Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7D06	30525	2022-05-14	2020-09-09	3.1	3.23	—	3.2	0.012	1.54	0.0	0.06	19.08	0.02	2.021	10.56	4.91	10.4	88.6	1.0	-5.86	0.75	0.85	3.10	3.2	0.003	0.68	0.0	0.04	17.57	0.00	2.097	7.76	0.59	8.6	91.3	0.1	-0.67	0.60	0.77	0.87	2.06	18328	2374	15	0	12	0	0	logfile
✔	7D08	30526	2022-05-14	2020-09-09	4.0	4.11	—	4.0	0.008	1.25	2.0	0.06	17.83	0.01	1.987	24.08	9.39	11.1	87.3	1.6	-5.80	0.77	0.80	—	4.0	0.005	0.83	0.0	0.04	16.75	0.00	2.108	13.79	0.59	9.4	90.6	0.0	-2.19	0.82	0.77	0.80	—	17802	2374	14	0	2	0	0	logfile
✔	6LZ0	30020	2022-05-12	2020-02-16	3.3	4.24	—	4.2	0.008	1.17	10.0	0.09	15.05	0.01	2.126	17.56	5.25	11.1	88.7	0.2	-4.02	0.46	0.61	1.68	4.2	0.003	0.79	0.0	0.04	16.17	0.01	2.163	9.24	0.31	6.2	93.8	0.0	-0.24	1.27	0.41	0.67	1.61	4006	591	3	0	1	0	0	logfile
✔	7D09	30527	2022-05-14	2020-09-09	3.6	3.73	—	3.7	0.007	1.11	0.0	0.06	16.97	0.01	2.181	15.50	8.59	9.3	89.5	1.2	-6.00	0.72	0.81	2.38	3.7	0.005	0.90	0.0	0.04	16.42	0.00	2.120	7.33	0.43	6.3	93.7	0.0	-2.06	1.30	0.72	0.83	1.87	17802	2374	14	0	2	0	0	logfile
✔	6VEF	21156	2022-05-13	2019-12-31	4.08	4.14	—	4.1	0.009	1.19	0.0	0.07	11.76	0.01	1.866	12.30	0.00	10.4	89.5	0.1	-4.48	0.77	0.80	—	4.1	0.004	0.76	0.0	0.05	13.29	0.00	2.097	18.41	0.00	9.9	90.1	0.0	-2.02	1.05	0.77	0.80	—	13414	1688	4	0	4	0	0	logfile
✔	7D68	30590	2022-05-12	2020-09-29	3.0	3.24	—	3.3	0.004	0.66	0.0	0.05	13.07	0.00	2.121	8.22	0.76	4.8	95.1	0.1	-2.09	0.62	0.77	3.53	3.2	0.003	0.58	0.0	0.04	16.05	0.00	2.103	7.98	2.48	3.8	96.2	0.0	0.36	0.52	0.62	0.78	2.73	8564	1070	8	0	0	7	0	logfile
✔	7JVP	22509	2022-05-12	2020-08-22	2.9	3.02	—	3.0	0.005	0.97	0.0	0.07	8.77	0.01	2.208	6.09	0.00	1.3	98.7	0.0	2.55	0.62	0.76	2.94	3.0	0.003	0.57	0.0	0.04	15.51	0.01	2.142	11.13	2.35	2.3	97.7	0.0	0.96	0.82	0.65	0.83	2.90	8486	1041	6	0	12	0	0	logfile
✔	6VYH	21460	2022-05-12	2020-02-26	3.0	3.13	—	3.1	0.013	1.13	1.0	0.07	14.40	0.01	1.922	11.25	2.00	9.3	89.4	1.3	-4.58	0.66	0.81	2.78	3.1	0.014	1.48	1.0	0.04	16.59	0.01	1.983	9.10	3.81	5.4	94.0	0.6	-0.86	0.56	0.65	0.82	2.59	6092	860	5	0	2	1	0	logfile
✔	6Z0U	11023	2022-05-16	2020-05-11	2.9	2.99	—	2.9	0.007	0.73	0.0	0.05	13.19	0.01	2.040	10.20	0.52	6.5	93.5	0.0	-3.59	0.78	0.89	4.49	2.9	0.003	0.60	0.0	0.04	15.05	0.00	2.090	8.80	0.58	4.1	95.9	0.0	-0.06	0.38	0.75	0.87	3.60	87288	10896	72	0	24	1392	0	logfile
✔	7D0A	30528	2022-05-14	2020-09-09	4.0	4.18	—	4.0	0.021	1.53	0.0	0.15	17.85	0.01	2.101	29.59	9.93	11.4	87.2	1.4	-5.59	0.74	0.78	—	4.0	0.003	0.81	0.0	0.04	17.12	0.00	2.096	13.37	0.32	8.7	91.2	0.1	-2.26	1.36	0.74	0.78	—	17804	2374	14	0	4	0	0	logfile
