Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5M32	4146	2022-12-15	2016-10-14	3.8	3.96	—	3.8	0.009	1.47	12.0	0.07	13.19	0.01	0.185	19.68	3.10	14.4	83.9	1.7	-5.42	0.81	0.79	1.92	3.8	0.004	0.83	0.0	0.05	14.78	0.00	1.713	15.31	0.49	11.4	88.3	0.3	-1.89	1.49	0.83	0.81	1.30	76085	10500	52	0	8	0	0	logfile
✔	6HV8	0287	2022-12-12	2018-10-10	4.4	4.51	—	4.4	0.009	1.62	2.0	0.08	10.20	0.01	1.472	9.02	1.31	22.1	77.3	0.6	-4.84	0.74	0.72	—	4.4	0.003	0.86	0.0	0.05	12.68	0.00	2.153	15.07	0.00	13.6	86.4	0.0	-2.57	1.05	0.74	0.71	—	9206	1184	2	0	2	0	0	logfile
✔	6KXS	0782	2022-12-14	2019-09-12	3.4	3.50	—	3.4	0.018	1.44	0.0	0.09	15.88	0.01	2.157	9.02	3.30	15.2	84.4	0.4	-4.73	0.70	0.72	2.54	3.4	0.003	0.69	0.0	0.05	16.61	0.00	2.148	11.56	0.51	8.8	91.2	0.0	-2.11	0.56	0.71	0.75	2.08	22499	2869	23	0	12	0	0	logfile
✔	6U2K	20621	2022-12-11	2019-08-20	2.93	3.31	3.29	3.3	0.010	0.98	0.0	0.06	10.03	0.01	2.354	3.34	0.19	9.7	90.3	0.0	-4.70	0.70	0.83	4.65	3.3	0.004	0.70	0.0	0.04	15.05	0.00	2.275	6.57	2.12	8.2	91.8	0.0	-2.00	1.20	0.65	0.81	2.97	4719	604	3	0	4	0	0	logfile
✔	6SB3	10134	2022-12-15	2019-07-18	3.5	3.63	3.51	3.7	0.002	0.56	0.0	0.04	12.95	0.00	2.104	13.36	0.00	4.9	95.1	0.0	-2.84	0.68	0.71	1.27	3.7	0.005	0.71	0.0	0.05	16.11	0.01	2.025	19.45	0.76	8.0	92.0	0.0	-1.75	1.63	0.71	0.77	0.99	75712	9664	32	0	32	0	0	logfile
✔	6EZM	4160	2022-12-20	2017-11-15	3.2	3.09	—	3.1	0.010	1.28	0.0	0.06	10.27	0.01	1.913	8.89	0.10	10.0	90.0	0.0	-4.97	0.79	0.82	4.74	3.1	0.004	0.69	0.0	0.05	15.82	0.01	2.051	10.65	0.23	8.3	91.7	0.0	-1.00	1.99	0.81	0.86	3.43	38400	5088	38	0	72	0	0	logfile
✘	6G2H	4343	2022-12-19	2018-03-23	4.6	4.69	—	4.5	0.013	1.94	46.0	0.11	13.54	0.01	1.921	14.14	2.29	8.3	91.0	0.7	-3.04	0.79	0.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	103896	6454	6	0	0	0	51852	logfile
✘	6UUZ	20903	2022-12-18	2019-11-01	3.0	3.14	—	3.1	0.007	1.03	0.0	0.06	13.18	0.01	1.219	8.06	1.45	5.6	94.2	0.2	-4.07	0.62	0.65	3.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31818	4084	10	0	4	2	0	logfile
✔	6MPH	9189	2022-12-16	2018-10-06	3.8	4.28	—	3.9	0.006	0.79	0.0	0.05	12.56	0.01	2.286	6.16	6.01	5.3	94.6	0.2	-3.46	0.84	0.85	2.34	3.9	0.003	0.70	0.0	0.04	14.24	0.00	2.068	13.92	0.33	5.2	94.8	0.0	-1.06	0.76	0.84	0.85	2.02	32092	3843	72	0	155	0	0	logfile
✔	6iZR	9757	2022-12-16	2018-12-20	4.7	4.86	—	4.7	0.004	0.90	0.0	0.05	11.50	0.01	2.086	6.64	0.26	6.9	93.1	0.0	-4.07	0.68	0.78	—	4.7	0.004	0.86	0.0	0.05	12.98	0.00	2.077	22.21	0.00	6.6	93.4	0.0	-0.51	2.07	0.66	0.71	—	84360	10470	60	0	60	0	0	logfile
