Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VHJ	31996	2023-04-27	2021-09-22	4.2	4.29	—	4.2	0.004	0.65	0.0	0.04	13.11	0.00	2.109	15.60	0.07	8.2	91.8	0.0	-3.85	0.76	0.79	—	4.2	0.004	0.67	0.0	0.04	13.43	0.00	2.034	14.92	0.00	7.7	92.3	0.0	-1.62	0.56	0.76	0.79	—	25353	3257	3	0	0	0	0	logfile
✔	7TW1	26147	2023-04-26	2022-02-06	4.6	3.99	—	3.8	0.003	0.74	0.0	0.05	13.82	0.00	2.117	7.55	0.08	2.5	97.5	0.0	-0.20	0.75	0.78	—	3.7	0.003	0.64	0.0	0.04	13.96	0.00	2.179	12.52	0.04	4.1	95.9	0.0	-0.25	1.17	0.75	0.79	—	23625	2993	4	0	0	0	0	logfile
✔	6W2E	21526	2023-04-22	2020-03-05	4.4	4.45	—	4.4	0.006	1.04	1.0	0.06	10.30	0.01	1.618	7.99	0.68	4.5	95.1	0.4	-2.37	0.33	0.53	—	4.4	0.004	0.82	0.0	0.05	13.54	0.01	2.053	16.84	0.07	6.5	93.4	0.1	-1.20	1.37	0.40	0.75	—	62525	7943	19	0	0	0	0	logfile
✔	6M02	30028	2023-04-24	2020-02-19	3.2	3.49	3.90	3.9	0.006	0.96	0.0	0.05	16.35	0.01	2.263	6.38	1.64	7.0	93.0	0.0	-6.29	0.60	0.70	1.57	3.9	0.003	0.69	0.0	0.04	17.04	0.00	2.284	10.32	0.52	4.1	95.9	0.0	-1.79	1.20	0.61	0.71	1.40	18935	2345	7	0	0	0	0	logfile
✔	7UN6	26614	2023-04-21	2022-04-09	3.3	3.43	3.19	3.6	0.004	0.60	0.0	0.04	13.87	0.00	1.879	11.49	0.00	5.0	95.0	0.0	-0.89	0.49	0.57	2.11	3.6	0.003	0.64	0.0	0.04	16.12	0.00	2.100	11.27	0.20	5.0	95.0	0.0	-0.07	0.70	0.57	0.70	1.64	9042	1118	3	0	0	0	0	logfile
✘	6VWK	21419	2023-04-20	2020-02-20	3.3	3.56	—	3.5	0.010	1.30	4.0	0.07	12.71	0.01	2.355	0.98	0.59	0.9	99.1	0.0	-0.35	0.65	0.83	2.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8423	1133	13	0	0	0	0	logfile
✔	8EYR	28693	2023-04-22	2022-10-28	4.0	4.25	4.10	4.0	0.005	0.75	0.0	0.05	17.46	0.01	2.099	23.63	0.27	11.5	88.3	0.2	-2.62	0.86	0.82	—	4.0	0.003	0.68	0.0	0.05	17.64	0.00	2.154	19.25	0.67	9.4	90.5	0.2	-2.08	0.42	0.86	0.81	—	13635	1705	4	0	0	0	0	logfile
✔	7V0M	26944	2023-04-20	2022-05-10	2.7	2.46	2.64	2.5	0.003	0.56	0.0	0.04	18.10	0.00	2.240	3.55	1.29	3.3	96.7	0.0	0.52	0.56	0.89	4.90	2.5	0.003	0.49	0.0	0.04	18.18	0.00	2.176	4.37	2.33	3.3	96.7	0.0	1.83	0.25	0.55	0.88	4.09	3724	483	4	0	0	60	0	logfile
✔	7TZo	26213	2023-04-21	2022-02-16	3.28	3.77	—	3.7	0.008	1.12	34.0	0.08	14.31	0.01	1.176	19.37	1.53	6.6	93.1	0.3	-1.06	0.68	0.74	0.94	3.7	0.003	0.67	0.0	0.04	16.58	0.00	2.177	8.88	0.23	4.6	95.3	0.1	0.81	1.49	0.73	0.83	1.04	57117	7481	8	0	0	0	0	logfile
✔	6LVD	0990	2023-04-28	2020-02-02	3.2	3.35	3.22	3.3	0.009	0.93	0.0	0.06	9.36	0.01	2.223	3.32	0.31	6.1	93.9	0.0	-3.48	0.80	0.87	4.98	3.3	0.004	0.59	0.0	0.04	13.44	0.00	2.087	7.39	0.10	4.6	95.4	0.0	-0.81	0.58	0.79	0.88	3.77	27628	3464	8	0	0	0	0	logfile
