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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7RoG | 24594 | 2024-03-17 | 2021-07-30 | 3.8 | 4.00 | — | 3.7 | 0.007 | 0.74 | 0.0 | 0.05 | 12.33 | 0.01 | 2.355 | 14.52 | 1.33 | 5.4 | 94.6 | 0.0 | 1.76 | 0.67 | 0.85 | 1.80 | 3.8 | 0.004 | 0.73 | 0.0 | 0.04 | 14.62 | 0.01 | 2.140 | 11.30 | 1.19 | 4.0 | 96.0 | 0.0 | 3.11 | 1.65 | 0.66 | 0.84 | 1.80 | 137200 | 18800 | 200 | 0 | 0 | 0 | 0 | logfile |
✘ | 8JVM | 36677 | 2024-03-10 | 2023-06-28 | 3.86 | 4.13 | 3.89 | 3.9 | 0.006 | 1.08 | 1.0 | 0.06 | 14.54 | 0.01 | 2.138 | 27.03 | 1.75 | 16.3 | 82.1 | 1.6 | -3.56 | 0.64 | 0.54 | 0.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3726 | 498 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8G7o | 29818 | 2024-03-22 | 2023-02-16 | 3.4 | 3.73 | 3.51 | 3.6 | 0.003 | 0.57 | 0.0 | 0.05 | 14.09 | 0.00 | 2.133 | 3.99 | 0.00 | 2.2 | 97.8 | 0.0 | 1.72 | 0.69 | 0.85 | 2.60 | 3.6 | 0.002 | 0.51 | 0.0 | 0.04 | 14.55 | 0.00 | 2.206 | 4.45 | 1.07 | 1.7 | 98.3 | 0.0 | 1.61 | 0.39 | 0.68 | 0.86 | 2.22 | 33047 | 4389 | 21 | 0 | 7 | 0 | 0 | logfile |
✔ | 8HG7 | 34737 | 2024-03-10 | 2022-11-14 | 3.1 | 2.83 | 3.04 | 3.0 | 0.017 | 2.20 | 2.0 | 0.09 | 14.42 | 0.01 | 2.121 | 6.92 | 2.19 | 4.6 | 95.4 | 0.0 | -2.67 | 0.56 | 0.81 | 4.34 | 3.0 | 0.002 | 0.59 | 0.0 | 0.04 | 15.49 | 0.00 | 2.215 | 7.24 | 1.79 | 1.5 | 98.5 | 0.0 | 1.53 | 1.17 | 0.65 | 0.84 | 3.58 | 4808 | 619 | 3 | 0 | 3 | 2 | 0 | logfile |
✔ | 7YBJ | 33723 | 2024-03-20 | 2022-06-29 | 3.73 | 3.85 | 3.73 | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 13.01 | 0.00 | 2.110 | 9.11 | 0.00 | 4.3 | 95.7 | 0.0 | -0.43 | 0.74 | 0.76 | 1.78 | 3.8 | 0.005 | 0.66 | 0.0 | 0.04 | 15.13 | 0.00 | 2.103 | 12.51 | 2.33 | 6.3 | 93.7 | 0.0 | -0.29 | 0.54 | 0.74 | 0.76 | 1.74 | 25719 | 3282 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YPi | 34001 | 2024-03-23 | 2022-08-03 | 3.8 | 4.97 | 3.95 | 3.9 | 0.007 | 1.26 | 2.0 | 0.07 | 13.34 | 0.01 | 1.737 | 14.24 | 0.13 | 6.9 | 93.1 | 0.0 | -2.94 | 0.80 | 0.59 | -0.05 | 3.9 | 0.005 | 0.85 | 1.0 | 0.05 | 15.19 | 0.01 | 1.539 | 33.67 | 2.59 | 8.1 | 91.9 | 0.0 | -1.63 | 1.31 | 0.82 | 0.64 | -0.17 | 36476 | 4638 | 8 | 0 | 2 | 0 | 0 | logfile |
✔ | 8Ho7 | 34921 | 2024-03-16 | 2022-12-09 | 2.59 | 2.93 | 2.60 | 2.9 | 0.002 | 0.53 | 0.0 | 0.04 | 17.79 | 0.00 | 2.118 | 4.39 | 2.31 | 3.6 | 96.4 | 0.0 | 0.25 | 0.71 | 0.91 | 5.15 | 2.9 | 0.003 | 0.55 | 0.0 | 0.04 | 17.82 | 0.00 | 2.139 | 4.86 | 2.31 | 3.4 | 96.6 | 0.0 | 0.35 | 0.15 | 0.64 | 0.88 | 5.09 | 13227 | 1620 | 4 | 0 | 0 | 112 | 0 | logfile |
