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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5M32 | 4146 | 2022-12-15 | 2016-10-14 | 3.8 | 3.96 | — | 3.8 | 0.009 | 1.47 | 12.0 | 0.07 | 13.19 | 0.01 | 0.185 | 19.68 | 3.10 | 14.4 | 83.9 | 1.7 | -5.42 | 0.81 | 0.79 | 1.92 | 3.8 | 0.004 | 0.83 | 0.0 | 0.05 | 14.78 | 0.00 | 1.713 | 15.31 | 0.49 | 11.4 | 88.3 | 0.3 | -1.89 | 1.49 | 0.83 | 0.81 | 1.30 | 76085 | 10500 | 52 | 0 | 8 | 0 | 0 | logfile |
✔ | 6HV8 | 0287 | 2022-12-12 | 2018-10-10 | 4.4 | 4.51 | — | 4.4 | 0.009 | 1.62 | 2.0 | 0.08 | 10.20 | 0.01 | 1.472 | 9.02 | 1.31 | 22.1 | 77.3 | 0.6 | -4.84 | 0.74 | 0.72 | — | 4.4 | 0.003 | 0.86 | 0.0 | 0.05 | 12.68 | 0.00 | 2.153 | 15.07 | 0.00 | 13.6 | 86.4 | 0.0 | -2.57 | 1.05 | 0.74 | 0.71 | — | 9206 | 1184 | 2 | 0 | 2 | 0 | 0 | logfile |
✔ | 6KXS | 0782 | 2022-12-14 | 2019-09-12 | 3.4 | 3.50 | — | 3.4 | 0.018 | 1.44 | 0.0 | 0.09 | 15.88 | 0.01 | 2.157 | 9.02 | 3.30 | 15.2 | 84.4 | 0.4 | -4.73 | 0.70 | 0.72 | 2.54 | 3.4 | 0.003 | 0.69 | 0.0 | 0.05 | 16.61 | 0.00 | 2.148 | 11.56 | 0.51 | 8.8 | 91.2 | 0.0 | -2.11 | 0.56 | 0.71 | 0.75 | 2.08 | 22499 | 2869 | 23 | 0 | 12 | 0 | 0 | logfile |
✔ | 6U2K | 20621 | 2022-12-11 | 2019-08-20 | 2.93 | 3.31 | 3.29 | 3.3 | 0.010 | 0.98 | 0.0 | 0.06 | 10.03 | 0.01 | 2.354 | 3.34 | 0.19 | 9.7 | 90.3 | 0.0 | -4.70 | 0.70 | 0.83 | 4.65 | 3.3 | 0.004 | 0.70 | 0.0 | 0.04 | 15.05 | 0.00 | 2.275 | 6.57 | 2.12 | 8.2 | 91.8 | 0.0 | -2.00 | 1.20 | 0.65 | 0.81 | 2.97 | 4719 | 604 | 3 | 0 | 4 | 0 | 0 | logfile |
✔ | 6SB3 | 10134 | 2022-12-15 | 2019-07-18 | 3.5 | 3.63 | 3.51 | 3.7 | 0.002 | 0.56 | 0.0 | 0.04 | 12.95 | 0.00 | 2.104 | 13.36 | 0.00 | 4.9 | 95.1 | 0.0 | -2.84 | 0.68 | 0.71 | 1.27 | 3.7 | 0.005 | 0.71 | 0.0 | 0.05 | 16.11 | 0.01 | 2.025 | 19.45 | 0.76 | 8.0 | 92.0 | 0.0 | -1.75 | 1.63 | 0.71 | 0.77 | 0.99 | 75712 | 9664 | 32 | 0 | 32 | 0 | 0 | logfile |
✔ | 6EZM | 4160 | 2022-12-20 | 2017-11-15 | 3.2 | 3.09 | — | 3.1 | 0.010 | 1.28 | 0.0 | 0.06 | 10.27 | 0.01 | 1.913 | 8.89 | 0.10 | 10.0 | 90.0 | 0.0 | -4.97 | 0.79 | 0.82 | 4.74 | 3.1 | 0.004 | 0.69 | 0.0 | 0.05 | 15.82 | 0.01 | 2.051 | 10.65 | 0.23 | 8.3 | 91.7 | 0.0 | -1.00 | 1.99 | 0.81 | 0.86 | 3.43 | 38400 | 5088 | 38 | 0 | 72 | 0 | 0 | logfile |
