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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7CH6 | 30369 | 2023-09-29 | 2020-07-05 | 3.4 | 3.53 | — | 3.5 | 0.008 | 0.82 | 0.0 | 0.13 | 15.18 | 0.01 | 2.077 | 17.44 | 12.88 | 9.6 | 90.4 | 0.0 | -4.53 | 0.71 | 0.84 | 2.62 | 3.5 | 0.005 | 0.79 | 0.0 | 0.05 | 15.88 | 0.01 | 2.130 | 16.17 | 0.20 | 6.0 | 94.0 | 0.0 | -1.85 | 1.25 | 0.70 | 0.84 | 1.85 | 9260 | 1214 | 8 | 0 | 2 | 0 | 0 | logfile |
✔ | 6W8o | 21576 | 2023-09-28 | 2020-03-20 | 3.4 | 4.30 | — | 4.1 | 0.029 | 1.20 | 3.0 | 0.05 | 17.62 | 0.01 | 1.161 | 20.04 | 11.79 | 6.7 | 93.3 | 0.0 | -3.22 | 0.57 | 0.81 | 1.49 | 4.1 | 0.005 | 0.97 | 0.0 | 0.05 | 17.25 | 0.00 | 2.031 | 19.32 | 0.75 | 6.9 | 93.1 | 0.0 | -0.03 | 1.18 | 0.55 | 0.78 | 1.50 | 6332 | 832 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 6oUA | 20200 | 2023-09-28 | 2019-05-04 | 4.18 | 4.32 | — | 4.3 | 0.008 | 1.37 | 1.0 | 0.07 | 13.97 | 0.01 | 2.294 | 7.03 | 2.35 | 17.4 | 82.3 | 0.3 | -5.89 | 0.72 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5208 | 637 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XLD | 22240 | 2023-09-30 | 2020-06-28 | 3.66 | 3.78 | — | 3.7 | 0.003 | 0.51 | 0.0 | 0.04 | 9.94 | 0.00 | 2.061 | 5.73 | 0.58 | 1.5 | 98.5 | 0.0 | -3.76 | 0.77 | 0.75 | 1.85 | 3.7 | 0.003 | 0.63 | 0.0 | 0.04 | 14.73 | 0.00 | 1.891 | 11.72 | 0.50 | 3.5 | 96.5 | 0.0 | -0.41 | 1.41 | 0.80 | 0.81 | 2.54 | 10992 | 1349 | 5 | 0 | 4 | 0 | 0 | logfile |
✔ | 7XK8 | 33247 | 2023-09-28 | 2022-04-19 | 3.3 | 3.49 | 3.12 | 3.4 | 0.003 | 0.48 | 0.0 | 0.04 | 11.62 | 0.00 | 2.248 | 7.78 | 0.00 | 3.1 | 96.9 | 0.0 | -1.25 | 0.55 | 0.65 | 0.38 | 3.5 | 0.006 | 0.74 | 0.0 | 0.05 | 14.76 | 0.00 | 2.041 | 16.39 | 1.34 | 4.6 | 95.4 | 0.0 | 0.19 | 0.68 | 0.59 | 0.73 | 0.65 | 6796 | 923 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 7YJ4 | 33871 | 2023-09-29 | 2022-07-19 | 3.19 | 3.39 | 3.21 | 3.4 | 0.004 | 0.67 | 0.0 | 0.05 | 14.73 | 0.01 | 2.175 | 9.63 | 1.55 | 5.5 | 94.4 | 0.1 | -0.72 | 0.60 | 0.73 | 1.