✔	7CWo	30485	2022-05-12	2020-08-29	3.9	4.25	—	4.1	0.007	1.04	0.0	0.06	9.37	0.01	2.262	9.56	0.28	8.4	91.6	0.0	-3.72	0.58	0.74	2.31	4.1	0.007	0.94	0.0	0.05	14.05	0.01	2.145	16.93	0.57	6.2	93.8	0.0	-2.40	1.73	0.58	0.74	1.45	3254	422	3	0	0	0	0	logfile
✔	6ZKJ	11251	2022-05-14	2020-06-30	3.0	3.10	—	3.0	0.007	0.99	0.0	1.03	11.65	0.01	2.263	5.52	0.07	3.7	96.3	0.0	-2.95	0.73	0.85	4.05	3.0	0.011	1.66	2.0	0.31	16.30	0.01	1.536	14.13	1.39	2.9	97.0	0.0	0.30	1.64	0.73	0.87	3.19	67479	8163	71	0	46	0	0	logfile
✔	6ZKF	11247	2022-05-14	2020-06-30	2.8	2.93	—	2.9	0.008	1.02	0.0	1.03	11.68	0.01	2.232	5.26	0.06	3.4	96.6	0.0	-2.83	0.73	0.86	4.28	2.9	0.009	1.60	0.0	0.31	16.22	0.00	2.054	11.27	1.78	3.1	96.9	0.0	0.69	1.62	0.73	0.87	3.55	67440	8158	69	0	46	0	0	logfile
✔	6M49	30074	2022-05-12	2020-03-06	3.7	4.45	—	4.4	0.008	0.85	0.0	0.05	14.32	0.01	2.079	14.80	0.98	7.1	92.6	0.2	-4.00	0.46	0.70	1.15	4.4	0.003	0.84	0.0	0.04	16.65	0.00	2.231	9.59	0.66	3.2	96.8	0.0	1.83	3.60	0.48	0.73	1.18	3098	420	3	0	1	0	0	logfile
✔	6LYY	30019	2022-05-12	2020-02-16	3.2	3.40	—	3.9	0.010	1.16	9.0	0.10	13.41	0.01	2.152	14.72	0.90	8.3	91.7	0.0	-3.75	0.38	0.51	1.45	3.7	0.005	0.79	0.0	0.04	15.60	0.01	2.241	11.36	0.90	5.1	94.9	0.0	-0.20	1.65	0.47	0.67	1.88	4104	597	3	0	1	0	0	logfile
✔	6ZKM	11254	2022-05-13	2020-06-30	2.8	2.40	—	2.6	0.008	1.04	0.0	1.04	11.46	0.01	2.229	5.19	0.10	3.5	96.5	0.0	-2.74	0.65	0.82	4.06	2.7	0.011	1.67	1.0	0.31	16.53	0.00	2.037	12.26	2.01	3.0	97.0	0.0	0.47	1.25	0.66	0.84	3.25	65955	8002	67	0	41	0	0	logfile
✔	6ZKN	11255	2022-05-14	2020-06-30	2.9	2.40	—	2.6	0.008	1.04	0.0	1.04	11.46	0.01	2.229	5.19	0.10	3.5	96.5	0.0	-2.74	0.65	0.82	4.06	2.7	0.011	1.67	1.0	0.31	16.53	0.00	2.037	12.26	2.01	3.0	97.0	0.0	0.47	1.25	0.66	0.84	3.25	65955	8002	67	0	41	0	0	logfile
✔	6ZKU	11262	2022-05-13	2020-06-30	3.0	2.73	—	2.9	0.009	1.03	0.0	1.04	11.53	0.01	2.218	5.07	0.06	4.1	95.9	0.0	-2.98	0.62	0.82	3.82	2.9	0.009	1.67	0.0	0.32	16.49	0.01	1.740	14.34	1.81	4.0	96.0	0.0	0.09	0.66	0.63	0.83	3.17	65505	7966	69	0	36	0	0	logfile
✔	6ZKV	11263	2022-05-13	2020-06-30	2.9	2.66	—	2.9	0.007	0.97	0.0	1.04	11.34	0.01	2.225	5.11	0.06	3.6	96.4	0.0	-2.96	0.59	0.80	3.53	2.9	0.009	1.66	0.0	0.32	16.60	0.01	1.908	15.10	1.74	4.0	96.0	0.0	0.09	1.25	0.61	0.82	2.85	65224	7932	66	0	36	0	0	logfile
✔	7KAP	22779	2022-05-13	2020-10-01	4.1	4.58	4.09	4.2	0.003	0.55	0.0	0.04	11.24	0.00	2.205	8.05	0.00	2.3	97.7	0.0	-1.05	0.62	0.83	—	4.2	0.003	0.60	0.0	0.04	12.21	0.00	2.211	8.74	0.00	2.9	97.1	0.0	2.06	0.62	0.63	0.85	—	10715	1342	7	0	56	0	0	logfile

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