Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7X96	33068	2023-04-20	2022-03-15	3.4	4.29	3.35	4.0	0.003	0.61	0.0	0.04	13.89	0.00	2.101	5.71	0.00	8.8	91.2	0.0	-1.35	0.74	0.82	3.22	4.0	0.002	0.52	0.0	0.04	14.86	0.00	2.067	8.42	0.27	8.6	91.4	0.0	-0.82	4.17	0.73	0.81	3.57	6586	427	4	0	6	0	3184	logfile
✔	7P91	13257	2023-04-25	2021-07-23	2.8	2.26	2.71	2.4	0.003	0.52	0.0	0.04	14.73	0.00	2.062	5.47	0.13	3.6	96.4	0.0	0.31	0.68	0.80	3.48	2.4	0.004	0.60	0.0	0.04	17.51	0.01	2.046	7.51	1.80	4.0	96.0	0.0	0.08	0.40	0.69	0.84	3.37	21419	2681	18	0	23	346	0	logfile
✔	7YES	33776	2023-04-23	2022-07-06	3.4	3.49	—	3.4	0.002	0.53	0.0	0.04	14.11	0.00	2.209	4.52	0.18	6.8	92.6	0.6	0.91	0.80	0.86	2.46	3.4	0.004	0.57	0.0	0.04	15.80	0.00	2.183	5.41	0.25	7.0	92.3	0.6	0.93	0.89	0.82	0.87	2.53	14679	1863	6	0	1	0	0	logfile
✔	7WED	32447	2023-04-20	2021-12-23	3.5	3.62	—	3.7	0.003	0.70	0.0	0.05	13.75	0.01	2.285	7.13	0.00	8.2	91.8	0.0	-1.64	0.57	0.77	2.25	3.6	0.004	0.69	0.0	0.04	16.64	0.00	2.248	7.29	0.54	9.2	90.8	0.0	-1.26	1.14	0.57	0.79	1.83	3358	431	3	0	0	0	0	logfile
✔	6CAJ	7442	2023-04-27	2018-01-31	2.8	2.84	—	4.2	0.008	0.88	0.0	0.17	9.84	0.01	1.467	5.88	0.24	4.5	95.5	0.0	-3.63	0.33	0.15	2.28	2.9	0.004	0.69	0.0	0.04	16.38	0.00	2.142	11.46	2.76	5.1	94.9	0.0	-0.19	1.21	0.75	0.85	2.84	24295	3210	11	0	1	0	0	logfile
✔	7TNM	26014	2023-04-25	2022-01-21	4.74	3.56	—	3.5	0.007	1.08	0.0	0.06	11.18	0.01	2.214	5.88	0.86	2.6	97.0	0.5	-1.48	0.68	0.68	—	3.5	0.003	0.67	0.0	0.04	12.90	0.00	2.053	14.26	0.00	5.0	95.0	0.0	0.42	1.82	0.69	0.69	—	19448	2486	8	0	4	0	0	logfile
✔	7Z7X	14539	2023-04-28	2022-03-16	3.3	3.02	3.24	3.2	0.006	0.72	0.0	0.05	13.34	0.00	2.149	8.13	0.11	4.3	95.7	0.0	-0.13	0.73	0.82	2.95	3.2	0.004	0.57	0.0	0.04	14.75	0.00	2.169	7.72	0.39	4.2	95.8	0.0	0.24	0.34	0.74	0.84	2.58	26906	3353	29	0	66	0	0	logfile
✔	7PKB	13467	2023-04-23	2021-08-25	3.2	2.68	3.08	3.1	0.008	0.90	0.0	0.14	13.28	0.01	1.950	3.97	0.00	5.1	94.8	0.1	-0.98	0.72	0.85	5.32	3.2	0.003	0.70	0.0	0.14	13.54	0.00	2.127	2.91	0.00	3.4	96.6	0.0	-0.34	0.58	0.73	0.87	4.70	16145	1030	15	0	10	5	7970	logfile
✔	6N06	9311	2023-04-28	2018-11-06	3.4	3.49	—	3.5	0.005	0.74	0.0	0.05	8.24	0.01	2.241	7.19	0.04	1.9	98.1	0.0	-4.01	0.76	0.86	3.99	3.4	0.004	0.64	0.0	0.05	14.50	0.00	2.174	11.17	0.44	1.9	98.1	0.0	-0.01	1.61	0.77	0.88	3.23	28197	3915	39	0	0	0	0	logfile
✘	6K15	9905	2023-04-25	2019-05-09	3.4	3.68	—	3.6	0.005	0.96	0.0	0.05	10.23	0.01	1.639	5.00	0.33	8.6	91.3	0.1	-4.21	0.74	0.78	2.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21486	2655	14	0	1	0	0	logfile
