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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7VDA | 31912 | 2023-04-26 | 2021-09-06 | 2.26 | 2.04 | 2.42 | 2.1 | 0.003 | 0.53 | 0.0 | 0.04 | 17.67 | 0.00 | 2.142 | 7.99 | 2.20 | 2.6 | 97.4 | 0.0 | 1.67 | 0.66 | 0.82 | 4.06 | 2.0 | 0.002 | 0.54 | 0.0 | 0.04 | 18.07 | 0.00 | 2.051 | 8.99 | 2.60 | 2.1 | 97.9 | 0.0 | 1.12 | 0.41 | 0.66 | 0.84 | 4.19 | 23292 | 2976 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V22 | 31634 | 2023-04-19 | 2021-08-07 | 3.38 | 3.61 | — | 3.6 | 0.003 | 0.66 | 0.0 | 0.04 | 14.10 | 0.00 | 2.236 | 8.81 | 0.46 | 12.1 | 87.5 | 0.4 | -2.81 | 0.53 | 0.77 | 4.24 | 3.6 | 0.004 | 0.70 | 0.0 | 0.05 | 16.03 | 0.00 | 2.170 | 11.14 | 0.46 | 13.4 | 86.2 | 0.4 | -2.46 | 0.55 | 0.53 | 0.80 | 3.78 | 1958 | 240 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 6VL6 | 21231 | 2023-04-25 | 2020-01-22 | 4.6 | 5.00 | 4.54 | 4.6 | 0.019 | 1.46 | 0.0 | 0.09 | 11.38 | 0.01 | 2.431 | 0.59 | 0.00 | 0.9 | 99.1 | 0.0 | 0.45 | 0.87 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21504 | 2640 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 8G86 | 29837 | 2023-04-22 | 2023-02-17 | 2.3 | 2.24 | 2.41 | 2.5 | 0.003 | 0.50 | 0.0 | 0.03 | 27.67 | 0.00 | 2.275 | 6.71 | 0.95 | 0.9 | 99.1 | 0.0 | 1.60 | 0.69 | 0.83 | 5.02 | 2.4 | 0.005 | 0.63 | 0.0 | 0.04 | 29.42 | 0.00 | 2.112 | 7.41 | 2.06 | 1.5 | 98.5 | 0.0 | 2.50 | 0.92 | 0.70 | 0.85 | 4.86 | 11972 | 759 | 10 | 290 | 0 | 0 | 0 | logfile |
✔ | 7TDD | 25825 | 2023-04-25 | 2021-12-30 | 3.5 | 2.37 | 2.70 | 2.8 | 0.029 | 2.07 | 183.0 | 0.29 | 12.65 | 0.01 | 2.192 | 1.90 | 0.55 | 1.5 | 98.4 | 0.1 | -0.52 | 0.67 | 0.64 | 2.40 | 2.1 | 0.006 | 0.63 | 0.0 | 0.04 | 15.61 | 0.00 | 1.945 | 7.73 | 0.74 | 2.9 | 97.1 | 0.1 | 1.89 | 3.04 | 0.67 | 0.69 | 2.69 | 20031 | 1211 | 2 | 0 | 0 | 0 | 10025 | logfile |
✔ | 7WiJ | 32531 | 2023-04-22 | 2022-01-03 | 3.17 | 3.08 | 3.01 | 3.2 | 0.002 | 0.50 | 0.0 | 0.03 | 14.49 | 0.00 | 2.243 | 4.52 | 0.00 | 0.4 | 99.6 | 0.0 | 2.75 | 0.70 | 0.85 | 1.82 | 3.2 | 0.003 | 0.53 | 0.0 | 0.03 | 15.57 | 0.00 | 2.262 | 4.68 | 0.00 | 0.8 | 99.2 | 0.0 | 3.40 | 0.26 | 0.71 | 0.87 | 1.79 | 12396 | 1602 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7T3o | 25666 | 2023-04-20 | 2021-12-08 | 3.3 | 3.72 | — | 3.7 | 0.006 | 0.68 | 0.0 | 0.05 | 13.49 | 0.00 | 2.284 | 3.91 | 0.29 | 7.1 | 92.9 | 0.0 | -3.36 | 0.49 | 0.86 | 1.84 | 3.7 | 0.003 | 0.66 | 0.0 | 0.04 | 16.17 | 