Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6T0W	10361	2023-11-15	2019-10-03	3.18	3.27	3.23	3.2	0.008	0.80	0.0	0.05	14.46	0.01	2.251	4.31	6.26	5.6	94.3	0.1	-3.70	0.72	0.85	3.43	3.2	0.004	0.59	0.0	0.04	15.20	0.00	2.186	6.03	0.18	3.3	96.7	0.0	-0.02	0.53	0.73	0.86	3.28	10556	1268	4	25	0	0	0	logfile
✔	8G6K	29772	2023-11-14	2023-02-15	3.6	3.71	3.52	3.4	0.002	0.48	0.0	0.04	4.19	0.00	2.523	0.20	0.00	2.7	97.3	0.0	1.65	0.54	0.71	—	3.5	0.003	0.60	0.0	0.04	4.50	0.00	2.284	2.64	0.00	6.7	93.3	0.0	0.05	1.47	0.54	0.74	—	9388	1379	7	0	0	0	2576	logfile
✔	6oFJ	20047	2023-11-15	2019-03-30	4.5	5.60	3.27	7.8	0.007	0.96	0.0	0.05	15.74	0.01	2.135	3.69	0.00	7.1	92.9	0.0	-4.36	0.48	0.33	—	7.8	0.002	0.58	0.0	0.04	14.03	0.00	2.002	10.00	0.00	8.7	91.3	0.0	-1.93	1.22	0.56	0.54	—	10310	650	2	0	0	0	5142	logfile
✔	5MBV	3460	2023-11-18	2016-11-08	3.8	4.14	—	3.8	0.002	0.51	0.0	0.04	10.21	0.00	2.172	7.06	0.74	4.7	95.2	0.1	-3.37	0.87	0.81	0.98	3.8	0.004	0.71	0.0	0.04	13.50	0.00	2.114	12.19	0.23	3.9	96.0	0.0	1.12	0.89	0.88	0.83	1.41	24118	3014	5	0	0	0	0	logfile
✔	7ToE	26030	2023-11-16	2022-01-24	3.0	3.29	—	3.3	0.003	0.59	0.0	0.04	14.04	0.00	2.201	8.94	0.12	3.9	96.0	0.1	-0.13	0.72	0.83	3.59	3.3	0.004	0.62	0.0	0.04	16.98	0.00	2.138	10.14	1.10	4.0	96.0	0.0	-0.24	0.48	0.74	0.87	3.05	15100	1868	4	0	0	0	0	logfile
✔	7EZH	31387	2023-11-14	2021-06-01	3.2	2.28	—	2.1	0.004	0.68	1.0	0.05	12.75	0.01	2.278	2.69	0.74	4.7	95.2	0.1	-1.38	0.73	0.72	2.97	2.1	0.003	0.69	0.0	0.04	15.50	0.00	2.128	12.18	0.64	2.7	97.3	0.0	0.92	1.61	0.75	0.76	2.13	8838	1150	6	0	0	0	0	logfile
✔	7NPU	12521	2023-11-17	2021-02-28	4.48	4.74	4.43	3.8	0.008	1.19	0.0	0.06	11.87	0.01	2.086	1.37	0.37	1.8	98.1	0.1	-0.61	0.66	0.68	—	3.8	0.003	0.60	0.0	0.04	12.55	0.00	1.902	8.02	0.00	2.8	97.2	0.0	1.44	3.28	0.69	0.76	—	126727	8230	24	0	0	0	64397	logfile
✔	7PDG	13337	2023-11-14	2021-08-05	4.3	4.51	—	3.1	0.005	0.82	0.0	0.05	14.59	0.00	2.161	16.17	0.00	5.2	94.8	0.0	-0.49	0.58	0.72	—	3.1	0.003	0.73	0.0	0.04	14.74	0.00	2.173	12.63	0.00	4.3	95.7	0.0	0.21	0.88	0.58	0.72	—	7642	970	2	0	0	0	0	logfile
✔	7RZ9	24755	2023-11-19	2021-08-27	4.15	3.58	—	4.1	0.007	0.98	0.0	0.05	10.41	0.01	2.264	3.46	0.26	5.6	94.4	0.0	-5.15	0.68	0.80	—	4.1	0.003	0.60	0.0	0.04	13.04	0.00	2.174	8.74	0.00	3.5	96.5	0.0	0.04	1.16	0.69	0.78	—	27934	3550	4	0	0	0	0	logfile
✘	6R93	4767	2023-11-18	2019-04-02	4.0	4.29	—	4.1	0.010	1.48	2.0	0.10	29.24	0.01	1.600	2.04	0.00	2.5	97.0	0.5	0.30	0.78	0.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22961	775	10	290	0	0	10123	logfile
