Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5oYG	3861	2023-09-30	2017-09-08	4.06	4.29	4.02	4.1	0.007	1.27	10.0	0.10	12.53	0.01	2.282	5.95	1.98	6.9	93.1	0.0	-3.35	0.68	0.83	—	4.1	0.004	0.73	0.0	0.04	12.60	0.00	2.130	11.47	0.00	6.0	94.0	0.0	0.56	0.84	0.68	0.82	—	11596	1418	2	0	0	0	0	logfile
✔	7F1R	31423	2023-09-28	2021-06-09	3.0	3.21	—	3.2	0.002	0.48	0.0	0.04	11.21	0.00	2.224	8.07	0.46	1.5	98.5	0.0	-2.21	0.59	0.70	1.80	3.2	0.004	0.71	0.0	0.04	15.11	0.00	2.161	13.28	3.82	3.9	96.1	0.0	0.37	1.26	0.63	0.80	2.53	6621	894	4	0	0	0	0	logfile
✔	7KTU	23030	2023-09-28	2020-11-24	4.15	4.49	—	4.2	0.006	1.05	0.0	0.05	12.61	0.01	2.259	12.91	0.37	4.3	95.7	0.0	-5.35	0.81	0.79	—	4.2	0.003	0.79	0.0	0.04	13.23	0.00	2.086	18.78	0.00	3.4	96.6	0.0	-0.16	0.95	0.80	0.76	—	7577	995	1	0	0	0	0	logfile
✔	7Ji0	22341	2023-09-27	2020-07-21	2.95	3.30	3.08	3.2	0.003	0.48	0.0	0.04	12.97	0.00	2.233	3.94	5.91	4.5	95.5	0.0	-3.04	0.73	0.84	4.32	3.2	0.002	0.47	0.0	0.04	15.32	0.00	2.210	3.66	2.96	3.8	96.2	0.0	1.47	0.45	0.70	0.83	3.46	3556	432	4	0	0	0	0	logfile
✔	7EVP	31339	2023-09-28	2021-05-21	3.2	3.77	—	3.7	0.008	0.87	0.0	0.06	9.80	0.01	2.328	3.80	0.26	6.2	93.8	0.0	-5.27	0.64	0.77	3.74	3.6	0.003	0.62	0.0	0.05	13.72	0.00	2.294	8.36	0.40	5.6	94.4	0.0	-1.84	0.63	0.69	0.81	2.98	6616	840	4	0	0	0	0	logfile
✔	7WNQ	32633	2023-09-29	2022-01-19	2.7	2.91	2.72	3.0	0.012	1.20	6.0	0.07	9.17	0.01	2.155	1.80	0.63	3.6	96.4	0.0	-5.53	0.68	0.86	4.76	3.0	0.002	0.59	0.0	0.04	14.37	0.00	2.281	3.82	0.85	2.6	97.4	0.0	2.05	1.26	0.66	0.85	3.75	8847	1104	3	0	0	0	0	logfile
✔	7S1Z	24813	2023-09-28	2021-09-02	3.3	3.78	—	3.9	0.003	0.70	0.0	0.04	12.33	0.01	2.245	12.11	0.18	9.4	90.6	0.0	-0.47	0.30	0.50	0.99	3.9	0.004	0.63	0.0	0.04	14.70	0.00	2.159	10.34	0.18	9.3	90.7	0.0	-0.08	0.47	0.47	0.69	1.74	6416	944	2	0	0	0	0	logfile
✔	7L5J	23187	2023-09-30	2020-12-22	3.2	3.78	—	4.0	0.008	0.88	0.0	0.05	17.03	0.01	2.099	15.85	8.54	16.4	83.5	0.1	-5.48	0.60	0.73	1.80	3.9	0.003	0.71	0.0	0.04	15.80	0.00	2.213	9.23	0.41	8.2	91.8	0.0	-2.18	0.85	0.60	0.76	2.12	11234	1469	6	0	0	0	0	logfile
✔	8GSZ	34244	2023-09-28	2022-09-07	3.65	3.14	3.68	3.8	0.006	0.86	0.0	0.05	15.61	0.01	2.241	12.76	0.39	2.7	97.3	0.0	-5.38	0.62	0.76	1.72	3.8	0.003	0.69	0.0	0.04	17.49	0.00	2.123	9.67	0.39	4.0	96.0	0.0	-0.70	0.76	0.62	0.76	0.90	4870	620	2	0	0	0	0	logfile
✔	7ZZY	15041	2023-09-29	2022-05-26	3.3	4.29	3.23	3.7	0.002	0.47	0.0	0.04	16.51	0.00	2.238	2.10	0.31	2.8	97.2	0.0	1.09	0.82	0.78	2.57	3.7	0.004	0.78	0.0	0.04	17.47	0.00	2.247	9.31	0.00	3.0	97.0	0.0	1.66	1.83	0.89	0.83	2.44	8784	1104	16	0	0	24	0	logfile
