The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6T0W | 10361 | 2023-11-15 | 2019-10-03 | 3.18 | 3.27 | 3.23 | 3.2 | 0.008 | 0.80 | 0.0 | 0.05 | 14.46 | 0.01 | 2.251 | 4.31 | 6.26 | 5.6 | 94.3 | 0.1 | -3.70 | 0.72 | 0.85 | 3.43 | 3.2 | 0.004 | 0.59 | 0.0 | 0.04 | 15.20 | 0.00 | 2.186 | 6.03 | 0.18 | 3.3 | 96.7 | 0.0 | -0.02 | 0.53 | 0.73 | 0.86 | 3.28 | 10556 | 1268 | 4 | 25 | 0 | 0 | 0 | logfile |
✔ | 8G6K | 29772 | 2023-11-14 | 2023-02-15 | 3.6 | 3.71 | 3.52 | 3.4 | 0.002 | 0.48 | 0.0 | 0.04 | 4.19 | 0.00 | 2.523 | 0.20 | 0.00 | 2.7 | 97.3 | 0.0 | 1.65 | 0.54 | 0.71 | — | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 4.50 | 0.00 | 2.284 | 2.64 | 0.00 | 6.7 | 93.3 | 0.0 | 0.05 | 1.47 | 0.54 | 0.74 | — | 9388 | 1379 | 7 | 0 | 0 | 0 | 2576 | logfile |
✔ | 6oFJ | 20047 | 2023-11-15 | 2019-03-30 | 4.5 | 5.60 | 3.27 | 7.8 | 0.007 | 0.96 | 0.0 | 0.05 | 15.74 | 0.01 | 2.135 | 3.69 | 0.00 | 7.1 | 92.9 | 0.0 | -4.36 | 0.48 | 0.33 | — | 7.8 | 0.002 | 0.58 | 0.0 | 0.04 | 14.03 | 0.00 | 2.002 | 10.00 | 0.00 | 8.7 | 91.3 | 0.0 | -1.93 | 1.22 | 0.56 | 0.54 | — | 10310 | 650 | 2 | 0 | 0 | 0 | 5142 | logfile |
✔ | 5MBV | 3460 | 2023-11-18 | 2016-11-08 | 3.8 | 4.14 | — | 3.8 | 0.002 | 0.51 | 0.0 | 0.04 | 10.21 | 0.00 | 2.172 | 7.06 | 0.74 | 4.7 | 95.2 | 0.1 | -3.37 | 0.87 | 0.81 | 0.98 | 3.8 | 0.004 | 0.71 | 0.0 | 0.04 | 13.50 | 0.00 | 2.114 | 12.19 | 0.23 | 3.9 | 96.0 | 0.0 | 1.12 | 0.89 | 0.88 | 0.83 | 1.41 | 24118 | 3014 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ToE | 26030 | 2023-11-16 | 2022-01-24 | 3.0 | 3.29 | — | 3.3 | 0.003 | 0.59 | 0.0 | 0.04 | 14.04 | 0.00 | 2.201 | 8.94 | 0.12 | 3.9 | 96.0 | 0.1 | -0.13 | 0.72 | 0.83 | 3.59 | 3.3 | 0.004 | 0.62 | 0.0 | 0.04 | 16.98 | 0.00 | 2.138 | 10.14 | 1.10 | 4.0 | 96.0 | 0.0 | -0.24 | 0.48 | 0.74 | 0.87 | 3.05 | 15100 | 1868 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7EZH | 31387 | 2023-11-14 | 2021-06-01 | 3.2 | 2.28 | — | 2.1 | 0.004 | 0.68 | 1.0 | 0.05 | 12.75 | 0.01 | 2.278 | 2.69 | 0.74 | 4.7 | 95.2 | 0.1 | -1.38 | 0.73 | 0.72 | 2.97 | 2.1 | 0.003 | 0.69 | 0.0 | 0.04 | 15.50 | 0.00 | 2.128 | 12.18 | 0.64 | 2.7 | 97.3 | 0.0 | 0.92 | 1.61 | 0.75 | 0.76 | 2.13 | 8838 | 1150 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NPU | 12521 | 2023-11-17 | 2021-02-28 | 4.48 | 4.74 | 4.43 | 3.8 | 0.008 | 1.19 | 0.0 | 0.06 | 11.87 | 0.01 | 2.086 | 1.37 | 0.37 | 1.8 | 98.1 | 0.1 | -0.61 | 0.66 | 0.68 | — | 3.8 | 0.003 | 0.60 | 0.0 | 0.04 | 12.55 | 0.00 | 1.902 | 8.02 | 0.00 | 2.8 | 97.2 | 0.0 | 1.44 | 3.28 | 0.69 | 0.76 | — | 126727 | 8230 | 24 | 0 | 0 | 0 | 64397 | logfile |