✔	8FYF	29572	2023-11-15	2023-01-26	3.4	3.26	3.38	3.4	0.003	0.58	0.0	0.04	14.09	0.00	2.218	5.61	0.14	2.7	97.3	0.0	2.89	0.57	0.83	1.72	3.3	0.003	0.52	0.0	0.04	14.55	0.00	2.209	5.68	0.14	2.4	97.6	0.0	3.58	0.93	0.55	0.85	1.53	13202	830	4	0	0	0	6754	logfile
✔	7UAG	26425	2023-11-14	2022-03-12	3.5	3.78	3.45	3.9	0.004	0.66	0.0	0.05	13.11	0.01	2.247	17.66	0.00	6.5	93.4	0.1	-1.43	0.65	0.67	1.75	3.8	0.005	0.70	0.0	0.05	15.39	0.01	2.060	17.86	0.37	6.8	93.2	0.0	-1.47	0.40	0.67	0.68	1.33	7588	938	2	0	0	0	0	logfile
✔	6E0G	8947	2023-11-15	2018-07-06	2.9	2.97	—	3.0	0.010	1.03	0.0	0.06	10.04	0.01	2.030	9.03	0.00	6.7	92.6	0.6	-3.72	0.62	0.71	2.41	3.0	0.004	0.72	0.0	0.05	14.17	0.00	2.174	17.04	2.54	6.6	93.4	0.0	-0.92	1.63	0.61	0.73	2.57	12910	1650	10	0	0	0	0	logfile
✔	7o0Z	12684	2023-11-14	2021-03-28	3.7	4.56	—	4.1	0.007	1.08	0.0	0.06	15.07	0.01	2.319	5.56	0.44	6.4	93.6	0.0	-5.96	0.74	0.79	1.62	4.1	0.003	0.76	0.0	0.04	15.96	0.00	2.141	14.44	0.00	5.7	94.3	0.0	-0.01	1.19	0.74	0.80	1.31	8730	1142	4	0	0	0	0	logfile
✔	7TXi	26158	2023-11-20	2022-02-09	3.5	3.86	—	3.7	0.008	0.99	0.0	0.05	12.09	0.01	0.409	13.97	0.00	5.7	93.8	0.5	1.39	0.53	0.82	2.16	3.6	0.003	0.80	0.0	0.05	15.08	0.01	2.129	11.75	0.22	6.5	93.0	0.5	0.91	1.29	0.54	0.83	2.34	28660	3920	20	0	0	0	0	logfile
✔	7QLA	14066	2023-11-14	2021-12-20	3.85	3.91	3.77	3.9	0.003	0.62	0.0	0.04	13.83	0.00	2.117	13.19	0.00	6.4	93.6	0.0	-1.33	0.72	0.76	1.18	3.8	0.003	0.76	0.0	0.04	15.73	0.00	2.136	14.14	0.41	5.3	94.7	0.0	-0.81	0.52	0.73	0.76	1.64	6837	874	2	0	0	0	0	logfile
✔	5J8V	8073	2023-11-18	2016-04-08	4.9	4.81	—	4.7	0.024	2.67	214.0	0.16	10.17	0.01	1.145	73.68	28.71	6.2	86.5	7.3	2.50	0.71	0.67	—	4.7	0.003	0.96	4.0	0.04	9.37	0.00	2.173	6.74	0.32	9.5	88.8	1.7	0.19	0.81	0.75	0.74	—	73616	13812	4	0	0	0	0	logfile
✔	7W6K	32328	2023-11-13	2021-12-01	3.5	4.56	3.58	4.1	0.007	1.13	4.0	0.07	14.61	0.01	2.337	47.37	2.01	7.1	92.9	0.0	-3.58	0.66	0.76	1.46	4.2	0.003	0.76	0.0	0.04	17.14	0.00	2.213	13.20	0.72	4.6	95.4	0.0	1.07	3.50	0.63	0.76	1.00	6468	820	2	0	0	0	0	logfile
✔	6X8T	22095	2023-11-19	2020-06-01	2.9	2.95	2.71	2.9	0.007	0.68	0.0	0.05	12.90	0.01	1.483	6.41	0.41	5.4	94.6	0.0	-0.76	0.86	0.88	4.43	2.9	0.002	0.50	0.0	0.04	15.63	0.00	2.225	4.94	0.70	5.0	95.0	0.0	0.24	3.98	0.86	0.89	4.12	133440	16800	60	0	0	0	0	logfile
✔	8ooA	17008	2023-11-14	2023-04-04	3.18	1.83	3.09	2.8	0.008	1.08	0.0	0.06	28.16	0.01	2.299	5.05	0.00	1.5	98.5	0.0	-2.10	0.75	0.76	3.22	2.8	0.003	0.57	0.0	0.03	28.73	0.00	2.121	7.38	0.45	1.9	98.1	0.0	2.31	1.02	0.77	0.76	2.64	8405	529	8	204	0	0	0	logfile

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