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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6P4G | 20248 | 2022-12-15 | 2019-05-27 | 3.1 | 3.17 | 3.35 | 3.1 | 0.010 | 1.45 | 4.0 | 0.10 | 17.35 | 0.00 | 2.232 | 2.68 | 3.36 | 8.9 | 90.2 | 0.9 | -4.06 | 0.67 | 0.74 | 2.52 | 3.1 | 0.003 | 0.62 | 0.0 | 0.04 | 17.57 | 0.00 | 2.072 | 12.14 | 0.52 | 5.1 | 94.9 | 0.0 | -0.98 | 1.40 | 0.75 | 0.79 | 1.76 | 79374 | 4862 | 36 | 1900 | 0 | 0 | 0 | logfile |
✔ | 6RQL | 4984 | 2022-12-22 | 2019-05-16 | 2.9 | 2.93 | — | 3.0 | 0.009 | 1.09 | 1.0 | 0.06 | 12.93 | 0.01 | 1.977 | 6.69 | 0.74 | 8.3 | 91.7 | 0.0 | -4.74 | 0.60 | 0.67 | 2.47 | 2.9 | 0.003 | 0.65 | 0.0 | 0.04 | 17.08 | 0.00 | 2.121 | 10.07 | 3.10 | 5.8 | 94.2 | 0.0 | -0.68 | 1.62 | 0.70 | 0.75 | 2.02 | 51626 | 6246 | 20 | 84 | 0 | 0 | 0 | logfile |
✔ | 6MZV | 9308 | 2022-12-18 | 2018-11-05 | 3.4 | 3.57 | — | 3.5 | 0.006 | 0.73 | 0.0 | 0.05 | 8.48 | 0.01 | 2.343 | 7.32 | 0.34 | 3.4 | 96.6 | 0.0 | -4.51 | 0.79 | 0.86 | 4.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32833 | 4523 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N0G | 9315 | 2022-12-11 | 2018-11-07 | 3.6 | 3.75 | — | 3.7 | 0.008 | 0.87 | 0.0 | 0.06 | 8.90 | 0.01 | 2.232 | 6.49 | 0.18 | 2.7 | 97.3 | 0.0 | -3.39 | 0.81 | 0.85 | 3.75 | 3.7 | 0.004 | 0.69 | 0.0 | 0.04 | 15.03 | 0.00 | 2.090 | 14.56 | 0.40 | 2.3 | 97.7 | 0.0 | 0.08 | 2.43 | 0.81 | 0.86 | 2.81 | 55644 | 7545 | 57 | 0 | 0 | 0 | 0 | logfile |
✔ | 6i2N | 0333 | 2022-12-14 | 2018-11-01 | 3.3 | 3.45 | 3.33 | 3.4 | 0.007 | 0.97 | 0.0 | 0.05 | 11.09 | 0.01 | 2.323 | 2.82 | 0.00 | 6.0 | 94.0 | 0.0 | -3.81 | 0.75 | 0.79 | 2.55 | 3.4 | 0.003 | 0.58 | 0.0 | 0.04 | 14.79 | 0.00 | 2.134 | 8.41 | 0.39 | 4.5 | 95.5 | 0.0 | 0.62 | 2.27 | 0.77 | 0.84 | 1.84 | 18970 | 2352 | 14 | 21 | 0 | 0 | 0 | logfile |
✘ | 2XEA | 1730 | 2022-12-19 | 2010-05-12 | 4.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 63950 | 7700 | 100 | 150 | 0 | 0 | 0 | logfile |
✘ | 6G2H | 4343 | 2022-12-19 | 2018-03-23 | 4.6 | 4.69 | — | 4.5 | 0.013 | 1.94 | 46.0 | 0.11 | 13.54 | 0.01 | 1.921 | 14.14 | 2.29 | 8.3 | 91.0 | 0.7 | -3.04 | 0.79 | 0.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 103896 | 6454 | 6 | 0 | 0 | 0 | 51852 | logfile |
