Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6R6B	4734	2023-07-06	2019-03-26	3.5	4.29	3.51	3.9	0.010	1.36	1.0	0.07	12.49	0.01	1.771	6.90	1.97	8.6	91.1	0.4	-5.15	0.70	0.70	2.25	3.9	0.004	1.05	0.0	0.05	15.88	0.00	2.128	17.81	0.47	6.9	93.0	0.1	-0.44	4.28	0.73	0.85	0.89	11416	1452	10	0	0	0	0	logfile
✔	6VNW	21251	2023-07-13	2020-01-29	3.44	3.62	—	3.6	0.004	0.81	7.0	0.06	14.77	0.00	2.078	13.48	2.05	8.1	91.7	0.1	-3.20	0.68	0.66	1.23	3.6	0.003	0.70	0.0	0.04	16.38	0.00	2.185	12.32	0.44	6.5	93.5	0.0	-0.56	1.59	0.77	0.80	1.57	27486	3831	8	0	0	0	0	logfile
✔	8S9P	40241	2023-07-05	2023-03-29	3.8	4.16	3.92	4.0	0.005	0.82	0.0	0.05	17.16	0.01	2.024	21.44	1.88	9.3	90.5	0.2	-2.07	0.80	0.78	1.62	4.0	0.006	0.85	0.0	0.05	17.20	0.01	2.084	24.93	1.28	10.1	89.8	0.1	-2.31	0.99	0.80	0.79	1.61	9288	1189	3	0	0	0	0	logfile
✔	8CXG	27055	2023-07-09	2022-05-21	3.2	3.80	3.18	3.6	0.008	0.96	9.0	0.06	12.57	0.01	1.081	28.53	2.73	8.8	90.8	0.4	-2.16	0.46	0.72	1.89	3.6	0.004	0.72	0.0	0.04	15.26	0.00	2.149	11.17	0.56	9.9	90.1	0.0	-0.36	1.63	0.44	0.80	1.51	18381	2399	12	0	0	0	0	logfile
✔	6ACK	9594	2023-07-14	2018-07-26	4.5	4.60	—	4.3	0.010	1.35	3.0	0.07	11.39	0.01	1.533	15.24	0.79	16.1	83.5	0.5	-4.81	0.80	0.72	—	4.3	0.004	0.80	0.0	0.05	12.31	0.00	2.057	24.53	0.00	13.4	86.3	0.3	-3.00	1.55	0.80	0.72	—	29715	3784	4	0	0	0	0	logfile
✔	6GC4	4380	2023-07-13	2018-04-17	4.3	4.54	—	4.3	0.003	0.77	0.0	0.03	13.73	0.01	2.252	4.11	0.39	6.9	92.9	0.2	-3.77	0.70	0.60	—	4.3	0.008	0.89	0.0	0.04	16.38	0.01	1.958	31.29	0.04	13.2	86.6	0.2	-3.03	1.05	0.81	0.80	—	80165	2836	26	2705	0	0	0	logfile
✔	7W6N	32330	2023-07-09	2021-12-02	3.4	3.58	—	3.5	0.011	0.90	0.0	0.05	14.87	0.01	2.045	18.00	0.37	13.3	86.7	0.0	-4.26	0.68	0.82	2.54	3.5	0.003	0.72	0.0	0.04	16.41	0.00	2.161	11.45	0.33	4.6	95.4	0.0	-0.53	1.60	0.67	0.81	1.57	19720	2436	8	0	0	0	0	logfile
✔	5LKi	4068	2023-07-04	2016-07-22	3.46	3.72	—	3.5	0.013	1.24	5.0	0.06	10.71	0.01	0.579	39.51	0.18	7.7	91.7	0.6	-4.39	0.65	0.79	2.37	3.5	0.004	0.83	0.0	0.04	15.10	0.00	2.088	15.46	0.70	7.1	92.5	0.4	0.24	0.81	0.63	0.80	1.65	55415	7135	5	0	0	0	0	logfile
✔	6GC7	4382	2023-07-04	2018-04-17	4.3	4.85	—	4.4	0.003	0.67	0.0	0.03	13.13	0.00	2.251	5.08	0.28	5.9	93.9	0.1	-4.27	0.76	0.61	—	4.4	0.007	0.65	0.0	0.03	15.19	0.00	1.974	24.68	0.00	9.8	90.1	0.1	-2.10	1.65	0.91	0.86	—	54410	1738	17	1901	0	0	0	logfile
✔	8CZE	27096	2023-07-06	2022-05-24	2.58	3.35	2.72	3.2	0.004	0.55	0.0	0.03	25.95	0.00	2.285	3.74	0.32	1.9	98.1	0.0	2.43	0.86	0.86	3.06	3.2	0.003	0.57	0.0	0.03	26.92	0.00	2.147	4.01	1.58	3.1	96.9	0.0	2.44	0.26	0.85	0.86	2.93	12029	763	10	292	0	0	0	logfile
