The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6GY6 | 0088 | 2021-03-20 | 2018-06-28 | 4.0 | 3.98 | — | 3.8 | 0.006 | 0.88 | 0.0 | 0.05 | 10.55 | 0.01 | 2.234 | 4.84 | 1.08 | 2.6 | 97.4 | 0.0 | -4.40 | 0.90 | 0.84 | — | 3.8 | 0.002 | 0.58 | 0.0 | 0.04 | 12.76 | 0.00 | 2.086 | 9.33 | 0.02 | 1.8 | 98.2 | 0.0 | 2.89 | 1.45 | 0.90 | 0.85 | — | 72462 | 9139 | 26 | 0 | 0 | 0 | 0 | logfile |
✔ | 6FQ8 | 4299 | 2021-03-20 | 2018-02-13 | 4.8 | 6.62 | — | 4.8 | 0.008 | 1.16 | 0.0 | 0.07 | 26.99 | 0.01 | 2.252 | 8.40 | 0.16 | 2.3 | 97.7 | 0.0 | -0.86 | 0.84 | 0.71 | — | 4.9 | 0.007 | 0.87 | 0.0 | 0.05 | 31.22 | 0.01 | 1.897 | 44.12 | 0.00 | 5.4 | 94.6 | 0.0 | -0.46 | 1.14 | 0.87 | 0.78 | — | 11913 | 744 | 10 | 294 | 0 | 0 | 0 | logfile |
✔ | 6o1M | 0592 | 2021-03-22 | 2019-02-20 | 3.15 | 2.52 | 3.29 | 3.2 | 0.006 | 0.99 | 1.0 | 0.06 | 12.00 | 0.01 | 2.315 | 5.71 | 0.55 | 6.5 | 93.5 | 0.0 | -3.39 | 0.80 | 0.78 | 2.87 | 3.2 | 0.003 | 0.60 | 0.0 | 0.04 | 13.60 | 0.00 | 2.083 | 8.16 | 0.06 | 6.0 | 94.0 | 0.0 | -0.88 | 0.96 | 0.81 | 0.78 | 2.43 | 31047 | 1841 | 18 | 36 | 0 | 0 | 15371 | logfile |
✔ | 6QJP | 4565 | 2021-03-20 | 2019-01-24 | 3.5 | 3.64 | 2.32 | 4.1 | 0.009 | 1.01 | 0.0 | 0.07 | 9.52 | 0.01 | 2.605 | 1.16 | 0.00 | 3.2 | 96.8 | 0.0 | -2.50 | 0.37 | 0.74 | 3.05 | 4.2 | 0.006 | 0.81 | 0.0 | 0.05 | 12.50 | 0.00 | 2.517 | 9.26 | 0.00 | 6.5 | 93.5 | 0.0 | -2.56 | 1.60 | 0.38 | 0.74 | 3.92 | 816 | 105 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N24 | 9322 | 2021-03-20 | 2018-11-12 | 3.0 | 3.88 | — | 3.7 | 0.007 | 0.78 | 0.0 | 0.05 | 9.04 | 0.01 | 2.332 | 3.64 | 0.29 | 3.6 | 96.4 | 0.0 | -6.07 | 0.73 | 0.84 | 3.71 | 3.8 | 0.005 | 0.63 | 0.0 | 0.04 | 11.07 | 0.00 | 2.182 | 7.13 | 0.14 | 2.7 | 97.3 | 0.0 | 0.30 | 2.30 | 0.67 | 0.78 | 3.07 | 12643 | 1530 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 5XXB | 6778 | 2021-03-23 | 2017-07-03 | 3.17 | 3.22 | — | 3.2 | 0.006 | 1.07 | 5.0 | 0.09 | 17.43 | 0.00 | 1.261 | 4.86 | 4.74 | 7.1 | 91.3 | 1.5 | -3.54 | 0.65 | 0.77 | 2.19 | 3.2 | 0.008 | 0.76 | 0.0 | 0.04 | 15.85 | 0.01 | 1.959 | 9.11 | 0.06 | 7.1 | 92.4 | 0.6 | -1.21 | 0.67 | 0.81 | 0.85 | 2.47 | 121433 | 6215 | 44 | 3352 | 0 | 0 | 0 | logfile |
