Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Y1L	33565	2023-11-14	2022-06-08	3.73	3.98	3.74	3.9	0.005	0.59	0.0	0.04	11.09	0.00	2.202	8.44	1.03	1.8	98.2	0.0	2.57	0.64	0.85	1.27	3.9	0.003	0.60	0.0	0.04	14.03	0.00	2.016	9.74	0.11	1.3	98.7	0.0	2.50	0.48	0.64	0.85	0.87	8955	1189	1	0	5	0	0	logfile
✘	7ASD	11892	2023-11-20	2020-10-27	3.5	3.68	3.48	3.5	0.003	0.68	0.0	0.06	8.97	0.00	2.153	5.28	2.16	2.2	97.8	0.0	0.30	0.81	0.83	2.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30296	3664	48	0	72	0	0	logfile
✔	8iPS	35642	2023-11-14	2023-03-14	3.6	3.89	3.62	3.8	0.005	0.70	0.0	0.04	18.31	0.01	2.221	8.07	0.21	7.6	92.4	0.0	0.29	0.75	0.82	1.33	3.8	0.003	0.61	0.0	0.04	18.75	0.00	2.201	6.05	0.32	6.8	93.1	0.1	0.80	1.42	0.73	0.82	1.10	9071	1161	3	0	1	0	0	logfile
✘	8i5X	35197	2023-11-15	2023-01-26	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13590	1565	8	0	35	0	0	logfile
✔	8DE4	27384	2023-11-13	2022-06-19	2.9	3.20	2.90	3.3	0.009	0.79	0.0	0.23	17.18	0.01	2.096	10.13	4.35	3.0	97.0	0.0	0.28	0.50	0.66	1.62	3.3	0.003	0.57	0.0	0.04	17.16	0.00	2.190	11.35	6.68	5.9	94.1	0.0	-0.34	0.88	0.52	0.69	1.89	6188	767	5	0	9	0	0	logfile
✔	8oR4	17117	2023-11-16	2023-04-13	3.8	2.76	3.68	2.2	0.003	0.59	1.0	0.04	16.20	0.00	1.930	10.19	0.31	6.0	94.0	0.0	0.05	0.70	0.66	0.53	2.2	0.003	0.77	0.0	0.04	17.22	0.00	2.145	10.05	0.56	5.8	94.2	0.0	-0.28	0.54	0.71	0.67	0.47	15036	1988	7	0	0	0	0	logfile
✔	8ESV	28580	2023-11-14	2022-10-14	3.3	2.37	3.29	2.0	0.006	0.71	0.0	0.04	17.57	0.01	1.929	12.92	0.00	6.7	93.1	0.2	-0.67	0.76	0.76	2.53	2.0	0.005	0.71	0.0	0.05	17.76	0.00	1.937	15.12	0.13	8.0	91.8	0.2	-0.60	0.29	0.77	0.77	2.67	7222	933	8	0	13	0	0	logfile
✔	7V4D	31708	2023-11-13	2021-08-12	3.5	3.38	—	4.0	0.003	0.54	0.0	0.05	11.89	0.00	2.234	14.44	0.00	7.1	92.9	0.0	-5.68	0.41	0.80	4.67	4.1	0.003	0.67	0.0	0.05	13.01	0.00	2.208	8.66	0.00	9.2	90.8	0.0	-3.61	1.19	0.42	0.80	4.19	2376	348	6	0	0	0	0	logfile
✔	8DMX	27548	2023-11-15	2022-07-08	3.37	3.66	3.43	3.6	0.003	0.59	0.0	0.04	13.99	0.00	2.105	6.01	0.00	2.3	97.7	0.0	0.17	0.55	0.79	2.06	3.6	0.002	0.54	0.0	0.04	15.82	0.00	2.014	3.56	0.16	2.2	97.8	0.0	-0.45	0.50	0.69	0.91	2.30	11748	1488	8	0	8	0	0	logfile
✔	8A1V	15090	2023-11-20	2022-06-02	2.73	2.26	2.68	2.5	0.003	0.54	0.0	0.04	14.38	0.00	1.991	3.08	0.78	1.7	98.3	0.0	1.02	0.61	0.75	3.70	2.2	0.003	0.55	0.0	0.04	16.30	0.00	1.916	7.36	1.68	2.8	97.2	0.0	0.19	0.74	0.61	0.80	3.46	29906	1892	16	0	14	386	14644	logfile
