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Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5LKH | 4068 | 2022-12-19 | 2016-07-22 | 3.46 | 5.27 | — | 11.0 | 0.018 | 2.37 | 65.0 | 0.12 | 12.66 | 0.02 | 2.255 | 87.25 | 1.96 | 3.4 | 95.2 | 1.4 | -0.27 | 0.38 | 0.17 | -0.03 | 8.8 | 0.003 | 0.81 | 0.0 | 0.04 | 15.64 | 0.00 | 2.120 | 25.20 | 0.34 | 6.3 | 93.7 | 0.0 | -0.80 | 2.12 | 0.50 | 0.56 | 0.41 | 37345 | 4740 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LKi | 4068 | 2022-12-11 | 2016-07-22 | 3.46 | 3.72 | — | 3.5 | 0.013 | 1.24 | 5.0 | 0.06 | 10.71 | 0.01 | 0.579 | 39.63 | 0.18 | 7.7 | 91.7 | 0.6 | -4.39 | 0.65 | 0.79 | 2.37 | 3.5 | 0.003 | 0.82 | 0.0 | 0.04 | 15.10 | 0.00 | 2.086 | 15.11 | 0.39 | 6.9 | 92.7 | 0.4 | 0.29 | 0.82 | 0.63 | 0.80 | 1.58 | 55415 | 7135 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6H05 | 0108 | 2022-12-21 | 2018-07-06 | 2.9 | 3.15 | — | 3.5 | 0.016 | 1.09 | 0.0 | 0.07 | 9.74 | 0.01 | 0.426 | 17.81 | 0.00 | 8.5 | 91.5 | 0.0 | -5.50 | 0.36 | 0.13 | 0.50 | 3.1 | 0.003 | 0.86 | 0.0 | 0.04 | 15.56 | 0.00 | 2.134 | 15.94 | 2.28 | 4.3 | 95.7 | 0.0 | -1.34 | 1.63 | 0.58 | 0.47 | 0.65 | 44544 | 5664 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R6B | 4734 | 2022-12-12 | 2019-03-26 | 3.5 | 4.29 | 3.51 | 3.9 | 0.010 | 1.36 | 1.0 | 0.07 | 12.49 | 0.01 | 1.771 | 6.90 | 1.97 | 8.6 | 91.1 | 0.4 | -5.15 | 0.70 | 0.70 | 2.25 | 3.9 | 0.004 | 1.06 | 0.0 | 0.05 | 15.95 | 0.01 | 2.118 | 18.58 | 0.79 | 7.1 | 92.8 | 0.1 | -0.64 | 4.28 | 0.73 | 0.85 | 0.78 | 11416 | 1452 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R69 | 4733 | 2022-12-12 | 2019-03-26 | 3.65 | 4.14 | 3.57 | 3.7 | 0.005 | 0.90 | 0.0 | 0.04 | 14.42 | 0.01 | 2.191 | 13.18 | 0.15 | 9.8 | 89.8 | 0.4 | -3.99 | 0.75 | 0.76 | 0.73 | 3.8 | 0.004 | 0.92 | 0.0 | 0.05 | 16.02 | 0.01 | 2.115 | 14.84 | 0.65 | 7.8 | 92.2 | 0.1 | 0.12 | 0.94 | 0.77 | 0.83 | 0.91 | 12541 | 1629 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GC7 | 4382 | 2022-12-11 | 2018-04-17 | 4.3 | 4.85 | — | 4.4 | 0.003 | 0.67 | 0.0 | 0.03 | 13.13 | 0.00 | 2.251 | 5.14 | 0.28 | 5.9 | 93.9 | 0.1 | -4.27 | 0.76 | 0.61 | — | 4.4 | 0.008 | 0.74 | 0.0 | 0.04 | 15.49 | 0.01 | 1.966 | 30.02 | 0.00 | 9.7 | 90.2 | 0.1 | -2.10 | 1.66 | 0.91 | 0.87 | — | 54410 | 1738 | 17 | 1901 | 0 | 0 | 0 | logfile |
