Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6QLE	4580	2021-06-02	2019-01-31	3.55	3.69	—	3.6	0.005	0.84	0.0	0.05	14.61	0.01	2.282	3.37	0.27	5.4	94.6	0.1	-3.18	0.73	0.77	1.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18162	2350	11	0	65	0	0	logfile
✔	5UoW	8579	2021-06-04	2017-02-01	4.5	8.74	—	7.2	0.011	1.84	17.0	0.10	14.78	0.02	1.072	53.93	10.98	4.5	94.5	1.0	-0.55	0.64	0.54	—	3.7	0.003	0.70	0.0	0.04	11.30	0.00	2.044	22.36	0.05	7.4	92.3	0.2	-0.32	2.65	0.77	0.83	—	24347	3186	10	0	446	0	0	logfile
✔	6U9G	20698	2021-06-02	2019-09-08	3.98	4.04	—	4.0	0.005	1.00	0.0	0.06	9.07	0.00	2.228	5.61	0.00	12.3	87.7	0.0	-4.65	0.78	0.80	2.19	4.0	0.003	0.65	0.0	0.05	15.19	0.00	2.127	10.19	0.36	9.1	90.9	0.0	-2.46	2.51	0.78	0.80	1.40	18219	2355	6	0	0	0	0	logfile
✔	6RiC	4888	2021-06-03	2019-04-23	2.8	2.91	2.91	2.8	0.006	0.76	0.0	0.05	14.01	0.01	2.068	5.10	0.03	3.5	96.5	0.0	-4.16	0.76	0.83	4.00	2.9	0.004	0.63	0.0	0.04	16.59	0.00	2.091	10.83	1.61	3.0	97.0	0.0	-0.01	1.01	0.82	0.88	3.33	29677	3663	12	0	5	0	0	logfile
✔	6QM7	4590	2021-06-05	2019-02-01	2.8	2.94	—	2.9	0.013	1.87	9.0	0.10	18.58	0.01	2.155	5.26	11.11	3.9	95.7	0.3	-2.65	0.80	0.90	3.81	2.9	0.004	0.58	0.0	0.04	18.08	0.00	2.115	9.76	3.17	2.0	98.0	0.1	1.16	1.62	0.79	0.88	3.42	49518	6350	58	0	2	334	0	logfile
✔	5WC3	8795	2021-06-06	2017-06-29	3.5	3.53	—	3.5	0.015	1.18	0.0	0.06	9.37	0.01	1.925	12.90	0.00	8.0	90.5	1.5	-5.20	0.79	0.76	2.30	3.5	0.003	0.64	0.0	0.05	11.99	0.00	2.159	7.13	0.00	10.2	89.1	0.7	-1.80	1.61	0.77	0.73	1.39	65880	4170	30	0	0	0	33390	logfile
✔	6KLX	0721	2021-06-03	2019-07-30	2.9	3.09	—	3.0	0.008	0.69	0.0	0.05	13.80	0.01	2.177	6.64	0.13	6.8	93.2	0.0	-3.59	0.73	0.85	4.20	3.0	0.002	0.51	0.0	0.04	15.93	0.00	2.192	6.81	1.79	5.1	94.9	0.0	-0.86	1.18	0.75	0.86	3.80	20055	2576	14	0	14	0	0	logfile
✔	5H64	6668	2021-06-05	2016-11-10	4.4	3.65	—	3.4	0.011	1.57	0.0	0.07	11.97	0.01	1.144	69.67	0.80	17.3	80.2	2.4	-5.94	0.74	0.55	—	3.4	0.011	0.98	0.0	0.05	12.96	0.01	2.064	26.73	0.57	13.2	85.9	0.9	-2.21	1.10	0.85	0.71	—	45252	6430	6	0	0	0	0	logfile
✔	5G04	3385	2021-06-06	2016-03-16	3.9	3.86	—	3.8	0.019	1.88	181.0	0.13	19.17	0.01	1.629	17.35	13.63	6.3	91.5	2.3	-2.36	0.78	0.65	0.91	3.8	0.008	0.90	0.0	0.04	18.30	0.01	2.017	18.73	0.57	5.8	93.7	0.5	0.16	1.76	0.83	0.77	0.63	65481	8322	22	0	3	0	0	logfile
✔	6KLo	0713	2021-06-03	2019-07-30	2.8	3.01	—	2.9	0.005	0.60	0.0	0.05	13.06	0.00	2.185	5.56	0.12	5.9	94.1	0.0	-3.14	0.77	0.87	4.15	2.9	0.003	0.56	0.0	0.05	15.89	0.00	2.192	5.36	1.04	6.2	93.8	0.0	-0.75	0.40	0.76	0.88	3.88	23275	2972	15	0	14	0	0	logfile