✘	8A1W	15091	2023-11-20	2022-06-02	2.56	2.20	2.53	2.4	0.004	0.56	0.0	0.04	15.09	0.00	2.014	2.96	0.32	1.1	98.9	0.0	1.65	0.60	0.72	3.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30172	1908	16	0	16	289	14776	logfile
✔	7YDP	33755	2023-11-14	2022-07-04	3.1	2.36	3.18	2.1	0.005	0.73	0.0	0.05	12.57	0.00	2.123	11.85	0.00	5.2	94.8	0.0	-1.21	0.68	0.65	1.63	2.1	0.003	0.65	0.0	0.04	14.59	0.00	2.168	10.22	0.23	4.9	95.1	0.0	0.01	0.40	0.69	0.66	1.23	8028	1022	5	0	0	0	0	logfile
✔	6QJQ	4566	2023-11-13	2019-01-24	3.7	3.99	2.14	4.1	0.021	1.17	0.0	0.11	13.36	0.01	2.499	5.58	0.00	4.0	94.0	2.0	-4.41	0.39	0.75	2.60	4.1	0.005	0.77	0.0	0.05	14.41	0.00	2.276	11.56	0.00	6.0	94.0	0.0	-2.81	1.25	0.37	0.75	2.23	1218	162	6	0	0	0	0	logfile
✔	7RoE	24593	2023-11-19	2021-07-30	3.7	3.80	—	3.5	0.006	0.69	0.0	0.04	12.63	0.01	2.266	11.99	4.00	6.7	93.3	0.0	1.70	0.67	0.86	1.96	3.5	0.004	0.73	0.0	0.04	14.52	0.01	2.191	10.10	0.58	5.7	94.2	0.1	3.40	0.52	0.67	0.85	1.77	137200	18800	200	0	0	0	0	logfile
✔	7YMH	33928	2023-11-13	2022-07-28	3.52	3.74	3.42	3.7	0.004	0.78	0.0	0.05	13.78	0.01	2.324	3.55	0.00	4.8	95.2	0.0	-4.54	0.66	0.79	2.80	3.7	0.003	0.63	0.0	0.04	14.97	0.00	2.255	7.63	0.54	3.2	96.8	0.0	-0.41	0.52	0.66	0.79	1.67	3948	542	4	0	1	0	0	logfile
✔	7U16	26279	2023-11-13	2022-02-19	2.7	3.30	—	3.5	0.004	0.62	0.0	0.06	12.93	0.00	2.310	8.58	0.00	6.8	93.2	0.0	-2.67	0.29	0.68	2.62	3.5	0.003	0.57	0.0	0.06	15.61	0.00	2.200	6.25	1.84	6.5	93.5	0.0	-2.62	1.74	0.36	0.80	5.02	3456	405	6	0	12	0	0	logfile
✔	8SoR	40669	2023-11-21	2023-04-29	3.96	3.57	—	3.5	0.004	0.61	1.0	0.04	14.39	0.00	1.903	7.61	0.11	4.7	95.2	0.1	-0.05	0.75	0.73	2.16	3.5	0.003	0.55	0.0	0.04	15.00	0.00	1.882	8.07	0.11	5.7	94.3	0.1	0.47	0.31	0.75	0.73	2.07	32094	1986	4	0	1	0	16046	logfile
✔	8P83	17540	2023-11-21	2023-05-31	3.87	4.82	3.91	3.8	0.003	0.66	3.0	0.06	4.70	0.00	2.470	0.84	0.00	2.0	97.9	0.1	0.35	0.81	0.58	—	3.8	0.003	0.79	0.0	0.04	5.70	0.01	2.230	9.10	0.00	7.0	93.0	0.0	-1.97	2.83	0.85	0.58	—	35656	7036	4	0	0	0	0	logfile
✔	8J19	35914	2023-11-14	2023-04-12	3.23	3.65	3.37	3.6	0.005	0.63	1.0	0.04	15.96	0.00	2.220	5.65	0.74	1.9	98.1	0.0	0.90	0.65	0.84	3.13	3.6	0.002	0.58	0.0	0.04	16.14	0.00	2.188	7.25	0.11	2.1	97.9	0.0	0.76	0.94	0.60	0.83	2.93	8801	1129	6	0	1	0	0	logfile
✔	7PMi	13535	2023-11-15	2021-09-02	3.3	4.20	3.27	3.2	0.014	1.17	2.0	0.07	15.30	0.01	1.306	5.04	0.09	0.2	99.8	0.0	-1.50	0.92	0.84	2.97	3.2	0.003	0.69	0.0	0.04	15.66	0.00	2.015	8.05	0.18	1.8	98.2	0.0	1.27	0.66	0.94	0.88	2.61	10189	1264	6	0	6	0	0	logfile

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