✔ | 8BCP | 15967 | 2024-03-17 | 2022-10-17 | 3.88 | 3.53 | 3.81 | 3.7 | 0.003 | 0.53 | 0.0 | 0.04 | 17.06 | 0.00 | 2.151 | 10.41 | 0.30 | 3.2 | 96.7 | 0.1 | -0.67 | 0.61 | 0.59 | 0.14 | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 17.75 | 0.00 | 2.047 | 12.54 | 4.84 | 3.9 | 96.0 | 0.1 | -0.98 | 2.14 | 0.76 | 0.81 | 2.19 | 18171 | 2337 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 8JV6 | 36669 | 2024-03-11 | 2023-06-27 | 3.43 | 3.73 | 3.38 | 3.7 | 0.004 | 0.59 | 0.0 | 0.05 | 15.64 | 0.00 | 2.184 | 7.00 | 0.00 | 2.7 | 97.3 | 0.0 | 0.26 | 0.62 | 0.83 | 2.25 | 3.7 | 0.003 | 0.57 | 0.0 | 0.04 | 15.71 | 0.00 | 2.229 | 7.28 | 2.61 | 3.2 | 96.8 | 0.0 | 0.30 | 0.30 | 0.59 | 0.82 | 2.28 | 7458 | 948 | 6 | 0 | 15 | 0 | 0 | logfile |
✔ | 3JAK | 6349 | 2024-03-24 | 2015-06-16 | 3.3 | 3.49 | — | 3.6 | 0.009 | 1.40 | 0.0 | 0.08 | 15.62 | 0.01 | 2.010 | 2.26 | 1.12 | 2.2 | 97.7 | 0.1 | 0.27 | 0.64 | 0.85 | 2.90 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 16.64 | 0.00 | 1.943 | 6.04 | 1.90 | 1.9 | 98.1 | 0.0 | 1.11 | 0.71 | 0.61 | 0.88 | 2.57 | 43066 | 5428 | 26 | 0 | 18 | 0 | 0 | logfile |
✔ | 6VH7 | 21200 | 2024-03-10 | 2020-01-09 | 3.8 | 3.84 | — | 4.1 | 0.007 | 1.03 | 0.0 | 0.05 | 15.14 | 0.01 | 2.318 | 28.35 | 2.13 | 12.4 | 87.6 | 0.0 | -4.78 | 0.54 | 0.62 | 2.62 | 4.0 | 0.003 | 0.76 | 0.0 | 0.05 | 16.82 | 0.00 | 2.300 | 9.42 | 2.48 | 6.8 | 93.2 | 0.0 | -4.21 | 3.67 | 0.59 | 0.67 | 1.69 | 4878 | 642 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8PYS | 18031 | 2024-03-14 | 2023-07-26 | 2.7 | 2.59 | 2.72 | 2.7 | 0.003 | 0.49 | 0.0 | 0.04 | 12.64 | 0.00 | 2.388 | 8.00 | 0.00 | 2.3 | 97.7 | 0.0 | 2.07 | 0.77 | 0.86 | 4.66 | 2.7 | 0.003 | 0.48 | 0.0 | 0.04 | 16.13 | 0.00 | 2.138 | 6.21 | 1.32 | 1.3 | 98.7 | 0.0 | 1.76 | 1.90 | 0.76 | 0.87 | 4.05 | 122040 | 15900 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 8JMN | 36424 | 2024-03-15 | 2023-06-05 | 2.26 | 2.43 | 2.28 | 2.4 | 0.007 | 0.92 | 0.0 | 0.05 | 18.78 | 0.01 | 1.890 | 5.76 | 3.29 | 2.3 | 97.7 | 0.0 | 1.14 | 0.68 | 0.86 | 4.55 | 2.4 | 0.004 | 0.58 | 0.0 | 0.04 | 18.19 | 0.01 | 1.858 | 5.96 | 1.88 | 1.4 | 98.6 | 0.0 | 0.81 | 1.09 | 0.69 | 0.87 | 4.52 | 10491 | 1251 | 6 | 0 | 11 | 373 | 0 | logfile |
