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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6R6B | 4734 | 2023-07-06 | 2019-03-26 | 3.5 | 4.29 | 3.51 | 3.9 | 0.010 | 1.36 | 1.0 | 0.07 | 12.49 | 0.01 | 1.771 | 6.90 | 1.97 | 8.6 | 91.1 | 0.4 | -5.15 | 0.70 | 0.70 | 2.25 | 3.9 | 0.004 | 1.05 | 0.0 | 0.05 | 15.88 | 0.00 | 2.128 | 17.81 | 0.47 | 6.9 | 93.0 | 0.1 | -0.44 | 4.28 | 0.73 | 0.85 | 0.89 | 11416 | 1452 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VNW | 21251 | 2023-07-13 | 2020-01-29 | 3.44 | 3.62 | — | 3.6 | 0.004 | 0.81 | 7.0 | 0.06 | 14.77 | 0.00 | 2.078 | 13.48 | 2.05 | 8.1 | 91.7 | 0.1 | -3.20 | 0.68 | 0.66 | 1.23 | 3.6 | 0.003 | 0.70 | 0.0 | 0.04 | 16.38 | 0.00 | 2.185 | 12.32 | 0.44 | 6.5 | 93.5 | 0.0 | -0.56 | 1.59 | 0.77 | 0.80 | 1.57 | 27486 | 3831 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 8S9P | 40241 | 2023-07-05 | 2023-03-29 | 3.8 | 4.16 | 3.92 | 4.0 | 0.005 | 0.82 | 0.0 | 0.05 | 17.16 | 0.01 | 2.024 | 21.44 | 1.88 | 9.3 | 90.5 | 0.2 | -2.07 | 0.80 | 0.78 | 1.62 | 4.0 | 0.006 | 0.85 | 0.0 | 0.05 | 17.20 | 0.01 | 2.084 | 24.93 | 1.28 | 10.1 | 89.8 | 0.1 | -2.31 | 0.99 | 0.80 | 0.79 | 1.61 | 9288 | 1189 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CXG | 27055 | 2023-07-09 | 2022-05-21 | 3.2 | 3.80 | 3.18 | 3.6 | 0.008 | 0.96 | 9.0 | 0.06 | 12.57 | 0.01 | 1.081 | 28.53 | 2.73 | 8.8 | 90.8 | 0.4 | -2.16 | 0.46 | 0.72 | 1.89 | 3.6 | 0.004 | 0.72 | 0.0 | 0.04 | 15.26 | 0.00 | 2.149 | 11.17 | 0.56 | 9.9 | 90.1 | 0.0 | -0.36 | 1.63 | 0.44 | 0.80 | 1.51 | 18381 | 2399 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ACK | 9594 | 2023-07-14 | 2018-07-26 | 4.5 | 4.60 | — | 4.3 | 0.010 | 1.35 | 3.0 | 0.07 | 11.39 | 0.01 | 1.533 | 15.24 | 0.79 | 16.1 | 83.5 | 0.5 | -4.81 | 0.80 | 0.72 | — | 4.3 | 0.004 | 0.80 | 0.0 | 0.05 | 12.31 | 0.00 | 2.057 | 24.53 | 0.00 | 13.4 | 86.3 | 0.3 | -3.00 | 1.55 | 0.80 | 0.72 | — | 29715 | 3784 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GC4 | 4380 | 2023-07-13 | 2018-04-17 | 4.3 | 4.54 | — | 4.3 | 0.003 | 0.77 | 0.0 | 0.03 | 13.73 | 0.01 | 2.252 | 4.11 | 0.39 | 6.9 | 92.9 | 0.2 | -3.77 | 0.70 | 0.60 | — | 4.3 | 0.008 | 0.89 | 0.0 | 0.04 | 16.38 | 0.01 | 1.958 | 31.29 | 0.04 | 13.2 | 86.6 | 0.2 | -3.03 | 1.05 | 0.81 | 0.80 | — | 80165 | 2836 | 26 | 2705 | 0 | 0 | 0 | logfile |