✔	7F1Q	31422	2023-09-29	2021-06-09	2.9	3.05	—	3.1	0.002	0.55	0.0	0.04	12.03	0.00	2.264	10.21	0.27	2.6	97.4	0.0	-1.52	0.58	0.72	2.25	3.1	0.003	0.62	0.0	0.04	15.78	0.00	2.108	12.36	2.44	3.2	96.8	0.0	0.60	0.68	0.61	0.80	3.52	7123	938	4	0	0	0	0	logfile
✔	7KTW	23032	2023-09-28	2020-11-24	4.27	4.73	—	4.4	0.007	1.12	0.0	0.05	12.46	0.01	2.214	14.28	0.12	5.1	94.9	0.0	-4.61	0.81	0.82	—	4.4	0.003	0.80	0.0	0.04	13.32	0.00	2.163	18.78	0.12	3.4	96.6	0.0	0.23	0.96	0.80	0.79	—	7577	995	1	0	0	0	0	logfile
✔	6Li3	0902	2023-09-28	2019-12-10	3.32	3.48	—	3.8	0.002	0.56	0.0	0.04	13.86	0.00	2.124	7.66	0.00	2.4	97.6	0.0	-2.69	0.55	0.68	0.78	3.6	0.003	0.65	0.0	0.04	16.65	0.00	2.150	9.72	0.33	3.8	96.2	0.0	-0.12	1.35	0.59	0.77	1.61	8289	1045	5	0	0	0	0	logfile
✔	7WB0	32391	2023-09-30	2021-12-15	3.2	3.52	—	3.3	0.003	0.58	0.0	0.03	18.37	0.00	2.136	7.20	0.00	3.3	96.6	0.1	0.54	0.70	0.73	1.78	3.3	0.003	0.57	0.0	0.03	19.30	0.00	2.126	7.96	0.14	4.7	95.2	0.1	0.59	1.05	0.71	0.77	1.11	10096	797	4	175	0	0	0	logfile
✔	8GS4	34220	2023-09-28	2022-09-04	3.5	3.66	3.52	3.7	0.004	0.83	0.0	0.05	13.58	0.01	2.251	11.71	0.00	13.3	86.7	0.0	-4.70	0.69	0.75	2.42	3.7	0.003	0.77	0.0	0.04	15.61	0.01	2.148	10.85	0.23	11.3	88.7	0.0	-3.30	0.39	0.67	0.75	1.27	8250	1050	2	0	0	0	0	logfile
✔	7Y9T	33691	2023-09-28	2022-06-26	3.1	3.31	3.07	3.3	0.018	1.56	18.0	0.09	11.12	0.01	2.305	4.09	0.96	6.7	93.3	0.0	-6.23	0.69	0.87	3.51	3.3	0.003	0.67	0.0	0.04	13.62	0.00	2.220	5.37	0.36	4.5	95.5	0.0	-1.47	0.59	0.67	0.87	3.20	7726	992	4	0	0	0	0	logfile
✔	7VQX	32095	2023-09-29	2021-10-21	2.74	2.89	—	2.9	0.004	0.55	0.0	0.04	14.12	0.00	2.094	8.36	0.00	3.6	96.4	0.0	0.32	0.63	0.79	3.28	2.9	0.004	0.56	0.0	0.04	16.26	0.00	2.098	7.30	1.62	3.5	96.5	0.0	0.97	0.30	0.62	0.82	2.80	9049	1148	6	0	0	0	0	logfile
✔	7X9C	33071	2023-09-28	2022-03-15	3.0	3.24	—	3.2	0.002	0.52	0.0	0.04	10.16	0.00	2.208	8.69	0.00	3.2	96.8	0.0	-2.49	0.58	0.71	1.58	3.2	0.004	0.72	0.0	0.04	14.54	0.00	2.141	12.76	2.39	3.1	96.9	0.0	-0.27	0.64	0.60	0.78	1.79	7219	945	5	0	0	0	0	logfile
✔	6XYo	10650	2023-09-28	2020-01-30	2.6	2.79	2.31	2.7	0.008	0.74	0.0	0.06	12.93	0.00	2.300	5.78	0.93	2.6	97.4	0.0	-2.90	0.46	0.89	5.98	2.7	0.007	0.62	0.0	0.05	17.92	0.00	2.105	4.45	2.22	4.4	95.6	0.0	-1.84	0.96	0.48	0.91	4.74	5490	800	10	0	0	0	0	logfile
✔	6GC6	4381	2023-09-30	2018-04-17	4.3	5.02	—	4.5	0.003	0.66	0.0	0.03	12.88	0.00	2.229	5.26	0.00	6.0	93.9	0.1	-3.94	0.74	0.57	—	4.5	0.007	0.68	0.0	0.04	15.59	0.00	1.991	27.18	0.00	9.2	90.8	0.0	-2.08	2.14	0.91	0.85	—	61404	2118	19	2092	0	0	0	logfile

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