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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7N58 | 24182 | 2024-03-14 | 2021-06-05 | 3.4 | 3.79 | 3.58 | 3.8 | 0.004 | 0.84 | 0.0 | 0.05 | 13.09 | 0.01 | 2.146 | 14.80 | 0.00 | 2.8 | 97.2 | 0.0 | -0.83 | 0.61 | 0.67 | 1.16 | 3.8 | 0.003 | 0.62 | 0.0 | 0.04 | 16.08 | 0.00 | 2.197 | 9.58 | 1.59 | 3.8 | 96.2 | 0.0 | 1.02 | 0.54 | 0.64 | 0.71 | 0.97 | 9326 | 1200 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7RWA | 24712 | 2024-03-17 | 2021-08-19 | 4.7 | 5.66 | 4.89 | 4.6 | 0.003 | 0.89 | 0.0 | 0.05 | 5.84 | 0.00 | 1.914 | 2.65 | 0.00 | 5.8 | 93.7 | 0.5 | -0.12 | 0.84 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16158 | 3244 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oJ8 | 12939 | 2024-03-14 | 2021-05-14 | 3.4 | 3.92 | 3.48 | 3.8 | 0.010 | 1.14 | 0.0 | 0.06 | 13.09 | 0.00 | 2.114 | 6.59 | 0.41 | 5.3 | 94.2 | 0.5 | -1.11 | 0.63 | 0.79 | 1.90 | 3.8 | 0.003 | 0.66 | 0.0 | 0.04 | 15.01 | 0.00 | 2.156 | 10.32 | 3.46 | 4.6 | 95.4 | 0.0 | 0.87 | 2.83 | 0.63 | 0.82 | 1.45 | 9148 | 1150 | 4 | 0 | 7 | 0 | 0 | logfile |
✔ | 6DiD | 7896 | 2024-03-24 | 2018-05-23 | 4.71 | 5.51 | — | 4.7 | 0.014 | 1.61 | 0.0 | 0.10 | 15.54 | 0.01 | 0.718 | 10.44 | 1.83 | 2.4 | 97.6 | 0.0 | 1.29 | 0.72 | 0.51 | — | 4.7 | 0.004 | 0.69 | 0.0 | 0.04 | 11.02 | 0.00 | 1.792 | 51.13 | 0.53 | 7.2 | 92.8 | 0.0 | 0.29 | 0.97 | 0.81 | 0.67 | — | 34674 | 3009 | 54 | 0 | 147 | 0 | 9465 | logfile |
✔ | 7LN3 | 23447 | 2024-03-22 | 2021-02-06 | 3.45 | 4.37 | 3.48 | 3.7 | 0.005 | 0.67 | 0.0 | 0.04 | 14.41 | 0.01 | 1.950 | 10.73 | 0.00 | 1.8 | 98.2 | 0.1 | 1.48 | 0.74 | 0.61 | 1.16 | 3.7 | 0.003 | 0.60 | 0.0 | 0.04 | 14.81 | 0.00 | 1.899 | 12.61 | 0.75 | 1.7 | 98.2 | 0.1 | 2.00 | 0.59 | 0.87 | 0.80 | 0.99 | 34920 | 4409 | 13 | 0 | 41 | 0 | 0 | logfile |
✔ | 7B9K | 12104 | 2024-03-11 | 2020-12-14 | 3.16 | 3.23 | 3.17 | 3.3 | 0.005 | 0.66 | 0.0 | 0.05 | 14.96 | 0.01 | 2.168 | 13.51 | 1.11 | 5.0 | 95.0 | 0.0 | -3.10 | 0.73 | 0.83 | 3.07 | 3.3 | 0.003 | 0.53 | 0.0 | 0.04 | 14.73 | 0.00 | 2.210 | 10.86 | 1.37 | 3.7 | 96.3 | 0.0 | -0.35 | 0.42 | 0.74 | 0.85 | 2.52 | 59136 | 7680 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SK7 | 25175 | 2024-03-16 | 2021-10-19 | 3.3 | 3.48 | — | 3.4 | 0.004 | 0.57 | 0.0 | 0.05 | 14.16 | 0.00 | 2.002 | 4.59 | 0.00 | 3.6 | 96.4 | 0.0 | -0.04 | 0.68 | 0.80 | 3.12 | 3.4 | 0.003 | 0.53 | 0.0 | 0.04 | 15.51 | 0.00 | 2.127 | 5.63 | 1.59 | 3.5 | 96.5 | 0.0 | 0.12 | 0.38 | 0.68 | 0.81 | 2.88 | 13455 | 854 | 6 | 0 | 2 | 0 | 6650 | logfile |
