Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6XN7	22269	2022-07-05	2020-07-02	3.47	3.24	—	3.3	0.007	1.10	0.0	0.06	15.52	0.01	2.236	5.65	0.09	7.1	92.9	0.0	-3.47	0.71	0.80	2.88	3.3	0.009	0.89	1.0	0.04	16.74	0.00	2.119	12.17	0.36	7.4	92.6	0.0	-1.17	0.38	0.72	0.82	2.24	22212	2580	12	74	0	0	0	logfile
✘	7LF6	23300	2022-07-03	2021-01-15	3.5	2.65	—	3.0	0.003	0.71	0.0	0.05	13.86	0.01	2.220	17.17	0.00	3.2	96.8	0.0	1.00	0.71	0.71	1.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6288	814	2	0	0	0	0	logfile
✔	7SCZ	25043	2022-07-05	2021-09-29	3.5	4.01	3.49	3.8	0.014	1.91	1.0	0.09	27.47	0.03	2.529	0.13	0.00	1.7	98.3	0.0	0.09	0.80	0.77	2.51	3.8	0.005	0.64	0.0	0.04	27.86	0.00	1.978	6.73	0.28	2.3	97.7	0.0	2.83	1.42	0.79	0.80	1.56	23205	850	11	294	0	0	10435	logfile
✔	7WHM	32504	2022-07-03	2021-12-31	2.7	2.86	—	2.8	0.006	0.64	0.0	0.05	13.85	0.00	2.155	6.35	0.00	3.1	96.9	0.0	0.15	0.43	0.87	4.68	2.8	0.005	0.56	0.0	0.05	15.99	0.00	2.246	5.78	0.74	2.5	97.5	0.0	1.40	1.11	0.40	0.84	3.83	9650	1214	1	0	0	0	0	logfile
✔	7WK2	32556	2022-07-05	2022-01-08	3.1	2.75	—	3.3	0.004	0.57	0.0	0.04	7.30	0.00	1.974	4.04	0.00	3.8	96.2	0.0	-2.33	0.66	0.57	1.89	3.3	0.003	0.71	0.0	0.05	14.60	0.00	1.947	10.34	0.32	2.7	97.3	0.0	-0.05	1.16	0.80	0.79	2.05	24879	3171	3	0	0	0	0	logfile
✔	7PXA	13695	2022-07-07	2021-10-08	2.8	2.56	—	2.8	0.002	0.42	0.0	0.04	9.39	0.00	2.147	3.68	1.14	1.5	98.5	0.0	2.60	0.76	0.84	2.86	2.8	0.008	0.77	0.0	0.05	15.39	0.01	2.064	5.79	3.14	2.9	97.1	0.0	1.69	1.45	0.78	0.87	3.03	46614	6187	35	0	0	0	0	logfile
✔	7Q5Q	13844	2022-07-07	2021-11-04	4.38	5.03	4.75	4.4	0.009	1.41	0.0	0.07	13.56	0.01	2.152	3.34	2.08	2.6	97.4	0.0	-1.58	0.90	0.88	—	4.4	0.004	0.68	0.0	0.04	12.65	0.00	2.222	14.56	0.00	2.5	97.5	0.0	1.77	0.82	0.90	0.88	—	42336	5472	24	0	0	0	0	logfile
✔	7TLB	25986	2022-07-05	2022-01-18	3.06	3.26	—	3.2	0.012	1.74	1.0	0.09	13.14	0.01	2.531	0.24	0.82	5.3	94.7	0.1	-1.00	0.54	0.56	2.31	3.2	0.004	0.64	0.0	0.04	15.14	0.01	2.099	7.34	0.16	3.1	96.9	0.0	0.14	1.51	0.76	0.85	2.84	22806	2916	3	0	0	0	0	logfile
✔	7F9W	31499	2022-07-03	2021-07-05	3.2	3.72	—	3.6	0.005	0.68	0.0	0.04	12.99	0.00	2.114	9.28	0.63	4.5	95.5	0.0	0.24	0.76	0.80	3.40	3.6	0.004	0.72	0.0	0.04	15.64	0.01	2.143	9.52	0.85	4.1	95.9	0.0	0.32	0.50	0.77	0.81	2.81	4217	547	3	0	0	0	0	logfile
✔	7WK8	32562	2022-07-03	2022-01-08	3.61	2.50	—	2.3	0.002	0.52	0.0	0.04	6.81	0.00	2.270	7.76	0.00	4.5	95.3	0.2	-1.21	0.77	0.74	4.09	2.3	0.003	0.62	0.0	0.04	13.24	0.01	2.165	10.55	0.00	3.0	96.9	0.2	0.47	1.28	0.79	0.78	3.76	3982	516	4	0	0	0	0	logfile
