55 | 2124 | 0 | logfile |
✔ | 7R4D | 14297 | 2024-04-09 | 2022-02-08 | 2.3 | 2.32 | — | 2.2 | 0.008 | 0.84 | 0.0 | 0.85 | 16.84 | 0.01 | 1.863 | 3.37 | 0.03 | 2.1 | 97.9 | 0.0 | 0.61 | 0.76 | 0.89 | 6.23 | 2.3 | 0.007 | 1.34 | 2.0 | 0.26 | 16.26 | 0.00 | 1.981 | 4.29 | 0.63 | 1.7 | 98.3 | 0.0 | 1.79 | 1.11 | 0.74 | 0.91 | 5.61 | 68004 | 8056 | 115 | 0 | 49 | 1607 | 0 | logfile |
✔ | 8iHP | 35451 | 2024-04-14 | 2023-02-23 | 3.0 | 3.11 | 3.02 | 3.1 | 0.006 | 0.69 | 0.0 | 0.05 | 13.20 | 0.01 | 2.197 | 7.55 | 0.00 | 7.2 | 92.8 | 0.0 | -1.76 | 0.52 | 0.83 | 3.60 | 3.1 | 0.003 | 0.60 | 0.0 | 0.04 | 15.49 | 0.00 | 2.153 | 6.98 | 2.62 | 5.2 | 94.8 | 0.0 | -1.11 | 1.54 | 0.53 | 0.87 | 3.10 | 32337 | 4181 | 26 | 0 | 15 | 0 | 0 | logfile |
✔ | 8CL2 | 16710 | 2024-04-10 | 2023-02-16 | 3.45 | 3.69 | 3.44 | 3.6 | 0.004 | 0.82 | 0.0 | 0.05 | 12.07 | 0.01 | 2.192 | 3.59 | 0.00 | 0.0 | 100.0 | 0.0 | -0.83 | 0.54 | 0.79 | 2.49 | 3.6 | 0.003 | 0.64 | 0.0 | 0.04 | 17.16 | 0.00 | 2.192 | 9.41 | 1.97 | 2.1 | 97.9 | 0.0 | 1.49 | 2.42 | 0.56 | 0.83 | 1.20 | 13335 | 1725 | 15 | 0 | 0 | 0 | 0 | logfile |
✘ | 5X1G | 6701 | 2024-04-05 | 2017-01-25 | 4.5 | 7.89 | — | 37.0 | 0.008 | 1.42 | 0.0 | 0.05 | 10.05 | 0.01 | 2.345 | 27.78 | 0.00 | 6.9 | 93.1 | 0.0 | -2.75 | 0.00 | 0.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 155 | 31 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7W3J | 32282 | 2024-04-06 | 2021-11-25 | 3.5 | 4.46 | — | 3.0 | 0.005 | 0.84 | 0.0 | 0.05 | 14.85 | 0.01 | 1.739 | 6.46 | 0.55 | 6.9 | 93.0 | 0.1 | -1.22 | 0.83 | 0.81 | 1.76 | 3.0 | 0.002 | 0.62 | 0.0 | 0.04 | 15.92 | 0.00 | 2.073 | 11.52 | 1.02 | 6.4 | 93.5 | 0.0 | 0.34 | 0.79 | 0.87 | 0.85 | 1.49 | 110559 | 14071 | 55 | 0 | 7 | 0 | 0 | logfile |
✔ | 7W3i | 32281 | 2024-04-06 | 2021-11-25 | 3.5 | 4.43 | — | 2.9 | 0.005 | 0.82 | 0.0 | 0.05 | 14.74 | 0.01 | 1.702 | 5.71 | 0.26 | 6.7 | 93.2 | 0.1 | -1.17 | 0.79 | 0.72 | 1.86 | 2.9 | 0.003 | 0.63 | 0.0 | 0.04 | 16.26 | 0.00 | 1.973 | 12.84 | 1.78 | 6.7 | 93.3 | 0.0 | 0.02 | 1.07 | 0.82 | 0.77 | 1.55 | 110481 | 14054 | 55 | 0 | 7 | 0 | 0 | logfile |
✘ | 8G4X | 29733 | 2024-04-14 | 2023-02-10 | 2.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31102 | 1895 | 19 | 0 | 38 | 0 | 15204 | logfile |
✔ | 7R4C | 14292 | 2024-04-09 | 2022-02-08 | 2.3 | 2.35 | — | 2.3 | 0.007 | 0.81 | 0.0 | 0.85 | 17.01 | 0.01 | 1.908 | 3.18 | 0.01 | 2.2 | 97.7 | 0.0 | 0.69 | 0.74 | 0.91 | 6.21 | 2.3 | 0.007 | 1.31 | 0.0 | 0.26 | 16.43 | 0.00 | 1.818 | 3.83 | 0.75 | 1.6 | 98.4 | 0.0 | 1.75 | 0.79 | 0.73 | 0.92 | 5.53 | 68045 | 8069 | 115 | 0 | 51 | 1525 | 0 | logfile |
✔ | 7QSo | 14140 | 2024-04-08 | 2022-01-13 | 3.02 | 2.98 | 3.05 | 2.9 | 0.007 | 0.83 | 0.0 | 0.86 | 15.29 | 0.00 | 1.873 | 4.16 | 0.01 | 3.7 | 96.2 | 0.0 | -0.53 | 0.76 | 0.86 | 4.06 | 2.8 | 0.007 | 1.33 | 0.0 | 0.26 | 16.10 | 0.00 | 2.015 | 6.61 | 1.31 | 2.4 | 97.6 | 0.0 | 1.26 | 0.93 | 0.77 | 0.87 | 3.16 | 66112 | 8018 | 68 | 0 | 46 | 0 | 0 | logfile |
✔ | 7W3A | 32275 | 2024-04-06 | 2021-11-25 | 3.5 | 4.33 | — | 3.0 | 0.004 | 0.81 | 0.0 | 0.05 | 14.64 | 0.01 | 1.801 | 5.71 | 0.38 | 6.7 | 93.2 | 0.1 | -1.11 | 0.83 | 0.80 | 1.73 | 3.0 | 0.005 | 0.66 | 0.0 | 0.04 | 15.84 | 0.00 | 1.968 | 12.83 | 1.27 | 7.4 | 92.5 | 0.1 | 0.22 | 0.40 | 0.85 | 0.84 | 1.54 | 110889 | 14090 | 56 | 0 | 41 | 0 | 0 | logfile |
✔ | 7XoJ | 33349 | 2024-04-05 | 2022-05-01 | 2.8 | 3.84 | 2.82 | 3.2 | 0.003 | 0.48 | 0.0 | 0.04 | 13.28 | 0.00 | 2.189 | 10.04 | 0.00 | 0.9 | 99.1 | 0.0 | 2.28 | 0.88 | 0.87 | 2.08 | 3.2 | 0.003 | 0.56 | 0.0 | 0.04 | 14.86 | 0.00 | 2.115 | 11.83 | 0.57 | 1.0 | 99.0 | 0.0 | 2.16 | 0.27 | 0.88 | 0.88 | 1.98 | 53970 | 7336 | 14 | 0 | 0 | 0 | 0 | logfile |