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8985 | 1154 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WX3 | 32875 | 2023-09-29 | 2022-02-14 | 3.1 | 3.61 | 3.03 | 3.5 | 0.011 | 0.91 | 0.0 | 0.05 | 16.74 | 0.00 | 2.150 | 6.65 | 3.70 | 4.6 | 95.4 | 0.0 | -3.51 | 0.57 | 0.78 | 1.78 | 3.5 | 0.003 | 0.63 | 0.0 | 0.04 | 16.88 | 0.00 | 2.057 | 6.23 | 0.11 | 1.6 | 98.4 | 0.0 | -0.39 | 1.57 | 0.56 | 0.77 | 0.98 | 8472 | 1086 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 8B8J | 15914 | 2023-09-30 | 2022-10-04 | 2.96 | 3.60 | 2.92 | 3.4 | 0.003 | 0.46 | 0.0 | 0.04 | 9.83 | 0.00 | 2.211 | 6.94 | 1.25 | 2.4 | 97.6 | 0.0 | 2.21 | 0.60 | 0.76 | 1.84 | 3.4 | 0.003 | 0.67 | 0.0 | 0.04 | 13.51 | 0.00 | 2.161 | 10.37 | 2.59 | 2.5 | 97.5 | 0.0 | 1.75 | 1.48 | 0.63 | 0.80 | 2.24 | 11686 | 1418 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 8HND | 34911 | 2023-09-27 | 2022-12-07 | 3.19 | 3.62 | 3.32 | 3.6 | 0.008 | 1.22 | 4.0 | 0.07 | 12.21 | 0.02 | 2.231 | 14.77 | 0.65 | 4.5 | 95.5 | 0.0 | -2.74 | 0.50 | 0.73 | 2.07 | 3.6 | 0.004 | 0.63 | 0.0 | 0.04 | 14.97 | 0.00 | 2.206 | 7.90 | 0.00 | 3.6 | 96.4 | 0.0 | 1.02 | 1.07 | 0.44 | 0.69 | 1.97 | 4370 | 560 | 3 | 0 | 4 | 0 | 0 | logfile |
✔ | 7F1R | 31423 | 2023-09-28 | 2021-06-09 | 3.0 | 3.21 | — | 3.2 | 0.002 | 0.48 | 0.0 | 0.04 | 11.21 | 0.00 | 2.224 | 8.07 | 0.46 | 1.5 | 98.5 | 0.0 | -2.21 | 0.59 | 0.70 | 1.80 | 3.2 | 0.004 | 0.71 | 0.0 | 0.04 | 15.11 | 0.00 | 2.161 | 13.28 | 3.82 | 3.9 | 96.1 | 0.0 | 0.37 | 1.26 | 0.63 | 0.80 | 2.53 | 6621 | 894 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K18 | 22621 | 2023-09-29 | 2020-09-07 | 3.3 | 3.43 | — | 3.4 | 0.006 | 1.09 | 1.0 | 0.05 | 18.25 | 0.01 | 1.936 | 21.56 | 3.41 | 7.9 | 91.8 | 0.3 | -3.42 | 0.53 | 0.72 | 1.76 | 3.4 | 0.004 | 0.78 | 0.0 | 0.04 | 17.71 | 0.00 | 2.082 | 13.83 | 0.30 | 6.9 | 93.1 | 0.1 | -0.22 | 0.67 | 0.52 | 0.75 | 1.49 | 9749 | 1195 | 6 | 0 | 19 | 0 | 0 | logfile |
✔ | 6Li3 | 0902 | 2023-09-28 | 2019-12-10 | 3.32 | 3.48 | — | 3.8 | 0.002 | 0.56 | 0.0 | 0.04 | 13.86 | 0.00 | 2.124 | 7.66 | 0.00 | 2.4 | 97.6 | 0.0 | -2.69 | 0.55 | 0.68 | 0.78 | 3.6 | 0.003 | 0.65 | 0.0 | 0.04 | 16.65 | 0.00 | 2.150 | 9.72 | 0.33 | 3.8 | 96.2 | 0.0 | -0.12 | 1.35 | 0.59 | 0.77 | 1.61 | 8289 | 1045 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YDQ | 33756 | 2023-09-28 | 2022-07-04 | 4.04 | 4.32 | 4.02 | 4.4 | 0.011 | 0.82 | 0.0 | 0.04 | 17.28 | 0.01 | 2.262 | 10.34 | 0.57 | 3.2 | 96.8 | 0.0 | 1.21 | 0.46 | 0.63 | — | 4.4 | 0.003 | 0.72 | 0.0 | 0.04 | 14.00 | 0.00 | 2.257 | 10.03 | 0.19 | 3.6 | 96.4 | 0.0 | 0.89 | 0.55 | 0.55 | 0.69 | — | 4778 | 598 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 5oYG | 3861 | 2023-09-30 | 2017-09-08 | 4.06 | 4.29 | 4.02 | 4.1 | 0.007 | 1.27 | 10.0 | 0.10 | 12.53 | 0.01 | 2.282 | 5.95 | 1.98 | 6.9 | 93.1 | 0.0 | -3.35 | 0.68 | 0.83 | — | 4.1 | 0.004 | 0.73 | 0.0 | 0.04 | 12.60 | 0.00 | 2.130 | 11.47 | 0.00 | 6.0 | 94.0 | 0.0 | 0.56 | 0.84 | 0.68 | 0.82 | — | 11596 | 1418 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WLL | 32587 | 2023-09-29 | 2022-01-13 | 3.6 | 3.89 | — | 3.8 | 0.012 | 1.19 | 2.0 | 0.08 | 15.09 | 0.00 | 2.026 | 13.97 | 0.50 | 7.3 | 92.6 | 0.1 | -0.42 | 0.60 | 0.81 | 1.99 | 3.9 | 0.003 | 0.82 | 0.0 | 0.06 | 16.22 | 0.00 | 2.190 | 11.34 | 0.30 | 5.2 | 94.8 | 0.0 | 0.66 | 1.18 | 0.59 | 0.80 | 1.18 | 9540 | 1135 | 1 | 0 | 21 | 0 | 0 | logfile |
✔ | 6E1N | 8958 | 2023-09-30 | 2018-07-10 | 3.7 | 3.85 | 3.77 | 3.8 | 0.015 | 1.55 | 0.0 | 0.07 | 14.72 | 0.01 | 2.054 | 10.59 | 0.37 | 8.3 | 91.6 | 0.2 | -5.21 | 0.49 | 0.72 | 1.63 | 3.8 | 0.003 | 0.80 | 0.0 | 0.04 | 16.01 | 0.00 | 2.211 | 13.08 | 0.74 | 5.8 | 94.2 | 0.0 | -0.96 | 0.89 | 0.52 | 0.72 | 0.61 | 10682 | 1278 | 6 | 0 | 24 | 2 | 0 | logfile |
✔ | 7RXA | 24726 | 2023-09-29 | 2021-08-22 | 3.08 | 3.22 | — | 3.3 | 0.006 | 1.11 | 0.0 | 0.05 | 15.07 | 0.01 | 2.381 | 1.32 | 0.00 | 5.4 | 94.6 | 0.0 | -4.42 | 0.67 | 0.84 | 2.99 | 3.3 | 0.004 | 0.59 | 0.0 | 0.04 | 13.97 | 0.00 | 2.236 | 3.35 | 0.00 | 5.0 | 95.0 | 0.0 | 0.66 | 0.32 | 0.67 | 0.85 | 2.86 | 8694 | 1156 | 4 | 0 | 8 | 0 | 0 | logfile |
✔ | 6VZ1 | 21481 | 2023-09-28 | 2020-02-27 | 3.2 | 3.35 | — | 3.4 | 0.014 | 1.25 | 0.0 | 0.06 | 19.42 | 0.01 | 1.864 | 10.74 | 0.00 | 12.0 | 88.0 | 0.0 | -4.38 | 0.59 | 0.86 | 3.07 | 3.4 | 0.003 | 0.60 | 0.0 | 0.04 | 17.88 | 0.00 | 2.184 | 8.23 | 0.42 | 5.5 | 94.5 | 0.0 | -0.43 | 1.28 | 0.54 | 0.84 | 2.65 | 7112 | 822 | 4 | 0 | 6 | 0 | 0 | logfile |
✘ | 6WCZ | 21618 | 2023-09-29 | 2020-03-31 | 4.0 | 4.24 | — | 4.0 | 0.009 | 1.22 | 0.0 | 0.06 | 12.53 | 0.01 | 2.085 | 14.60 | 2.55 | 12.9 | 87.1 | 0.0 | -4.79 | 0.82 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9894 | 1231 | 2 | 0 | 2 | 0 | 0 | logfile |
✔ | 7SAZ | 24959 | 2023-09-28 | 2021-09-23 | 3.0 | 3.13 | 2.81 | 3.1 | 0.004 | 0.63 | 0.0 | 0.04 | 13.70 | 0.00 | 2.188 | 9.47 | 0.00 | 3.7 | 96.2 | 0.1 | 0.22 | 0.63 | 0.85 | 2.55 | 3.1 | 0.003 | 0.53 | 0.0 | 0.04 | 16.86 | 0.00 | 2.153 | 8.68 | 2.04 | 3.1 | 96.8 | 0.1 | 1.86 | 1.29 | 0.62 | 0.86 | 2.12 | 5708 | 722 | 7 | 0 | 0 | 0 | 0 | logfile |