✔ | 8P3P | 17389 | 2024-03-18 | 2023-05-18 | 2.5 | 3.25 | 2.58 | 3.0 | 0.003 | 0.63 | 0.0 | 0.03 | 16.19 | 0.00 | 2.267 | 5.98 | 0.86 | 4.1 | 95.9 | 0.0 | 3.26 | 0.76 | 0.89 | 2.76 | 3.0 | 0.003 | 0.64 | 0.0 | 0.03 | 16.50 | 0.00 | 2.331 | 5.68 | 1.40 | 3.6 | 96.4 | 0.0 | 3.90 | 0.21 | 0.73 | 0.86 | 2.54 | 21224 | 2656 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 8BXB | 16314 | 2024-03-15 | 2022-12-08 | 3.9 | 4.23 | 3.84 | 4.2 | 0.004 | 0.78 | 0.0 | 0.05 | 13.50 | 0.01 | 2.256 | 7.26 | 5.55 | 3.9 | 96.1 | 0.1 | -2.59 | 0.68 | 0.77 | 1.32 | 4.1 | 0.003 | 0.71 | 0.0 | 0.05 | 14.63 | 0.00 | 2.185 | 12.50 | 3.41 | 5.0 | 95.0 | 0.0 | -0.98 | 0.89 | 0.67 | 0.80 | 1.48 | 12547 | 1630 | 14 | 0 | 5 | 4 | 0 | logfile |
✔ | 8D13 | 27114 | 2024-03-14 | 2022-05-26 | 2.43 | 3.23 | 2.44 | 2.8 | 0.003 | 0.60 | 0.0 | 0.05 | 13.77 | 0.00 | 2.067 | 4.19 | 0.64 | 0.8 | 99.2 | 0.0 | 1.47 | 0.69 | 0.86 | 4.45 | 2.8 | 0.002 | 0.53 | 0.0 | 0.04 | 14.61 | 0.00 | 1.915 | 3.73 | 0.32 | 1.5 | 98.5 | 0.0 | 1.54 | 1.09 | 0.70 | 0.92 | 4.32 | 9216 | 1113 | 9 | 0 | 6 | 432 | 0 | logfile |
✔ | 8U7V | 42012 | 2024-03-21 | 2023-09-15 | 3.3 | 3.67 | 3.36 | 3.7 | 0.007 | 1.18 | 0.0 | 0.09 | 20.78 | 0.00 | 2.127 | 7.94 | 0.85 | 3.3 | 96.5 | 0.2 | -0.95 | 0.64 | 0.83 | 2.41 | 3.7 | 0.004 | 0.63 | 0.0 | 0.04 | 18.87 | 0.00 | 2.141 | 5.84 | 2.77 | 3.5 | 96.3 | 0.2 | -0.36 | 0.51 | 0.65 | 0.86 | 2.63 | 29680 | 3768 | 16 | 0 | 40 | 0 | 0 | logfile |
✔ | 8CYV | 27085 | 2024-03-10 | 2022-05-24 | 3.5 | 3.17 | 3.47 | 3.7 | 0.003 | 0.61 | 0.0 | 0.05 | 10.01 | 0.00 | 2.423 | 5.36 | 0.00 | 5.9 | 94.1 | 0.0 | -4.11 | 0.58 | 0.72 | 2.74 | 3.4 | 0.004 | 0.73 | 0.0 | 0.05 | 15.99 | 0.00 | 2.281 | 10.56 | 6.50 | 7.6 | 91.8 | 0.6 | -4.32 | 1.34 | 0.60 | 0.75 | 2.48 | 5964 | 864 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Y71 | 33650 | 2024-03-20 | 2022-06-21 | 3.12 | 3.37 | 3.19 | 3.4 | 0.003 | 0.61 | 1.0 | 0.05 | 15.55 | 0.00 | 1.894 | 7.57 | 0.17 | 4.6 | 95.3 | 0.1 | -0.81 | 0.67 | 0.74 | 2.12 | 3.4 | 0.003 | 0.60 | 0.0 | 0.04 | 16.10 | 0.00 | 2.177 | 5.81 | 3.36 | 4.1 | 95.9 | 0.0 | -0.51 | 0.46 | 0.69 | 0.82 | 2.06 | 27075 | 3428 | 15 | 0 | 28 | 0 | 0 | logfile |
✘ | 6XXE | 10648 | 2024-03-15 | 2020-01-27 | 3.49 | 2.31 | — | 3.3 | 0.007 | 1.09 | 0.0 | 0.06 | 11.82 | 0.00 | 2.471 | 6.11 | 2.27 | 11.0 | 89.0 | 0.0 | -4.99 | 0.62 | 0.57 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12816 | 1776 | 16 | 0 | 0 | 0 | 0 | logfile |