✔ | 6N26 | 9324 | 2021-03-20 | 2018-11-12 | 3.0 | 3.29 | — | 3.2 | 0.008 | 0.83 | 0.0 | 0.05 | 9.20 | 0.01 | 2.277 | 2.55 | 0.00 | 3.2 | 96.8 | 0.0 | -6.12 | 0.72 | 0.83 | 4.16 | 3.2 | 0.002 | 0.59 | 0.0 | 0.04 | 12.47 | 0.00 | 2.211 | 6.54 | 0.00 | 1.4 | 98.6 | 0.0 | 0.77 | 0.74 | 0.71 | 0.82 | 2.82 | 13190 | 1595 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NAV | 0397 | 2021-03-21 | 2018-12-06 | 4.1 | 4.14 | — | 4.1 | 0.005 | 0.82 | 0.0 | 0.06 | 8.77 | 0.00 | 2.245 | 4.10 | 0.00 | 4.7 | 95.3 | 0.0 | -2.96 | 0.62 | 0.82 | — | 4.1 | 0.003 | 0.58 | 0.0 | 0.04 | 11.44 | 0.00 | 2.116 | 7.99 | 0.05 | 5.7 | 94.3 | 0.0 | -0.55 | 1.55 | 0.63 | 0.83 | — | 18711 | 2751 | 21 | 0 | 0 | 0 | 0 | logfile |
✔ | 6FQ6 | 4298 | 2021-03-20 | 2018-02-13 | 4.0 | 4.69 | — | 4.1 | 0.009 | 1.10 | 0.0 | 0.07 | 26.79 | 0.01 | 2.261 | 7.97 | 0.32 | 2.3 | 97.7 | 0.0 | -0.84 | 0.84 | 0.73 | — | 4.1 | 0.005 | 0.73 | 0.0 | 0.04 | 29.10 | 0.01 | 2.024 | 25.21 | 0.00 | 3.8 | 96.2 | 0.0 | -0.18 | 1.73 | 0.85 | 0.76 | — | 11987 | 752 | 10 | 294 | 0 | 0 | 0 | logfile |
✔ | 5WQ9 | 6677 | 2021-03-23 | 2016-11-23 | 4.22 | 4.37 | — | 4.2 | 0.009 | 1.25 | 15.0 | 0.07 | 11.97 | 0.01 | 1.501 | 38.10 | 2.89 | 4.4 | 95.4 | 0.2 | -2.32 | 0.78 | 0.68 | — | 4.2 | 0.003 | 0.79 | 0.0 | 0.05 | 13.17 | 0.00 | 2.074 | 12.50 | 0.03 | 4.0 | 96.0 | 0.0 | 0.18 | 1.98 | 0.85 | 0.83 | — | 56340 | 7395 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ESF | 3947 | 2021-03-20 | 2017-10-20 | 3.7 | 3.94 | — | 3.9 | 0.008 | 0.97 | 0.0 | 0.05 | 28.67 | 0.01 | 2.249 | 4.96 | 0.94 | 4.4 | 95.6 | 0.0 | -4.25 | 0.79 | 0.75 | 1.48 | 3.8 | 0.004 | 0.64 | 0.0 | 0.04 | 28.67 | 0.00 | 2.125 | 12.30 | 0.00 | 4.7 | 95.3 | 0.0 | 1.20 | 1.53 | 0.80 | 0.77 | 1.49 | 12091 | 762 | 10 | 294 | 0 | 0 | 0 | logfile |
✔ | 5H1S | 9572 | 2021-03-21 | 2016-10-11 | 3.5 | 3.54 | — | 3.5 | 0.010 | 1.06 | 1.0 | 0.07 | 19.14 | 0.01 | 1.028 | 46.10 | 3.21 | 16.7 | 81.7 | 1.6 | -4.90 | 0.78 | 0.77 | 1.92 | 3.5 | 0.006 | 0.82 | 0.0 | 0.04 | 17.94 | 0.01 | 1.925 | 15.05 | 0.04 | 12.7 | 87.0 | 0.3 | -2.82 | 0.70 | 0.79 | 0.83 | 1.96 | 90825 | 3276 | 32 | 3018 | 0 | 0 | 0 | logfile |
✔ | 6FQ5 | 4297 | 2021-03-20 | 2018-02-13 | 3.8 | 4.09 | — | 3.9 | 0.008 | 1.09 | 0.0 | 0.06 | 28.57 | 0.01 | 2.253 | 3.54 | 0.31 | 2.4 | 97.6 | 0.0 | -1.55 | 0.82 | 0.74 | 0.85 | 3.9 | 0.003 | 0.62 | 0.0 | 0.03 | 27.85 | 0.00 | 2.111 | 12.85 | 0.15 | 1.7 | 98.3 | 0.0 | 1.84 | 2.22 | 0.84 | 0.79 | 1.54 | 12193 | 774 | 10 | 294 | 0 | 0 | 0 | logfile |