✔ | 5YFP | 6827 | 2022-12-18 | 2017-09-21 | 4.4 | 8.20 | — | 6.7 | 0.006 | 1.33 | 0.0 | 0.06 | 12.26 | 0.01 | 2.215 | 16.92 | 0.10 | 17.8 | 81.5 | 0.7 | -6.11 | 0.83 | 0.34 | — | 5.5 | 0.004 | 1.10 | 0.0 | 0.04 | 10.51 | 0.00 | 2.070 | 27.46 | 0.20 | 19.1 | 80.6 | 0.3 | -2.06 | 3.38 | 0.90 | 0.70 | — | 33096 | 5982 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UKP | 20808 | 2022-12-21 | 2019-10-05 | 3.81 | 3.28 | — | 4.1 | 0.008 | 0.87 | 0.0 | 0.05 | 14.31 | 0.01 | 2.034 | 4.81 | 0.95 | 10.5 | 89.5 | 0.0 | -4.02 | 0.72 | 0.75 | 1.47 | 4.1 | 0.006 | 0.68 | 0.0 | 0.04 | 16.13 | 0.01 | 1.876 | 11.26 | 0.63 | 12.6 | 87.4 | 0.0 | -1.52 | 1.94 | 0.74 | 0.76 | 1.54 | 41132 | 2569 | 7 | 0 | 0 | 0 | 20433 | logfile |
✔ | 6TJo | 10512 | 2022-12-11 | 2019-11-26 | 3.2 | 3.43 | 2.57 | 3.5 | 0.013 | 1.18 | 0.0 | 0.07 | 9.67 | 0.01 | 2.394 | 2.80 | 0.00 | 12.7 | 87.3 | 0.0 | -4.63 | 0.36 | 0.76 | 4.64 | 3.5 | 0.006 | 0.88 | 0.0 | 0.05 | 13.23 | 0.00 | 2.284 | 10.02 | 0.35 | 11.1 | 88.9 | 0.0 | -3.87 | 1.40 | 0.36 | 0.78 | 3.90 | 2439 | 321 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MWQ | 9277 | 2022-12-14 | 2018-10-30 | 3.0 | 3.33 | 2.89 | 3.1 | 0.001 | 0.36 | 0.0 | 0.04 | 4.66 | 0.00 | 2.321 | 4.19 | 0.13 | 11.0 | 87.5 | 1.5 | -4.81 | 0.54 | 0.39 | 0.22 | 3.1 | 0.003 | 0.70 | 0.0 | 0.04 | 13.25 | 0.00 | 2.183 | 8.34 | 1.48 | 3.6 | 96.1 | 0.2 | -1.09 | 1.31 | 0.77 | 0.86 | 1.70 | 22072 | 2873 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6iXH | 9747 | 2022-12-22 | 2018-12-10 | 4.0 | 4.11 | — | 4.0 | 0.010 | 1.11 | 0.0 | 0.06 | 15.28 | 0.01 | 2.228 | 6.69 | 0.60 | 7.6 | 92.0 | 0.4 | -4.89 | 0.84 | 0.87 | — | 4.0 | 0.008 | 0.93 | 0.0 | 0.05 | 16.70 | 0.00 | 2.099 | 17.20 | 1.00 | 7.7 | 92.1 | 0.1 | -2.23 | 0.64 | 0.85 | 0.87 | — | 52280 | 6785 | 25 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XWQ | 10635 | 2022-12-12 | 2020-01-24 | 3.41 | 4.27 | — | 4.0 | 0.003 | 0.61 | 0.0 | 0.04 | 13.42 | 0.00 | 2.171 | 10.53 | 0.00 | 3.5 | 96.2 | 0.2 | -2.80 | 0.73 | 0.80 | 0.22 | 4.0 | 0.003 | 0.78 | 0.0 | 0.04 | 15.52 | 0.00 | 2.168 | 13.94 | 0.20 | 4.0 | 96.0 | 0.0 | 1.04 | 1.17 | 0.72 | 0.84 | 0.66 | 9572 | 1281 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RQH | 4982 | 2022-12-22 | 2019-05-15 | 3.7 | 3.79 | — | 3.8 | 0.008 | 1.07 | 0.0 | 0.06 | 13.10 | 0.01 | 2.036 | 8.21 | 0.58 | 10.5 | 89.3 | 0.1 | -5.22 | 0.67 | 0.68 | 1.59 | 3.8 | 0.003 | 0.66 | 0.0 | 0.04 | 16.52 | 0.00 | 2.063 | 11.95 | 0.31 | 6.8 | 93.2 | 0.0 | -2.09 | 2.49 | 0.68 | 0.67 | 1.25 | 50851 | 6151 | 20 | 78 | 0 | 0 | 0 | logfile |
