Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VDA	31912	2023-04-26	2021-09-06	2.26	2.04	2.42	2.1	0.003	0.53	0.0	0.04	17.67	0.00	2.142	7.99	2.20	2.6	97.4	0.0	1.67	0.66	0.82	4.06	2.0	0.002	0.54	0.0	0.04	18.07	0.00	2.051	8.99	2.60	2.1	97.9	0.0	1.12	0.41	0.66	0.84	4.19	23292	2976	6	0	0	0	0	logfile
✔	7V22	31634	2023-04-19	2021-08-07	3.38	3.61	—	3.6	0.003	0.66	0.0	0.04	14.10	0.00	2.236	8.81	0.46	12.1	87.5	0.4	-2.81	0.53	0.77	4.24	3.6	0.004	0.70	0.0	0.05	16.03	0.00	2.170	11.14	0.46	13.4	86.2	0.4	-2.46	0.55	0.53	0.80	3.78	1958	240	1	0	0	0	0	logfile
✘	6VL6	21231	2023-04-25	2020-01-22	4.6	5.00	4.54	4.6	0.019	1.46	0.0	0.09	11.38	0.01	2.431	0.59	0.00	0.9	99.1	0.0	0.45	0.87	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21504	2640	24	0	0	0	0	logfile
✔	8G86	29837	2023-04-22	2023-02-17	2.3	2.24	2.41	2.5	0.003	0.50	0.0	0.03	27.67	0.00	2.275	6.71	0.95	0.9	99.1	0.0	1.60	0.69	0.83	5.02	2.4	0.005	0.63	0.0	0.04	29.42	0.00	2.112	7.41	2.06	1.5	98.5	0.0	2.50	0.92	0.70	0.85	4.86	11972	759	10	290	0	0	0	logfile
✔	7TDD	25825	2023-04-25	2021-12-30	3.5	2.37	2.70	2.8	0.029	2.07	183.0	0.29	12.65	0.01	2.192	1.90	0.55	1.5	98.4	0.1	-0.52	0.67	0.64	2.40	2.1	0.006	0.63	0.0	0.04	15.61	0.00	1.945	7.73	0.74	2.9	97.1	0.1	1.89	3.04	0.67	0.69	2.69	20031	1211	2	0	0	0	10025	logfile
✔	7WiJ	32531	2023-04-22	2022-01-03	3.17	3.08	3.01	3.2	0.002	0.50	0.0	0.03	14.49	0.00	2.243	4.52	0.00	0.4	99.6	0.0	2.75	0.70	0.85	1.82	3.2	0.003	0.53	0.0	0.03	15.57	0.00	2.262	4.68	0.00	0.8	99.2	0.0	3.40	0.26	0.71	0.87	1.79	12396	1602	6	0	0	0	0	logfile
✔	7T3o	25666	2023-04-20	2021-12-08	3.3	3.72	—	3.7	0.006	0.68	0.0	0.05	13.49	0.00	2.284	3.91	0.29	7.1	92.9	0.0	-3.36	0.49	0.86	1.84	3.7	0.003	0.66	0.0	0.04	16.17	0.00	2.229	6.17	0.00	3.6	96.4	0.0	0.21	0.58	0.48	0.84	1.64	3410	452	1	0	0	0	0	logfile
✔	7TRJ	26098	2023-04-27	2022-01-29	2.8	3.41	—	3.3	0.003	0.84	0.0	0.05	16.16	0.00	2.080	9.67	6.92	3.6	96.3	0.1	-1.80	0.78	0.82	2.52	3.3	0.004	0.64	0.0	0.04	16.60	0.00	2.120	7.40	3.64	4.1	95.9	0.0	1.01	0.70	0.79	0.85	2.99	25190	3234	10	0	0	0	0	logfile
✔	8GZ7	34391	2023-04-24	2022-09-26	3.5	3.85	3.64	3.8	0.012	1.67	6.0	0.13	24.08	0.01	1.693	4.61	32.81	5.8	93.5	0.7	-1.19	0.62	0.80	3.08	3.8	0.003	0.60	0.0	0.04	17.40	0.00	2.110	7.68	0.37	3.9	95.8	0.3	-0.27	1.83	0.66	0.84	3.30	17474	2136	8	0	0	0	0	logfile
✔	7FEC	31552	2023-04-26	2021-07-19	3.64	3.94	—	3.9	0.004	0.83	0.0	0.06	14.62	0.00	2.217	14.41	0.34	2.7	97.3	0.0	-1.99	0.76	0.83	2.05	3.9	0.003	0.64	0.0	0.04	16.23	0.00	2.107	9.56	0.26	4.5	95.5	0.0	-0.28	0.41	0.74	0.79	1.82	24075	3024	9	0	0	0	0	logfile
