Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7CAE	30328	2021-06-02	2020-06-08	3.44	3.81	—	3.7	0.005	0.88	2.0	0.05	14.47	0.00	1.985	13.46	0.43	10.1	89.7	0.2	-5.42	0.73	0.83	2.26	3.7	0.006	0.80	0.0	0.05	16.27	0.01	2.177	11.53	0.57	10.5	89.5	0.0	-2.52	0.48	0.73	0.85	1.79	13365	1763	5	0	0	0	0	logfile
✔	7KiY	22890	2021-06-03	2020-10-25	2.92	3.47	3.11	3.3	0.008	0.93	6.0	0.05	14.30	0.01	1.366	8.85	0.85	15.7	83.6	0.8	-4.17	0.80	0.82	2.33	3.3	0.003	0.76	0.0	0.04	16.60	0.01	2.154	7.18	1.47	13.8	86.1	0.1	-0.73	1.39	0.81	0.86	1.75	19870	2376	3	0	0	0	0	logfile
✔	7L2Z	23146	2021-06-05	2020-12-17	3.4	3.78	—	3.7	0.002	0.51	1.0	0.05	12.49	0.00	1.866	2.67	0.63	3.6	96.4	0.0	-2.91	0.74	0.75	1.52	3.7	0.003	0.62	0.0	0.04	14.12	0.00	1.867	6.56	0.12	6.2	93.8	0.0	-0.95	0.83	0.78	0.82	2.22	59631	3866	6	0	0	0	29676	logfile
✔	7BoJ	30130	2021-06-05	2020-03-19	2.5	2.54	2.38	2.5	0.007	0.92	0.0	0.06	12.86	0.01	2.271	3.34	0.00	2.4	97.6	0.0	-2.48	0.76	0.86	4.26	2.5	0.004	0.62	0.0	0.04	15.62	0.00	2.148	7.51	2.35	1.8	98.2	0.0	1.34	1.16	0.77	0.87	4.19	123525	16165	61	0	0	0	0	logfile
✔	7LD0	23278	2021-06-04	2021-01-12	3.1	2.33	3.20	1.9	0.006	0.65	0.0	0.04	13.28	0.01	2.229	8.80	0.00	6.1	93.9	0.0	-2.06	0.76	0.75	1.84	2.0	0.005	0.79	0.0	0.04	17.17	0.01	2.000	11.45	0.41	5.0	95.0	0.0	-0.64	0.62	0.77	0.77	0.97	36976	4720	8	0	0	0	0	logfile
✔	7K19	22622	2021-06-03	2020-09-07	4.3	4.44	—	4.3	0.006	1.10	1.0	0.06	17.53	0.01	2.038	8.49	0.65	12.7	87.0	0.3	-4.91	0.79	0.77	—	4.3	0.003	0.72	0.0	0.04	16.05	0.00	2.136	11.14	0.03	10.6	89.4	0.0	-1.24	0.68	0.78	0.75	—	29158	3569	4	48	0	0	0	logfile
✘	7K1B	22623	2021-06-03	2020-09-07	4.3	4.45	—	4.3	0.005	1.05	0.0	0.06	17.36	0.01	2.268	7.62	0.55	12.2	87.5	0.3	-4.94	0.79	0.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29321	3589	4	48	0	0	0	logfile
✔	7K1J	22624	2021-06-04	2020-09-07	3.9	3.96	—	3.9	0.010	1.24	0.0	0.07	17.63	0.01	2.066	7.79	1.09	14.5	85.0	0.5	-5.24	0.68	0.71	1.17	3.9	0.004	0.78	0.0	0.04	18.28	0.01	2.064	11.62	0.27	10.7	89.3	0.0	-1.98	1.76	0.68	0.71	0.75	38040	4600	7	74	0	0	0	logfile
✔	7K1K	22625	2021-06-04	2020-09-07	4.1	4.21	—	4.1	0.008	1.12	0.0	0.06	17.45	0.01	2.224	7.18	0.91	14.0	85.5	0.4	-5.07	0.73	0.74	—	4.1	0.003	0.72	0.0	0.04	16.12	0.01	2.086	11.09	0.00	11.8	88.1	0.1	-1.64	1.34	0.72	0.72	—	38243	4620	7	74	0	0	0	logfile
✔	7K1N	22626	2021-06-04	2020-09-08	3.9	4.03	—	3.9	0.007	1.06	2.0	0.06	16.96	0.01	2.179	6.04	0.78	13.2	86.4	0.4	-4.97	0.75	0.78	1.02	3.9	0.003	0.70	0.0	0.04	17.94	0.01	2.119	9.72	0.33	10.9	89.1	0.0	-1.48	0.57	0.75	0.77	0.66	39521	4779	7	74	0	0	0	logfile