✔	6MWQ	9277	2022-12-14	2018-10-30	3.0	3.33	2.89	3.1	0.001	0.36	0.0	0.04	4.66	0.00	2.321	4.19	0.13	11.0	87.5	1.5	-4.81	0.54	0.39	0.22	3.1	0.003	0.70	0.0	0.04	13.25	0.00	2.183	8.34	1.48	3.6	96.1	0.2	-1.09	1.31	0.77	0.86	1.70	22072	2873	8	0	0	0	0	logfile
✘	6JSi	9882	2022-12-19	2019-04-08	4.7	4.70	—	4.6	0.007	1.48	0.0	0.06	15.33	0.01	2.231	10.68	2.42	23.2	72.3	4.5	-6.05	0.64	0.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62820	5844	9	0	4044	0	0	logfile
✔	6XWQ	10635	2022-12-12	2020-01-24	3.41	4.27	—	4.0	0.003	0.61	0.0	0.04	13.42	0.00	2.171	10.53	0.00	3.5	96.2	0.2	-2.80	0.73	0.80	0.22	4.0	0.003	0.78	0.0	0.04	15.52	0.00	2.168	13.94	0.20	4.0	96.0	0.0	1.04	1.17	0.72	0.84	0.66	9572	1281	6	0	0	0	0	logfile
✔	6N1V	9319	2022-12-19	2018-11-12	4.0	4.63	—	4.2	0.008	0.96	0.0	0.06	15.13	0.01	2.226	8.06	10.74	6.7	93.1	0.2	-2.97	0.79	0.72	—	4.2	0.003	0.69	0.0	0.05	14.86	0.00	2.129	13.02	0.29	6.9	93.0	0.1	-1.16	1.70	0.86	0.86	—	36498	4470	69	0	144	0	0	logfile
✔	6QXM	4669	2022-12-19	2019-03-07	4.1	2.35	—	3.5	0.008	1.25	0.0	0.06	18.91	0.01	2.333	6.84	8.63	9.3	90.7	0.0	-4.78	0.68	0.67	—	2.5	0.003	0.69	0.0	0.04	15.70	0.00	2.096	11.00	0.10	5.4	94.6	0.0	-1.31	1.63	0.66	0.65	—	37164	4704	12	0	0	0	0	logfile
✘	5YKG	6833	2022-12-22	2017-10-14	4.57	4.68	4.39	4.4	0.005	0.71	4.0	0.04	13.41	0.01	2.245	13.43	7.90	4.2	95.6	0.1	-2.42	0.73	0.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	50868	6536	16	0	12	0	0	logfile
✘	6KMW	0726	2022-12-19	2019-08-01	2.35	2.41	—	2.4	0.026	2.51	0.0	0.08	20.93	0.03	1.212	6.39	3.70	4.3	95.6	0.1	-4.06	0.77	0.85	4.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64083	5739	63	0	366	627	0	logfile
✔	5N8N	3600	2022-12-14	2017-02-23	3.28	3.38	—	3.4	0.019	1.34	0.0	0.12	11.08	0.01	1.755	21.65	0.81	4.4	95.6	0.0	-2.91	0.40	0.82	2.76	3.4	0.004	0.69	0.0	0.04	15.70	0.00	2.089	11.36	0.59	6.5	92.9	0.5	-0.24	1.47	0.42	0.85	2.47	70035	8895	30	0	0	0	0	logfile
✔	6SXA	10337	2022-12-11	2019-09-25	3.6	5.82	4.21	4.6	0.010	1.37	5.0	0.09	15.20	0.01	2.245	15.33	3.18	10.9	88.9	0.2	-4.66	0.83	0.67	-0.05	4.6	0.003	0.83	0.0	0.04	15.14	0.00	2.260	11.53	0.14	6.2	93.7	0.1	-0.26	1.73	0.91	0.85	0.41	7014	943	2	0	0	0	0	logfile
✔	6P9X	20277	2022-12-11	2019-06-10	2.91	3.05	2.91	3.1	0.004	0.57	0.0	0.04	12.46	0.00	2.211	5.77	0.23	2.1	97.9	0.0	-3.97	0.64	0.82	4.18	3.1	0.002	0.55	0.0	0.04	15.58	0.00	2.223	7.50	1.94	2.7	97.3	0.0	0.74	0.47	0.66	0.84	3.28	8177	1015	9	0	0	17	0	logfile

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