Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KAL	22774	2021-12-02	2020-10-01	4.0	4.57	4.10	4.2	0.002	0.51	0.0	0.04	11.87	0.00	2.262	5.74	0.00	2.6	97.3	0.1	-0.72	0.63	0.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10789	1429	7	0	0	0	0	logfile
✔	7L0R	23101	2021-12-01	2020-12-12	4.2	4.12	4.05	4.0	0.007	1.37	2.0	0.08	13.58	0.01	2.106	10.15	1.05	6.6	93.4	0.0	-3.44	0.61	0.66	—	4.0	0.003	0.79	0.0	0.05	13.26	0.00	2.121	19.86	0.00	4.3	95.7	0.0	-0.22	3.46	0.62	0.74	—	6968	887	5	0	0	0	0	logfile
✔	7KAK	22773	2021-12-02	2020-10-01	3.9	4.59	4.06	4.2	0.003	0.54	0.0	0.04	11.57	0.00	2.246	6.34	0.00	2.9	97.1	0.0	-1.34	0.66	0.83	1.49	4.2	0.004	0.70	0.0	0.04	14.15	0.00	2.215	11.64	0.28	3.6	96.4	0.0	1.69	0.64	0.66	0.84	1.72	10437	1371	6	0	0	0	0	logfile
✔	7CWo	30485	2021-12-01	2020-08-29	3.9	4.25	—	4.1	0.007	1.04	0.0	0.06	9.37	0.01	2.262	9.56	0.28	8.4	91.6	0.0	-3.72	0.58	0.75	2.31	4.1	0.007	0.94	0.0	0.05	14.05	0.01	2.145	16.93	0.57	6.2	93.8	0.0	-2.40	1.73	0.58	0.74	1.45	3254	422	3	0	0	0	0	logfile
✔	7KAM	22775	2021-12-02	2020-10-01	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10916	1445	7	0	0	0	0	logfile
✔	6X93	22098	2021-12-01	2020-06-02	3.5	3.96	—	3.7	0.007	1.13	0.0	0.06	13.58	0.01	2.173	17.66	0.42	5.0	95.0	0.0	-3.25	0.70	0.61	1.85	3.7	0.012	1.54	1.0	0.05	15.49	0.00	1.980	18.82	0.21	7.5	92.5	0.0	-2.56	1.66	0.73	0.64	1.87	6846	1042	6	0	0	0	0	logfile
✔	6Z3Z	11067	2021-12-01	2020-05-22	3.19	3.90	—	3.6	0.003	0.62	0.0	0.04	13.78	0.00	2.198	8.80	0.31	6.4	93.6	0.0	-0.26	0.62	0.69	0.75	3.7	0.010	1.06	0.0	0.04	15.74	0.01	2.225	15.97	0.46	7.7	92.3	0.0	0.03	0.66	0.63	0.72	0.90	6115	769	2	0	0	0	0	logfile
✔	7BTX	30190	2021-12-02	2020-04-03	2.8	2.99	—	3.0	0.008	1.09	2.0	0.06	14.93	0.01	2.280	4.49	0.26	8.1	91.1	0.7	-4.94	0.68	0.86	4.33	3.0	0.003	0.67	0.0	0.04	16.81	0.01	2.178	8.68	2.03	8.2	91.5	0.2	-0.66	0.54	0.68	0.87	3.88	10168	1268	4	0	0	0	0	logfile
✔	6Z3Y	11066	2021-12-01	2020-05-22	3.51	3.78	3.53	3.6	0.002	0.52	0.0	0.04	11.75	0.00	2.269	9.16	1.68	5.6	94.4	0.0	0.09	0.59	0.70	0.69	3.6	0.004	0.89	0.0	0.05	15.16	0.01	2.094	17.35	0.61	8.7	91.3	0.0	-0.83	0.71	0.59	0.71	1.14	6131	771	2	0	0	0	0	logfile
✔	7KAR	22781	2021-12-02	2020-10-01	4.0	4.56	4.12	4.3	0.003	0.59	0.0	0.04	12.73	0.00	2.224	7.84	0.00	2.8	97.2	0.0	-1.41	0.66	0.83	—	4.3	0.003	0.65	0.0	0.04	14.59	0.00	2.156	9.64	0.09	2.2	97.8	0.0	1.79	0.53	0.67	0.84	—	10435	1341	6	0	0	0	0	logfile