✔ | 7W6N | 32330 | 2023-07-09 | 2021-12-02 | 3.4 | 3.58 | — | 3.5 | 0.011 | 0.90 | 0.0 | 0.05 | 14.87 | 0.01 | 2.045 | 18.00 | 0.37 | 13.3 | 86.7 | 0.0 | -4.26 | 0.68 | 0.82 | 2.54 | 3.5 | 0.003 | 0.72 | 0.0 | 0.04 | 16.41 | 0.00 | 2.161 | 11.45 | 0.33 | 4.6 | 95.4 | 0.0 | -0.53 | 1.60 | 0.67 | 0.81 | 1.57 | 19720 | 2436 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LKi | 4068 | 2023-07-04 | 2016-07-22 | 3.46 | 3.72 | — | 3.5 | 0.013 | 1.24 | 5.0 | 0.06 | 10.71 | 0.01 | 0.579 | 39.51 | 0.18 | 7.7 | 91.7 | 0.6 | -4.39 | 0.65 | 0.79 | 2.37 | 3.5 | 0.004 | 0.83 | 0.0 | 0.04 | 15.10 | 0.00 | 2.088 | 15.46 | 0.70 | 7.1 | 92.5 | 0.4 | 0.24 | 0.81 | 0.63 | 0.80 | 1.65 | 55415 | 7135 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GC7 | 4382 | 2023-07-04 | 2018-04-17 | 4.3 | 4.85 | — | 4.4 | 0.003 | 0.67 | 0.0 | 0.03 | 13.13 | 0.00 | 2.251 | 5.08 | 0.28 | 5.9 | 93.9 | 0.1 | -4.27 | 0.76 | 0.61 | — | 4.4 | 0.007 | 0.65 | 0.0 | 0.03 | 15.19 | 0.00 | 1.974 | 24.68 | 0.00 | 9.8 | 90.1 | 0.1 | -2.10 | 1.65 | 0.91 | 0.86 | — | 54410 | 1738 | 17 | 1901 | 0 | 0 | 0 | logfile |
✔ | 8CZE | 27096 | 2023-07-06 | 2022-05-24 | 2.58 | 3.35 | 2.72 | 3.2 | 0.004 | 0.55 | 0.0 | 0.03 | 25.95 | 0.00 | 2.285 | 3.74 | 0.32 | 1.9 | 98.1 | 0.0 | 2.43 | 0.86 | 0.86 | 3.06 | 3.2 | 0.003 | 0.57 | 0.0 | 0.03 | 26.92 | 0.00 | 2.147 | 4.01 | 1.58 | 3.1 | 96.9 | 0.0 | 2.44 | 0.26 | 0.85 | 0.86 | 2.93 | 12029 | 763 | 10 | 292 | 0 | 0 | 0 | logfile |
✔ | 6YRF | 10888 | 2023-07-11 | 2020-04-20 | 3.9 | 4.58 | — | 4.2 | 0.006 | 0.78 | 0.0 | 0.05 | 14.50 | 0.00 | 2.028 | 27.54 | 0.21 | 12.8 | 87.1 | 0.1 | -3.65 | 0.91 | 0.84 | 1.12 | 4.2 | 0.003 | 0.71 | 0.0 | 0.04 | 15.77 | 0.00 | 2.084 | 16.66 | 0.43 | 10.1 | 89.9 | 0.0 | -0.77 | 0.56 | 0.91 | 0.82 | 0.90 | 24828 | 3108 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GVE | 34291 | 2023-07-04 | 2022-09-15 | 3.17 | 3.38 | 3.19 | 3.4 | 0.003 | 0.62 | 0.0 | 0.04 | 14.33 | 0.01 | 2.113 | 5.93 | 0.00 | 5.7 | 94.3 | 0.0 | 0.31 | 0.64 | 0.80 | 1.68 | 3.4 | 0.003 | 0.57 | 0.0 | 0.04 | 15.91 | 0.00 | 2.236 | 6.11 | 0.11 | 5.7 | 94.3 | 0.0 | 0.93 | 0.27 | 0.63 | 0.81 | 1.12 | 8054 | 1020 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GC6 | 4381 | 2023-07-05 | 2018-04-17 | 4.3 | 5.02 | — | 4.5 | 0.003 | 0.66 | 0.0 | 0.03 | 12.88 | 0.00 | 2.229 | 5.26 | 0.00 | 6.0 | 93.9 | 0.1 | -3.94 | 0.74 | 0.57 | — | 4.5 | 0.007 | 0.69 | 0.0 | 0.04 | 15.42 | 0.00 | 1.998 | 28.16 | 0.00 | 8.9 | 91.0 | 0.1 | -1.90 | 2.13 | 0.91 | 0.85 | — | 61404 | 2118 | 19 | 2092 | 0 | 0 | 0 | logfile |