✔	6N28	9326	2023-04-23	2018-11-12	2.9	3.06	—	3.1	0.006	0.78	0.0	0.05	9.54	0.01	2.215	3.56	0.00	2.4	97.6	0.0	-3.44	0.75	0.87	3.66	3.1	0.004	0.54	0.0	0.04	13.76	0.00	2.201	6.43	1.65	2.4	97.6	0.0	1.40	1.97	0.77	0.90	2.98	13885	1690	10	0	5	0	0	logfile
✔	6LLE	0912	2023-04-20	2019-12-23	2.9	3.06	2.85	3.0	0.005	0.63	0.0	0.04	12.59	0.00	2.050	6.54	0.00	2.7	97.3	0.0	-1.87	0.67	0.82	3.28	3.0	0.002	0.56	0.0	0.04	16.67	0.00	2.092	7.67	1.95	2.1	97.9	0.0	0.63	0.45	0.68	0.84	2.79	7916	1020	1	0	4	0	0	logfile
✔	7RYZ	24749	2023-04-23	2021-08-26	4.15	3.50	—	3.4	0.008	0.95	0.0	0.05	10.77	0.01	2.225	4.30	0.24	3.4	96.6	0.0	-4.55	0.73	0.77	—	3.4	0.003	0.63	0.0	0.04	12.87	0.00	2.101	10.82	0.00	2.9	97.1	0.0	0.12	1.91	0.74	0.77	—	15742	2014	8	0	4	0	0	logfile
✔	7BSQ	30164	2023-04-22	2020-03-31	3.2	3.30	—	3.3	0.014	1.30	2.0	0.06	16.75	0.01	1.841	35.93	6.31	15.9	84.0	0.1	-5.29	0.64	0.86	3.13	3.3	0.003	0.87	0.0	0.04	16.97	0.00	2.012	10.55	0.33	6.0	94.0	0.0	-1.11	0.51	0.66	0.87	2.55	11024	1352	5	0	9	0	0	logfile
✔	7PDH	13338	2023-04-20	2021-08-05	4.0	3.51	—	3.2	0.003	0.70	0.0	0.04	14.16	0.00	2.169	14.32	0.00	5.8	94.2	0.0	-1.07	0.79	0.69	—	3.2	0.003	0.70	0.0	0.04	16.46	0.00	2.175	14.77	0.62	6.3	93.7	0.0	-0.65	0.53	0.79	0.70	—	4516	577	2	0	0	0	0	logfile
✘	6RX4	10049	2023-04-20	2019-06-07	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7347	884	8	0	31	7	0	logfile
✔	7UGP	26493	2023-04-27	2022-03-25	4.2	3.87	4.16	3.5	0.006	1.00	1.0	0.07	13.73	0.01	0.835	6.55	0.52	6.7	93.3	0.0	-4.45	0.81	0.72	—	3.5	0.004	0.76	0.0	0.05	13.41	0.00	2.113	13.60	0.04	7.8	92.2	0.0	-2.46	2.10	0.85	0.78	—	25047	3096	34	0	66	0	0	logfile
✘	6S5T	10100	2023-04-20	2019-07-02	4.15	4.28	4.17	4.2	0.007	1.48	3.0	0.09	17.31	0.00	2.450	5.08	3.93	7.1	92.4	0.6	-4.05	0.75	0.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6958	896	3	0	1	0	0	logfile
✔	7KF6	22844	2023-04-26	2020-10-13	3.4	3.42	—	3.4	0.003	0.53	0.0	0.05	12.63	0.00	1.809	7.77	0.00	5.6	94.4	0.0	-3.26	0.68	0.68	1.06	3.4	0.004	0.65	0.0	0.06	15.79	0.00	2.003	12.58	0.52	7.0	92.9	0.0	-0.89	1.09	0.72	0.78	1.23	47598	3045	6	0	3	0	24189	logfile
✘	7QDS	13925	2023-04-23	2021-11-30	3.8	3.53	3.57	3.7	0.005	0.86	1.0	0.05	14.59	0.01	2.067	14.28	0.00	5.7	94.3	0.0	-0.33	0.80	0.82	1.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13798	1771	4	0	0	0	0	logfile

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