✔	6XSS	22305	2021-12-01	2020-07-16	3.7	3.37	—	3.3	0.003	0.63	0.0	0.04	12.31	0.00	1.843	28.34	0.00	2.5	97.5	0.0	-0.32	0.74	0.78	0.04	3.3	0.015	1.65	1.0	0.04	17.18	0.01	2.065	21.16	0.36	1.6	98.4	0.0	2.61	1.33	0.75	0.80	0.22	8048	1040	4	0	0	0	0	logfile
✔	6XZQ	10665	2021-12-01	2020-02-05	3.6	4.18	3.53	3.7	0.005	0.64	0.0	0.04	15.64	0.01	1.924	5.93	1.26	5.0	95.0	0.0	-2.44	0.89	0.80	1.95	3.8	0.003	0.59	0.0	0.04	15.95	0.00	1.932	9.38	0.23	5.1	94.9	0.0	-0.42	0.77	0.90	0.82	1.84	56888	3492	8	19	0	0	28480	logfile
✔	6WYL	21968	2021-12-01	2020-05-13	3.9	3.99	—	4.0	0.012	0.91	0.0	0.05	11.33	0.01	2.237	3.66	0.00	2.7	97.3	0.0	-1.66	0.65	0.82	1.94	3.9	0.004	0.78	0.0	0.04	15.51	0.01	2.090	10.88	0.21	3.6	96.4	0.0	2.21	1.29	0.67	0.81	1.40	8847	1194	6	0	0	0	0	logfile
✔	7L0Q	23100	2021-12-01	2020-12-12	4.3	4.28	4.01	4.2	0.007	1.07	1.0	0.06	14.99	0.01	2.196	7.83	0.70	6.2	93.5	0.3	-3.51	0.62	0.68	—	4.2	0.005	0.81	0.0	0.05	14.03	0.01	2.118	20.44	0.12	6.2	93.7	0.1	-0.61	1.17	0.65	0.76	—	7891	1002	5	0	0	0	0	logfile
✔	7KXY	23067	2021-12-01	2020-12-05	4.4	4.55	4.44	4.5	0.004	0.82	0.0	0.05	15.13	0.01	2.197	19.23	7.18	26.0	69.8	4.2	-5.90	0.63	0.60	—	4.5	0.004	0.88	0.0	0.05	14.67	0.01	2.083	26.15	0.00	18.8	81.1	0.1	-4.97	0.60	0.64	0.62	—	9510	1181	2	0	0	0	0	logfile
✔	7KAo	22778	2021-12-02	2020-10-01	4.0	4.59	4.08	4.2	0.003	0.53	0.0	0.04	11.87	0.00	2.202	7.70	0.00	2.3	97.7	0.0	-1.25	0.65	0.84	—	4.2	0.007	0.80	0.0	0.04	14.15	0.00	2.105	14.51	0.45	3.8	96.2	0.0	1.16	1.25	0.66	0.85	—	10502	1349	6	0	0	0	0	logfile
✔	7KAH	22770	2021-12-02	2020-10-01	3.1	3.79	3.14	3.5	0.003	0.53	0.0	0.04	12.90	0.00	2.257	4.61	0.00	3.2	96.8	0.0	-1.32	0.69	0.86	2.50	3.5	0.003	0.58	0.0	0.04	14.66	0.00	2.172	5.59	0.54	3.0	97.0	0.0	1.88	1.26	0.69	0.87	1.89	10495	1349	6	0	0	0	0	logfile
✔	7JGF	22325	2021-12-01	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.51	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.8	0.002	0.48	0.0	0.04	13.28	0.00	2.151	52.23	0.41	5.2	94.8	0.0	1.10	0.63	0.41	0.45	—	4477	532	1	0	0	0	30	logfile
✔	6X2L	22011	2021-12-01	2020-05-20	2.85	2.95	—	2.9	0.009	0.96	0.0	0.06	13.68	0.01	2.078	2.99	0.00	2.5	97.5	0.0	-6.46	0.64	0.88	2.92	2.9	0.003	0.63	0.0	0.04	16.01	0.00	2.285	5.89	1.55	2.3	97.7	0.0	1.89	1.01	0.64	0.89	2.18	9396	1233	3	0	0	0	0	logfile
✔	7A8Z	11680	2021-12-01	2020-08-31	3.35	3.81	3.38	3.7	0.004	0.59	0.0	0.04	14.41	0.00	2.254	7.15	0.00	7.6	92.3	0.1	-1.49	0.68	0.75	3.00	3.8	0.003	0.56	0.0	0.04	15.66	0.00	2.302	6.55	0.47	5.9	94.0	0.1	-0.40	1.51	0.73	0.80	2.66	8402	1103	2	0	0	0	0	logfile

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