✔ | 7W6T | 32335 | 2023-07-15 | 2021-12-02 | 3.85 | 4.45 | — | 3.9 | 0.006 | 0.87 | 0.0 | 0.05 | 14.59 | 0.01 | 2.034 | 32.67 | 0.29 | 10.7 | 89.2 | 0.1 | -4.74 | 0.64 | 0.67 | 0.30 | 3.9 | 0.004 | 0.79 | 0.0 | 0.04 | 16.11 | 0.00 | 2.058 | 24.86 | 0.40 | 7.6 | 92.4 | 0.0 | -1.69 | 1.26 | 0.63 | 0.64 | 0.17 | 31768 | 3934 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TAX | 25789 | 2023-07-13 | 2021-12-21 | 2.8 | 3.31 | — | 3.3 | 0.003 | 0.67 | 0.0 | 0.04 | 15.14 | 0.01 | 2.236 | 6.32 | 0.00 | 4.6 | 95.4 | 0.0 | -0.99 | 0.64 | 0.56 | 0.11 | 3.2 | 0.005 | 0.72 | 0.0 | 0.04 | 17.78 | 0.00 | 2.116 | 12.92 | 2.45 | 5.8 | 94.2 | 0.0 | -0.16 | 1.24 | 0.77 | 0.84 | 2.79 | 27855 | 3349 | 14 | 99 | 0 | 0 | 0 | logfile |
✔ | 8HDS | 34679 | 2023-07-03 | 2022-11-06 | 3.57 | 3.28 | 3.59 | 3.4 | 0.007 | 1.11 | 0.0 | 0.06 | 10.70 | 0.01 | 2.312 | 4.13 | 0.63 | 10.9 | 89.1 | 0.0 | -6.20 | 0.55 | 0.77 | 2.49 | 3.4 | 0.004 | 0.71 | 0.0 | 0.04 | 16.09 | 0.00 | 2.083 | 10.70 | 0.96 | 9.7 | 90.3 | 0.0 | -2.59 | 1.26 | 0.56 | 0.78 | 1.67 | 53532 | 6864 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GC0 | 4379 | 2023-07-14 | 2018-04-16 | 3.8 | 4.10 | — | 4.0 | 0.002 | 0.52 | 0.0 | 0.03 | 12.29 | 0.00 | 2.283 | 3.44 | 0.04 | 5.9 | 94.0 | 0.1 | -4.24 | 0.72 | 0.66 | 1.32 | 3.9 | 0.007 | 0.85 | 0.0 | 0.04 | 16.11 | 0.01 | 1.926 | 27.32 | 2.22 | 11.9 | 88.0 | 0.1 | -2.44 | 2.62 | 0.78 | 0.77 | 1.09 | 84138 | 2950 | 28 | 2848 | 0 | 0 | 0 | logfile |
✔ | 7VF2 | 31946 | 2023-07-07 | 2021-09-10 | 3.0 | 3.55 | — | 3.4 | 0.004 | 0.73 | 0.0 | 0.04 | 15.88 | 0.00 | 2.095 | 9.72 | 0.26 | 3.7 | 96.3 | 0.0 | -2.72 | 0.77 | 0.84 | 1.85 | 3.4 | 0.004 | 0.70 | 0.0 | 0.04 | 17.97 | 0.00 | 2.170 | 10.49 | 1.42 | 3.2 | 96.8 | 0.0 | 1.29 | 0.60 | 0.75 | 0.85 | 1.31 | 13565 | 1716 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TMW | 26003 | 2023-07-04 | 2022-01-20 | 3.2 | 2.40 | 3.16 | 3.2 | 0.003 | 0.70 | 0.0 | 0.05 | 13.22 | 0.01 | 2.193 | 9.31 | 0.00 | 2.6 | 97.4 | 0.0 | -0.28 | 0.71 | 0.64 | 1.01 | 2.0 | 0.004 | 0.65 | 0.0 | 0.04 | 15.85 | 0.00 | 2.125 | 15.17 | 0.63 | 3.8 | 96.2 | 0.0 | 0.29 | 0.52 | 0.73 | 0.68 | 0.81 | 7320 | 930 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R69 | 4733 | 2023-07-06 | 2019-03-26 | 3.65 | 4.14 | 3.57 | 3.7 | 0.005 | 0.90 | 0.0 | 0.04 | 14.42 | 0.01 | 2.191 | 13.18 | 0.15 | 9.8 | 89.8 | 0.4 | -3.99 | 0.75 | 0.76 | 0.73 | 3.7 | 0.004 | 0.90 | 0.0 | 0.05 | 16.00 | 0.01 | 2.144 | 15.26 | 0.29 | 8.1 | 91.8 | 0.1 | 0.12 | 0.94 | 0.77 | 0.83 | 0.86 | 12541 | 1629 | 10 | 0 | 0 | 0 | 0 | logfile |