Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7DZY	30921	2023-02-22	2021-01-26	3.6	3.83	3.38	3.1	0.020	2.12	0.0	0.00	4.32	0.01	1.980	3.14	0.00	3.7	95.4	0.9	-0.42	0.43	0.27	—	3.3	0.003	0.91	0.0	0.00	5.70	0.00	2.051	3.31	0.00	15.9	83.9	0.1	-2.90	2.20	0.70	0.69	—	18708	4677	9	0	0	0	0	logfile
✔	7V0M	26944	2023-02-17	2022-05-10	2.7	2.46	2.64	2.5	0.003	0.56	0.0	0.04	18.10	0.00	2.240	3.55	1.29	3.3	96.7	0.0	0.52	0.56	0.89	4.90	2.5	0.003	0.49	0.0	0.04	18.18	0.00	2.176	4.37	2.33	3.3	96.7	0.0	1.83	0.25	0.55	0.88	4.09	3724	483	4	0	0	60	0	logfile
✔	7Z4E	14494	2023-02-22	2022-03-03	4.14	5.32	4.15	4.2	0.004	0.55	0.0	0.04	15.77	0.00	2.196	9.63	1.64	2.0	98.0	0.0	0.67	0.88	0.76	—	4.3	0.004	0.61	0.0	0.04	16.22	0.00	2.159	18.25	0.00	3.5	96.5	0.0	0.86	3.44	0.90	0.81	—	14069	1357	4	142	0	0	0	logfile
✔	6RiU	4898	2023-02-17	2019-04-25	3.9	6.21	2.04	7.0	0.008	1.19	0.0	0.09	15.19	0.01	2.182	5.20	0.00	8.4	91.6	0.0	-5.77	0.59	0.69	0.56	7.1	0.002	0.64	0.0	0.03	15.97	0.00	2.064	12.47	0.00	3.9	96.1	0.0	-0.16	1.43	0.61	0.75	0.76	2882	182	2	0	0	0	1430	logfile
✔	6BX3	7303	2023-02-19	2017-12-16	4.3	4.71	—	4.4	0.007	1.49	0.0	0.08	12.65	0.01	1.094	24.88	0.97	18.8	81.2	0.1	-5.00	0.74	0.72	—	4.4	0.004	0.86	0.0	0.05	13.11	0.00	2.070	24.58	0.00	17.2	82.7	0.1	-3.48	1.39	0.74	0.72	—	10456	1413	7	0	0	0	0	logfile
✔	7BoZ	30137	2023-02-22	2020-03-20	3.8	3.72	—	3.7	0.010	1.84	0.0	0.08	13.23	0.01	2.141	11.02	1.32	13.1	85.3	1.5	-5.40	0.70	0.77	1.43	3.7	0.003	0.89	0.0	0.05	15.75	0.00	2.095	14.78	0.49	11.9	87.8	0.3	-3.11	2.16	0.72	0.82	1.87	18516	2328	18	0	0	0	0	logfile
✔	7WTS	32799	2023-02-23	2022-02-05	3.2	3.07	—	3.0	0.005	0.85	0.0	0.05	16.37	0.01	2.076	5.07	0.09	3.8	96.2	0.0	-1.00	0.75	0.75	2.70	3.0	0.007	0.76	0.0	0.04	16.96	0.01	2.057	9.88	0.46	4.5	95.5	0.0	0.08	0.38	0.77	0.77	2.58	61945	3777	23	1481	0	0	0	logfile
✔	8D5C	27208	2023-02-25	2022-06-04	3.9	4.25	3.98	4.2	0.002	0.48	0.0	0.04	13.15	0.00	1.991	32.36	0.00	7.0	93.0	0.0	-1.61	0.65	0.64	1.09	4.2	0.003	0.55	0.0	0.04	14.87	0.00	1.991	38.81	0.04	10.7	89.3	0.0	-1.68	1.24	0.67	0.67	1.04	26109	2730	15	0	0	0	4739	logfile
✔	7Z4K	14500	2023-02-21	2022-03-04	3.81	4.83	3.89	3.9	0.003	0.44	0.0	0.03	14.82	0.00	2.200	9.44	0.99	2.4	97.6	0.0	1.12	0.85	0.75	0.54	3.9	0.004	0.69	0.0	0.04	16.91	0.00	2.146	21.08	0.25	4.4	95.6	0.0	0.02	1.90	0.88	0.80	0.62	14005	1360	4	138	0	0	0	logfile
✔	7Z4G	14496	2023-02-20	2022-03-03	3.64	4.65	3.78	3.9	0.003	0.48	0.0	0.03	13.82	0.00	2.209	12.71	1.03	1.9	98.1	0.0	1.30	0.85	0.76	0.95	3.9	0.004	0.63	0.0	0.04	16.40	0.00	2.177	20.20	0.19	3.8	96.1	0.1	0.93	2.10	0.86	0.78	0.70	12714	1188	4	144	0	0	0	logfile