✔ | 6GC0 | 4379 | 2022-12-16 | 2018-04-16 | 3.8 | 4.10 | — | 4.0 | 0.002 | 0.52 | 0.0 | 0.03 | 12.29 | 0.00 | 2.283 | 3.48 | 0.04 | 5.9 | 94.0 | 0.1 | -4.24 | 0.72 | 0.66 | 1.32 | 4.0 | 0.006 | 0.76 | 0.0 | 0.04 | 15.57 | 0.01 | 1.975 | 24.10 | 1.72 | 10.4 | 89.6 | 0.1 | -2.05 | 2.61 | 0.78 | 0.76 | 0.98 | 84138 | 2950 | 28 | 2848 | 0 | 0 | 0 | logfile |
✔ | 6GC6 | 4381 | 2022-12-12 | 2018-04-17 | 4.3 | 5.02 | — | 4.5 | 0.003 | 0.66 | 0.0 | 0.03 | 12.88 | 0.00 | 2.229 | 5.32 | 0.00 | 6.0 | 93.9 | 0.1 | -3.94 | 0.74 | 0.57 | — | 4.5 | 0.009 | 0.73 | 0.0 | 0.04 | 15.64 | 0.00 | 1.990 | 29.10 | 0.00 | 9.6 | 90.4 | 0.0 | -2.05 | 2.14 | 0.91 | 0.86 | — | 61404 | 2118 | 19 | 2092 | 0 | 0 | 0 | logfile |
✔ | 6N1R | 9318 | 2022-12-21 | 2018-11-10 | 4.0 | 4.12 | — | 4.0 | 0.006 | 0.89 | 0.0 | 0.05 | 8.46 | 0.01 | 0.296 | 17.83 | 0.00 | 8.7 | 91.3 | 0.0 | -2.90 | 0.80 | 0.71 | — | 4.0 | 0.004 | 0.76 | 0.0 | 0.05 | 12.80 | 0.00 | 2.118 | 17.37 | 0.48 | 7.1 | 92.9 | 0.0 | 0.31 | 1.68 | 0.83 | 0.78 | — | 46044 | 5796 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CoZ | 7545 | 2022-12-11 | 2018-03-13 | 3.36 | 4.78 | — | 4.7 | 0.009 | 1.71 | 0.0 | 0.07 | 5.63 | 0.01 | 2.541 | 0.00 | 0.00 | 3.2 | 96.2 | 0.6 | -2.49 | 0.78 | 0.68 | — | 4.4 | 0.003 | 0.82 | 0.0 | 0.04 | 4.96 | 0.00 | 2.368 | 4.42 | 0.00 | 8.3 | 91.7 | 0.0 | -1.63 | 1.58 | 0.82 | 0.77 | — | 1586 | 320 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GBZ | 4378 | 2022-12-16 | 2018-04-16 | 3.8 | 4.02 | — | 3.9 | 0.002 | 0.61 | 0.0 | 0.03 | 13.32 | 0.00 | 2.235 | 2.87 | 0.08 | 6.2 | 93.4 | 0.3 | -4.24 | 0.72 | 0.67 | 1.01 | 3.9 | 0.005 | 0.72 | 0.0 | 0.04 | 15.83 | 0.01 | 1.983 | 19.65 | 1.04 | 10.8 | 89.1 | 0.1 | -2.14 | 0.88 | 0.78 | 0.77 | 1.03 | 86401 | 3074 | 29 | 2908 | 0 | 0 | 0 | logfile |
✔ | 3J9P | 6267 | 2022-12-13 | 2015-02-14 | 4.24 | 2.59 | — | 4.1 | 0.009 | 1.84 | 4.0 | 0.07 | 17.68 | 0.01 | 2.113 | 26.59 | 4.64 | 10.2 | 88.2 | 1.6 | -3.58 | 0.73 | 0.78 | — | 4.2 | 0.003 | 1.08 | 0.0 | 0.04 | 13.94 | 0.00 | 2.147 | 16.50 | 0.00 | 8.3 | 91.0 | 0.7 | -1.68 | 1.18 | 0.73 | 0.80 | — | 16952 | 2240 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MRW | 9214 | 2022-12-12 | 2018-10-15 | 4.3 | 4.76 | — | 4.3 | 0.006 | 0.98 | 0.0 | 0.04 | 10.35 | 0.01 | 2.080 | 4.61 | 0.41 | 2.1 | 97.9 | 0.0 | -0.19 | 0.82 | 0.84 | — | 4.3 | 0.002 | 0.48 | 0.0 | 0.03 | 11.74 | 0.00 | 2.080 | 6.81 | 0.00 | 1.8 | 98.2 | 0.0 | 6.05 | 1.27 | 0.83 | 0.86 | — | 31346 | 3990 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QG2 | 4545 | 2022-12-20 | 2019-01-10 | 4.55 | 4.79 | 4.48 | 4.5 | 0.009 | 1.44 | 35.0 | 0.09 | 18.65 | 0.00 | 1.236 | 4.72 | 7.64 | 13.2 | 83.4 | 3.4 | -1.88 | 0.58 | 0.37 | — | 4.5 | 0.003 | 0.75 | 0.0 | 0.05 | 15.45 | 0.00 | 2.115 | 17.30 | 0.00 | 10.4 | 88.9 | 0.7 | -1.95 | 1.68 | 0.70 | 0.58 | — | 38664 | 4961 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PYH | 20524 | 2022-12-13 | 2019-07-29 | 4.3 | 4.52 | — | 4.3 | 0.016 | 1.05 | 0.0 | 0.05 | 14.64 | 0.01 | 2.079 | 28.82 | 0.55 | 18.2 | 81.6 | 0.2 | -5.21 | 0.84 | 0.83 | — | 4.3 | 0.003 | 0.66 | 0.0 | 0.04 | 13.76 | 0.00 | 2.006 | 12.96 | 0.07 | 8.1 | 91.9 | 0.0 | -2.26 | 0.65 | 0.84 | 0.82 | — | 13187 | 1648 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MRT | 9212 | 2022-12-11 | 2018-10-15 | 2.8 | 2.93 | — | 2.9 | 0.008 | 0.90 | 0.0 | 0.05 | 10.67 | 0.01 | 2.260 | 1.61 | 0.82 | 1.1 | 98.9 | 0.0 | -1.27 | 0.70 | 0.84 | 3.77 | 2.9 | 0.003 | 0.46 | 0.0 | 0.03 | 15.43 | 0.00 | 2.226 | 3.14 | 1.29 | 0.5 | 99.5 | 0.0 | 5.71 | 3.08 | 0.73 | 0.86 | 2.07 | 26868 | 3420 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GC4 | 4380 | 2022-12-15 | 2018-04-17 | 4.3 | 4.54 | — | 4.3 | 0.003 | 0.77 | 0.0 | 0.03 | 13.73 | 0.01 | 2.252 | 4.16 | 0.39 | 6.9 | 92.9 | 0.2 | -3.77 | 0.70 | 0.60 | — | 4.3 | 0.007 | 0.79 | 0.0 | 0.04 | 15.51 | 0.01 | 1.989 | 26.90 | 0.04 | 11.4 | 88.5 | 0.1 | -2.30 | 0.97 | 0.81 | 0.79 | — | 80165 | 2836 | 26 | 2705 | 0 | 0 | 0 | logfile |
✔ | 6PUo | 20478 | 2022-12-20 | 2019-07-18 | 3.3 | 3.94 | — | 3.6 | 0.007 | 0.90 | 0.0 | 0.05 | 13.53 | 0.01 | 2.305 | 5.35 | 0.35 | 7.4 | 92.5 | 0.2 | -3.47 | 0.74 | 0.80 | 2.49 | 3.5 | 0.002 | 0.63 | 0.0 | 0.04 | 14.16 | 0.00 | 2.223 | 7.26 | 0.29 | 6.1 | 93.8 | 0.1 | 0.30 | 1.07 | 0.77 | 0.86 | 2.40 | 37804 | 5208 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MB3 | 9065 | 2022-12-13 | 2018-08-29 | 3.37 | 3.47 | — | 3.4 | 0.020 | 1.75 | 0.0 | 0.09 | 9.45 | 0.01 | 2.273 | 0.34 | 0.00 | 3.7 | 96.1 | 0.1 | 0.34 | 0.73 | 0.86 | 4.52 | 3.4 | 0.003 | 0.68 | 0.0 | 0.04 | 14.06 | 0.00 | 2.187 | 7.60 | 0.12 | 5.6 | 94.3 | 0.0 | -0.18 | 1.27 | 0.74 | 0.87 | 3.73 | 16423 | 2178 | 19 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QV6 | 4645 | 2022-12-11 | 2019-03-01 | 3.63 | 4.00 | 3.46 | 4.0 | 0.010 | 1.31 | 0.0 | 0.07 | 11.64 | 0.01 | 2.282 | 4.71 | 1.04 | 8.0 | 91.6 | 0.4 | -4.57 | 0.63 | 0.82 | 2.87 | 4.0 | 0.003 | 0.77 | 0.0 | 0.04 | 15.29 | 0.01 | 2.038 | 12.57 | 0.39 | 6.3 | 93.7 | 0.0 | 0.95 | 0.66 | 0.62 | 0.81 | 1.94 | 7208 | 938 | 2 | 0 | 0 | 0 | 0 | logfile |