✔ | 6QXM | 4669 | 2022-12-19 | 2019-03-07 | 4.1 | 2.35 | — | 3.5 | 0.008 | 1.25 | 0.0 | 0.06 | 18.91 | 0.01 | 2.333 | 6.84 | 8.63 | 9.3 | 90.7 | 0.0 | -4.78 | 0.68 | 0.67 | — | 2.5 | 0.003 | 0.69 | 0.0 | 0.04 | 15.70 | 0.00 | 2.096 | 11.00 | 0.10 | 5.4 | 94.6 | 0.0 | -1.31 | 1.63 | 0.66 | 0.65 | — | 37164 | 4704 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UES | 20755 | 2022-12-11 | 2019-09-23 | 3.7 | 3.94 | — | 3.2 | 0.002 | 0.48 | 0.0 | 0.02 | 17.15 | 0.00 | 2.100 | 7.29 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.87 | 0.76 | — | 3.3 | 0.007 | 0.87 | 0.0 | 0.04 | 21.10 | 0.01 | 1.792 | 36.17 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.34 | 0.88 | 0.83 | — | 3842 | 0 | 1 | 119 | 0 | 0 | 1291 | logfile |
✘ | 6RKV | 4912 | 2022-12-18 | 2019-04-30 | 4.6 | 4.86 | — | 4.5 | 0.002 | 0.53 | 0.0 | 0.04 | 12.80 | 0.00 | 2.207 | 7.23 | 0.00 | 5.3 | 94.7 | 0.0 | -1.73 | 0.87 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15460 | 1784 | 8 | 64 | 0 | 0 | 0 | logfile |
✔ | 6DZP | 8937 | 2022-12-17 | 2018-07-05 | 3.42 | 3.50 | — | 3.4 | 0.012 | 1.08 | 1.0 | 0.06 | 15.97 | 0.01 | 1.028 | 6.77 | 0.60 | 9.8 | 89.2 | 1.0 | -4.67 | 0.79 | 0.82 | 3.24 | 3.4 | 0.003 | 0.58 | 0.0 | 0.03 | 16.06 | 0.00 | 2.067 | 9.06 | 0.57 | 5.8 | 94.2 | 0.0 | -1.17 | 3.28 | 0.82 | 0.86 | 2.38 | 98097 | 3715 | 34 | 3237 | 0 | 0 | 0 | logfile |
✔ | 6BLY | 7113 | 2022-12-12 | 2017-11-12 | 3.36 | 3.46 | — | 3.4 | 0.008 | 1.04 | 1.0 | 0.06 | 9.96 | 0.01 | 2.220 | 7.68 | 0.89 | 8.7 | 91.3 | 0.1 | -4.00 | 0.76 | 0.79 | 3.81 | 3.4 | 0.004 | 0.67 | 0.0 | 0.05 | 14.70 | 0.00 | 2.065 | 10.74 | 0.22 | 6.7 | 93.2 | 0.1 | -1.56 | 0.77 | 0.76 | 0.85 | 3.19 | 12263 | 1540 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6H5S | 0142 | 2022-12-21 | 2018-07-25 | 3.3 | 3.45 | — | 3.4 | 0.010 | 1.12 | 0.0 | 0.06 | 10.77 | 0.01 | 1.817 | 7.18 | 0.65 | 7.3 | 92.7 | 0.0 | -5.39 | 0.51 | 0.88 | 4.96 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 15.04 | 0.00 | 2.116 | 8.57 | 0.30 | 3.3 | 96.7 | 0.0 | -0.13 | 0.63 | 0.53 | 0.90 | 3.33 | 44700 | 5445 | 30 | 90 | 0 | 0 | 0 | logfile |