Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6X9o	22106	2022-05-14	2020-06-03	2.6	2.80	2.63	2.7	0.006	0.81	1.0	0.05	15.46	0.00	1.953	15.30	0.56	6.3	93.4	0.3	-2.11	0.79	0.86	2.75	2.7	0.004	0.66	0.0	0.04	17.12	0.00	2.090	9.96	1.67	4.4	95.4	0.2	1.65	1.04	0.78	0.88	2.51	20899	2669	2	0	0	0	0	logfile
✔	6XJV	22215	2022-05-16	2020-06-24	4.17	4.32	—	4.1	0.006	1.01	0.0	0.06	10.81	0.01	2.238	4.38	0.27	5.0	94.9	0.2	-3.26	0.71	0.75	—	4.1	0.003	0.69	0.0	0.04	13.09	0.00	2.150	13.16	0.00	4.7	95.3	0.1	0.32	1.32	0.72	0.79	—	29921	3649	20	0	0	0	0	logfile
✔	6WW2	21927	2022-05-12	2020-05-07	3.7	4.24	—	4.0	0.010	1.08	0.0	0.06	14.27	0.01	2.240	5.79	0.00	10.3	89.6	0.1	-2.34	0.68	0.81	1.89	4.0	0.003	0.71	0.0	0.04	15.48	0.00	2.111	10.66	0.12	6.7	93.2	0.1	-0.81	0.45	0.68	0.80	1.42	7594	982	4	0	0	0	0	logfile
✔	6SKi	10225	2022-05-12	2019-08-15	2.6	2.97	2.57	2.9	0.004	0.72	0.0	0.04	16.20	0.00	2.210	8.64	1.29	1.6	98.4	0.0	-0.80	0.63	0.83	4.83	2.9	0.003	0.55	0.0	0.04	16.67	0.00	2.267	7.50	1.94	3.1	96.9	0.0	0.90	0.51	0.63	0.84	4.48	4434	569	2	0	0	0	0	logfile
✔	6SJL	10218	2022-05-14	2019-08-13	2.6	3.00	2.64	2.9	0.013	0.87	0.0	0.05	14.60	0.01	1.985	13.14	0.05	5.7	94.1	0.2	-2.82	0.70	0.83	5.22	2.9	0.007	0.83	0.0	0.05	16.74	0.00	1.806	11.86	1.64	5.2	94.8	0.0	-0.57	1.14	0.71	0.85	4.26	19459	2537	6	0	0	0	0	logfile
✔	6X0V	21985	2022-05-12	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.46	0.0	0.04	13.09	0.00	2.230	19.17	0.00	6.0	94.0	0.0	2.59	1.22	0.40	0.75	—	1384	211	4	0	0	0	62	logfile
✔	6TU3	10586	2022-05-18	2020-01-02	2.7	2.82	2.74	2.8	0.006	0.81	0.0	0.05	16.10	0.01	1.264	9.35	8.29	5.8	94.2	0.0	-2.57	0.76	0.83	2.83	2.8	0.006	0.78	0.0	0.05	17.67	0.01	2.068	7.13	5.59	4.9	95.1	0.0	-0.38	0.57	0.77	0.85	2.79	47002	6158	28	0	0	0	0	logfile
✔	6ZXJ	11522	2022-05-17	2020-07-29	3.5	3.86	—	3.8	0.016	1.31	3.0	0.07	12.15	0.01	2.048	18.91	0.26	8.3	91.1	0.6	-3.10	0.69	0.79	2.28	3.8	0.003	0.82	0.0	0.05	14.82	0.00	2.036	12.08	0.41	3.8	96.2	0.0	-0.10	0.63	0.67	0.77	1.87	38244	5099	9	0	0	0	0	logfile
✔	6ZXK	11523	2022-05-17	2020-07-29	3.8	4.20	—	4.0	0.011	1.21	2.0	0.07	12.01	0.01	1.950	21.02	0.34	7.9	91.7	0.4	-2.91	0.70	0.76	1.72	4.0	0.005	0.85	0.0	0.05	15.10	0.00	2.140	14.00	0.49	4.7	95.2	0.0	-0.30	1.30	0.69	0.76	1.50	42292	5772	10	0	0	0	0	logfile
✔	6WDN	21642	2022-05-13	2020-04-01	3.2	4.00	—	3.8	0.005	0.74	2.0	0.05	15.07	0.01	2.166	14.93	0.52	7.1	92.9	0.0	-5.36	0.74	0.82	1.98	3.8	0.003	0.76	1.0	0.04	17.04	0.00	2.073	12.27	0.15	5.1	94.9	0.0	-1.07	0.62	0.74	0.82	1.88	12612	1540	10	0	0	0	0	logfile
