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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7BWD | 30232 | 2024-03-18 | 2020-04-14 | 4.32 | 4.37 | — | 4.3 | 0.009 | 0.93 | 0.0 | 0.05 | 26.47 | 0.01 | 1.348 | 6.94 | 2.98 | 6.3 | 93.7 | 0.0 | -5.07 | 0.80 | 0.80 | — | 4.3 | 0.006 | 0.70 | 0.0 | 0.04 | 25.90 | 0.00 | 2.037 | 14.35 | 0.09 | 5.5 | 94.5 | 0.0 | -1.37 | 1.68 | 0.80 | 0.79 | — | 16042 | 1257 | 14 | 292 | 0 | 0 | 0 | logfile |
✔ | 7NPT | 12520 | 2024-03-11 | 2021-02-28 | 3.27 | 3.21 | 3.16 | 3.2 | 0.007 | 1.19 | 0.0 | 0.05 | 14.11 | 0.01 | 2.338 | 2.91 | 0.00 | 1.8 | 98.2 | 0.0 | -1.66 | 0.55 | 0.72 | 3.44 | 3.2 | 0.003 | 0.59 | 0.0 | 0.04 | 15.78 | 0.00 | 1.998 | 6.51 | 1.08 | 2.8 | 97.2 | 0.0 | 0.55 | 1.47 | 0.57 | 0.76 | 2.08 | 8609 | 552 | 3 | 0 | 0 | 0 | 4288 | logfile |
✔ | 7X0A | 32922 | 2024-03-12 | 2022-02-21 | 3.1 | 3.17 | — | 3.4 | 0.003 | 0.50 | 0.0 | 0.04 | 11.70 | 0.00 | 1.679 | 3.53 | 0.04 | 3.4 | 96.6 | 0.0 | -3.71 | 0.71 | 0.62 | 0.78 | 3.1 | 0.003 | 0.71 | 0.0 | 0.04 | 16.21 | 0.00 | 2.044 | 14.68 | 2.08 | 3.9 | 96.1 | 0.0 | 0.33 | 1.70 | 0.75 | 0.71 | 0.70 | 61215 | 8019 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TT3 | 26109 | 2024-03-18 | 2022-01-31 | 4.3 | 4.47 | — | 4.4 | 0.006 | 0.99 | 0.0 | 0.05 | 10.46 | 0.01 | 2.059 | 4.09 | 0.00 | 1.1 | 98.9 | 0.0 | 1.09 | 0.73 | 0.75 | — | 4.4 | 0.003 | 0.60 | 0.0 | 0.04 | 12.71 | 0.00 | 1.937 | 7.75 | 0.00 | 4.3 | 95.7 | 0.0 | -0.28 | 1.09 | 0.72 | 0.78 | — | 20524 | 1338 | 6 | 0 | 0 | 0 | 10060 | logfile |
✔ | 7TT4 | 26110 | 2024-03-18 | 2022-01-31 | 4.2 | 4.40 | — | 4.3 | 0.005 | 0.77 | 0.0 | 0.05 | 10.61 | 0.00 | 2.051 | 2.23 | 0.00 | 1.2 | 98.8 | 0.0 | 0.72 | 0.72 | 0.76 | — | 4.3 | 0.002 | 0.57 | 0.0 | 0.04 | 13.04 | 0.00 | 2.028 | 6.25 | 0.00 | 2.1 | 97.9 | 0.0 | 0.60 | 2.39 | 0.70 | 0.77 | — | 20633 | 1346 | 6 | 0 | 0 | 0 | 10107 | logfile |
✔ | 6WUJ | 21914 | 2024-03-11 | 2020-05-04 | 3.7 | 3.85 | — | 3.8 | 0.007 | 0.93 | 0.0 | 0.05 | 13.20 | 0.01 | 2.059 | 10.11 | 0.15 | 16.1 | 83.8 | 0.1 | -5.66 | 0.71 | 0.82 | 3.23 | 3.8 | 0.003 | 0.71 | 0.0 | 0.04 | 15.04 | 0.00 | 2.144 | 9.21 | 2.04 | 9.6 | 90.4 | 0.0 | -2.07 | 0.55 | 0.71 | 0.81 | 2.40 | 6699 | 884 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DA4 | 30622 | 2024-03-10 | 2020-10-14 | 4.24 | 3.75 | — | 4.2 | 0.010 | 1.54 | 0.0 | 0.08 | 17.16 | 0.01 | 2.245 | 79.80 | 0.00 | 50.0 | 50.0 | 0.0 | -8.65 | 0.39 | 0.66 | — | 4.3 | 0.004 | 0.98 | 0.0 | 0.04 | 11.88 | 0.00 | 2.201 | 17.17 | 0.00 | 25.0 | 75.0 | 0.0 | -5.95 | 3.06 | 0.36 | 0.60 | — | 507 | 66 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LMU | 0920 | 2024-03-18 | 2019-12-26 | 3.4 | 3.65 | 3.35 | 3.7 | 0.010 | 1.16 | 0.0 | 0.06 | 16.07 | 0.01 | 2.320 | 5.34 | 1.50 | 10.7 | 89.3 | 0.0 | -5.98 | 0.66 | 0.73 | 2.00 | 3.7 | 0.004 | 0.75 | 0.0 | 0.04 | 16.81 | 0.00 | 2.224 | 10.56 | 3.45 | 7.7 | 92.3 | 0.0 | 0.27 | 0.54 | 0.60 | 0.73 | 1.10 | 22429 | 2893 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 5X5B | 6705 | 2024-03-19 | 2017-02-15 | 3.7 | 3.87 | — | 3.8 | 0.006 | 1.13 | 0.0 | 0.06 | 10.42 | 0.01 | 2.241 | 8.73 | 0.66 | 12.0 | 88.0 | 0.0 | -4.94 | 0.79 | 0.78 | 1.59 | 3.8 | 0.004 | 0.75 | 0.0 | 0.05 | 14.85 | 0.00 | 2.112 | 17.51 | 3.63 | 10.4 | 89.6 | 0.0 | -2.18 | 3.32 | 0.81 | 0.78 | 1.17 | 24541 | 3139 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LQ6 | 23482 | 2024-03-10 | 2021-02-13 | 3.28 | 4.07 | 3.16 | 3.5 | 0.005 | 0.76 | 0.0 | 0.05 | 15.77 | 0.00 | 1.549 | 9.45 | 1.41 | 5.5 | 94.4 | 0.2 | -4.83 | 0.90 | 0.85 | 3.36 | 3.5 | 0.002 | 0.59 | 0.0 | 0.04 | 16.29 | 0.00 | 2.146 | 7.09 | 0.88 | 3.9 | 96.1 | 0.0 | 0.16 | 1.02 | 0.91 | 0.87 | 1.86 | 5267 | 672 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5XWY | 6777 | 2024-03-15 | 2017-06-30 | 3.2 | 3.25 | — | 3.2 | 0.008 | 1.18 | 1.0 | 0.06 | 14.68 | 0.00 | 2.263 | 3.64 | 0.87 | 7.6 | 92.3 | 0.1 | -5.96 | 0.69 | 0.78 | 3.96 | 3.2 | 0.004 | 0.72 | 0.0 | 0.04 | 17.62 | 0.00 | 2.075 | 11.21 | 2.80 | 7.5 | 92.5 | 0.0 | -0.41 | 1.39 | 0.77 | 0.88 | 3.27 | 10493 | 1117 | 2 | 51 | 0 | 0 | 0 | logfile |
✔ | 6V9X | 21129 | 2024-03-17 | 2019-12-16 | 3.3 | 3.52 | 3.34 | 3.5 | 0.005 | 0.90 | 0.0 | 0.05 | 15.21 | 0.01 | 2.280 | 3.52 | 1.24 | 3.9 | 96.1 | 0.0 | -5.84 | 0.74 | 0.80 | 1.79 | 3.5 | 0.003 | 0.65 | 0.0 | 0.04 | 16.33 | 0.00 | 2.093 | 8.87 | 3.58 | 4.1 | 95.9 | 0.0 | 0.89 | 1.36 | 0.76 | 0.83 | 1.94 | 18084 | 2284 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KR2 | 23000 | 2024-03-18 | 2020-11-18 | 3.2 | 3.55 | — | 3.5 | 0.020 | 1.65 | 0.0 | 0.09 | 11.59 | 0.01 | 2.415 | 1.77 | 0.65 | 1.7 | 98.3 | 0.0 | -0.74 | 0.77 | 0.76 | 3.76 | 3.5 | 0.003 | 0.66 | 0.0 | 0.04 | 16.04 | 0.00 | 2.045 | 12.77 | 1.71 | 1.7 | 98.3 | 0.0 | 0.86 | 0.91 | 0.75 | 0.80 | 3.32 | 19712 | 2492 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oLK | 20115 | 2024-03-18 | 2019-04-16 | 4.0 | 4.14 | — | 