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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7JG8 | 22314 | 2022-12-14 | 2020-07-18 | 3.3 | 2.35 | 3.38 | 3.3 | 0.009 | 1.50 | 0.0 | 0.20 | 7.20 | 0.01 | 2.424 | 0.51 | 0.00 | 3.2 | 96.6 | 0.2 | -1.30 | 0.62 | 0.55 | — | 3.4 | 0.003 | 0.83 | 0.0 | 0.08 | 5.47 | 0.00 | 2.289 | 1.81 | 0.00 | 7.8 | 92.1 | 0.1 | -1.42 | 1.28 | 0.72 | 0.70 | — | 19573 | 4827 | 26 | 0 | 7 | 0 | 0 | logfile |
✔ | 6oZC | 20224 | 2022-12-15 | 2019-05-15 | 3.79 | 4.35 | — | 4.2 | 0.022 | 1.83 | 0.0 | 0.11 | 10.38 | 0.01 | 2.303 | 1.22 | 0.00 | 3.1 | 96.2 | 0.7 | 0.38 | 0.79 | 0.82 | 2.11 | 4.2 | 0.004 | 0.74 | 0.0 | 0.04 | 14.06 | 0.00 | 2.084 | 13.37 | 0.35 | 5.4 | 94.5 | 0.1 | -0.37 | 1.62 | 0.78 | 0.80 | 1.52 | 25821 | 3027 | 54 | 0 | 186 | 0 | 0 | logfile |
✔ | 6XE6 | 22144 | 2022-12-11 | 2020-06-12 | 4.53 | 4.61 | — | 4.5 | 0.011 | 1.40 | 2.0 | 0.07 | 14.92 | 0.01 | 1.098 | 10.14 | 1.05 | 11.3 | 87.4 | 1.2 | -4.98 | 0.52 | 0.76 | — | 4.5 | 0.003 | 0.76 | 0.0 | 0.04 | 13.55 | 0.00 | 2.180 | 13.85 | 0.00 | 9.8 | 89.7 | 0.5 | -1.86 | 1.21 | 0.53 | 0.75 | — | 6530 | 826 | 1 | 0 | 6 | 0 | 0 | logfile |
✔ | 6WHX | 21679 | 2022-12-14 | 2020-04-08 | 4.09 | 4.50 | — | 4.4 | 0.007 | 0.87 | 0.0 | 0.05 | 14.66 | 0.01 | 2.048 | 18.84 | 0.13 | 19.4 | 80.6 | 0.0 | -5.50 | 0.59 | 0.70 | — | 4.4 | 0.003 | 0.68 | 0.0 | 0.04 | 13.64 | 0.00 | 2.136 | 10.79 | 0.00 | 8.7 | 91.2 | 0.0 | -2.20 | 0.53 | 0.62 | 0.74 | — | 22925 | 3154 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 6Wi1 | 21682 | 2022-12-15 | 2020-04-08 | 3.62 | 4.11 | — | 3.9 | 0.007 | 0.84 | 0.0 | 0.10 | 13.76 | 0.01 | 2.127 | 13.83 | 0.70 | 14.5 | 85.1 | 0.4 | -4.55 | 0.75 | 0.75 | 1.81 | 3.9 | 0.003 | 0.76 | 0.0 | 0.04 | 15.10 | 0.00 | 2.055 | 10.60 | 0.13 | 9.5 | 90.3 | 0.2 | -1.37 | 0.49 | 0.77 | 0.81 | 1.34 | 23366 | 3182 | 12 | 0 | 16 | 0 | 0 | logfile |
✔ | 6YSL | 10899 | 2022-12-12 | 2020-04-22 | 3.5 | 3.58 | 3.41 | 3.5 | 0.006 | 1.17 | 0.0 | 0.06 | 12.21 | 0.01 | 2.232 | 5.98 | 0.47 | 9.0 | 90.9 | 0.1 | -4.73 | 0.58 | 0.72 | 1.19 | 3.5 | 0.004 | 0.91 | 0.0 | 0.05 | 16.72 | 0.00 | 2.041 | 16.16 | 0.56 | 7.3 | 92.7 | 0.0 | -0.91 | 1.20 | 0.60 | 0.71 | 1.07 | 10128 | 1324 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6M66 | 30114 | 2022-12-13 | 2020-03-13 | 4.1 | 4.40 | — | 4.2 | 0.005 | 1.08 | 0.0 | 0.06 | 16.35 | 0.01 | 2.231 | 9.42 | 0.00 | 8.8 | 91.2 | 0.0 | -5.00 | 0.64 | 0.75 | — | 4.2 | 0.003 | 0.79 | 0.0 | 0.05 | 14.81 | 0.01 | 2.047 | 14.43 | 0.00 | 8.1 | 91.9 | 0.0 | -1.00 | 1.67 | 0.64 | 0.74 | — | 14938 | 1855 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UW8 | 20919 | 2022-12-14 | 2019-11-04 | 4.02 | 4.12 | — | 4.0 | 0.005 | 0.90 | 4.0 | 0.05 | 14.81 | 0.01 | 2.173 | 4.55 | 0.00 | 6.4 | 93.6 | 0.0 | -4.15 | 0.69 | 0.83 | — | 4.0 | 0.002 | 0.59 | 0.0 | 0.04 | 14.24 | 0.00 | 2.136 | 7.86 | 0.00 | 5.7 | 94.3 | 0.0 | 0.16 | 1.66 | 0.69 | 0.82 | — | 19640 | 2408 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WHV | 21677 | 2022-12-15 | 2020-04-08 | 4.05 | 4.56 | — | 4.4 | 0.007 | 0.85 | 1.0 | 0.09 | 14.94 | 0.01 | 2.076 | 20.04 | 0.33 | 17.3 | 82.6 | 0.1 | -5.39 | 0.69 | 0.78 | — | 4.4 | 0.003 | 0.71 | 1.0 | 0.04 | 14.04 | 0.00 | 2.135 | 10.66 | 0.04 | 8.4 | 91.6 | 0.0 | -2.30 | 0.58 | 0.69 | 0.78 | — | 23764 | 3170 | 9 | 0 | 9 | 0 | 0 | logfile |
✔ | 6WHY | 21680 | 2022-12-15 | 2020-04-08 | 4.03 | 4.59 | — | 4.4 | 0.006 | 0.83 | 2.0 | 0.06 | 14.57 | 0.00 | 2.150 | 16.67 | 1.71 | 15.5 | 84.5 | 0.0 | -5.12 | 0.61 | 0.65 | — | 4.4 | 0.004 | 0.71 | 2.0 | 0.04 | 13.63 | 0.00 | 2.112 | 11.64 | 0.00 | 11.2 | 88.8 | 0.0 | -2.10 | 0.53 | 0.69 | 0.76 | — | 22198 | 3098 | 10 | 0 | 8 | 0 | 0 | logfile |
✔ | 6Wi0 | 21681 | 2022-12-16 | 2020-04-08 | 4.27 | 4.76 | — | 4.5 | 0.005 | 0.77 | 2.0 | 0.06 | 13.38 | 0.00 | 2.134 | 17.14 | 0.60 | 10.2 | 89.6 | 0.2 | -4.55 | 0.62 | 0.68 | — | 4.5 | 0.005 | 0.74 | 2.0 | 0.05 | 12.83 | 0.00 | 2.115 | 13.10 | 0.05 | 9.7 | 90.2 | 0.1 | -1.47 | 0.45 | 0.71 | 0.79 | — | 21964 | 3112 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 6WHW | 21678 | 2022-12-15 | 2020-04-08 | 4.09 | 3.98 | — | 3.9 | 0.009 | 0.86 | 0.0 | 0.05 | 14.46 | 0.01 | 2.086 | 15.49 | 0.74 | 14.8 | 85.0 | 0.2 | -5.22 | 0.71 | 0.77 | — | 3.9 | 0.002 | 0.62 | 1.0 | 0.04 | 13.60 | 0.00 | 2.146 | 7.92 | 0.00 | 6.2 | 93.7 | 0.1 | -1.20 | 0.56 | 0.72 | 0.78 | — | 23640 | 3160 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 7JSV | 22460 | 2022-12-14 | 2020-08-16 | 3.9 | 3.98 | — | 4.0 | 0.020 | 2.10 | 0.0 | 0.10 | 13.46 | 0.01 | 2.348 | 6.75 | 0.00 | 0.0 | 100.0 | 0.0 | 1.16 | 0.61 | 0.80 | 2.43 | 4.0 | 0.003 | 0.79 | 0.0 | 0.04 | 15.99 | 0.00 | 2.123 | 12.88 | 0.38 | 1.0 | 99.0 | 0.0 | 0.10 | 0.90 | 0.64 | 0.83 | 2.63 | 22140 | 2706 | 82 | 0 | 41 | 0 | 0 | logfile |
