Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6P4G	20248	2022-12-15	2019-05-27	3.1	3.17	3.35	3.1	0.010	1.45	4.0	0.10	17.35	0.00	2.232	2.68	3.36	8.9	90.2	0.9	-4.06	0.67	0.74	2.52	3.1	0.003	0.62	0.0	0.04	17.57	0.00	2.072	12.14	0.52	5.1	94.9	0.0	-0.98	1.40	0.75	0.79	1.76	79374	4862	36	1900	0	0	0	logfile
✔	6RQL	4984	2022-12-22	2019-05-16	2.9	2.93	—	3.0	0.009	1.09	1.0	0.06	12.93	0.01	1.977	6.69	0.74	8.3	91.7	0.0	-4.74	0.60	0.67	2.47	2.9	0.003	0.65	0.0	0.04	17.08	0.00	2.121	10.07	3.10	5.8	94.2	0.0	-0.68	1.62	0.70	0.75	2.02	51626	6246	20	84	0	0	0	logfile
✔	6MZV	9308	2022-12-18	2018-11-05	3.4	3.57	—	3.5	0.006	0.73	0.0	0.05	8.48	0.01	2.343	7.32	0.34	3.4	96.6	0.0	-4.51	0.79	0.86	4.27	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32833	4523	42	0	0	0	0	logfile
✔	6N0G	9315	2022-12-11	2018-11-07	3.6	3.75	—	3.7	0.008	0.87	0.0	0.06	8.90	0.01	2.232	6.49	0.18	2.7	97.3	0.0	-3.39	0.81	0.85	3.75	3.7	0.004	0.69	0.0	0.04	15.03	0.00	2.090	14.56	0.40	2.3	97.7	0.0	0.08	2.43	0.81	0.86	2.81	55644	7545	57	0	0	0	0	logfile
✔	6i2N	0333	2022-12-14	2018-11-01	3.3	3.45	3.33	3.4	0.007	0.97	0.0	0.05	11.09	0.01	2.323	2.82	0.00	6.0	94.0	0.0	-3.81	0.75	0.79	2.55	3.4	0.003	0.58	0.0	0.04	14.79	0.00	2.134	8.41	0.39	4.5	95.5	0.0	0.62	2.27	0.77	0.84	1.84	18970	2352	14	21	0	0	0	logfile
✘	2XEA	1730	2022-12-19	2010-05-12	4.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	63950	7700	100	150	0	0	0	logfile
✘	6G2H	4343	2022-12-19	2018-03-23	4.6	4.69	—	4.5	0.013	1.94	46.0	0.11	13.54	0.01	1.921	14.14	2.29	8.3	91.0	0.7	-3.04	0.79	0.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	103896	6454	6	0	0	0	51852	logfile
✔	5YFP	6827	2022-12-18	2017-09-21	4.4	8.20	—	6.7	0.006	1.33	0.0	0.06	12.26	0.01	2.215	16.92	0.10	17.8	81.5	0.7	-6.11	0.83	0.34	—	5.5	0.004	1.10	0.0	0.04	10.51	0.00	2.070	27.46	0.20	19.1	80.6	0.3	-2.06	3.38	0.90	0.70	—	33096	5982	8	0	0	0	0	logfile
✔	6UKP	20808	2022-12-21	2019-10-05	3.81	3.28	—	4.1	0.008	0.87	0.0	0.05	14.31	0.01	2.034	4.81	0.95	10.5	89.5	0.0	-4.02	0.72	0.75	1.47	4.1	0.006	0.68	0.0	0.04	16.13	0.01	1.876	11.26	0.63	12.6	87.4	0.0	-1.52	1.94	0.74	0.76	1.54	41132	2569	7	0	0	0	20433	logfile
✔	6TJo	10512	2022-12-11	2019-11-26	3.2	3.43	2.57	3.5	0.013	1.18	0.0	0.07	9.67	0.01	2.394	2.80	0.00	12.7	87.3	0.0	-4.63	0.36	0.76	4.64	3.5	0.006	0.88	0.0	0.05	13.23	0.00	2.284	10.02	0.35	11.1	88.9	0.0	-3.87	1.40	0.36	0.78	3.90	2439	321	3	0	0	0	0	logfile
