Table showing results for March 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6GY6	0088	2021-03-20	2018-06-28	4.0	3.98	—	3.8	0.006	0.88	0.0	0.05	10.55	0.01	2.234	4.84	1.08	2.6	97.4	0.0	-4.40	0.90	0.84	—	3.8	0.002	0.58	0.0	0.04	12.76	0.00	2.086	9.33	0.02	1.8	98.2	0.0	2.89	1.45	0.90	0.85	—	72462	9139	26	0	0	0	0	logfile
✔	6FQ8	4299	2021-03-20	2018-02-13	4.8	6.62	—	4.8	0.008	1.16	0.0	0.07	26.99	0.01	2.252	8.40	0.16	2.3	97.7	0.0	-0.86	0.84	0.71	—	4.9	0.007	0.87	0.0	0.05	31.22	0.01	1.897	44.12	0.00	5.4	94.6	0.0	-0.46	1.14	0.87	0.78	—	11913	744	10	294	0	0	0	logfile
✔	6o1M	0592	2021-03-22	2019-02-20	3.15	2.52	3.29	3.2	0.006	0.99	1.0	0.06	12.00	0.01	2.315	5.71	0.55	6.5	93.5	0.0	-3.39	0.80	0.78	2.87	3.2	0.003	0.60	0.0	0.04	13.60	0.00	2.083	8.16	0.06	6.0	94.0	0.0	-0.88	0.96	0.81	0.78	2.43	31047	1841	18	36	0	0	15371	logfile
✔	6QJP	4565	2021-03-20	2019-01-24	3.5	3.64	2.32	4.1	0.009	1.01	0.0	0.07	9.52	0.01	2.605	1.16	0.00	3.2	96.8	0.0	-2.50	0.37	0.74	3.05	4.2	0.006	0.81	0.0	0.05	12.50	0.00	2.517	9.26	0.00	6.5	93.5	0.0	-2.56	1.60	0.38	0.74	3.92	816	105	3	0	0	0	0	logfile
✔	6N24	9322	2021-03-20	2018-11-12	3.0	3.88	—	3.7	0.007	0.78	0.0	0.05	9.04	0.01	2.332	3.64	0.29	3.6	96.4	0.0	-6.07	0.73	0.84	3.71	3.8	0.005	0.63	0.0	0.04	11.07	0.00	2.182	7.13	0.14	2.7	97.3	0.0	0.30	2.30	0.67	0.78	3.07	12643	1530	5	0	0	0	0	logfile
✔	5XXB	6778	2021-03-23	2017-07-03	3.17	3.22	—	3.2	0.006	1.07	5.0	0.09	17.43	0.00	1.261	4.86	4.74	7.1	91.3	1.5	-3.54	0.65	0.77	2.19	3.2	0.008	0.76	0.0	0.04	15.85	0.01	1.959	9.11	0.06	7.1	92.4	0.6	-1.21	0.67	0.81	0.85	2.47	121433	6215	44	3352	0	0	0	logfile
✔	6N26	9324	2021-03-20	2018-11-12	3.0	3.29	—	3.2	0.008	0.83	0.0	0.05	9.20	0.01	2.277	2.55	0.00	3.2	96.8	0.0	-6.12	0.72	0.83	4.16	3.2	0.002	0.59	0.0	0.04	12.47	0.00	2.211	6.54	0.00	1.4	98.6	0.0	0.77	0.74	0.71	0.82	2.82	13190	1595	5	0	0	0	0	logfile
✔	6NAV	0397	2021-03-21	2018-12-06	4.1	4.14	—	4.1	0.005	0.82	0.0	0.06	8.77	0.00	2.245	4.10	0.00	4.7	95.3	0.0	-2.96	0.62	0.82	—	4.1	0.003	0.58	0.0	0.04	11.44	0.00	2.116	7.99	0.05	5.7	94.3	0.0	-0.55	1.55	0.63	0.83	—	18711	2751	21	0	0	0	0	logfile
✔	6FQ6	4298	2021-03-20	2018-02-13	4.0	4.69	—	4.1	0.009	1.10	0.0	0.07	26.79	0.01	2.261	7.97	0.32	2.3	97.7	0.0	-0.84	0.84	0.73	—	4.1	0.005	0.73	0.0	0.04	29.10	0.01	2.024	25.21	0.00	3.8	96.2	0.0	-0.18	1.73	0.85	0.76	—	11987	752	10	294	0	0	0	logfile
✔	5WQ9	6677	2021-03-23	2016-11-23	4.22	4.37	—	4.2	0.009	1.25	15.0	0.07	11.97	0.01	1.501	38.10	2.89	4.4	95.4	0.2	-2.32	0.78	0.68	—	4.2	0.003	0.79	0.0	0.05	13.17	0.00	2.074	12.50	0.03	4.0	96.0	0.0	0.18	1.98	0.85	0.83	—	56340	7395	15	0	0	0	0	logfile
