Table showing results for April 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RDR	4828	2021-04-05	2019-04-12	4.1	4.19	4.13	4.1	0.007	0.94	0.0	0.05	14.97	0.01	1.908	6.95	0.44	5.2	94.6	0.2	-4.22	0.67	0.74	—	4.1	0.003	0.66	0.0	0.04	13.98	0.00	2.020	13.27	0.00	4.4	95.5	0.1	-0.27	1.32	0.69	0.78	—	53748	7103	37	0	11	0	0	logfile
✔	6RD8	4809	2021-04-02	2019-04-12	3.08	3.22	3.08	3.2	0.008	0.90	0.0	0.05	14.78	0.01	1.790	6.40	0.45	2.3	97.5	0.1	-2.59	0.58	0.85	3.29	3.2	0.003	0.58	0.0	0.04	13.99	0.00	2.034	8.91	0.06	2.3	97.7	0.0	2.49	0.50	0.59	0.87	2.92	17312	2309	25	0	1	18	0	logfile
✔	6RDB	4812	2021-04-04	2019-04-12	2.8	2.89	2.82	2.9	0.008	1.00	0.0	0.06	14.82	0.01	0.351	8.62	1.23	4.1	95.8	0.1	-4.44	0.70	0.84	3.24	2.9	0.009	0.67	0.0	0.04	13.18	0.00	1.894	9.82	0.08	3.7	96.3	0.0	-0.14	0.54	0.71	0.86	3.33	33961	4506	31	0	10	40	0	logfile
✔	6RDQ	4827	2021-04-05	2019-04-12	4.0	3.99	—	3.9	0.007	0.94	0.0	0.05	14.97	0.01	1.908	6.95	0.44	5.2	94.6	0.2	-4.22	0.72	0.79	—	3.9	0.004	0.69	0.0	0.04	14.12	0.00	1.968	12.30	0.02	4.9	95.0	0.1	-0.21	0.65	0.72	0.81	—	53748	7103	37	0	11	0	0	logfile
✔	6RFR	4873	2021-04-05	2019-04-16	3.2	3.36	—	3.4	0.012	1.52	2.0	0.93	11.67	0.01	2.078	8.36	0.16	6.0	93.9	0.1	-3.68	0.74	0.81	2.59	3.4	0.008	1.51	0.0	0.28	13.59	0.00	1.259	9.37	0.04	4.0	95.9	0.0	0.23	2.75	0.76	0.86	2.98	65934	8057	65	0	49	0	0	logfile
✔	6RDA	4811	2021-04-02	2019-04-12	3.04	3.20	2.92	3.1	0.013	1.04	0.0	0.06	13.77	0.01	2.075	3.87	0.58	5.1	94.7	0.3	-5.84	0.57	0.86	3.66	3.1	0.003	0.62	0.0	0.04	13.68	0.00	2.067	7.06	0.00	3.6	96.4	0.0	1.08	1.58	0.58	0.87	3.02	19856	2597	18	0	1	30	0	logfile
✔	6RD9	4810	2021-04-05	2019-04-12	3.0	3.00	—	3.1	0.014	1.12	0.0	0.07	14.22	0.01	1.876	6.04	0.69	4.7	95.0	0.2	-5.13	0.71	0.84	3.64	3.0	0.003	0.63	0.0	0.04	13.12	0.00	1.928	8.80	0.02	3.4	96.5	0.1	0.33	1.17	0.76	0.87	3.25	53776	7103	41	0	11	28	0	logfile
✔	6RD7	4808	2021-04-02	2019-04-12	2.73	2.87	2.70	2.9	0.006	0.89	0.0	0.05	13.56	0.01	1.905	7.85	0.84	1.5	98.3	0.2	-1.88	0.58	0.85	2.96	2.9	0.003	0.55	0.0	0.04	12.65	0.00	2.121	7.20	0.06	2.6	97.4	0.0	2.54	0.53	0.59	0.86	3.24	17406	2309	26	0	1	113	0	logfile
✔	6RDM	4823	2021-04-04	2019-04-12	3.44	3.54	3.79	3.5	0.007	0.94	0.0	0.06	14.22	0.01	2.103	6.98	0.59	4.8	95.0	0.2	-4.38	0.65	0.80	1.94	3.5	0.004	0.69	0.0	0.04	14.02	0.00	1.931	12.93	0.00	4.6	95.3	0.1	-0.68	1.26	0.66	0.82	1.77	33891	4502	25	0	10	0	0	logfile
✔	6RDK	4821	2021-04-05	2019-04-12	3.7	3.64	—	3.7	0.006	0.91	0.0	0.06	14.09	0.01	2.103	6.37	0.44	4.9	94.9	0.2	-4.35	0.70	0.82	2.01	3.7	0.003	0.63	0.0	0.04	14.02	0.00	1.982	10.89	0.00	4.1	95.9	0.1	-0.01	1.24	0.69	0.82	1.77	53748	7103	37	0	11	0	0	logfile