✔ | 6WHT | 21675 | 2022-12-14 | 2020-04-08 | 4.39 | 5.00 | — | 4.6 | 0.006 | 0.85 | 0.0 | 0.05 | 13.38 | 0.01 | 1.983 | 23.64 | 0.63 | 17.3 | 82.3 | 0.3 | -5.16 | 0.65 | 0.69 | — | 4.6 | 0.003 | 0.69 | 0.0 | 0.04 | 12.27 | 0.00 | 2.071 | 12.77 | 0.00 | 9.9 | 90.0 | 0.0 | -1.39 | 0.50 | 0.75 | 0.79 | — | 20532 | 3082 | 10 | 0 | 8 | 0 | 0 | logfile |
✔ | 6WHS | 21674 | 2022-12-14 | 2020-04-08 | 4.0 | 4.40 | — | 4.2 | 0.010 | 0.93 | 0.0 | 0.05 | 14.29 | 0.01 | 2.088 | 19.72 | 0.82 | 16.6 | 83.4 | 0.0 | -4.97 | 0.70 | 0.75 | — | 4.2 | 0.003 | 0.71 | 0.0 | 0.04 | 15.31 | 0.00 | 2.146 | 10.17 | 0.46 | 7.6 | 92.4 | 0.0 | -1.16 | 0.52 | 0.77 | 0.83 | — | 22866 | 3172 | 10 | 0 | 12 | 0 | 0 | logfile |
✔ | 6Q0X | 20555 | 2022-12-12 | 2019-08-02 | 4.2 | 4.30 | — | 4.2 | 0.007 | 0.88 | 0.0 | 0.05 | 17.07 | 0.00 | 2.139 | 24.20 | 1.21 | 8.1 | 91.9 | 0.0 | -3.83 | 0.68 | 0.72 | — | 4.2 | 0.004 | 0.77 | 0.0 | 0.04 | 16.05 | 0.00 | 2.168 | 19.80 | 0.00 | 6.9 | 93.1 | 0.0 | 0.21 | 1.42 | 0.68 | 0.73 | — | 12468 | 1492 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WHU | 21676 | 2022-12-15 | 2020-04-08 | 3.93 | 4.34 | — | 4.2 | 0.009 | 0.94 | 2.0 | 0.05 | 15.34 | 0.00 | 2.095 | 19.26 | 0.72 | 18.0 | 81.8 | 0.2 | -4.87 | 0.69 | 0.75 | 1.46 | 4.2 | 0.004 | 0.76 | 2.0 | 0.05 | 16.41 | 0.00 | 2.117 | 12.50 | 0.47 | 12.0 | 88.0 | 0.0 | -1.74 | 0.54 | 0.73 | 0.81 | 1.70 | 23368 | 3120 | 10 | 0 | 16 | 0 | 0 | logfile |
✔ | 6WHR | 21673 | 2022-12-15 | 2020-04-08 | 3.99 | 4.51 | — | 4.3 | 0.015 | 1.22 | 0.0 | 0.07 | 15.42 | 0.01 | 1.968 | 30.82 | 2.94 | 21.2 | 78.0 | 0.8 | -5.90 | 0.69 | 0.73 | 1.29 | 4.3 | 0.003 | 0.73 | 0.0 | 0.04 | 15.83 | 0.00 | 2.179 | 10.99 | 0.30 | 8.0 | 91.9 | 0.1 | -1.51 | 0.56 | 0.77 | 0.82 | 0.76 | 23370 | 3166 | 10 | 0 | 14 | 0 | 0 | logfile |
✔ | 6VYF | 21458 | 2022-12-13 | 2020-02-26 | 3.3 | 3.38 | — | 3.3 | 0.005 | 0.68 | 0.0 | 0.04 | 13.96 | 0.00 | 2.223 | 8.29 | 0.27 | 8.7 | 91.3 | 0.0 | -3.53 | 0.73 | 0.87 | 2.78 | 3.3 | 0.006 | 0.63 | 0.0 | 0.05 | 15.62 | 0.00 | 2.147 | 9.92 | 0.54 | 10.1 | 89.9 | 0.0 | -1.15 | 0.90 | 0.73 | 0.89 | 2.92 | 13624 | 1728 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ND0 | 0439 | 2022-12-14 | 2018-12-13 | 3.5 | 3.65 | — | 3.6 | 0.008 | 0.94 | 0.0 | 0.06 | 10.80 | 0.01 | 2.178 | 5.17 | 0.43 | 7.8 | 92.0 | 0.2 | -4.62 | 0.60 | 0.75 | 3.00 | 3.6 | 0.004 | 0.70 | 1.0 | 0.05 | 14.68 | 0.00 | 2.122 | 11.06 | 0.31 | 7.3 | 92.6 | 0.1 | -1.45 | 0.83 | 0.68 | 0.81 | 2.52 | 22964 | 2908 | 4 | 0 | 0 | 0 | 0 | logfile |