✔	6ESF	3947	2021-03-20	2017-10-20	3.7	3.94	—	3.9	0.008	0.97	0.0	0.05	28.67	0.01	2.249	4.96	0.94	4.4	95.6	0.0	-4.25	0.79	0.75	1.48	3.8	0.004	0.64	0.0	0.04	28.67	0.00	2.125	12.30	0.00	4.7	95.3	0.0	1.20	1.53	0.80	0.77	1.49	12091	762	10	294	0	0	0	logfile
✔	5H1S	9572	2021-03-21	2016-10-11	3.5	3.54	—	3.5	0.010	1.06	1.0	0.07	19.14	0.01	1.028	46.10	3.21	16.7	81.7	1.6	-4.90	0.78	0.77	1.92	3.5	0.006	0.82	0.0	0.04	17.94	0.01	1.925	15.05	0.04	12.7	87.0	0.3	-2.82	0.70	0.79	0.83	1.96	90825	3276	32	3018	0	0	0	logfile
✔	6FQ5	4297	2021-03-20	2018-02-13	3.8	4.09	—	3.9	0.008	1.09	0.0	0.06	28.57	0.01	2.253	3.54	0.31	2.4	97.6	0.0	-1.55	0.82	0.74	0.85	3.9	0.003	0.62	0.0	0.03	27.85	0.00	2.111	12.85	0.15	1.7	98.3	0.0	1.84	2.22	0.84	0.79	1.54	12193	774	10	294	0	0	0	logfile
✔	3JA7	6324	2021-03-22	2015-04-21	3.6	3.71	—	3.7	0.010	1.55	0.0	0.06	15.94	0.01	1.528	37.29	10.44	11.0	86.8	2.1	-4.92	0.77	0.82	1.86	3.7	0.004	0.78	0.0	0.04	13.93	0.00	2.210	11.17	0.00	6.2	93.2	0.6	-1.50	1.71	0.78	0.80	2.13	41280	5136	12	0	0	0	0	logfile
✔	6KZ3	0784	2021-03-21	2019-09-23	3.1	3.29	—	3.2	0.006	0.68	0.0	0.05	13.19	0.00	2.194	9.64	0.82	11.2	88.8	0.0	-4.17	0.82	0.86	3.00	3.2	0.003	0.65	0.0	0.05	12.91	0.00	2.097	7.83	0.00	9.0	91.0	0.0	-1.48	0.40	0.81	0.86	3.14	20046	2646	6	0	0	0	0	logfile
✔	6DV6	8915	2021-03-22	2018-06-22	3.9	4.12	—	4.2	0.010	1.32	0.0	0.07	14.14	0.01	1.835	8.13	7.64	6.5	93.5	0.0	-4.93	0.71	0.80	1.58	4.2	0.004	0.79	0.0	0.05	13.25	0.01	2.036	10.83	0.16	4.9	95.1	0.0	-2.31	1.89	0.63	0.84	2.07	40950	5370	15	0	0	0	0	logfile
✔	6N07	9312	2021-03-22	2018-11-06	3.6	3.73	—	3.7	0.006	0.78	0.0	0.05	9.00	0.01	2.330	5.11	0.06	2.3	97.7	0.0	-3.72	0.78	0.86	3.84	3.7	0.005	0.68	0.0	0.05	12.93	0.00	2.123	13.14	0.03	2.2	97.8	0.0	-0.21	2.19	0.80	0.86	3.15	32833	4523	42	0	0	0	0	logfile
✔	6N06	9311	2021-03-21	2018-11-06	3.4	3.49	—	3.5	0.005	0.74	0.0	0.05	8.24	0.01	2.241	7.19	0.04	1.9	98.1	0.0	-4.01	0.76	0.85	3.99	3.4	0.005	0.64	0.0	0.05	12.97	0.00	2.086	11.00	0.00	1.8	98.2	0.0	-0.03	1.61	0.78	0.87	3.57	28197	3915	39	0	0	0	0	logfile
✔	6SEE	10153	2021-03-20	2019-07-29	4.2	4.47	—	4.1	0.008	0.94	0.0	0.05	27.63	0.01	2.252	4.46	0.00	3.0	97.0	0.0	-1.74	0.87	0.83	—	4.1	0.004	0.71	0.0	0.04	28.56	0.00	2.045	18.87	0.00	3.7	96.3	0.0	0.23	1.52	0.87	0.82	—	11949	756	11	290	0	0	0	logfile
✔	6SEF	10154	2021-03-20	2019-07-29	3.7	4.25	—	3.6	0.007	0.85	0.0	0.05	27.92	0.00	2.225	4.94	0.00	2.7	97.3	0.0	-2.10	0.88	0.84	2.28	3.6	0.007	0.72	0.0	0.04	28.79	0.00	2.038	17.44	0.16	3.5	96.5	0.0	0.64	0.76	0.89	0.85	2.55	11919	751	11	290	0	0	0	logfile

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