✔ | 7PDG | 13337 | 2023-11-14 | 2021-08-05 | 4.3 | 4.51 | — | 3.1 | 0.005 | 0.82 | 0.0 | 0.05 | 14.59 | 0.00 | 2.161 | 16.17 | 0.00 | 5.2 | 94.8 | 0.0 | -0.49 | 0.58 | 0.72 | — | 3.1 | 0.003 | 0.73 | 0.0 | 0.04 | 14.74 | 0.00 | 2.173 | 12.63 | 0.00 | 4.3 | 95.7 | 0.0 | 0.21 | 0.88 | 0.58 | 0.72 | — | 7642 | 970 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RZ9 | 24755 | 2023-11-19 | 2021-08-27 | 4.15 | 3.58 | — | 4.1 | 0.007 | 0.98 | 0.0 | 0.05 | 10.41 | 0.01 | 2.264 | 3.46 | 0.26 | 5.6 | 94.4 | 0.0 | -5.15 | 0.68 | 0.80 | — | 4.1 | 0.003 | 0.60 | 0.0 | 0.04 | 13.04 | 0.00 | 2.174 | 8.74 | 0.00 | 3.5 | 96.5 | 0.0 | 0.04 | 1.16 | 0.69 | 0.78 | — | 27934 | 3550 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6R93 | 4767 | 2023-11-18 | 2019-04-02 | 4.0 | 4.29 | — | 4.1 | 0.010 | 1.48 | 2.0 | 0.10 | 29.24 | 0.01 | 1.600 | 2.04 | 0.00 | 2.5 | 97.0 | 0.5 | 0.30 | 0.78 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22961 | 775 | 10 | 290 | 0 | 0 | 10123 | logfile |
✔ | 8FYF | 29572 | 2023-11-15 | 2023-01-26 | 3.4 | 3.26 | 3.38 | 3.4 | 0.003 | 0.58 | 0.0 | 0.04 | 14.09 | 0.00 | 2.218 | 5.61 | 0.14 | 2.7 | 97.3 | 0.0 | 2.89 | 0.57 | 0.83 | 1.72 | 3.3 | 0.003 | 0.52 | 0.0 | 0.04 | 14.55 | 0.00 | 2.209 | 5.68 | 0.14 | 2.4 | 97.6 | 0.0 | 3.58 | 0.93 | 0.55 | 0.85 | 1.53 | 13202 | 830 | 4 | 0 | 0 | 0 | 6754 | logfile |
✔ | 7UAG | 26425 | 2023-11-14 | 2022-03-12 | 3.5 | 3.78 | 3.45 | 3.9 | 0.004 | 0.66 | 0.0 | 0.05 | 13.11 | 0.01 | 2.247 | 17.66 | 0.00 | 6.5 | 93.4 | 0.1 | -1.43 | 0.65 | 0.67 | 1.75 | 3.8 | 0.005 | 0.70 | 0.0 | 0.05 | 15.39 | 0.01 | 2.060 | 17.86 | 0.37 | 6.8 | 93.2 | 0.0 | -1.47 | 0.40 | 0.67 | 0.68 | 1.33 | 7588 | 938 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6E0G | 8947 | 2023-11-15 | 2018-07-06 | 2.9 | 2.97 | — | 3.0 | 0.010 | 1.03 | 0.0 | 0.06 | 10.04 | 0.01 | 2.030 | 9.03 | 0.00 | 6.7 | 92.6 | 0.6 | -3.72 | 0.62 | 0.71 | 2.41 | 3.0 | 0.004 | 0.72 | 0.0 | 0.05 | 14.17 | 0.00 | 2.174 | 17.04 | 2.54 | 6.6 | 93.4 | 0.0 | -0.92 | 1.63 | 0.61 | 0.73 | 2.57 | 12910 | 1650 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7o0Z | 12684 | 2023-11-14 | 2021-03-28 | 3.7 | 4.56 | — | 4.1 | 0.007 | 1.08 | 0.0 | 0.06 | 15.07 | 0.01 | 2.319 | 5.56 | 0.44 | 6.4 | 93.6 | 0.0 | -5.96 | 0.74 | 0.79 | 1.62 | 4.1 | 0.003 | 0.76 | 0.0 | 0.04 | 15.96 | 0.00 | 2.141 | 14.44 | 0.00 | 5.7 | 94.3 | 0.0 | -0.01 | 1.19 | 0.74 | 0.80 | 1.31 | 8730 | 1142 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TXi | 26158 | 2023-11-20 | 2022-02-09 | 3.5 | 3.86 | — | 3.7 | 0.008 | 0.99 | 0.0 | 0.05 | 12.09 | 0.01 | 0.409 | 13.97 | 0.00 | 5.7 | 93.8 | 0.5 | 1.39 | 0.53 | 0.82 | 2.16 | 3.6 | 0.003 | 0.80 | 0.0 | 0.05 | 15.08 | 0.01 | 2.129 | 11.75 | 0.22 | 6.5 | 93.0 | 0.5 | 0.91 | 1.29 | 0.54 | 0.83 | 2.34 | 28660 | 3920 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QLA | 14066 | 2023-11-14 | 2021-12-20 | 3.85 | 3.91 | 3.77 | 3.9 | 0.003 | 0.62 | 0.0 | 0.04 | 13.83 | 0.00 | 2.117 | 13.19 | 0.00 | 6.4 | 93.6 | 0.0 | -1.33 | 0.72 | 0.76 | 1.18 | 3.8 | 0.003 | 0.76 | 0.0 | 0.04 | 15.73 | 0.00 | 2.136 | 14.14 | 0.41 | 5.3 | 94.7 | 0.0 | -0.81 | 0.52 | 0.73 | 0.76 | 1.64 | 6837 | 874 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5J8V | 8073 | 2023-11-18 | 2016-04-08 | 4.9 | 4.81 | — | 4.7 | 0.024 | 2.67 | 214.0 | 0.16 | 10.17 | 0.01 | 1.145 | 73.68 | 28.71 | 6.2 | 86.5 | 7.3 | 2.50 | 0.71 | 0.67 | — | 4.7 | 0.003 | 0.96 | 4.0 | 0.04 | 9.37 | 0.00 | 2.173 | 6.74 | 0.32 | 9.5 | 88.8 | 1.7 | 0.19 | 0.81 | 0.75 | 0.74 | — | 73616 | 13812 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7W6K | 32328 | 2023-11-13 | 2021-12-01 | 3.5 | 4.56 | 3.58 | 4.1 | 0.007 | 1.13 | 4.0 | 0.07 | 14.61 | 0.01 | 2.337 | 47.37 | 2.01 | 7.1 | 92.9 | 0.0 | -3.58 | 0.66 | 0.76 | 1.46 | 4.2 | 0.003 | 0.76 | 0.0 | 0.04 | 17.14 | 0.00 | 2.213 | 13.20 | 0.72 | 4.6 | 95.4 | 0.0 | 1.07 | 3.50 | 0.63 | 0.76 | 1.00 | 6468 | 820 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6X8T | 22095 | 2023-11-19 | 2020-06-01 | 2.9 | 2.95 | 2.71 | 2.9 | 0.007 | 0.68 | 0.0 | 0.05 | 12.90 | 0.01 | 1.483 | 6.41 | 0.41 | 5.4 | 94.6 | 0.0 | -0.76 | 0.86 | 0.88 | 4.43 | 2.9 | 0.002 | 0.50 | 0.0 | 0.04 | 15.63 | 0.00 | 2.225 | 4.94 | 0.70 | 5.0 | 95.0 | 0.0 | 0.24 | 3.98 | 0.86 | 0.89 | 4.12 | 133440 | 16800 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ooA | 17008 | 2023-11-14 | 2023-04-04 | 3.18 | 1.83 | 3.09 | 2.8 | 0.008 | 1.08 | 0.0 | 0.06 | 28.16 | 0.01 | 2.299 | 5.05 | 0.00 | 1.5 | 98.5 | 0.0 | -2.10 | 0.75 | 0.76 | 3.22 | 2.8 | 0.003 | 0.57 | 0.0 | 0.03 | 28.73 | 0.00 | 2.121 | 7.38 | 0.45 | 1.9 | 98.1 | 0.0 | 2.31 | 1.02 | 0.77 | 0.76 | 2.64 | 8405 | 529 | 8 | 204 | 0 | 0 | 0 | logfile |