✘ | 6G2H | 4343 | 2022-12-19 | 2018-03-23 | 4.6 | 4.69 | — | 4.5 | 0.013 | 1.94 | 46.0 | 0.11 | 13.54 | 0.01 | 1.921 | 14.14 | 2.29 | 8.3 | 91.0 | 0.7 | -3.04 | 0.79 | 0.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 103896 | 6454 | 6 | 0 | 0 | 0 | 51852 | logfile |
✘ | 6UUZ | 20903 | 2022-12-18 | 2019-11-01 | 3.0 | 3.14 | — | 3.1 | 0.007 | 1.03 | 0.0 | 0.06 | 13.18 | 0.01 | 1.219 | 8.06 | 1.45 | 5.6 | 94.2 | 0.2 | -4.07 | 0.62 | 0.65 | 3.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31818 | 4084 | 10 | 0 | 4 | 2 | 0 | logfile |
✔ | 6MPH | 9189 | 2022-12-16 | 2018-10-06 | 3.8 | 4.28 | — | 3.9 | 0.006 | 0.79 | 0.0 | 0.05 | 12.56 | 0.01 | 2.286 | 6.16 | 6.01 | 5.3 | 94.6 | 0.2 | -3.46 | 0.84 | 0.85 | 2.34 | 3.9 | 0.003 | 0.70 | 0.0 | 0.04 | 14.24 | 0.00 | 2.068 | 13.92 | 0.33 | 5.2 | 94.8 | 0.0 | -1.06 | 0.76 | 0.84 | 0.85 | 2.02 | 32092 | 3843 | 72 | 0 | 155 | 0 | 0 | logfile |
✔ | 6iZR | 9757 | 2022-12-16 | 2018-12-20 | 4.7 | 4.86 | — | 4.7 | 0.004 | 0.90 | 0.0 | 0.05 | 11.50 | 0.01 | 2.086 | 6.64 | 0.26 | 6.9 | 93.1 | 0.0 | -4.07 | 0.68 | 0.78 | — | 4.7 | 0.004 | 0.86 | 0.0 | 0.05 | 12.98 | 0.00 | 2.077 | 22.21 | 0.00 | 6.6 | 93.4 | 0.0 | -0.51 | 2.07 | 0.66 | 0.71 | — | 84360 | 10470 | 60 | 0 | 60 | 0 | 0 | logfile |
✔ | 6MWQ | 9277 | 2022-12-14 | 2018-10-30 | 3.0 | 3.33 | 2.89 | 3.1 | 0.001 | 0.36 | 0.0 | 0.04 | 4.66 | 0.00 | 2.321 | 4.19 | 0.13 | 11.0 | 87.5 | 1.5 | -4.81 | 0.54 | 0.39 | 0.22 | 3.1 | 0.003 | 0.70 | 0.0 | 0.04 | 13.25 | 0.00 | 2.183 | 8.34 | 1.48 | 3.6 | 96.1 | 0.2 | -1.09 | 1.31 | 0.77 | 0.86 | 1.70 | 22072 | 2873 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 6JSi | 9882 | 2022-12-19 | 2019-04-08 | 4.7 | 4.70 | — | 4.6 | 0.007 | 1.48 | 0.0 | 0.06 | 15.33 | 0.01 | 2.231 | 10.68 | 2.42 | 23.2 | 72.3 | 4.5 | -6.05 | 0.64 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62820 | 5844 | 9 | 0 | 4044 | 0 | 0 | logfile |
✔ | 6XWQ | 10635 | 2022-12-12 | 2020-01-24 | 3.41 | 4.27 | — | 4.0 | 0.003 | 0.61 | 0.0 | 0.04 | 13.42 | 0.00 | 2.171 | 10.53 | 0.00 | 3.5 | 96.2 | 0.2 | -2.80 | 0.73 | 0.80 | 0.22 | 4.0 | 0.003 | 0.78 | 0.0 | 0.04 | 15.52 | 0.00 | 2.168 | 13.94 | 0.20 | 4.0 | 96.0 | 0.0 | 1.04 | 1.17 | 0.72 | 0.84 | 0.66 | 9572 | 1281 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N1V | 9319 | 2022-12-19 | 2018-11-12 | 4.0 | 4.63 | — | 4.2 | 0.008 | 0.96 | 0.0 | 0.06 | 15.13 | 0.01 | 2.226 | 8.06 | 10.74 | 6.7 | 93.1 | 0.2 | -2.97 | 0.79 | 0.72 | — | 4.2 | 0.003 | 0.69 | 0.0 | 0.05 | 14.86 | 0.00 | 2.129 | 13.02 | 0.29 | 6.9 | 93.0 | 0.1 | -1.16 | 1.70 | 0.86 | 0.86 | — | 36498 | 4470 | 69 | 0 | 144 | 0 | 0 | logfile |
