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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7YNA | 33956 | 2024-03-16 | 2022-07-30 | 3.64 | 3.83 | 3.70 | 3.7 | 0.007 | 0.73 | 0.0 | 0.05 | 16.96 | 0.01 | 2.143 | 10.32 | 0.60 | 16.1 | 83.8 | 0.1 | -4.75 | 0.84 | 0.88 | 2.34 | 3.7 | 0.002 | 0.58 | 0.0 | 0.04 | 17.60 | 0.00 | 2.143 | 7.07 | 1.71 | 10.2 | 89.8 | 0.0 | -2.04 | 0.38 | 0.84 | 0.86 | 2.07 | 13784 | 1536 | 3 | 63 | 0 | 0 | 0 | logfile |
✔ | 6LVE | 0991 | 2024-03-20 | 2020-02-02 | 3.1 | 3.20 | 3.06 | 3.1 | 0.011 | 1.00 | 0.0 | 0.06 | 9.73 | 0.01 | 2.239 | 3.13 | 0.42 | 6.2 | 93.8 | 0.0 | -3.25 | 0.79 | 0.87 | 5.51 | 3.1 | 0.003 | 0.59 | 0.0 | 0.04 | 13.83 | 0.00 | 2.140 | 7.37 | 1.60 | 4.3 | 95.7 | 0.0 | -0.69 | 1.21 | 0.80 | 0.89 | 4.35 | 27696 | 3480 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V1N | 31628 | 2024-03-17 | 2021-08-05 | 3.2 | 3.33 | — | 3.2 | 0.013 | 1.21 | 4.0 | 0.07 | 19.76 | 0.01 | 1.973 | 28.52 | 16.75 | 20.1 | 78.9 | 1.0 | -5.88 | 0.65 | 0.73 | 1.68 | 3.3 | 0.006 | 0.95 | 1.0 | 0.05 | 18.60 | 0.00 | 2.010 | 16.85 | 6.31 | 13.4 | 86.4 | 0.2 | -3.46 | 0.57 | 0.62 | 0.68 | 1.88 | 19156 | 2403 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZPK | 14856 | 2024-03-20 | 2022-04-27 | 3.81 | 7.29 | 3.88 | 5.6 | 0.004 | 0.81 | 0.0 | 0.05 | 15.30 | 0.02 | 2.214 | 2.12 | 0.68 | 2.8 | 97.2 | 0.0 | 0.04 | 0.81 | 0.55 | -0.44 | 4.0 | 0.003 | 0.67 | 0.0 | 0.04 | 17.36 | 0.00 | 1.910 | 21.18 | 2.63 | 5.7 | 94.3 | 0.0 | 0.37 | 2.36 | 0.86 | 0.72 | -0.64 | 25935 | 1513 | 3 | 55 | 0 | 0 | 12760 | logfile |
✔ | 7BRM | 30160 | 2024-03-18 | 2020-03-29 | 3.6 | 3.70 | 3.49 | 3.7 | 0.011 | 0.83 | 0.0 | 0.05 | 13.83 | 0.00 | 2.128 | 16.88 | 0.00 | 14.1 | 85.9 | 0.0 | -3.24 | 0.75 | 0.86 | 2.91 | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 15.42 | 0.00 | 2.123 | 14.11 | 2.19 | 9.1 | 90.9 | 0.0 | -0.35 | 0.56 | 0.74 | 0.84 | 2.26 | 20277 | 2619 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K5Y | 22684 | 2024-03-18 | 2020-09-17 | 2.76 | 3.18 | — | 3.1 | 0.004 | 0.65 | 0.0 | 0.04 | 27.04 | 0.00 | 2.108 | 7.00 | 0.00 | 1.4 | 98.6 | 0.0 | 1.74 | 0.77 | 0.81 | 4.49 | 3.1 | 0.003 | 0.57 | 0.0 | 0.03 | 27.25 | 0.00 | 2.153 | 6.67 | 2.56 | 2.0 | 98.0 | 0.0 | 2.08 | 1.13 | 0.78 | 0.85 | 3.92 | 18258 | 1297 | 13 | 394 | 0 | 0 | 0 | logfile |