✔	7oCK	12809	2023-02-26	2021-04-27	3.6	5.02	—	8.3	0.008	0.86	0.0	0.05	14.98	0.01	1.988	36.10	0.20	7.7	92.1	0.2	-2.93	0.80	0.41	-0.16	5.6	0.005	0.92	0.0	0.05	16.96	0.01	2.008	39.34	0.37	7.5	92.4	0.1	-1.36	1.42	0.87	0.65	0.03	28276	3666	12	0	0	0	0	logfile
✔	6CP7	7549	2023-02-19	2018-03-13	4.1	4.11	—	4.1	0.008	1.42	0.0	0.07	13.16	0.01	1.577	14.52	3.98	6.6	92.9	0.5	-4.99	0.50	0.68	—	4.1	0.004	0.93	0.0	0.04	12.55	0.00	2.175	18.15	0.00	5.3	94.7	0.0	-0.79	1.03	0.51	0.70	—	9164	1234	16	0	0	0	0	logfile
✔	7Q3D	13789	2023-02-24	2021-10-27	3.35	4.59	3.40	3.7	0.013	1.35	0.0	0.08	11.91	0.01	2.466	1.34	0.00	1.5	98.5	0.0	0.50	0.86	0.73	0.90	3.7	0.003	0.63	0.0	0.04	14.65	0.00	2.021	11.55	0.48	3.4	96.6	0.0	0.72	2.84	0.86	0.73	0.91	22298	1391	3	0	0	0	11249	logfile
✔	8D44	27174	2023-02-19	2022-06-01	2.8	3.00	2.84	3.0	0.004	0.63	0.0	0.04	16.99	0.01	2.232	6.47	1.73	5.7	94.3	0.0	0.38	0.71	0.81	3.53	3.0	0.003	0.56	0.0	0.04	17.54	0.00	2.213	8.04	1.91	5.5	94.5	0.0	1.22	1.09	0.68	0.81	3.11	10472	1372	4	0	0	0	0	logfile
✔	7PQG	13593	2023-02-17	2021-09-21	3.7	4.20	—	4.0	0.004	0.88	0.0	0.05	12.56	0.01	2.204	28.21	0.28	7.4	92.6	0.0	-0.87	0.56	0.76	0.82	4.1	0.004	1.16	0.0	0.06	15.40	0.01	2.147	34.40	1.12	7.9	92.1	0.0	-1.28	0.74	0.56	0.77	-0.07	3251	423	2	0	0	0	0	logfile
✔	6RJU	4906	2023-02-16	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	9.8	0.003	0.63	0.0	0.03	15.97	0.00	2.424	6.03	0.00	6.2	93.8	0.0	-0.13	1.31	0.27	0.05	0.48	1992	131	1	0	0	0	997	logfile
✔	8CSV	26972	2023-02-17	2022-05-13	2.7	2.53	2.72	2.6	0.002	0.47	0.0	0.04	11.85	0.00	2.246	2.73	1.03	2.7	97.1	0.2	0.82	0.53	0.85	5.33	2.6	0.003	0.53	0.0	0.04	15.82	0.00	2.175	5.19	1.03	2.9	96.9	0.2	2.04	0.72	0.57	0.88	4.86	3712	483	3	0	0	48	0	logfile
✔	7ULW	26595	2023-02-22	2022-04-05	3.1	3.61	3.28	3.5	0.002	0.41	0.0	0.04	13.47	0.00	2.235	2.87	0.00	1.3	98.7	0.0	2.53	0.53	0.83	2.45	3.4	0.003	0.58	0.0	0.04	16.61	0.00	2.103	7.93	0.30	2.4	97.6	0.0	1.71	0.77	0.54	0.85	2.68	18766	2400	6	0	0	0	0	logfile
✔	7VX1	32167	2023-02-25	2021-11-12	3.5	2.44	—	3.4	0.002	0.49	1.0	0.04	7.46	0.00	1.753	8.22	0.00	4.3	95.7	0.1	-2.11	0.63	0.59	1.22	2.1	0.003	0.65	0.0	0.04	13.20	0.00	2.098	11.64	0.11	3.0	96.9	0.0	-0.65	1.38	0.66	0.64	1.34	25362	3237	3	0	0	0	0	logfile
✔	7NJ1	12369	2023-02-20	2021-02-14	2.9	2.23	—	1.9	0.005	0.70	1.0	0.05	13.54	0.00	2.211	9.21	1.09	7.4	92.4	0.2	-2.39	0.75	0.73	2.14	1.9	0.004	0.76	0.0	0.04	16.51	0.00	2.141	11.09	1.36	6.1	93.7	0.1	0.95	0.58	0.77	0.76	1.93	11096	1501	2	0	0	0	0	logfile

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