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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7VHJ | 31996 | 2023-04-27 | 2021-09-22 | 4.2 | 4.29 | — | 4.2 | 0.004 | 0.65 | 0.0 | 0.04 | 13.11 | 0.00 | 2.109 | 15.60 | 0.07 | 8.2 | 91.8 | 0.0 | -3.85 | 0.76 | 0.79 | — | 4.2 | 0.004 | 0.67 | 0.0 | 0.04 | 13.43 | 0.00 | 2.034 | 14.92 | 0.00 | 7.7 | 92.3 | 0.0 | -1.62 | 0.56 | 0.76 | 0.79 | — | 25353 | 3257 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TW1 | 26147 | 2023-04-26 | 2022-02-06 | 4.6 | 3.99 | — | 3.8 | 0.003 | 0.74 | 0.0 | 0.05 | 13.82 | 0.00 | 2.117 | 7.55 | 0.08 | 2.5 | 97.5 | 0.0 | -0.20 | 0.75 | 0.78 | — | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 13.96 | 0.00 | 2.179 | 12.52 | 0.04 | 4.1 | 95.9 | 0.0 | -0.25 | 1.17 | 0.75 | 0.79 | — | 23625 | 2993 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6W2E | 21526 | 2023-04-22 | 2020-03-05 | 4.4 | 4.45 | — | 4.4 | 0.006 | 1.04 | 1.0 | 0.06 | 10.30 | 0.01 | 1.618 | 7.99 | 0.68 | 4.5 | 95.1 | 0.4 | -2.37 | 0.33 | 0.53 | — | 4.4 | 0.004 | 0.82 | 0.0 | 0.05 | 13.54 | 0.01 | 2.053 | 16.84 | 0.07 | 6.5 | 93.4 | 0.1 | -1.20 | 1.37 | 0.40 | 0.75 | — | 62525 | 7943 | 19 | 0 | 0 | 0 | 0 | logfile |
✔ | 6M02 | 30028 | 2023-04-24 | 2020-02-19 | 3.2 | 3.49 | 3.90 | 3.9 | 0.006 | 0.96 | 0.0 | 0.05 | 16.35 | 0.01 | 2.263 | 6.38 | 1.64 | 7.0 | 93.0 | 0.0 | -6.29 | 0.60 | 0.70 | 1.57 | 3.9 | 0.003 | 0.69 | 0.0 | 0.04 | 17.04 | 0.00 | 2.284 | 10.32 | 0.52 | 4.1 | 95.9 | 0.0 | -1.79 | 1.20 | 0.61 | 0.71 | 1.40 | 18935 | 2345 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UN6 | 26614 | 2023-04-21 | 2022-04-09 | 3.3 | 3.43 | 3.19 | 3.6 | 0.004 | 0.60 | 0.0 | 0.04 | 13.87 | 0.00 | 1.879 | 11.49 | 0.00 | 5.0 | 95.0 | 0.0 | -0.89 | 0.49 | 0.57 | 2.11 | 3.6 | 0.003 | 0.64 | 0.0 | 0.04 | 16.12 | 0.00 | 2.100 | 11.27 | 0.20 | 5.0 | 95.0 | 0.0 | -0.07 | 0.70 | 0.57 | 0.70 | 1.64 | 9042 | 1118 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6VWK | 21419 | 2023-04-20 | 2020-02-20 | 3.3 | 3.56 | — | 3.5 | 0.010 | 1.30 | 4.0 | 0.07 | 12.71 | 0.01 | 2.355 | 0.98 | 0.59 | 0.9 | 99.1 | 0.0 | -0.35 | 0.65 | 0.83 | 2.