Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5LKH	4068	2022-12-19	2016-07-22	3.46	5.27	—	11.0	0.018	2.37	65.0	0.12	12.66	0.02	2.255	87.25	1.96	3.4	95.2	1.4	-0.27	0.38	0.17	-0.03	8.8	0.003	0.81	0.0	0.04	15.64	0.00	2.120	25.20	0.34	6.3	93.7	0.0	-0.80	2.12	0.50	0.56	0.41	37345	4740	5	0	0	0	0	logfile
✔	5LKi	4068	2022-12-11	2016-07-22	3.46	3.72	—	3.5	0.013	1.24	5.0	0.06	10.71	0.01	0.579	39.63	0.18	7.7	91.7	0.6	-4.39	0.65	0.79	2.37	3.5	0.003	0.82	0.0	0.04	15.10	0.00	2.086	15.11	0.39	6.9	92.7	0.4	0.29	0.82	0.63	0.80	1.58	55415	7135	5	0	0	0	0	logfile
✔	6H05	0108	2022-12-21	2018-07-06	2.9	3.15	—	3.5	0.016	1.09	0.0	0.07	9.74	0.01	0.426	17.81	0.00	8.5	91.5	0.0	-5.50	0.36	0.13	0.50	3.1	0.003	0.86	0.0	0.04	15.56	0.00	2.134	15.94	2.28	4.3	95.7	0.0	-1.34	1.63	0.58	0.47	0.65	44544	5664	24	0	0	0	0	logfile
✔	6R6B	4734	2022-12-12	2019-03-26	3.5	4.29	3.51	3.9	0.010	1.36	1.0	0.07	12.49	0.01	1.771	6.90	1.97	8.6	91.1	0.4	-5.15	0.70	0.70	2.25	3.9	0.004	1.06	0.0	0.05	15.95	0.01	2.118	18.58	0.79	7.1	92.8	0.1	-0.64	4.28	0.73	0.85	0.78	11416	1452	10	0	0	0	0	logfile
✔	6R69	4733	2022-12-12	2019-03-26	3.65	4.14	3.57	3.7	0.005	0.90	0.0	0.04	14.42	0.01	2.191	13.18	0.15	9.8	89.8	0.4	-3.99	0.75	0.76	0.73	3.8	0.004	0.92	0.0	0.05	16.02	0.01	2.115	14.84	0.65	7.8	92.2	0.1	0.12	0.94	0.77	0.83	0.91	12541	1629	10	0	0	0	0	logfile
✔	6GC7	4382	2022-12-11	2018-04-17	4.3	4.85	—	4.4	0.003	0.67	0.0	0.03	13.13	0.00	2.251	5.14	0.28	5.9	93.9	0.1	-4.27	0.76	0.61	—	4.4	0.008	0.74	0.0	0.04	15.49	0.01	1.966	30.02	0.00	9.7	90.2	0.1	-2.10	1.66	0.91	0.87	—	54410	1738	17	1901	0	0	0	logfile
✔	6GC0	4379	2022-12-16	2018-04-16	3.8	4.10	—	4.0	0.002	0.52	0.0	0.03	12.29	0.00	2.283	3.48	0.04	5.9	94.0	0.1	-4.24	0.72	0.66	1.32	4.0	0.006	0.76	0.0	0.04	15.57	0.01	1.975	24.10	1.72	10.4	89.6	0.1	-2.05	2.61	0.78	0.76	0.98	84138	2950	28	2848	0	0	0	logfile
✔	6GC6	4381	2022-12-12	2018-04-17	4.3	5.02	—	4.5	0.003	0.66	0.0	0.03	12.88	0.00	2.229	5.32	0.00	6.0	93.9	0.1	-3.94	0.74	0.57	—	4.5	0.009	0.73	0.0	0.04	15.64	0.00	1.990	29.10	0.00	9.6	90.4	0.0	-2.05	2.14	0.91	0.86	—	61404	2118	19	2092	0	0	0	logfile
✔	6N1R	9318	2022-12-21	2018-11-10	4.0	4.12	—	4.0	0.006	0.89	0.0	0.05	8.46	0.01	0.296	17.83	0.00	8.7	91.3	0.0	-2.90	0.80	0.71	—	4.0	0.004	0.76	0.0	0.05	12.80	0.00	2.118	17.37	0.48	7.1	92.9	0.0	0.31	1.68	0.83	0.78	—	46044	5796	12	0	0	0	0	logfile
✔	6CoZ	7545	2022-12-11	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.82	0.0	0.04	4.96	0.00	2.368	4.42	0.00	8.3	91.7	0.0	-1.63	1.58	0.82	0.77	—	1586	320	2	0	0	0	0	logfile