✔ | 7WCo | 32426 | 2024-03-14 | 2021-12-20 | 3.8 | 3.89 | — | 3.9 | 0.008 | 1.13 | 0.0 | 0.06 | 11.02 | 0.01 | 0.599 | 4.59 | 0.53 | 14.2 | 85.8 | 0.0 | -5.43 | 0.56 | 0.85 | 2.78 | 3.9 | 0.004 | 0.76 | 0.0 | 0.05 | 15.23 | 0.01 | 2.190 | 10.00 | 4.97 | 9.6 | 90.4 | 0.0 | -2.96 | 1.54 | 0.56 | 0.85 | 2.86 | 8950 | 1195 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XLB | 22238 | 2024-03-15 | 2020-06-28 | 3.8 | 4.01 | — | 3.8 | 0.002 | 0.43 | 0.0 | 0.04 | 13.65 | 0.00 | 2.235 | 7.33 | 0.00 | 2.0 | 98.0 | 0.0 | -2.43 | 0.82 | 0.77 | 1.14 | 3.8 | 0.004 | 0.70 | 0.0 | 0.04 | 16.29 | 0.00 | 2.119 | 17.92 | 2.66 | 3.4 | 96.6 | 0.0 | -0.36 | 0.88 | 0.84 | 0.81 | 1.38 | 11180 | 1380 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PXM | 20521 | 2024-03-22 | 2019-07-26 | 2.1 | 2.33 | 2.32 | 2.4 | 0.008 | 0.71 | 0.0 | 0.04 | 16.03 | 0.00 | 2.392 | 1.60 | 0.00 | 0.6 | 99.4 | 0.0 | -3.44 | 0.79 | 0.89 | 5.35 | 2.3 | 0.002 | 0.44 | 0.0 | 0.03 | 17.97 | 0.00 | 2.283 | 4.03 | 0.78 | 1.8 | 98.2 | 0.0 | 5.29 | 1.48 | 0.79 | 0.90 | 3.81 | 32736 | 4080 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PBX | 20294 | 2024-03-19 | 2019-06-14 | 4.0 | 4.12 | — | 4.0 | 0.006 | 0.83 | 0.0 | 0.05 | 14.04 | 0.01 | 2.264 | 6.03 | 0.00 | 3.8 | 96.2 | 0.0 | -3.07 | 0.68 | 0.67 | — | 4.0 | 0.003 | 0.69 | 0.0 | 0.04 | 15.39 | 0.00 | 2.142 | 13.86 | 1.78 | 4.6 | 95.4 | 0.0 | 1.27 | 0.68 | 0.72 | 0.78 | — | 23028 | 3152 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LZJ | 23608 | 2024-03-17 | 2021-03-10 | 2.7 | 2.76 | 2.62 | 2.8 | 0.004 | 0.66 | 3.0 | 0.05 | 11.18 | 0.00 | 1.725 | 5.95 | 0.17 | 4.4 | 95.6 | 0.0 | -3.14 | 0.75 | 0.88 | 5.01 | 2.8 | 0.005 | 0.63 | 0.0 | 0.05 | 14.29 | 0.00 | 2.039 | 4.16 | 0.88 | 5.2 | 94.8 | 0.0 | -1.73 | 1.00 | 0.75 | 0.91 | 5.16 | 16590 | 2148 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K61 | 22686 | 2024-03-18 | 2020-09-17 | 2.85 | 3.27 | — | 3.1 | 0.007 | 0.67 | 0.0 | 0.04 | 27.10 | 0.00 | 2.130 | 5.97 | 0.00 | 1.5 | 98.5 | 0.0 | 1.15 | 0.85 | 0.86 | 4.35 | 3.1 | 0.004 | 0.58 | 0.0 | 0.03 | 27.57 | 0.00 | 2.131 | 7.47 | 2.60 | 2.1 | 97.9 | 0.0 | 1.87 | 0.33 | 0.86 | 0.88 | 3.64 | 17723 | 1222 | 12 | 394 | 0 | 0 | 0 | logfile |
✔ | 6WW2 | 21927 | 2024-03-11 | 2020-05-07 | 3.7 | 4.24 | — | 4.0 | 0.010 | 1.08 | 0.0 | 0.06 | 14.27 | 0.01 | 2.240 | 5.73 | 0.00 | 10.3 | 89.6 | 0.1 | -2.34 | 0.68 | 0.81 | 1.89 | 4.0 | 0.003 | 0.69 | 0.0 | 0.04 | 15.38 | 0.00 | 2.114 | 10.26 | 1.83 | 6.3 | 93.6 | 0.1 | -0.78 | 0.41 | 0.68 | 0.80 | 1.44 | 7594 | 982 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RKN | 24501 | 2024-03-14 | 2021-07-22 | 3.6 | 3.80 | — | 