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8423 | 1133 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EYR | 28693 | 2023-04-22 | 2022-10-28 | 4.0 | 4.25 | 4.10 | 4.0 | 0.005 | 0.75 | 0.0 | 0.05 | 17.46 | 0.01 | 2.099 | 23.63 | 0.27 | 11.5 | 88.3 | 0.2 | -2.62 | 0.86 | 0.82 | — | 4.0 | 0.003 | 0.68 | 0.0 | 0.05 | 17.64 | 0.00 | 2.154 | 19.25 | 0.67 | 9.4 | 90.5 | 0.2 | -2.08 | 0.42 | 0.86 | 0.81 | — | 13635 | 1705 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V0M | 26944 | 2023-04-20 | 2022-05-10 | 2.7 | 2.46 | 2.64 | 2.5 | 0.003 | 0.56 | 0.0 | 0.04 | 18.10 | 0.00 | 2.240 | 3.55 | 1.29 | 3.3 | 96.7 | 0.0 | 0.52 | 0.56 | 0.89 | 4.90 | 2.5 | 0.003 | 0.49 | 0.0 | 0.04 | 18.18 | 0.00 | 2.176 | 4.37 | 2.33 | 3.3 | 96.7 | 0.0 | 1.83 | 0.25 | 0.55 | 0.88 | 4.09 | 3724 | 483 | 4 | 0 | 0 | 60 | 0 | logfile |
✔ | 7TZo | 26213 | 2023-04-21 | 2022-02-16 | 3.28 | 3.77 | — | 3.7 | 0.008 | 1.12 | 34.0 | 0.08 | 14.31 | 0.01 | 1.176 | 19.37 | 1.53 | 6.6 | 93.1 | 0.3 | -1.06 | 0.68 | 0.74 | 0.94 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 16.58 | 0.00 | 2.177 | 8.88 | 0.23 | 4.6 | 95.3 | 0.1 | 0.81 | 1.49 | 0.73 | 0.83 | 1.04 | 57117 | 7481 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LVD | 0990 | 2023-04-28 | 2020-02-02 | 3.2 | 3.35 | 3.22 | 3.3 | 0.009 | 0.93 | 0.0 | 0.06 | 9.36 | 0.01 | 2.223 | 3.32 | 0.31 | 6.1 | 93.9 | 0.0 | -3.48 | 0.80 | 0.87 | 4.98 | 3.3 | 0.004 | 0.59 | 0.0 | 0.04 | 13.44 | 0.00 | 2.087 | 7.39 | 0.10 | 4.6 | 95.4 | 0.0 | -0.81 | 0.58 | 0.79 | 0.88 | 3.77 | 27628 | 3464 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 8i1V | 35123 | 2023-04-26 | 2023-01-13 | 2.6 | 3.00 | 2.59 | 3.0 | 0.005 | 0.62 | 0.0 | 0.04 | 13.20 | 0.00 | 2.058 | 7.77 | 0.04 | 3.2 | 96.8 | 0.0 | -0.33 | 0.60 | 0.81 | 3.39 | 3.0 | 0.003 | 0.59 | 0.0 | 0.04 | 14.91 | 0.00 | 2.124 | 8.48 | 1.49 | 3.0 | 97.0 | 0.0 | -0.02 | 0.54 | 0.61 | 0.89 | 3.11 | 23870 | 3127 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VHK | 31997 | 2023-04-27 | 2021-09-22 | 3.6 | 3.72 | — | 3.7 | 0.005 | 0.73 | 0.0 | 0.04 | 14.12 | 0.00 | 2.059 | 14.55 | 0.00 | 9.2 | 90.8 | 0.1 | -4.61 | 0.69 | 0.76 | 2.30 | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 15.75 | 0.00 | 2.160 | 9.77 | 0.36 | 4.9 | 95.1 | 0.0 | -1.58 | 1.17 | 0.68 | 0.76 | 2.08 | 25191 | 3231 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XHo | 33197 | 2023-04-26 | 2022-04-09 | 3.29 | 3.57 | 3.30 | 3.5 | 0.004 | 0.91 | 2.0 | 0.05 | 17.66 | 0.00 | 1.860 | 19.54 | 0.78 | 6.7 | 93.0 | 0.3 | -2.33 | 0.74 | 0.72 | 1.32 | 3.5 | 0.004 | 0.82 | 0.0 | 0.04 | 18.06 | 0.00 | 2.166 | 20.50 | 0.48 | 8.0 | 91.9 | 0.1 | -1.03 | 1.38 | 0.76 | 0.78 | 1.37 | 22243 | 2876 | 17 | 0 | 0 | 0 | 0 | logfile |
