Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7CKW	30392	2023-04-23	2020-07-20	3.22	3.34	—	3.3	0.002	0.48	0.0	0.04	13.74	0.00	2.178	15.84	1.74	3.0	97.0	0.0	-3.30	0.58	0.71	1.74	3.3	0.003	0.67	0.0	0.04	16.11	0.00	2.036	20.45	0.70	4.6	95.4	0.0	-0.85	0.67	0.62	0.78	1.82	8103	1035	5	0	2	0	0	logfile
✔	8F7Q	28907	2023-04-22	2022-11-20	3.22	3.34	3.24	3.4	0.004	0.87	0.0	0.07	8.03	0.01	2.262	3.31	0.00	1.4	98.6	0.0	0.89	0.64	0.78	2.57	3.3	0.003	0.53	0.0	0.04	12.74	0.00	2.135	5.66	0.23	1.8	98.2	0.0	2.02	0.66	0.64	0.83	2.76	11994	1484	11	0	10	0	0	logfile
✔	7AZP	11950	2023-04-28	2020-11-17	3.5	3.84	3.46	3.6	0.004	0.62	0.0	0.04	13.41	0.00	2.210	10.65	0.71	3.3	96.7	0.0	-2.29	0.89	0.86	0.66	3.6	0.007	0.75	0.0	0.05	14.85	0.00	2.172	14.54	0.54	4.3	95.7	0.0	0.48	1.22	0.89	0.86	1.01	27391	3675	7	0	0	0	0	logfile
✔	7CKX	30393	2023-04-23	2020-07-20	3.54	3.65	—	3.6	0.003	0.50	0.0	0.04	13.48	0.00	2.160	12.77	2.09	3.2	96.8	0.0	-3.07	0.59	0.71	1.45	3.6	0.004	0.78	0.0	0.05	16.61	0.00	2.140	22.36	1.39	4.8	95.2	0.0	-1.32	0.76	0.61	0.76	1.72	8112	1035	5	0	2	0	0	logfile
✘	7KUE	23036	2023-04-20	2020-11-24	3.5	2.53	3.43	2.0	0.010	1.62	3.0	0.11	15.46	0.01	2.205	5.73	0.78	8.4	91.6	0.0	-4.55	0.71	0.69	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4726	577	4	0	2	0	0	logfile
✔	7U2K	26313	2023-04-20	2022-02-24	3.3	3.77	—	3.5	0.010	0.76	0.0	0.05	14.70	0.00	2.198	6.93	0.43	6.0	94.0	0.0	-1.90	0.83	0.89	3.29	3.6	0.003	0.59	0.0	0.04	15.58	0.00	2.189	6.17	0.14	3.8	96.2	0.0	0.52	0.48	0.78	0.85	1.59	6755	889	5	0	1	0	0	logfile
✔	6V4J	21041	2023-04-28	2019-11-27	2.97	2.66	—	2.6	0.010	1.79	8.0	0.09	13.20	0.01	0.244	16.47	5.36	4.0	95.7	0.3	-0.54	0.47	0.48	1.90	2.6	0.003	0.81	0.0	0.04	16.33	0.00	2.100	13.99	3.48	4.6	95.4	0.0	-1.07	1.53	0.48	0.50	1.34	20637	2697	8	0	0	0	0	logfile
✔	7SFK	25091	2023-04-20	2021-10-04	2.74	2.96	—	3.1	0.008	0.97	0.0	0.04	18.02	0.01	2.265	3.61	0.43	1.8	98.2	0.0	2.37	0.74	0.84	3.90	3.0	0.003	0.49	0.0	0.04	17.19	0.01	2.160	5.04	0.43	2.4	97.6	0.0	1.08	0.34	0.67	0.83	4.06	7419	852	9	0	24	57	0	logfile
✔	7VTQ	32120	2023-04-28	2021-10-30	3.55	4.59	—	3.2	0.004	0.68	0.0	0.04	15.12	0.00	2.136	14.14	0.05	5.6	94.4	0.0	-0.05	0.74	0.61	0.73	3.3	0.002	0.70	0.0	0.04	15.85	0.00	2.112	13.74	0.12	3.3	96.7	0.0	0.45	0.53	0.87	0.80	0.58	76572	9468	24	0	24	0	0	logfile
✔	7WWB	32865	2023-04-20	2022-02-12	3.86	4.08	—	4.1	0.008	0.97	0.0	0.07	9.51	0.01	2.511	0.45	0.00	2.5	97.5	0.0	0.18	0.48	0.76	2.65	4.1	0.004	0.75	0.0	0.04	15.89	0.01	2.208	9.75	1.01	4.8	94.9	0.3	-0.24	1.66	0.51	0.80	2.12	5428	666	4	0	4	0	0	logfile