✔	6GBZ	4378	2022-12-16	2018-04-16	3.8	4.02	—	3.9	0.002	0.61	0.0	0.03	13.32	0.00	2.235	2.87	0.08	6.2	93.4	0.3	-4.24	0.72	0.67	1.01	3.9	0.005	0.72	0.0	0.04	15.83	0.01	1.983	19.65	1.04	10.8	89.1	0.1	-2.14	0.88	0.78	0.77	1.03	86401	3074	29	2908	0	0	0	logfile
✔	3J9P	6267	2022-12-13	2015-02-14	4.24	2.59	—	4.1	0.009	1.84	4.0	0.07	17.68	0.01	2.113	26.59	4.64	10.2	88.2	1.6	-3.58	0.73	0.78	—	4.2	0.003	1.08	0.0	0.04	13.94	0.00	2.147	16.50	0.00	8.3	91.0	0.7	-1.68	1.18	0.73	0.80	—	16952	2240	4	0	0	0	0	logfile
✔	6MRW	9214	2022-12-12	2018-10-15	4.3	4.76	—	4.3	0.006	0.98	0.0	0.04	10.35	0.01	2.080	4.61	0.41	2.1	97.9	0.0	-0.19	0.82	0.84	—	4.3	0.002	0.48	0.0	0.03	11.74	0.00	2.080	6.81	0.00	1.8	98.2	0.0	6.05	1.27	0.83	0.86	—	31346	3990	14	0	0	0	0	logfile
✔	6QG2	4545	2022-12-20	2019-01-10	4.55	4.79	4.48	4.5	0.009	1.44	35.0	0.09	18.65	0.00	1.236	4.72	7.64	13.2	83.4	3.4	-1.88	0.58	0.37	—	4.5	0.003	0.75	0.0	0.05	15.45	0.00	2.115	17.30	0.00	10.4	88.9	0.7	-1.95	1.68	0.70	0.58	—	38664	4961	16	0	0	0	0	logfile
✔	6PYH	20524	2022-12-13	2019-07-29	4.3	4.52	—	4.3	0.016	1.05	0.0	0.05	14.64	0.01	2.079	28.82	0.55	18.2	81.6	0.2	-5.21	0.84	0.83	—	4.3	0.003	0.66	0.0	0.04	13.76	0.00	2.006	12.96	0.07	8.1	91.9	0.0	-2.26	0.65	0.84	0.82	—	13187	1648	3	0	0	0	0	logfile
✔	6MRT	9212	2022-12-11	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.46	0.0	0.03	15.43	0.00	2.226	3.14	1.29	0.5	99.5	0.0	5.71	3.08	0.73	0.86	2.07	26868	3420	12	0	0	0	0	logfile
✔	6GC4	4380	2022-12-15	2018-04-17	4.3	4.54	—	4.3	0.003	0.77	0.0	0.03	13.73	0.01	2.252	4.16	0.39	6.9	92.9	0.2	-3.77	0.70	0.60	—	4.3	0.007	0.79	0.0	0.04	15.51	0.01	1.989	26.90	0.04	11.4	88.5	0.1	-2.30	0.97	0.81	0.79	—	80165	2836	26	2705	0	0	0	logfile
✔	6PUo	20478	2022-12-20	2019-07-18	3.3	3.94	—	3.6	0.007	0.90	0.0	0.05	13.53	0.01	2.305	5.35	0.35	7.4	92.5	0.2	-3.47	0.74	0.80	2.49	3.5	0.002	0.63	0.0	0.04	14.16	0.00	2.223	7.26	0.29	6.1	93.8	0.1	0.30	1.07	0.77	0.86	2.40	37804	5208	4	0	0	0	0	logfile
✔	6MB3	9065	2022-12-13	2018-08-29	3.37	3.47	—	3.4	0.020	1.75	0.0	0.09	9.45	0.01	2.273	0.34	0.00	3.7	96.1	0.1	0.34	0.73	0.86	4.52	3.4	0.003	0.68	0.0	0.04	14.06	0.00	2.187	7.60	0.12	5.6	94.3	0.0	-0.18	1.27	0.74	0.87	3.73	16423	2178	19	0	0	0	0	logfile
✔	6QV6	4645	2022-12-11	2019-03-01	3.63	4.00	3.46	4.0	0.010	1.31	0.0	0.07	11.64	0.01	2.282	4.71	1.04	8.0	91.6	0.4	-4.57	0.63	0.82	2.87	4.0	0.003	0.77	0.0	0.04	15.29	0.01	2.038	12.57	0.39	6.3	93.7	0.0	0.95	0.66	0.62	0.81	1.94	7208	938	2	0	0	0	0	logfile

• ← previous
• Page 2 of 443
• next →