✔ | 8G46 | 29714 | 2024-03-11 | 2023-02-08 | 2.2 | 2.34 | 2.28 | 2.4 | 0.009 | 0.98 | 0.0 | 0.06 | 15.97 | 0.01 | 2.207 | 6.43 | 1.70 | 3.0 | 97.0 | 0.0 | -0.25 | 0.54 | 0.79 | 4.41 | 2.4 | 0.002 | 0.62 | 0.0 | 0.04 | 16.34 | 0.00 | 2.226 | 5.02 | 0.96 | 2.4 | 97.6 | 0.0 | 0.24 | 0.22 | 0.62 | 0.83 | 4.27 | 8603 | 1064 | 7 | 0 | 2 | 110 | 0 | logfile |
✔ | 7LYP | 23598 | 2024-03-19 | 2021-03-07 | 4.05 | 4.38 | — | 4.1 | 0.013 | 1.73 | 0.0 | 0.09 | 12.97 | 0.01 | 2.509 | 0.28 | 0.71 | 6.7 | 92.7 | 0.6 | -1.22 | 0.82 | 0.81 | — | 4.1 | 0.004 | 0.65 | 0.0 | 0.04 | 12.58 | 0.00 | 2.037 | 10.76 | 0.00 | 5.5 | 94.5 | 0.0 | 0.00 | 0.67 | 0.83 | 0.82 | — | 23504 | 2985 | 6 | 0 | 28 | 0 | 0 | logfile |
✘ | 7RH5 | 24455 | 2024-03-19 | 2021-07-16 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 93342 | 6072 | 44 | 0 | 66 | 0 | 44380 | logfile |
✔ | 7SQ0 | 25373 | 2024-03-14 | 2021-11-04 | 3.7 | 3.39 | 3.64 | 3.6 | 0.004 | 0.68 | 0.0 | 0.05 | 13.62 | 0.00 | 2.215 | 4.77 | 0.00 | 2.6 | 97.4 | 0.0 | -2.91 | 0.72 | 0.83 | 3.99 | 3.6 | 0.003 | 0.58 | 0.0 | 0.05 | 14.29 | 0.00 | 1.996 | 6.35 | 0.20 | 4.0 | 96.0 | 0.0 | 1.53 | 1.89 | 0.72 | 0.83 | 3.53 | 9160 | 593 | 5 | 0 | 42 | 0 | 4286 | logfile |
✔ | 7oCK | 12809 | 2024-03-20 | 2021-04-27 | 3.6 | 5.02 | — | 8.3 | 0.008 | 0.86 | 0.0 | 0.05 | 14.98 | 0.01 | 1.988 | 36.10 | 0.20 | 7.7 | 92.1 | 0.2 | -2.93 | 0.80 | 0.41 | -0.16 | 5.6 | 0.006 | 1.01 | 1.0 | 0.05 | 17.05 | 0.01 | 1.953 | 42.81 | 3.20 | 6.6 | 93.3 | 0.1 | -1.45 | 1.41 | 0.87 | 0.65 | -0.05 | 28276 | 3666 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LYQ | 23599 | 2024-03-19 | 2021-03-07 | 3.34 | 3.59 | — | 3.6 | 0.013 | 1.74 | 1.0 | 0.10 | 12.67 | 0.01 | 2.521 | 0.30 | 0.43 | 5.2 | 94.3 | 0.4 | -0.83 | 0.77 | 0.83 | 3.22 | 3.5 | 0.004 | 0.60 | 0.0 | 0.04 | 14.07 | 0.00 | 2.201 | 4.78 | 2.08 | 3.3 | 96.7 | 0.0 | 0.51 | 1.24 | 0.79 | 0.86 | 2.61 | 23641 | 2985 | 6 | 0 | 38 | 0 | 0 | logfile |