✔	6XN3	22266	2022-07-05	2020-07-02	3.0	3.45	—	3.4	0.007	1.14	0.0	0.06	14.74	0.01	2.211	6.52	0.04	7.4	92.6	0.0	-3.29	0.63	0.80	2.49	3.4	0.010	0.99	1.0	0.05	17.24	0.01	2.066	15.64	2.38	7.1	92.8	0.0	-1.31	0.51	0.61	0.81	2.25	22049	2568	12	71	0	0	0	logfile
✘	7o5B	12734	2022-07-10	2021-04-08	3.33	4.51	—	3.5	0.006	0.98	3.0	0.05	16.90	0.01	1.185	5.18	0.15	2.1	97.7	0.2	-2.61	0.87	0.80	1.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	150422	6001	57	4884	0	0	0	logfile
✔	7TLD	25988	2022-07-05	2022-01-18	2.89	3.35	—	3.3	0.013	1.80	0.0	0.09	13.31	0.01	2.524	0.24	0.94	5.2	94.6	0.2	-1.25	0.33	0.48	3.75	3.3	0.004	0.62	0.0	0.04	15.31	0.00	2.158	6.25	1.52	3.4	96.6	0.0	0.12	0.60	0.60	0.77	2.98	22812	2916	3	0	0	0	0	logfile
✔	7TLC	25987	2022-07-05	2022-01-18	2.83	3.28	—	3.2	0.013	1.82	3.0	0.10	13.37	0.02	2.518	0.24	1.54	5.3	94.5	0.2	-1.18	0.34	0.47	4.12	3.2	0.004	0.64	0.0	0.04	15.71	0.01	2.106	6.51	2.20	3.6	96.4	0.0	0.00	0.60	0.46	0.65	3.48	23058	2948	3	0	0	0	0	logfile
✔	7QFQ	13947	2022-07-03	2021-12-06	3.6	3.83	3.58	4.0	0.002	0.54	0.0	0.04	12.93	0.00	2.177	8.31	0.00	5.4	94.6	0.0	-0.70	0.65	0.70	1.50	4.0	0.003	0.58	0.0	0.04	14.95	0.00	2.156	8.68	0.34	6.2	93.8	0.0	-0.97	0.37	0.67	0.72	1.37	10659	1291	1	0	0	0	0	logfile
✔	7RKX	24506	2022-07-03	2021-07-22	3.1	3.43	3.11	3.4	0.005	0.71	0.0	0.05	12.43	0.01	2.137	4.25	0.00	3.9	96.1	0.0	-0.60	0.72	0.88	4.25	3.4	0.004	0.62	0.0	0.04	14.57	0.00	2.136	4.55	0.23	3.4	96.5	0.1	0.56	0.34	0.67	0.87	3.36	8559	1126	5	0	0	0	0	logfile
✔	7RKN	24501	2022-07-03	2021-07-22	3.6	3.80	—	3.7	0.004	0.97	0.0	0.06	12.67	0.01	2.206	8.22	0.00	4.7	95.3	0.0	-2.17	0.74	0.81	2.81	3.6	0.003	0.64	0.0	0.04	14.89	0.00	2.136	13.54	0.49	3.7	96.3	0.0	-1.44	0.42	0.74	0.82	2.35	9393	1201	6	0	0	0	0	logfile
✔	7WK3	32557	2022-07-05	2022-01-08	3.4	2.86	—	3.4	0.004	0.56	0.0	0.04	7.18	0.00	1.998	3.85	0.00	3.6	96.3	0.0	-2.17	0.65	0.57	1.77	3.3	0.004	0.71	0.0	0.04	14.43	0.00	2.154	10.63	0.36	2.9	97.1	0.0	-0.15	1.12	0.79	0.79	1.85	24805	3162	3	0	0	0	0	logfile
✔	7ND2	12273	2022-07-04	2021-01-29	4.0	4.21	—	4.0	0.011	1.65	4.0	0.09	13.92	0.01	2.172	12.05	0.22	5.0	94.7	0.3	-0.95	0.85	0.73	—	4.0	0.003	0.75	0.0	0.04	15.91	0.01	2.161	18.86	0.44	4.6	95.2	0.2	-0.26	0.65	0.85	0.74	—	16824	2204	8	0	0	0	0	logfile
✔	7VFG	31952	2022-07-05	2021-09-13	3.87	3.19	3.86	3.6	0.007	0.79	0.0	0.05	13.86	0.01	2.182	3.86	0.45	3.6	96.4	0.0	-1.24	0.76	0.77	1.95	3.5	0.004	0.70	0.0	0.05	15.57	0.00	2.148	7.90	0.17	3.5	96.5	0.0	-0.27	1.80	0.76	0.77	2.36	25044	3162	6	0	0	0	0	logfile

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