4.1 | 0.005 | 1.04 | 0.0 | 0.06 | 5.09 | 0.01 | 2.445 | 0.20 | 0.00 | 2.3 | 97.7 | 0.0 | -0.75 | 0.56 | 0.49 | — | 4.1 | 0.005 | 0.93 | 0.0 | 0.05 | 7.00 | 0.00 | 2.045 | 9.16 | 0.00 | 14.0 | 86.0 | 0.0 | -2.47 | 1.44 | 0.64 | 0.61 | — | 10323 | 2094 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TSZ | 26105 | 2024-03-18 | 2022-01-31 | 4.5 | 4.77 | — | 4.6 | 0.005 | 0.89 | 0.0 | 0.05 | 11.13 | 0.01 | 2.032 | 6.90 | 0.00 | 1.2 | 98.8 | 0.0 | 0.72 | 0.73 | 0.70 | — | 4.6 | 0.002 | 0.55 | 0.0 | 0.04 | 12.63 | 0.00 | 1.945 | 8.12 | 0.00 | 3.2 | 96.8 | 0.0 | -0.14 | 1.03 | 0.73 | 0.73 | — | 19722 | 1286 | 6 | 0 | 0 | 0 | 9670 | logfile |
✔ | 6WYK | 21967 | 2024-03-10 | 2020-05-13 | 4.0 | 4.14 | — | 4.2 | 0.007 | 0.77 | 0.0 | 0.05 | 11.98 | 0.00 | 2.223 | 5.97 | 0.00 | 3.4 | 96.6 | 0.0 | -2.28 | 0.62 | 0.77 | — | 4.2 | 0.004 | 0.77 | 0.0 | 0.04 | 16.10 | 0.00 | 2.204 | 10.05 | 4.29 | 1.9 | 98.1 | 0.0 | 2.01 | 0.80 | 0.62 | 0.78 | — | 3083 | 415 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JZX | 22583 | 2024-03-19 | 2020-09-02 | 3.4 | 3.20 | — | 3.4 | 0.009 | 0.92 | 0.0 | 0.05 | 17.05 | 0.01 | 2.239 | 5.33 | 0.40 | 7.0 | 93.0 | 0.0 | -3.94 | 0.91 | 0.86 | 2.98 | 3.4 | 0.005 | 0.63 | 0.0 | 0.04 | 17.67 | 0.00 | 2.026 | 10.87 | 2.33 | 7.7 | 92.3 | 0.0 | -0.79 | 0.39 | 0.92 | 0.88 | 2.48 | 23948 | 2954 | 11 | 61 | 0 | 0 | 0 | logfile |
✔ | 7ARi | 11883 | 2024-03-14 | 2020-10-25 | 3.4 | 3.64 | — | 3.6 | 0.003 | 0.78 | 0.0 | 0.05 | 13.73 | 0.00 | 2.339 | 3.87 | 0.68 | 4.4 | 95.6 | 0.0 | -5.94 | 0.64 | 0.67 | 0.67 | 3.6 | 0.003 | 0.72 | 0.0 | 0.04 | 16.28 | 0.00 | 2.158 | 9.49 | 3.12 | 5.1 | 94.9 | 0.0 | -1.67 | 0.89 | 0.70 | 0.78 | 0.74 | 9538 | 1246 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XTB | 10618 | 2024-03-10 | 2020-01-15 | 4.3 | 4.32 | — | 3.9 | 0.006 | 1.17 | 0.0 | 0.07 | 8.68 | 0.00 | 2.369 | 3.00 | 0.00 | 15.6 | 84.4 | 0.0 | -4.66 | 0.32 | 0.43 | — | 4.1 | 0.005 | 1.12 | 0.0 | 0.05 | 9.13 | 0.00 | 2.119 | 10.22 | 0.00 | 25.1 | 74.9 | 0.0 | -5.72 | 2.48 | 0.34 | 0.65 | — | 1161 | 235 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FD5 | 29002 | 2024-03-10 | 2022-12-02 | 4.57 | 4.19 | — | 10.0 | 0.016 | 2.15 | 4.0 | 0.13 | 13.14 | 0.02 | 2.541 | 0.16 | 0.29 | 3.8 | 96.2 | 0.0 | -1.38 | 0.28 | 0.02 | — | 3.6 | 0.002 | 0.67 | 0.0 | 0.04 | 13.21 | 0.01 | 2.134 | 9.88 | 0.00 | 6.0 | 94.0 | 0.0 | -1.15 | 1.23 | 0.39 | 0.12 | — | 3214 | 419 | 1 | 0 | 0 | 0 | 0 | logfile |