Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PYH	20524	2022-07-03	2019-07-29	4.3	4.52	—	4.3	0.016	1.05	0.0	0.05	14.64	0.01	2.079	28.82	0.55	18.2	81.6	0.2	-5.21	0.84	0.83	—	4.3	0.003	0.66	0.0	0.04	13.76	0.00	2.006	12.96	0.07	8.1	91.9	0.0	-2.26	0.65	0.84	0.82	—	13187	1648	3	0	0	0	0	logfile
✔	6MRT	9212	2022-07-02	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.46	0.0	0.03	15.43	0.00	2.226	3.14	1.29	0.5	99.5	0.0	5.71	3.08	0.73	0.87	2.07	26868	3420	12	0	0	0	0	logfile
✔	6Q2R	20578	2022-07-06	2019-08-08	4.3	4.92	—	4.6	0.004	0.81	0.0	0.05	8.41	0.01	1.384	4.93	0.00	5.4	94.6	0.0	-3.85	0.68	0.53	—	4.6	0.004	0.73	0.0	0.04	11.32	0.00	2.062	19.40	0.06	6.7	93.3	0.0	-1.69	2.62	0.75	0.72	—	30392	3800	16	0	40	0	0	logfile
✔	6H05	0108	2022-07-07	2018-07-06	2.9	3.15	—	3.5	0.016	1.09	0.0	0.07	9.74	0.01	0.426	17.81	0.00	8.5	91.5	0.0	-5.50	0.36	0.13	0.50	3.1	0.007	1.02	0.0	0.05	15.81	0.01	1.535	23.05	2.30	5.2	94.8	0.0	-1.96	1.64	0.58	0.48	0.74	44544	5664	24	0	0	0	0	logfile
✔	5LKi	4068	2022-07-03	2016-07-22	3.46	3.72	—	3.5	0.013	1.24	5.0	0.06	10.71	0.01	0.579	39.63	0.18	7.7	91.7	0.6	-4.39	0.65	0.79	2.37	3.5	0.003	0.82	0.0	0.04	15.10	0.00	2.086	15.11	0.39	6.9	92.7	0.4	0.29	0.82	0.63	0.80	1.58	55415	7135	5	0	0	0	0	logfile
✔	6oHY	20074	2022-07-04	2019-04-08	4.1	4.28	4.05	4.2	0.006	0.98	0.0	0.06	11.07	0.01	2.288	4.35	0.40	10.5	88.9	0.5	-3.30	0.79	0.79	—	4.2	0.003	0.67	0.0	0.05	12.62	0.00	2.066	10.01	0.00	9.7	90.2	0.1	-1.81	1.24	0.80	0.81	—	15192	1701	12	0	126	0	0	logfile
✔	6E1H	8955	2022-07-04	2018-07-09	3.5	3.83	—	3.8	0.008	1.18	0.0	0.06	12.25	0.01	1.962	5.86	1.76	9.9	90.1	0.0	-3.67	0.60	0.76	2.52	3.8	0.011	1.11	0.0	0.05	15.87	0.01	1.782	21.44	0.34	8.6	91.3	0.1	-1.31	0.83	0.59	0.77	1.69	16667	2120	4	0	4	0	0	logfile
✔	6MRW	9214	2022-07-03	2018-10-15	4.3	4.76	—	4.3	0.006	0.98	0.0	0.04	10.35	0.01	2.080	4.61	0.41	2.1	97.9	0.0	-0.19	0.82	0.84	—	4.3	0.007	0.64	1.0	0.03	11.80	0.00	2.080	7.14	0.00	2.0	98.0	0.0	6.06	1.26	0.83	0.86	—	31346	3990	14	0	0	0	0	logfile
✔	6RQJ	4983	2022-07-04	2019-05-15	3.5	4.14	3.49	3.7	0.006	0.74	0.0	0.11	14.34	0.00	2.041	11.21	0.06	6.9	92.9	0.2	-4.28	0.84	0.75	2.30	3.8	0.003	0.64	0.0	0.04	15.37	0.00	2.181	11.01	0.24	5.3	94.7	0.0	-0.71	0.49	0.89	0.85	2.06	14971	1899	6	0	2	0	0	logfile
✘	6oT0	20190	2022-07-03	2019-05-02	3.84	4.10	—	4.4	0.009	1.12	0.0	0.07	14.51	0.01	1.376	3.44	0.79	6.3	93.7	0.0	-3.15	0.53	0.75	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10572	1345	7	0	1	0	0	logfile