✔	8B1R	15803	2023-04-26	2022-09-12	3.2	3.47	3.13	3.3	0.004	0.63	0.0	0.05	9.18	0.00	2.210	7.58	0.34	0.7	99.3	0.0	0.06	0.84	0.87	2.66	3.3	0.004	0.55	0.0	0.04	13.23	0.00	2.221	5.19	0.17	1.6	98.4	0.0	2.27	0.64	0.86	0.90	2.75	21953	2746	6	0	1	0	0	logfile
✔	6oF2	20040	2023-04-22	2019-03-28	2.9	2.77	—	3.7	0.006	1.00	0.0	0.05	14.63	0.01	2.062	8.80	1.02	17.7	80.2	2.2	-4.30	0.69	0.63	0.25	3.4	0.004	0.81	0.0	0.04	17.12	0.01	1.964	10.21	2.71	8.0	92.0	0.0	0.24	1.60	0.79	0.83	1.80	11062	1422	6	0	4	0	0	logfile
✔	7BZW	30261	2023-04-21	2020-04-28	4.6	7.66	4.73	6.0	0.003	0.82	0.0	0.05	15.82	0.01	2.176	28.88	0.00	19.4	80.6	0.0	-5.59	0.85	0.67	—	6.5	0.003	0.82	0.0	0.05	14.68	0.01	1.922	20.13	0.00	19.3	80.7	0.0	-2.79	1.80	0.93	0.86	—	9756	1212	12	0	0	0	0	logfile
✔	6ZoX	11329	2023-04-27	2020-07-08	3.0	3.30	—	3.1	0.011	1.61	18.0	0.09	12.11	0.01	2.015	4.01	0.90	3.6	96.2	0.2	0.27	0.81	0.81	3.15	3.1	0.003	0.64	0.0	0.05	14.86	0.00	2.088	8.92	2.33	3.2	96.8	0.0	0.23	0.55	0.80	0.83	2.29	24696	3051	21	0	63	0	0	logfile
✔	6GYN	0093	2023-04-24	2018-06-30	3.4	3.66	3.52	3.6	0.008	0.85	0.0	0.05	9.32	0.01	2.273	3.08	0.00	4.7	95.3	0.0	-2.56	0.66	0.83	3.51	3.6	0.002	0.52	0.0	0.04	13.28	0.00	2.227	6.55	0.23	2.7	97.3	0.0	2.35	0.50	0.64	0.83	2.23	16932	1980	8	0	36	0	0	logfile
✔	7ANZ	11835	2023-04-24	2020-10-13	3.6	2.50	—	3.7	0.003	0.78	0.0	0.05	15.89	0.00	2.277	4.54	0.31	6.5	93.4	0.2	-5.88	0.77	0.74	1.50	3.7	0.003	0.70	0.0	0.04	17.57	0.00	2.104	10.67	0.52	6.5	93.5	0.0	-0.61	0.66	0.78	0.76	1.10	16751	2041	4	0	0	0	0	logfile
✘	7N62	24192	2023-04-20	2021-06-07	4.0	3.42	—	3.9	0.006	0.82	0.0	0.05	13.98	0.01	2.203	21.20	0.00	14.9	85.1	0.0	-2.74	0.73	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5613	712	4	0	5	0	0	logfile
✔	6Xi8	22191	2023-04-20	2020-06-19	3.64	2.63	3.78	2.0	0.010	1.69	4.0	0.11	15.20	0.01	1.333	6.59	0.77	9.0	91.0	0.0	-4.62	0.66	0.54	0.71	1.9	0.004	0.90	0.0	0.05	17.20	0.01	2.175	17.94	0.97	9.0	91.0	0.0	-2.43	1.23	0.68	0.64	0.82	5022	636	4	0	2	0	0	logfile
✔	7oT9	13057	2023-04-20	2021-06-09	2.8	3.63	2.69	3.3	0.005	0.67	0.0	0.04	14.51	0.00	2.138	10.05	0.00	5.6	94.4	0.0	2.47	0.60	0.81	2.16	3.3	0.003	0.63	0.0	0.04	16.99	0.00	2.148	8.28	2.29	7.1	92.9	0.0	3.54	1.18	0.58	0.80	2.02	8410	1105	5	0	0	0	0	logfile
✔	6VN7	21249	2023-04-20	2020-01-29	3.2	3.53	—	3.7	0.004	0.90	0.0	0.07	8.54	0.01	2.254	4.22	0.00	2.8	97.2	0.0	-2.38	0.66	0.78	2.53	3.7	0.005	0.65	0.0	0.04	14.31	0.00	2.106	8.15	0.44	2.3	97.7	0.0	0.87	0.75	0.56	0.74	2.05	8620	1052	7	0	10	0	0	logfile

• ← previous
• Page 2 of 372
• next →