✔ | 6RiU | 4898 | 2024-03-10 | 2019-04-25 | 3.9 | 6.21 | 2.04 | 7.0 | 0.008 | 1.19 | 0.0 | 0.09 | 15.19 | 0.01 | 2.182 | 5.20 | 0.00 | 8.4 | 91.6 | 0.0 | -5.77 | 0.59 | 0.69 | 0.56 | 7.1 | 0.002 | 0.67 | 0.0 | 0.03 | 16.04 | 0.00 | 2.071 | 11.09 | 1.97 | 3.4 | 96.6 | 0.0 | -0.01 | 1.43 | 0.60 | 0.75 | 0.76 | 2882 | 182 | 2 | 0 | 0 | 0 | 1430 | logfile |
✘ | 7TLB | 25986 | 2024-03-19 | 2022-01-18 | 3.06 | 3.26 | — | 3.2 | 0.012 | 1.74 | 1.0 | 0.09 | 13.14 | 0.01 | 2.531 | 0.11 | 0.82 | 5.3 | 94.7 | 0.1 | -1.00 | 0.54 | 0.56 | 2.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22806 | 2916 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QFQ | 13947 | 2024-03-15 | 2021-12-06 | 3.6 | 3.83 | 3.58 | 4.0 | 0.002 | 0.54 | 0.0 | 0.04 | 12.93 | 0.00 | 2.177 | 8.31 | 0.00 | 5.4 | 94.6 | 0.0 | -0.70 | 0.65 | 0.70 | 1.50 | 4.0 | 0.002 | 0.50 | 0.0 | 0.04 | 14.91 | 0.00 | 2.191 | 7.22 | 2.02 | 5.0 | 95.0 | 0.0 | -0.54 | 0.36 | 0.66 | 0.71 | 1.58 | 10659 | 1291 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LWL | 23549 | 2024-03-19 | 2021-03-01 | 2.84 | 3.04 | — | 3.0 | 0.013 | 1.79 | 2.0 | 0.10 | 12.81 | 0.01 | 2.505 | 0.04 | 0.53 | 4.2 | 95.6 | 0.2 | -0.78 | 0.72 | 0.83 | 4.07 | 3.0 | 0.003 | 0.61 | 0.0 | 0.05 | 14.73 | 0.00 | 2.158 | 5.22 | 1.22 | 3.0 | 97.0 | 0.0 | 0.55 | 0.61 | 0.73 | 0.84 | 3.27 | 23847 | 3003 | 6 | 0 | 30 | 0 | 0 | logfile |
✔ | 7KW7 | 23050 | 2024-03-24 | 2020-11-30 | 3.57 | 4.37 | 3.64 | 3.7 | 0.021 | 1.73 | 0.0 | 0.10 | 11.04 | 0.01 | 1.517 | 0.96 | 0.00 | 1.3 | 98.7 | 0.0 | 0.61 | 0.86 | 0.74 | 1.04 | 3.7 | 0.006 | 0.69 | 0.0 | 0.04 | 13.88 | 0.00 | 1.663 | 16.33 | 1.04 | 5.3 | 94.6 | 0.0 | -0.23 | 1.73 | 0.88 | 0.77 | 1.18 | 43780 | 2727 | 8 | 0 | 6 | 0 | 21928 | logfile |
✔ | 7ZLK | 14783 | 2024-03-19 | 2022-04-15 | 3.99 | 4.35 | 4.04 | 4.2 | 0.021 | 1.85 | 0.0 | 0.13 | 14.46 | 0.01 | 2.348 | 0.97 | 0.08 | 2.9 | 97.1 | 0.0 | 0.34 | 0.76 | 0.76 | 1.82 | 4.2 | 0.004 | 0.77 | 0.0 | 0.05 | 14.89 | 0.00 | 2.134 | 13.91 | 3.13 | 5.9 | 94.0 | 0.1 | -0.36 | 1.52 | 0.78 | 0.81 | 1.42 | 23518 | 2836 | 35 | 0 | 98 | 0 | 0 | logfile |
✔ | 6X2B | 22000 | 2024-03-18 | 2020-05-20 | 3.6 | 4.27 | 3.73 | 3.9 | 0.012 | 1.74 | 2.0 | 0.09 | 13.17 | 0.01 | 2.530 | 0.34 | 2.08 | 6.7 | 92.9 | 0.4 | -1.71 | 0.77 | 0.76 | 2.50 | 3.9 | 0.002 | 0.59 | 0.0 | 0.04 | 13.34 | 0.00 | 2.176 | 6.67 | 1.34 | 4.0 | 96.0 | 0.0 | 0.36 | 0.51 | 0.83 | 0.82 | 1.97 | 21120 | 2861 | 3 | 0 | 0 | 0 | 0 | logfile |