✔	5LJV	4062	2022-07-04	2016-07-21	3.64	3.75	—	3.7	0.030	2.85	85.0	0.16	18.81	0.02	2.070	21.58	11.82	7.4	89.7	2.9	-4.53	0.71	0.84	2.85	3.7	0.005	0.84	0.0	0.05	16.76	0.01	1.918	11.91	0.87	4.0	96.0	0.0	-0.23	2.49	0.72	0.81	1.95	15000	1950	12	0	12	0	0	logfile
✔	4UQ8	2676	2022-07-06	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	64.12	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.54	0.0	0.41	5.50	0.00	2.100	23.02	0.00	0.0	0.0	0.0	—	2.11	0.61	0.83	—	28647	33	54	0	5686	0	0	logfile
✔	6R69	4733	2022-07-03	2019-03-26	3.65	4.14	3.57	3.7	0.005	0.90	0.0	0.04	14.42	0.01	2.191	13.18	0.15	9.8	89.8	0.4	-3.99	0.75	0.76	0.73	3.8	0.004	0.94	0.0	0.05	16.08	0.01	2.138	14.95	0.36	7.6	92.3	0.1	0.08	0.94	0.76	0.83	0.86	12541	1629	10	0	0	0	0	logfile
✔	6ACJ	9593	2022-07-06	2018-07-26	4.2	4.37	—	4.2	0.010	1.33	2.0	0.07	11.28	0.01	1.731	12.06	0.61	16.8	82.7	0.6	-4.76	0.74	0.71	—	4.2	0.004	0.82	0.0	0.05	12.45	0.01	2.057	21.34	0.06	14.4	85.3	0.2	-2.86	1.55	0.75	0.72	—	29715	3784	4	0	0	0	0	logfile
✔	6JXR	9895	2022-07-03	2019-04-24	3.7	3.95	—	3.9	0.008	1.01	0.0	0.06	10.83	0.01	2.273	5.94	0.74	7.2	92.6	0.2	-3.45	0.69	0.78	2.74	3.9	0.004	0.71	0.0	0.04	15.86	0.01	2.134	11.63	0.64	6.7	93.2	0.1	-0.19	1.72	0.67	0.80	2.26	8437	1073	8	0	0	0	0	logfile
✔	6CFW	7468	2022-07-04	2018-02-17	3.7	3.82	—	3.8	0.010	1.27	1.0	0.07	12.05	0.01	1.968	4.55	1.60	10.7	89.0	0.4	-4.93	0.70	0.86	3.46	3.8	0.009	1.00	2.0	0.04	15.30	0.01	2.054	8.02	0.53	9.3	90.6	0.1	-1.54	2.28	0.71	0.86	2.13	19589	2530	17	0	4	0	0	logfile
✔	6Q2o	20576	2022-07-04	2019-08-08	3.65	3.77	—	3.9	0.004	0.77	0.0	0.05	8.38	0.01	1.534	3.25	0.12	5.6	94.4	0.0	-3.75	0.48	0.23	0.05	3.6	0.011	1.13	2.0	0.05	14.90	0.01	2.030	15.53	0.78	7.4	92.6	0.0	-1.91	1.86	0.66	0.62	0.66	15196	1900	8	0	20	0	0	logfile
✔	6VV5	21391	2022-07-05	2020-02-17	3.5	3.62	3.41	3.6	0.017	1.66	0.0	0.09	11.16	0.03	2.262	5.10	1.26	1.6	98.3	0.1	0.88	0.74	0.84	3.28	3.6	0.003	0.59	0.0	0.04	14.47	0.00	2.223	6.55	0.10	3.4	96.6	0.0	0.10	1.37	0.74	0.84	2.75	26874	3294	6	0	102	0	0	logfile
✔	6QS4	4621	2022-07-06	2019-02-20	4.2	7.28	4.28	6.5	0.009	1.07	0.0	0.06	10.54	0.01	2.235	8.01	0.10	8.4	91.6	0.0	-3.77	0.83	0.65	—	6.5	0.003	0.67	0.0	0.04	11.93	0.00	2.098	20.68	0.03	5.6	94.4	0.0	0.14	1.67	0.90	0.84	—	28839	3622	13	0	11	0	0	logfile
✘	6NHV	9374	2022-07-03	2018-12-24	3.5	3.46	3.54	3.5	0.010	0.92	0.0	0.05	9.89	0.01	1.205	7.45	0.21	1.8	98.2	0.0	-3.60	0.62	0.71	1.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8948	1165	7	0	1	0	0	logfile

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