✔	6i1Y	0327	2021-06-05	2018-10-30	3.4	3.52	—	3.4	0.015	2.01	16.0	0.10	13.31	0.02	1.301	74.35	0.72	10.9	85.8	3.3	-5.20	0.79	0.83	1.55	3.4	0.003	0.69	0.0	0.05	15.88	0.01	2.153	14.67	0.27	5.4	94.4	0.2	-1.51	1.92	0.78	0.79	1.73	56520	7440	15	0	0	0	0	logfile
✔	6oJ3	20086	2021-06-04	2019-04-10	4.5	4.52	4.52	4.5	0.010	1.29	0.0	0.07	10.21	0.01	2.062	3.53	0.01	9.0	91.0	0.0	-3.41	0.63	0.73	—	4.4	0.004	0.67	0.0	0.04	13.76	0.01	1.842	15.44	0.01	7.8	92.1	0.0	-0.80	2.20	0.66	0.77	—	148557	9072	11	0	0	0	74462	logfile
✔	6H3N	0136	2021-06-03	2018-07-19	3.25	3.45	—	3.4	0.015	1.53	0.0	0.07	10.78	0.01	2.457	1.23	0.00	4.7	94.6	0.7	-0.43	0.77	0.79	4.55	3.4	0.003	0.60	0.0	0.04	15.07	0.00	2.013	5.97	0.13	4.1	95.9	0.0	-0.37	1.47	0.73	0.78	3.94	29319	1881	3	0	0	0	14388	logfile
✔	5Z10	6865	2021-06-03	2017-12-22	3.97	4.10	—	4.0	0.006	1.05	0.0	0.06	15.59	0.01	2.234	6.44	0.79	8.0	92.0	0.0	-4.80	0.68	0.77	1.45	4.0	0.004	0.78	0.0	0.04	16.54	0.00	2.126	12.94	0.45	6.2	93.8	0.0	-0.17	0.64	0.67	0.74	1.15	29142	3912	3	0	0	0	0	logfile
✘	6HWH	0289	2021-06-04	2018-10-12	3.3	3.56	—	3.5	0.013	2.17	1.0	0.20	12.78	0.01	0.691	7.65	0.51	9.4	90.5	0.1	-5.53	0.71	0.81	4.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	40632	4916	40	0	420	0	0	logfile
✔	6K7G	9931	2021-06-02	2019-06-07	3.3	3.42	3.12	3.4	0.030	1.47	0.0	0.18	15.60	0.01	2.262	5.61	0.43	9.1	90.7	0.2	-4.12	0.61	0.85	3.53	3.4	0.004	0.86	0.0	0.06	16.72	0.01	1.351	12.69	0.00	8.1	91.8	0.1	-2.75	0.35	0.70	0.89	3.23	10569	1313	2	0	6	0	0	logfile
✔	6o6A	0631	2021-06-03	2019-03-05	3.6	3.69	—	3.6	0.034	1.38	0.0	0.22	15.77	0.01	1.986	6.00	0.00	7.4	92.6	0.0	-6.33	0.60	0.77	2.17	3.6	0.007	1.05	1.0	0.08	17.26	0.01	2.065	19.28	0.64	7.4	92.6	0.0	-4.48	2.43	0.62	0.78	2.08	27220	3312	8	0	8	0	0	logfile
✔	6E9Z	9021	2021-06-04	2018-08-01	3.4	3.50	—	3.4	0.011	0.85	0.0	0.05	10.27	0.01	1.132	13.16	0.00	4.5	95.1	0.4	-6.29	0.55	0.77	3.60	3.5	0.003	0.61	0.0	0.03	16.06	0.00	1.890	8.31	0.31	2.9	97.1	0.0	2.85	1.61	0.58	0.81	1.32	32652	2025	9	0	0	0	16830	logfile
✔	6K7H	9932	2021-06-02	2019-06-07	3.22	3.37	3.03	3.3	0.029	1.41	0.0	0.18	15.66	0.01	2.274	5.60	1.13	6.5	93.5	0.0	-3.82	0.65	0.85	3.45	3.3	0.006	0.97	0.0	0.06	16.64	0.01	2.220	12.15	0.52	6.6	93.4	0.0	-2.84	0.32	0.69	0.89	3.14	10577	1312	2	0	6	0	0	logfile
✔	6EF8	9046	2021-06-03	2018-08-16	3.7	3.63	—	3.6	0.007	1.38	0.0	0.06	14.34	0.01	2.023	12.83	0.00	11.4	88.1	0.5	-4.03	0.76	0.83	2.27	3.6	0.006	0.88	0.0	0.04	17.31	0.00	1.717	15.93	0.41	13.4	86.3	0.3	-2.38	0.57	0.77	0.85	1.88	22911	2849	14	0	42	0	0	logfile

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