0.00 | 2.229 | 6.17 | 0.00 | 3.6 | 96.4 | 0.0 | 0.21 | 0.58 | 0.48 | 0.84 | 1.64 | 3410 | 452 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TRJ | 26098 | 2023-04-27 | 2022-01-29 | 2.8 | 3.41 | — | 3.3 | 0.003 | 0.84 | 0.0 | 0.05 | 16.16 | 0.00 | 2.080 | 9.67 | 6.92 | 3.6 | 96.3 | 0.1 | -1.80 | 0.78 | 0.82 | 2.52 | 3.3 | 0.004 | 0.64 | 0.0 | 0.04 | 16.60 | 0.00 | 2.120 | 7.40 | 3.64 | 4.1 | 95.9 | 0.0 | 1.01 | 0.70 | 0.79 | 0.85 | 2.99 | 25190 | 3234 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GZ7 | 34391 | 2023-04-24 | 2022-09-26 | 3.5 | 3.85 | 3.64 | 3.8 | 0.012 | 1.67 | 6.0 | 0.13 | 24.08 | 0.01 | 1.693 | 4.61 | 32.81 | 5.8 | 93.5 | 0.7 | -1.19 | 0.62 | 0.80 | 3.08 | 3.8 | 0.003 | 0.60 | 0.0 | 0.04 | 17.40 | 0.00 | 2.110 | 7.68 | 0.37 | 3.9 | 95.8 | 0.3 | -0.27 | 1.83 | 0.66 | 0.84 | 3.30 | 17474 | 2136 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FEC | 31552 | 2023-04-26 | 2021-07-19 | 3.64 | 3.94 | — | 3.9 | 0.004 | 0.83 | 0.0 | 0.06 | 14.62 | 0.00 | 2.217 | 14.41 | 0.34 | 2.7 | 97.3 | 0.0 | -1.99 | 0.76 | 0.83 | 2.05 | 3.9 | 0.003 | 0.64 | 0.0 | 0.04 | 16.23 | 0.00 | 2.107 | 9.56 | 0.26 | 4.5 | 95.5 | 0.0 | -0.28 | 0.41 | 0.74 | 0.79 | 1.82 | 24075 | 3024 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SC0 | 25007 | 2023-04-22 | 2021-09-26 | 3.4 | 3.72 | — | 3.8 | 0.003 | 0.52 | 0.0 | 0.04 | 10.01 | 0.00 | 2.479 | 1.29 | 0.00 | 7.9 | 92.1 | 0.0 | -2.84 | 0.69 | 0.81 | 2.75 | 3.8 | 0.003 | 0.59 | 0.0 | 0.04 | 14.15 | 0.00 | 2.371 | 1.37 | 0.54 | 9.0 | 90.2 | 0.8 | -0.63 | 1.49 | 0.68 | 0.82 | 2.11 | 11638 | 1419 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YoN | 33984 | 2023-04-21 | 2022-08-01 | 2.95 | 2.24 | — | 3.0 | 0.003 | 0.50 | 0.0 | 0.04 | 13.65 | 0.00 | 2.155 | 3.67 | 0.00 | 2.7 | 97.3 | 0.0 | 0.20 | 0.78 | 0.83 | 3.97 | 3.0 | 0.003 | 0.57 | 0.0 | 0.04 | 15.70 | 0.00 | 2.192 | 4.38 | 1.79 | 2.2 | 97.8 | 0.0 | 1.36 | 0.37 | 0.78 | 0.86 | 3.10 | 9161 | 1166 | 8 | 0 | 0 | 2 | 0 | logfile |
✔ | 7QG0 | 13951 | 2023-04-29 | 2021-12-07 | 4.02 | 4.24 | — | 4.0 | 0.006 | 0.84 | 0.0 | 0.04 | 14.92 | 0.00 | 2.062 | 26.03 | 1.71 | 10.1 | 89.9 | 0.0 | -4.81 | 0.85 | 0.81 | — | 4.0 | 0.004 | 0.70 | 0.0 | 0.04 | 14.59 | 0.00 | 2.095 | 18.28 | 0.01 | 5.6 | 94.4 | 0.0 | -0.09 | 0.77 | 0.84 | 0.80 | — | 78880 | 10096 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SAE | 24950 | 2023-04-25 | 2021-09-22 | 3.0 | 3.49 | — | 3.0 | 0.008 | 0.99 | 0.0 | 0.05 | 17.46 | 0.01 | 2.251 | 2.73 | 0.29 | 7.8 | 92.1 | 0.1 | -4.37 | 0.81 | 0.78 | 3.61 | 3.0 | 0.004 | 0.63 | 0.0 | 0.04 | 17.16 | 0.01 | 2.073 | 7.22 | 2.13 | 6.6 | 93.4 | 0.0 | -1.78 | 0.92 | 0.87 | 0.91 | 2.99 | 68571 | 2090 | 19 | 2434 | 0 | 0 | 0 | logfile |