✔	6MWQ	9277	2022-12-14	2018-10-30	3.0	3.33	2.89	3.1	0.001	0.36	0.0	0.04	4.66	0.00	2.321	4.19	0.13	11.0	87.5	1.5	-4.81	0.54	0.39	0.22	3.1	0.003	0.70	0.0	0.04	13.25	0.00	2.183	8.34	1.48	3.6	96.1	0.2	-1.09	1.31	0.77	0.86	1.70	22072	2873	8	0	0	0	0	logfile
✔	6iXH	9747	2022-12-22	2018-12-10	4.0	4.11	—	4.0	0.010	1.11	0.0	0.06	15.28	0.01	2.228	6.69	0.60	7.6	92.0	0.4	-4.89	0.84	0.87	—	4.0	0.008	0.93	0.0	0.05	16.70	0.00	2.099	17.20	1.00	7.7	92.1	0.1	-2.23	0.64	0.85	0.87	—	52280	6785	25	0	0	0	0	logfile
✔	6XWQ	10635	2022-12-12	2020-01-24	3.41	4.27	—	4.0	0.003	0.61	0.0	0.04	13.42	0.00	2.171	10.53	0.00	3.5	96.2	0.2	-2.80	0.73	0.80	0.22	4.0	0.003	0.78	0.0	0.04	15.52	0.00	2.168	13.94	0.20	4.0	96.0	0.0	1.04	1.17	0.72	0.84	0.66	9572	1281	6	0	0	0	0	logfile
✔	6RQH	4982	2022-12-22	2019-05-15	3.7	3.79	—	3.8	0.008	1.07	0.0	0.06	13.10	0.01	2.036	8.21	0.58	10.5	89.3	0.1	-5.22	0.67	0.68	1.59	3.8	0.003	0.66	0.0	0.04	16.52	0.00	2.063	11.95	0.31	6.8	93.2	0.0	-2.09	2.49	0.68	0.67	1.25	50851	6151	20	78	0	0	0	logfile
✔	6QXM	4669	2022-12-19	2019-03-07	4.1	2.35	—	3.5	0.008	1.25	0.0	0.06	18.91	0.01	2.333	6.84	8.63	9.3	90.7	0.0	-4.78	0.68	0.67	—	2.5	0.003	0.69	0.0	0.04	15.70	0.00	2.096	11.00	0.10	5.4	94.6	0.0	-1.31	1.63	0.66	0.65	—	37164	4704	12	0	0	0	0	logfile
✔	6UES	20755	2022-12-11	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.10	0.01	1.792	36.17	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✘	6RKV	4912	2022-12-18	2019-04-30	4.6	4.86	—	4.5	0.002	0.53	0.0	0.04	12.80	0.00	2.207	7.23	0.00	5.3	94.7	0.0	-1.73	0.87	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15460	1784	8	64	0	0	0	logfile
✔	6DZP	8937	2022-12-17	2018-07-05	3.42	3.50	—	3.4	0.012	1.08	1.0	0.06	15.97	0.01	1.028	6.77	0.60	9.8	89.2	1.0	-4.67	0.79	0.82	3.24	3.4	0.003	0.58	0.0	0.03	16.06	0.00	2.067	9.06	0.57	5.8	94.2	0.0	-1.17	3.28	0.82	0.86	2.38	98097	3715	34	3237	0	0	0	logfile
✔	6BLY	7113	2022-12-12	2017-11-12	3.36	3.46	—	3.4	0.008	1.04	1.0	0.06	9.96	0.01	2.220	7.68	0.89	8.7	91.3	0.1	-4.00	0.76	0.79	3.81	3.4	0.004	0.67	0.0	0.05	14.70	0.00	2.065	10.74	0.22	6.7	93.2	0.1	-1.56	0.77	0.76	0.85	3.19	12263	1540	2	0	0	0	0	logfile
✔	6H5S	0142	2022-12-21	2018-07-25	3.3	3.45	—	3.4	0.010	1.12	0.0	0.06	10.77	0.01	1.817	7.18	0.65	7.3	92.7	0.0	-5.39	0.51	0.88	4.96	3.4	0.003	0.61	0.0	0.04	15.04	0.00	2.116	8.57	0.30	3.3	96.7	0.0	-0.13	0.63	0.53	0.90	3.33	44700	5445	30	90	0	0	0	logfile

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