✔	6VQU	21357	2022-05-14	2020-02-05	3.88	4.99	3.94	4.1	0.007	0.94	0.0	0.06	14.62	0.01	2.276	5.25	1.70	3.4	96.6	0.0	-2.26	0.73	0.86	0.46	4.1	0.004	0.76	0.0	0.04	14.93	0.00	2.146	14.46	0.21	2.4	97.6	0.0	1.83	1.06	0.73	0.88	0.06	9156	1178	2	0	0	0	0	logfile
✔	6UTF	20877	2022-05-18	2019-10-29	3.4	4.04	3.76	4.0	0.009	1.28	0.0	0.07	10.41	0.01	2.036	7.47	0.70	5.7	93.9	0.5	-3.27	0.75	0.77	1.47	4.0	0.004	0.95	0.0	0.05	16.75	0.01	2.055	17.46	0.84	6.4	93.5	0.1	-0.69	2.96	0.79	0.83	1.04	46494	6013	28	0	0	0	0	logfile
✔	6ZXL	11524	2022-05-17	2020-07-29	4.2	4.71	—	4.5	0.017	1.38	0.0	0.07	11.91	0.01	1.897	33.19	0.10	8.0	91.6	0.4	-2.81	0.75	0.77	—	4.5	0.003	0.74	0.0	0.05	12.37	0.00	2.068	14.48	0.00	4.7	95.3	0.0	-0.52	0.74	0.74	0.76	—	42172	5772	10	0	0	0	0	logfile
✔	6RRS	4989	2022-05-16	2019-05-20	3.9	4.30	4.41	3.8	0.013	2.10	0.0	0.00	2.04	0.01	2.364	0.79	0.00	3.9	95.3	0.8	-0.85	0.56	0.64	—	3.8	0.004	0.88	0.0	0.00	7.55	0.00	2.175	1.89	0.00	14.6	85.4	0.0	-1.44	2.05	0.80	0.71	—	93060	23220	180	0	0	0	0	logfile
✔	6VoA	21259	2022-05-15	2020-01-30	4.0	4.24	—	4.1	0.004	0.83	8.0	0.06	14.09	0.00	1.107	13.97	1.57	8.8	90.7	0.5	-3.28	0.69	0.58	—	4.1	0.007	0.80	0.0	0.04	16.17	0.00	2.188	14.25	0.67	7.9	92.1	0.1	-1.17	2.40	0.77	0.69	—	26824	3958	9	0	0	0	0	logfile
✔	6YLX	10841	2022-05-14	2020-04-07	3.9	3.78	3.86	3.8	0.019	1.57	1.0	0.08	17.82	0.01	1.989	6.59	0.65	3.4	96.6	0.0	-3.91	0.81	0.81	1.40	3.7	0.004	0.78	0.0	0.04	17.37	0.01	2.027	17.36	0.54	7.9	92.0	0.1	-1.51	0.66	0.81	0.82	1.18	118882	7493	47	2757	0	0	0	logfile
✔	6SK0	10219	2022-05-12	2019-08-14	2.3	2.30	2.11	2.2	0.008	0.74	0.0	0.05	15.85	0.00	2.202	9.23	0.97	3.3	96.7	0.0	-1.30	0.70	0.83	6.89	2.2	0.005	0.72	0.0	0.05	17.22	0.00	2.164	10.52	0.65	4.5	95.5	0.0	-1.28	1.50	0.80	0.90	6.82	5826	792	3	0	0	0	0	logfile
✔	6WU3	21904	2022-05-13	2020-05-04	3.16	3.62	3.40	3.5	0.008	0.60	0.0	0.04	15.89	0.00	2.057	9.10	6.27	8.4	91.6	0.0	-3.62	0.61	0.85	2.96	3.6	0.004	0.58	0.0	0.03	15.93	0.00	2.035	8.73	0.57	6.0	94.0	0.0	1.00	1.85	0.60	0.87	2.53	13610	890	2	0	0	0	6936	logfile
✔	6X0L	21978	2022-05-12	2020-05-16	3.9	3.69	—	3.6	0.005	0.85	0.0	0.05	18.72	0.00	2.067	21.49	0.13	5.0	95.0	0.0	-1.57	0.59	0.67	1.05	3.6	0.008	1.00	0.0	0.04	20.57	0.00	2.153	19.77	0.38	4.6	95.4	0.0	-0.12	0.72	0.60	0.68	1.23	8037	894	7	40	0	0	0	logfile
✔	6WZ5	21970	2022-05-13	2020-05-13	2.2	2.36	—	2.2	0.008	0.69	0.0	0.04	28.82	0.00	2.253	4.77	0.93	2.2	97.8	0.0	0.00	0.75	0.71	2.93	2.2	0.005	0.62	0.0	0.04	29.34	0.00	2.154	5.80	0.77	1.8	98.2	0.0	2.64	0.89	0.87	0.89	3.82	12443	774	10	306	0	0	0	logfile

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