✔ | 3JA7 | 6324 | 2021-03-22 | 2015-04-21 | 3.6 | 3.71 | — | 3.7 | 0.010 | 1.55 | 0.0 | 0.06 | 15.94 | 0.01 | 1.528 | 37.29 | 10.44 | 11.0 | 86.8 | 2.1 | -4.92 | 0.77 | 0.82 | 1.86 | 3.7 | 0.004 | 0.78 | 0.0 | 0.04 | 13.93 | 0.00 | 2.210 | 11.17 | 0.00 | 6.2 | 93.2 | 0.6 | -1.50 | 1.71 | 0.78 | 0.80 | 2.13 | 41280 | 5136 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KZ3 | 0784 | 2021-03-21 | 2019-09-23 | 3.1 | 3.29 | — | 3.2 | 0.006 | 0.68 | 0.0 | 0.05 | 13.19 | 0.00 | 2.194 | 9.64 | 0.82 | 11.2 | 88.8 | 0.0 | -4.17 | 0.82 | 0.86 | 3.00 | 3.2 | 0.003 | 0.65 | 0.0 | 0.05 | 12.91 | 0.00 | 2.097 | 7.83 | 0.00 | 9.0 | 91.0 | 0.0 | -1.48 | 0.40 | 0.81 | 0.86 | 3.14 | 20046 | 2646 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DV6 | 8915 | 2021-03-22 | 2018-06-22 | 3.9 | 4.12 | — | 4.2 | 0.010 | 1.32 | 0.0 | 0.07 | 14.14 | 0.01 | 1.835 | 8.13 | 7.64 | 6.5 | 93.5 | 0.0 | -4.93 | 0.71 | 0.80 | 1.58 | 4.2 | 0.004 | 0.79 | 0.0 | 0.05 | 13.25 | 0.01 | 2.036 | 10.83 | 0.16 | 4.9 | 95.1 | 0.0 | -2.31 | 1.89 | 0.63 | 0.84 | 2.07 | 40950 | 5370 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N07 | 9312 | 2021-03-22 | 2018-11-06 | 3.6 | 3.73 | — | 3.7 | 0.006 | 0.78 | 0.0 | 0.05 | 9.00 | 0.01 | 2.330 | 5.11 | 0.06 | 2.3 | 97.7 | 0.0 | -3.72 | 0.78 | 0.86 | 3.84 | 3.7 | 0.005 | 0.68 | 0.0 | 0.05 | 12.93 | 0.00 | 2.123 | 13.14 | 0.03 | 2.2 | 97.8 | 0.0 | -0.21 | 2.19 | 0.80 | 0.86 | 3.15 | 32833 | 4523 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N06 | 9311 | 2021-03-21 | 2018-11-06 | 3.4 | 3.49 | — | 3.5 | 0.005 | 0.74 | 0.0 | 0.05 | 8.24 | 0.01 | 2.241 | 7.19 | 0.04 | 1.9 | 98.1 | 0.0 | -4.01 | 0.76 | 0.85 | 3.99 | 3.4 | 0.005 | 0.64 | 0.0 | 0.05 | 12.97 | 0.00 | 2.086 | 11.00 | 0.00 | 1.8 | 98.2 | 0.0 | -0.03 | 1.61 | 0.78 | 0.87 | 3.57 | 28197 | 3915 | 39 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SEE | 10153 | 2021-03-20 | 2019-07-29 | 4.2 | 4.47 | — | 4.1 | 0.008 | 0.94 | 0.0 | 0.05 | 27.63 | 0.01 | 2.252 | 4.46 | 0.00 | 3.0 | 97.0 | 0.0 | -1.74 | 0.87 | 0.83 | — | 4.1 | 0.004 | 0.71 | 0.0 | 0.04 | 28.56 | 0.00 | 2.045 | 18.87 | 0.00 | 3.7 | 96.3 | 0.0 | 0.23 | 1.52 | 0.87 | 0.82 | — | 11949 | 756 | 11 | 290 | 0 | 0 | 0 | logfile |
✔ | 6SEF | 10154 | 2021-03-20 | 2019-07-29 | 3.7 | 4.25 | — | 3.6 | 0.007 | 0.85 | 0.0 | 0.05 | 27.92 | 0.00 | 2.225 | 4.94 | 0.00 | 2.7 | 97.3 | 0.0 | -2.10 | 0.88 | 0.84 | 2.28 | 3.6 | 0.007 | 0.72 | 0.0 | 0.04 | 28.79 | 0.00 | 2.038 | 17.44 | 0.16 | 3.5 | 96.5 | 0.0 | 0.64 | 0.76 | 0.89 | 0.85 | 2.55 | 11919 | 751 | 11 | 290 | 0 | 0 | 0 | logfile |