✔	8i1V	35123	2023-04-26	2023-01-13	2.6	3.00	2.59	3.0	0.005	0.62	0.0	0.04	13.20	0.00	2.058	7.77	0.04	3.2	96.8	0.0	-0.33	0.60	0.81	3.39	3.0	0.003	0.59	0.0	0.04	14.91	0.00	2.124	8.48	1.49	3.0	97.0	0.0	-0.02	0.54	0.61	0.89	3.11	23870	3127	14	0	0	0	0	logfile
✔	7VHK	31997	2023-04-27	2021-09-22	3.6	3.72	—	3.7	0.005	0.73	0.0	0.04	14.12	0.00	2.059	14.55	0.00	9.2	90.8	0.1	-4.61	0.69	0.76	2.30	3.7	0.003	0.62	0.0	0.04	15.75	0.00	2.160	9.77	0.36	4.9	95.1	0.0	-1.58	1.17	0.68	0.76	2.08	25191	3231	3	0	0	0	0	logfile
✔	7XHo	33197	2023-04-26	2022-04-09	3.29	3.57	3.30	3.5	0.004	0.91	2.0	0.05	17.66	0.00	1.860	19.54	0.78	6.7	93.0	0.3	-2.33	0.74	0.72	1.32	3.5	0.004	0.82	0.0	0.04	18.06	0.00	2.166	20.50	0.48	8.0	91.9	0.1	-1.03	1.38	0.76	0.78	1.37	22243	2876	17	0	0	0	0	logfile
✔	6T0U	10359	2023-04-23	2019-10-03	3.12	3.20	3.13	3.2	0.005	0.68	0.0	0.05	14.30	0.01	2.273	3.95	5.25	3.4	96.6	0.0	-3.41	0.68	0.86	3.55	3.2	0.004	0.56	0.0	0.04	15.71	0.00	2.107	7.80	0.27	3.6	96.4	0.0	0.30	0.59	0.68	0.88	2.91	14176	1695	4	23	0	0	0	logfile
✔	3JAU	6366	2023-04-22	2015-06-24	4.8	4.76	—	6.0	0.027	2.66	660.0	0.16	14.74	0.02	1.686	10.72	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	5.4	0.003	0.70	0.0	0.04	13.62	0.00	2.034	12.63	0.00	4.6	95.0	0.4	-1.07	1.45	0.24	0.57	—	114900	14700	180	0	0	0	0	logfile
✔	7LJ3	23388	2023-04-27	2021-01-28	2.9	2.92	—	3.4	0.005	0.72	0.0	0.04	17.12	0.00	1.041	27.61	3.30	3.6	96.0	0.4	0.29	0.10	0.23	-0.14	2.9	0.003	0.60	0.0	0.03	19.24	0.00	2.017	7.67	4.04	4.5	95.4	0.2	2.58	1.42	0.22	0.79	1.76	25714	2564	12	225	0	0	0	logfile
✔	8EMC	28244	2023-04-27	2022-09-27	3.6	4.48	3.74	3.5	0.004	0.73	0.0	0.04	13.02	0.00	1.997	13.13	0.01	4.7	95.0	0.3	0.35	0.87	0.80	1.42	3.5	0.003	0.62	0.0	0.04	14.48	0.00	2.088	13.88	0.18	4.7	95.1	0.2	0.88	1.27	0.91	0.83	1.46	73331	9328	14	0	0	0	0	logfile
✔	6N2D	9327	2023-04-20	2018-11-12	3.3	3.50	3.29	3.6	0.008	1.21	0.0	0.07	11.75	0.01	1.610	14.18	0.71	2.6	97.4	0.0	-2.81	0.61	0.78	1.68	3.5	0.005	0.82	0.0	0.05	16.12	0.01	2.115	19.61	1.41	2.2	97.8	0.0	1.77	0.63	0.61	0.80	1.08	7162	993	13	0	0	0	0	logfile
✔	6PBX	20294	2023-04-26	2019-06-14	4.0	4.12	—	4.0	0.006	0.83	0.0	0.05	14.04	0.01	2.264	6.03	0.00	3.8	96.2	0.0	-3.07	0.68	0.67	—	4.0	0.003	0.69	0.0	0.04	15.36	0.00	2.147	13.31	0.19	4.2	95.8	0.0	1.36	0.72	0.73	0.78	—	23028	3152	8	0	0	0	0	logfile
✔	7ZPK	14856	2023-04-27	2022-04-27	3.81	7.29	3.88	5.6	0.004	0.81	0.0	0.05	13.25	0.02	2.214	2.12	0.68	2.8	97.2	0.0	0.04	0.81	0.55	-0.44	4.1	0.004	0.67	0.0	0.04	15.75	0.01	1.886	22.41	0.38	4.9	95.1	0.0	0.42	2.37	0.86	0.73	-0.53	25935	1513	3	55	0	0	12760	logfile

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