✔ | 6QXM | 4669 | 2022-12-19 | 2019-03-07 | 4.1 | 2.35 | — | 3.5 | 0.008 | 1.25 | 0.0 | 0.06 | 18.91 | 0.01 | 2.333 | 6.84 | 8.63 | 9.3 | 90.7 | 0.0 | -4.78 | 0.68 | 0.67 | — | 2.5 | 0.003 | 0.69 | 0.0 | 0.04 | 15.70 | 0.00 | 2.096 | 11.00 | 0.10 | 5.4 | 94.6 | 0.0 | -1.31 | 1.63 | 0.66 | 0.65 | — | 37164 | 4704 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 5YKG | 6833 | 2022-12-22 | 2017-10-14 | 4.57 | 4.68 | 4.39 | 4.4 | 0.005 | 0.71 | 4.0 | 0.04 | 13.41 | 0.01 | 2.245 | 13.43 | 7.90 | 4.2 | 95.6 | 0.1 | -2.42 | 0.73 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 50868 | 6536 | 16 | 0 | 12 | 0 | 0 | logfile |
✘ | 6KMW | 0726 | 2022-12-19 | 2019-08-01 | 2.35 | 2.41 | — | 2.4 | 0.026 | 2.51 | 0.0 | 0.08 | 20.93 | 0.03 | 1.212 | 6.39 | 3.70 | 4.3 | 95.6 | 0.1 | -4.06 | 0.77 | 0.85 | 4.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64083 | 5739 | 63 | 0 | 366 | 627 | 0 | logfile |
✔ | 5N8N | 3600 | 2022-12-14 | 2017-02-23 | 3.28 | 3.38 | — | 3.4 | 0.019 | 1.34 | 0.0 | 0.12 | 11.08 | 0.01 | 1.755 | 21.65 | 0.81 | 4.4 | 95.6 | 0.0 | -2.91 | 0.40 | 0.82 | 2.76 | 3.4 | 0.004 | 0.69 | 0.0 | 0.04 | 15.70 | 0.00 | 2.089 | 11.36 | 0.59 | 6.5 | 92.9 | 0.5 | -0.24 | 1.47 | 0.42 | 0.85 | 2.47 | 70035 | 8895 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SXA | 10337 | 2022-12-11 | 2019-09-25 | 3.6 | 5.82 | 4.21 | 4.6 | 0.010 | 1.37 | 5.0 | 0.09 | 15.20 | 0.01 | 2.245 | 15.33 | 3.18 | 10.9 | 88.9 | 0.2 | -4.66 | 0.83 | 0.67 | -0.05 | 4.6 | 0.003 | 0.83 | 0.0 | 0.04 | 15.14 | 0.00 | 2.260 | 11.53 | 0.14 | 6.2 | 93.7 | 0.1 | -0.26 | 1.73 | 0.91 | 0.85 | 0.41 | 7014 | 943 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6P9X | 20277 | 2022-12-11 | 2019-06-10 | 2.91 | 3.05 | 2.91 | 3.1 | 0.004 | 0.57 | 0.0 | 0.04 | 12.46 | 0.00 | 2.211 | 5.77 | 0.23 | 2.1 | 97.9 | 0.0 | -3.97 | 0.64 | 0.82 | 4.18 | 3.1 | 0.002 | 0.55 | 0.0 | 0.04 | 15.58 | 0.00 | 2.223 | 7.50 | 1.94 | 2.7 | 97.3 | 0.0 | 0.74 | 0.47 | 0.66 | 0.84 | 3.28 | 8177 | 1015 | 9 | 0 | 0 | 17 | 0 | logfile |