✔	7KPV	22989	2021-06-02	2020-11-12	3.8	3.88	3.87	3.9	0.005	0.90	1.0	0.05	17.41	0.01	2.193	6.40	17.46	9.4	90.6	0.0	-4.37	0.66	0.78	1.90	3.9	0.004	0.71	0.0	0.04	17.05	0.01	2.198	9.34	0.49	8.2	91.8	0.0	-0.77	1.70	0.69	0.81	1.66	16449	2010	4	0	0	0	0	logfile
✔	7K0Y	22618	2021-06-04	2020-09-06	3.7	3.80	—	3.7	0.009	1.18	2.0	0.06	17.54	0.01	1.890	6.88	1.27	14.9	84.6	0.5	-5.42	0.74	0.76	1.42	3.7	0.006	0.82	0.0	0.04	18.22	0.01	1.586	10.59	0.14	10.1	89.8	0.1	-1.80	0.52	0.73	0.75	0.83	39835	4814	7	74	0	0	0	logfile
✔	7JSE	22451	2021-06-02	2020-08-14	4.6	5.13	—	4.2	0.001	0.38	0.0	0.02	10.51	0.00	2.425	0.00	0.00	11.4	88.0	0.6	-2.68	0.79	0.51	—	3.8	0.007	1.10	0.0	0.09	14.72	0.00	2.167	9.64	0.00	19.6	80.4	0.0	-2.55	2.76	0.68	0.67	—	13288	3168	24	32	0	0	0	logfile
✔	7CAD	30327	2021-06-02	2020-06-08	3.41	3.74	—	3.7	0.004	0.72	0.0	0.05	13.11	0.00	2.196	11.28	0.57	7.6	92.3	0.2	-4.35	0.75	0.84	2.98	3.7	0.003	0.68	0.0	0.04	15.17	0.01	2.198	9.90	0.47	5.1	94.9	0.0	-1.24	0.45	0.74	0.83	2.17	10026	1318	4	0	0	0	0	logfile
✔	7JFo	22308	2021-06-04	2020-07-17	2.13	2.12	—	2.1	0.022	1.67	2.0	0.11	12.07	0.01	2.198	6.67	1.23	3.9	96.1	0.0	-0.96	0.72	0.77	6.96	2.1	0.002	0.58	0.0	0.04	14.43	0.00	2.193	6.77	1.00	2.0	98.0	0.0	1.44	0.79	0.70	0.75	5.59	38958	4832	40	0	0	1198	0	logfile
✔	7CM5	30401	2021-06-04	2020-07-24	2.6	2.44	—	2.7	0.003	0.77	0.0	0.04	8.24	0.01	2.309	3.65	0.00	3.8	96.2	0.0	-3.70	0.75	0.77	1.89	2.6	0.005	0.67	0.0	0.04	15.65	0.01	2.187	7.35	1.76	3.5	96.5	0.0	1.44	1.39	0.80	0.86	2.40	38304	4888	8	0	0	0	0	logfile
✔	6X66	22071	2021-06-04	2020-05-27	4.2	6.75	—	8.4	0.016	1.73	27.0	0.08	14.04	0.01	2.162	21.62	0.38	12.3	87.7	0.0	-3.77	0.72	0.45	—	4.2	0.005	0.85	0.0	0.05	12.72	0.01	2.030	31.39	0.01	9.7	90.3	0.0	-2.39	5.25	0.80	0.77	—	109070	15548	117	0	0	0	0	logfile
✔	7AS4	11888	2021-06-05	2020-10-26	4.13	7.60	4.43	3.3	0.013	2.07	101.0	0.12	16.75	0.01	1.851	6.61	3.73	5.2	94.7	0.1	-1.41	0.79	0.59	—	3.3	0.003	0.68	0.0	0.04	14.52	0.00	2.086	15.98	0.02	4.3	95.7	0.0	0.41	0.95	0.87	0.74	—	120779	14997	47	14	0	0	0	logfile
✔	6LAR	0862	2021-06-03	2019-11-13	3.7	4.08	—	4.0	0.007	0.99	0.0	0.05	15.43	0.01	1.858	19.75	5.47	13.2	86.4	0.4	-4.82	0.65	0.76	0.98	4.0	0.005	0.87	0.0	0.04	16.25	0.01	2.086	14.51	1.00	10.1	89.8	0.1	-0.88	1.25	0.65	0.77	0.65	22448	3020	10	0	0	0	0	logfile
✔	6WUB	21909	2021-06-04	2020-05-04	3.2	2.63	—	2.9	0.009	0.97	0.0	0.05	16.48	0.01	2.029	6.52	18.19	13.4	86.2	0.4	-4.06	0.71	0.84	2.48	2.9	0.003	0.61	0.0	0.04	15.19	0.00	2.052	5.54	0.66	8.3	91.6	0.2	-1.16	1.17	0.72	0.86	2.01	33949	1253	12	1121	0	0	0	logfile

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