✔ | 7FDA | 31538 | 2023-04-22 | 2021-07-16 | 4.2 | 3.94 | — | 3.5 | 0.003 | 0.56 | 0.0 | 0.04 | 11.99 | 0.00 | 1.871 | 8.71 | 0.00 | 5.8 | 94.2 | 0.0 | -0.86 | 0.72 | 0.63 | — | 3.1 | 0.004 | 0.75 | 0.0 | 0.04 | 13.16 | 0.00 | 2.055 | 16.36 | 0.00 | 5.8 | 94.2 | 0.0 | -0.77 | 1.81 | 0.77 | 0.78 | — | 64497 | 8295 | 31 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RWB | 24713 | 2023-04-26 | 2021-08-19 | 3.9 | 4.19 | 3.83 | 4.1 | 0.003 | 0.53 | 0.0 | 0.04 | 12.89 | 0.00 | 2.103 | 8.14 | 0.10 | 4.4 | 95.5 | 0.1 | 0.92 | 0.72 | 0.69 | 1.21 | 4.1 | 0.003 | 0.54 | 0.0 | 0.04 | 14.64 | 0.00 | 2.101 | 8.82 | 0.10 | 4.9 | 95.1 | 0.0 | 1.17 | 0.36 | 0.74 | 0.71 | 0.79 | 23962 | 3408 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FDB | 31539 | 2023-04-22 | 2021-07-16 | 4.8 | 5.04 | 4.73 | 8.8 | 0.003 | 0.57 | 0.0 | 0.04 | 13.84 | 0.00 | 1.761 | 12.61 | 0.00 | 7.3 | 92.6 | 0.0 | -0.78 | 0.66 | 0.32 | — | 4.7 | 0.004 | 0.88 | 0.0 | 0.05 | 13.87 | 0.01 | 2.001 | 29.12 | 0.03 | 7.7 | 92.3 | 0.0 | -1.80 | 2.25 | 0.77 | 0.68 | — | 64497 | 8295 | 31 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YQ3 | 34018 | 2023-04-23 | 2022-08-05 | 3.6 | 3.98 | 3.76 | 4.0 | 0.013 | 1.20 | 5.0 | 0.07 | 16.55 | 0.01 | 2.136 | 5.51 | 0.32 | 8.9 | 91.1 | 0.0 | -4.22 | 0.63 | 0.67 | 1.96 | 4.0 | 0.003 | 0.77 | 0.0 | 0.04 | 17.47 | 0.00 | 2.169 | 8.68 | 0.32 | 8.9 | 91.1 | 0.0 | -2.48 | 1.20 | 0.74 | 0.79 | 1.35 | 14412 | 1707 | 5 | 28 | 0 | 0 | 0 | logfile |
✔ | 6TDW | 10469 | 2023-04-22 | 2019-11-10 | 3.8 | 4.05 | 3.54 | 4.0 | 0.007 | 0.84 | 0.0 | 0.08 | 13.71 | 0.01 | 2.078 | 4.92 | 0.15 | 7.2 | 92.8 | 0.0 | -1.91 | 0.70 | 0.78 | 1.48 | 4.0 | 0.003 | 0.62 | 0.0 | 0.08 | 15.82 | 0.00 | 2.083 | 8.31 | 0.15 | 6.3 | 93.7 | 0.0 | 1.74 | 1.44 | 0.72 | 0.80 | 0.88 | 12997 | 841 | 7 | 0 | 0 | 0 | 6561 | logfile |
✔ | 8DFo | 27409 | 2023-04-26 | 2022-06-22 | 3.1 | 3.40 | 3.29 | 7.2 | 0.022 | 1.64 | 93.0 | 0.16 | 17.81 | 0.01 | 1.724 | 6.88 | 0.57 | 4.8 | 95.2 | 0.0 | -0.44 | 0.27 | 0.07 | 0.22 | 3.4 | 0.003 | 0.75 | 0.0 | 0.04 | 17.28 | 0.01 | 2.086 | 17.82 | 0.12 | 4.2 | 95.8 | 0.0 | -0.71 | 1.86 | 0.44 | 0.39 | 0.56 | 23861 | 2912 | 13 | 45 | 0 | 0 | 0 | logfile |