✘	6KiG	9995	2021-04-02	2019-07-18	2.9	2.98	—	2.9	0.007	1.00	0.0	0.06	20.59	0.03	1.361	8.20	0.03	2.9	97.1	0.0	-2.57	0.69	0.74	2.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	143022	12888	108	0	846	54	0	logfile
✔	6RD4	4805	2021-04-04	2019-04-12	2.9	2.95	—	2.9	0.014	1.12	0.0	0.07	14.22	0.01	0.776	6.58	0.69	4.7	95.0	0.2	-5.13	0.74	0.83	3.17	2.9	0.002	0.64	0.0	0.04	13.18	0.00	2.004	9.32	0.05	3.2	96.7	0.1	1.03	0.69	0.78	0.86	2.96	107552	14206	82	0	22	56	0	logfile
✔	6RDC	4813	2021-04-05	2019-04-12	3.2	3.06	—	3.2	0.013	1.07	1.0	0.06	13.88	0.01	1.864	5.66	0.41	5.2	94.6	0.2	-5.20	0.72	0.84	3.50	3.2	0.003	0.62	0.0	0.04	13.66	0.00	2.008	8.55	0.04	3.5	96.4	0.1	0.24	1.17	0.74	0.86	2.87	53776	7103	44	0	11	28	0	logfile
✔	6RES	4855	2021-04-05	2019-04-12	4.3	4.30	—	4.2	0.006	0.96	0.0	0.06	15.02	0.01	1.680	8.22	0.41	6.0	93.9	0.1	-5.14	0.64	0.77	—	4.2	0.007	0.84	0.0	0.05	14.53	0.01	1.845	19.03	0.00	6.7	93.1	0.1	-1.03	0.73	0.65	0.79	—	53756	7104	37	0	11	0	0	logfile
✔	6RDZ	4836	2021-04-05	2019-04-12	3.5	3.36	—	3.4	0.009	0.96	1.0	0.06	14.94	0.01	1.846	6.03	0.43	5.4	94.4	0.2	-4.22	0.69	0.82	2.47	3.4	0.003	0.60	0.0	0.04	14.16	0.00	2.002	9.95	0.07	3.8	96.1	0.1	0.20	0.53	0.69	0.82	2.23	53720	7099	37	0	11	0	0	logfile
✔	6RDG	4817	2021-04-04	2019-04-12	2.9	2.99	2.90	3.0	0.005	0.83	0.0	0.05	13.99	0.01	1.951	6.35	0.22	3.6	96.2	0.2	-4.83	0.69	0.84	3.54	3.0	0.003	0.60	0.0	0.04	13.17	0.00	1.986	9.22	0.00	3.3	96.6	0.1	-0.11	2.17	0.71	0.86	2.98	33964	4507	31	0	10	34	0	logfile
✔	6RE8	4845	2021-04-05	2019-04-12	3.8	3.75	—	3.8	0.006	0.87	0.0	0.05	14.58	0.01	1.985	5.75	0.21	4.3	95.5	0.2	-4.12	0.67	0.81	1.73	3.8	0.004	0.65	0.0	0.04	14.08	0.00	1.901	10.95	0.00	4.4	95.5	0.1	0.00	0.63	0.67	0.82	1.57	53720	7099	37	0	11	0	0	logfile
✔	6RDE	4815	2021-04-04	2019-04-12	2.9	2.95	2.95	2.9	0.010	1.00	0.0	0.06	14.77	0.01	1.688	6.54	0.39	4.7	95.2	0.2	-4.69	0.71	0.85	3.52	2.9	0.004	0.65	0.0	0.04	13.95	0.00	1.961	10.54	0.00	3.6	96.2	0.1	-0.43	1.58	0.70	0.86	3.30	33926	4502	31	0	10	32	0	logfile
✔	6RER	4854	2021-04-04	2019-04-12	2.9	3.02	3.05	3.0	0.006	0.89	0.0	0.05	14.31	0.01	2.219	5.41	0.17	4.3	95.6	0.1	-3.68	0.66	0.82	2.83	3.0	0.003	0.61	0.0	0.04	13.36	0.00	1.951	10.13	0.03	3.2	96.7	0.1	0.00	1.23	0.67	0.85	2.73	33899	4503	25	0	10	0	0	logfile
✔	6RE5	4842	2021-04-05	2019-04-12	3.2	3.28	—	3.3	0.010	0.95	0.0	0.06	14.48	0.01	2.163	5.74	0.27	4.8	95.0	0.2	-3.94	0.72	0.85	2.85	3.3	0.003	0.57	0.0	0.04	13.93	0.00	2.008	8.67	0.04	3.4	96.5	0.1	0.47	0.51	0.71	0.85	2.40	53720	7099	37	0	11	0	0	logfile

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