✔ | 6T0U | 10359 | 2023-04-23 | 2019-10-03 | 3.12 | 3.20 | 3.13 | 3.2 | 0.005 | 0.68 | 0.0 | 0.05 | 14.30 | 0.01 | 2.273 | 3.95 | 5.25 | 3.4 | 96.6 | 0.0 | -3.41 | 0.68 | 0.86 | 3.55 | 3.2 | 0.004 | 0.56 | 0.0 | 0.04 | 15.71 | 0.00 | 2.107 | 7.80 | 0.27 | 3.6 | 96.4 | 0.0 | 0.30 | 0.59 | 0.68 | 0.88 | 2.91 | 14176 | 1695 | 4 | 23 | 0 | 0 | 0 | logfile |
✔ | 3JAU | 6366 | 2023-04-22 | 2015-06-24 | 4.8 | 4.76 | — | 6.0 | 0.027 | 2.66 | 660.0 | 0.16 | 14.74 | 0.02 | 1.686 | 10.72 | 1.90 | 4.6 | 94.1 | 1.3 | -2.16 | 0.21 | 0.38 | — | 5.4 | 0.003 | 0.70 | 0.0 | 0.04 | 13.62 | 0.00 | 2.034 | 12.63 | 0.00 | 4.6 | 95.0 | 0.4 | -1.07 | 1.45 | 0.24 | 0.57 | — | 114900 | 14700 | 180 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LJ3 | 23388 | 2023-04-27 | 2021-01-28 | 2.9 | 2.92 | — | 3.4 | 0.005 | 0.72 | 0.0 | 0.04 | 17.12 | 0.00 | 1.041 | 27.61 | 3.30 | 3.6 | 96.0 | 0.4 | 0.29 | 0.10 | 0.23 | -0.14 | 2.9 | 0.003 | 0.60 | 0.0 | 0.03 | 19.24 | 0.00 | 2.017 | 7.67 | 4.04 | 4.5 | 95.4 | 0.2 | 2.58 | 1.42 | 0.22 | 0.79 | 1.76 | 25714 | 2564 | 12 | 225 | 0 | 0 | 0 | logfile |
✔ | 8EMC | 28244 | 2023-04-27 | 2022-09-27 | 3.6 | 4.48 | 3.74 | 3.5 | 0.004 | 0.73 | 0.0 | 0.04 | 13.02 | 0.00 | 1.997 | 13.13 | 0.01 | 4.7 | 95.0 | 0.3 | 0.35 | 0.87 | 0.80 | 1.42 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 14.48 | 0.00 | 2.088 | 13.88 | 0.18 | 4.7 | 95.1 | 0.2 | 0.88 | 1.27 | 0.91 | 0.83 | 1.46 | 73331 | 9328 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N2D | 9327 | 2023-04-20 | 2018-11-12 | 3.3 | 3.50 | 3.29 | 3.6 | 0.008 | 1.21 | 0.0 | 0.07 | 11.75 | 0.01 | 1.610 | 14.18 | 0.71 | 2.6 | 97.4 | 0.0 | -2.81 | 0.61 | 0.78 | 1.68 | 3.5 | 0.005 | 0.82 | 0.0 | 0.05 | 16.12 | 0.01 | 2.115 | 19.61 | 1.41 | 2.2 | 97.8 | 0.0 | 1.77 | 0.63 | 0.61 | 0.80 | 1.08 | 7162 | 993 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PBX | 20294 | 2023-04-26 | 2019-06-14 | 4.0 | 4.12 | — | 4.0 | 0.006 | 0.83 | 0.0 | 0.05 | 14.04 | 0.01 | 2.264 | 6.03 | 0.00 | 3.8 | 96.2 | 0.0 | -3.07 | 0.68 | 0.67 | — | 4.0 | 0.003 | 0.69 | 0.0 | 0.04 | 15.36 | 0.00 | 2.147 | 13.31 | 0.19 | 4.2 | 95.8 | 0.0 | 1.36 | 0.72 | 0.73 | 0.78 | — | 23028 | 3152 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZPK | 14856 | 2023-04-27 | 2022-04-27 | 3.81 | 7.29 | 3.88 | 5.6 | 0.004 | 0.81 | 0.0 | 0.05 | 13.25 | 0.02 | 2.214 | 2.12 | 0.68 | 2.8 | 97.2 | 0.0 | 0.04 | 0.81 | 0.55 | -0.44 | 4.1 | 0.004 | 0.67 | 0.0 | 0.04 | 15.75 | 0.01 | 1.886 | 22.41 | 0.38 | 4.9 | 95.1 | 0.0 | 0.42 | 2.37 | 0.86 | 0.73 | -0.53 | 25935 | 1513 | 3 | 55 | 0 | 0 | 12760 | logfile |