3.7 | 0.004 | 0.97 | 0.0 | 0.06 | 12.67 | 0.01 | 2.206 | 7.90 | 0.00 | 4.7 | 95.3 | 0.0 | -2.17 | 0.74 | 0.81 | 2.81 | 3.7 | 0.004 | 0.66 | 0.0 | 0.04 | 15.09 | 0.00 | 2.091 | 14.78 | 2.36 | 4.3 | 95.7 | 0.0 | -1.50 | 0.42 | 0.74 | 0.84 | 2.37 | 9393 | 1201 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6M02 | 30028 | 2024-03-17 | 2020-02-19 | 3.2 | 3.49 | 3.90 | 3.9 | 0.006 | 0.96 | 0.0 | 0.05 | 16.35 | 0.01 | 2.263 | 6.38 | 1.64 | 7.0 | 93.0 | 0.0 | -6.29 | 0.60 | 0.70 | 1.57 | 3.9 | 0.002 | 0.68 | 0.0 | 0.04 | 17.28 | 0.00 | 2.296 | 9.33 | 3.71 | 3.2 | 96.8 | 0.0 | -2.03 | 1.19 | 0.61 | 0.71 | 1.42 | 18935 | 2345 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LB8 | 23251 | 2024-03-15 | 2021-01-07 | 3.4 | 3.48 | — | 3.5 | 0.002 | 0.62 | 1.0 | 0.04 | 14.95 | 0.00 | 2.093 | 9.76 | 2.66 | 4.7 | 95.0 | 0.3 | -1.98 | 0.58 | 0.72 | 1.54 | 3.5 | 0.003 | 0.69 | 0.0 | 0.04 | 16.49 | 0.00 | 2.189 | 10.67 | 4.56 | 4.4 | 95.5 | 0.1 | 0.16 | 0.92 | 0.65 | 0.80 | 1.63 | 10439 | 1405 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TRC | 26085 | 2024-03-16 | 2022-01-28 | 3.3 | 3.10 | — | 3.3 | 0.003 | 0.64 | 0.0 | 0.04 | 17.83 | 0.00 | 2.121 | 8.21 | 0.21 | 4.2 | 95.8 | 0.0 | -1.82 | 0.66 | 0.74 | 2.50 | 3.3 | 0.003 | 0.62 | 0.0 | 0.04 | 19.12 | 0.00 | 2.127 | 9.36 | 3.04 | 4.9 | 95.1 | 0.0 | -1.12 | 0.47 | 0.68 | 0.77 | 1.76 | 14747 | 1599 | 10 | 92 | 0 | 0 | 0 | logfile |
✔ | 6DNC | 7970 | 2024-03-01 | 2018-06-06 | 3.7 | 6.35 | — | 4.1 | 0.008 | 1.14 | 2.0 | 0.09 | 22.18 | 0.01 | 1.764 | 6.82 | 1.11 | 13.5 | 84.5 | 2.0 | -4.52 | 0.87 | 0.73 | 0.26 | 4.1 | 0.006 | 0.77 | 0.0 | 0.04 | 23.73 | 0.01 | 1.921 | 38.39 | 2.65 | 10.6 | 89.3 | 0.1 | -1.80 | 3.09 | 0.96 | 0.91 | 0.33 | 152438 | 6520 | 59 | 4735 | 0 | 0 | 0 | logfile |
✔ | 8CXQ | 27067 | 2024-03-11 | 2022-05-22 | 2.3 | 3.31 | 2.77 | 3.1 | 0.002 | 0.46 | 0.0 | 0.04 | 10.31 | 0.00 | 2.008 | 5.61 | 0.22 | 3.9 | 96.0 | 0.1 | 0.30 | 0.78 | 0.80 | 2.66 | 3.1 | 0.005 | 0.55 | 0.0 | 0.04 | 12.05 | 0.00 | 1.888 | 7.09 | 0.82 | 5.1 | 94.9 | 0.0 | -0.20 | 0.38 | 0.73 | 0.76 | 2.60 | 56384 | 3666 | 6 | 0 | 0 | 0 | 27792 | logfile |
✔ | 8CYD | 27075 | 2024-03-20 | 2022-05-23 | 2.6 | 3.24 | 2.62 | 3.0 | 0.002 | 0.51 | 0.0 | 0.04 | 12.52 | 0.01 | 1.930 | 6.47 | 0.32 | 4.9 | 94.7 | 0.4 | 0.04 | 0.77 | 0.79 | 2.24 | 3.0 | 0.006 | 0.63 | 0.0 | 0.05 | 14.40 | 0.00 | 2.084 | 8.57 | 1.52 | 5.4 | 94.4 | 0.2 | -0.11 | 1.16 | 0.80 | 0.84 | 2.49 | 28454 | 3663 | 6 | 0 | 0 | 0 | 0 | logfile |