✔	6YRF	10888	2023-07-11	2020-04-20	3.9	4.58	—	4.2	0.006	0.78	0.0	0.05	14.50	0.00	2.028	27.54	0.21	12.8	87.1	0.1	-3.65	0.91	0.84	1.12	4.2	0.003	0.71	0.0	0.04	15.77	0.00	2.084	16.66	0.43	10.1	89.9	0.0	-0.77	0.56	0.91	0.82	0.90	24828	3108	4	0	0	0	0	logfile
✔	8GVE	34291	2023-07-04	2022-09-15	3.17	3.38	3.19	3.4	0.003	0.62	0.0	0.04	14.33	0.01	2.113	5.93	0.00	5.7	94.3	0.0	0.31	0.64	0.80	1.68	3.4	0.003	0.57	0.0	0.04	15.91	0.00	2.236	6.11	0.11	5.7	94.3	0.0	0.93	0.27	0.63	0.81	1.12	8054	1020	2	0	0	0	0	logfile
✔	6GC6	4381	2023-07-05	2018-04-17	4.3	5.02	—	4.5	0.003	0.66	0.0	0.03	12.88	0.00	2.229	5.26	0.00	6.0	93.9	0.1	-3.94	0.74	0.57	—	4.5	0.007	0.69	0.0	0.04	15.42	0.00	1.998	28.16	0.00	8.9	91.0	0.1	-1.90	2.13	0.91	0.85	—	61404	2118	19	2092	0	0	0	logfile
✔	7W6T	32335	2023-07-15	2021-12-02	3.85	4.45	—	3.9	0.006	0.87	0.0	0.05	14.59	0.01	2.034	32.67	0.29	10.7	89.2	0.1	-4.74	0.64	0.67	0.30	3.9	0.004	0.79	0.0	0.04	16.11	0.00	2.058	24.86	0.40	7.6	92.4	0.0	-1.69	1.26	0.63	0.64	0.17	31768	3934	10	0	0	0	0	logfile
✔	7TAX	25789	2023-07-13	2021-12-21	2.8	3.31	—	3.3	0.003	0.67	0.0	0.04	15.14	0.01	2.236	6.32	0.00	4.6	95.4	0.0	-0.99	0.64	0.56	0.11	3.2	0.005	0.72	0.0	0.04	17.78	0.00	2.116	12.92	2.45	5.8	94.2	0.0	-0.16	1.24	0.77	0.84	2.79	27855	3349	14	99	0	0	0	logfile
✔	8HDS	34679	2023-07-03	2022-11-06	3.57	3.28	3.59	3.4	0.007	1.11	0.0	0.06	10.70	0.01	2.312	4.13	0.63	10.9	89.1	0.0	-6.20	0.55	0.77	2.49	3.4	0.004	0.71	0.0	0.04	16.09	0.00	2.083	10.70	0.96	9.7	90.3	0.0	-2.59	1.26	0.56	0.78	1.67	53532	6864	24	0	0	0	0	logfile
✔	6GC0	4379	2023-07-14	2018-04-16	3.8	4.10	—	4.0	0.002	0.52	0.0	0.03	12.29	0.00	2.283	3.44	0.04	5.9	94.0	0.1	-4.24	0.72	0.66	1.32	3.9	0.007	0.85	0.0	0.04	16.11	0.01	1.926	27.32	2.22	11.9	88.0	0.1	-2.44	2.62	0.78	0.77	1.09	84138	2950	28	2848	0	0	0	logfile
✔	7VF2	31946	2023-07-07	2021-09-10	3.0	3.55	—	3.4	0.004	0.73	0.0	0.04	15.88	0.00	2.095	9.72	0.26	3.7	96.3	0.0	-2.72	0.77	0.84	1.85	3.4	0.004	0.70	0.0	0.04	17.97	0.00	2.170	10.49	1.42	3.2	96.8	0.0	1.29	0.60	0.75	0.85	1.31	13565	1716	4	0	0	0	0	logfile
✔	7TMW	26003	2023-07-04	2022-01-20	3.2	2.40	3.16	3.2	0.003	0.70	0.0	0.05	13.22	0.01	2.193	9.31	0.00	2.6	97.4	0.0	-0.28	0.71	0.64	1.01	2.0	0.004	0.65	0.0	0.04	15.85	0.00	2.125	15.17	0.63	3.8	96.2	0.0	0.29	0.52	0.73	0.68	0.81	7320	930	4	0	0	0	0	logfile
✔	6R69	4733	2023-07-06	2019-03-26	3.65	4.14	3.57	3.7	0.005	0.90	0.0	0.04	14.42	0.01	2.191	13.18	0.15	9.8	89.8	0.4	-3.99	0.75	0.76	0.73	3.7	0.004	0.90	0.0	0.05	16.00	0.01	2.144	15.26	0.29	8.1	91.8	0.1	0.12	0.94	0.77	0.83	0.86	12541	1629	10	0	0	0	0	logfile

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