✔	7SC0	25007	2023-04-22	2021-09-26	3.4	3.72	—	3.8	0.003	0.52	0.0	0.04	10.01	0.00	2.479	1.29	0.00	7.9	92.1	0.0	-2.84	0.69	0.81	2.75	3.8	0.003	0.59	0.0	0.04	14.15	0.00	2.371	1.37	0.54	9.0	90.2	0.8	-0.63	1.49	0.68	0.82	2.11	11638	1419	11	0	0	0	0	logfile
✔	7YoN	33984	2023-04-21	2022-08-01	2.95	2.24	—	3.0	0.003	0.50	0.0	0.04	13.65	0.00	2.155	3.67	0.00	2.7	97.3	0.0	0.20	0.78	0.83	3.97	3.0	0.003	0.57	0.0	0.04	15.70	0.00	2.192	4.38	1.79	2.2	97.8	0.0	1.36	0.37	0.78	0.86	3.10	9161	1166	8	0	0	2	0	logfile
✔	7QG0	13951	2023-04-29	2021-12-07	4.02	4.24	—	4.0	0.006	0.84	0.0	0.04	14.92	0.00	2.062	26.03	1.71	10.1	89.9	0.0	-4.81	0.85	0.81	—	4.0	0.004	0.70	0.0	0.04	14.59	0.00	2.095	18.28	0.01	5.6	94.4	0.0	-0.09	0.77	0.84	0.80	—	78880	10096	16	0	0	0	0	logfile
✔	7SAE	24950	2023-04-25	2021-09-22	3.0	3.49	—	3.0	0.008	0.99	0.0	0.05	17.46	0.01	2.251	2.73	0.29	7.8	92.1	0.1	-4.37	0.81	0.78	3.61	3.0	0.004	0.63	0.0	0.04	17.16	0.01	2.073	7.22	2.13	6.6	93.4	0.0	-1.78	0.92	0.87	0.91	2.99	68571	2090	19	2434	0	0	0	logfile
✔	7FDA	31538	2023-04-22	2021-07-16	4.2	3.94	—	3.5	0.003	0.56	0.0	0.04	11.99	0.00	1.871	8.71	0.00	5.8	94.2	0.0	-0.86	0.72	0.63	—	3.1	0.004	0.75	0.0	0.04	13.16	0.00	2.055	16.36	0.00	5.8	94.2	0.0	-0.77	1.81	0.77	0.78	—	64497	8295	31	0	0	0	0	logfile
✔	7RWB	24713	2023-04-26	2021-08-19	3.9	4.19	3.83	4.1	0.003	0.53	0.0	0.04	12.89	0.00	2.103	8.14	0.10	4.4	95.5	0.1	0.92	0.72	0.69	1.21	4.1	0.003	0.54	0.0	0.04	14.64	0.00	2.101	8.82	0.10	4.9	95.1	0.0	1.17	0.36	0.74	0.71	0.79	23962	3408	8	0	0	0	0	logfile
✔	7FDB	31539	2023-04-22	2021-07-16	4.8	5.04	4.73	8.8	0.003	0.57	0.0	0.04	13.84	0.00	1.761	12.61	0.00	7.3	92.6	0.0	-0.78	0.66	0.32	—	4.7	0.004	0.88	0.0	0.05	13.87	0.01	2.001	29.12	0.03	7.7	92.3	0.0	-1.80	2.25	0.77	0.68	—	64497	8295	31	0	0	0	0	logfile
✔	7YQ3	34018	2023-04-23	2022-08-05	3.6	3.98	3.76	4.0	0.013	1.20	5.0	0.07	16.55	0.01	2.136	5.51	0.32	8.9	91.1	0.0	-4.22	0.63	0.67	1.96	4.0	0.003	0.77	0.0	0.04	17.47	0.00	2.169	8.68	0.32	8.9	91.1	0.0	-2.48	1.20	0.74	0.79	1.35	14412	1707	5	28	0	0	0	logfile
✔	6TDW	10469	2023-04-22	2019-11-10	3.8	4.05	3.54	4.0	0.007	0.84	0.0	0.08	13.71	0.01	2.078	4.92	0.15	7.2	92.8	0.0	-1.91	0.70	0.78	1.48	4.0	0.003	0.62	0.0	0.08	15.82	0.00	2.083	8.31	0.15	6.3	93.7	0.0	1.74	1.44	0.72	0.80	0.88	12997	841	7	0	0	0	6561	logfile
✔	8DFo	27409	2023-04-26	2022-06-22	3.1	3.40	3.29	7.2	0.022	1.64	93.0	0.16	17.81	0.01	1.724	6.88	0.57	4.8	95.2	0.0	-0.44	0.27	0.07	0.22	3.4	0.003	0.75	0.0	0.04	17.28	0.01	2.086	17.82	0.12	4.2	95.8	0.0	-0.71	1.86	0.44	0.39	0.56	23861	2912	13	45	0	0	0	logfile

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