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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5oYG | 3861 | 2023-09-30 | 2017-09-08 | 4.06 | 4.29 | 4.02 | 4.1 | 0.007 | 1.27 | 10.0 | 0.10 | 12.53 | 0.01 | 2.282 | 5.95 | 1.98 | 6.9 | 93.1 | 0.0 | -3.35 | 0.68 | 0.83 | — | 4.1 | 0.004 | 0.73 | 0.0 | 0.04 | 12.60 | 0.00 | 2.130 | 11.47 | 0.00 | 6.0 | 94.0 | 0.0 | 0.56 | 0.84 | 0.68 | 0.82 | — | 11596 | 1418 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7F1R | 31423 | 2023-09-28 | 2021-06-09 | 3.0 | 3.21 | — | 3.2 | 0.002 | 0.48 | 0.0 | 0.04 | 11.21 | 0.00 | 2.224 | 8.07 | 0.46 | 1.5 | 98.5 | 0.0 | -2.21 | 0.59 | 0.70 | 1.80 | 3.2 | 0.004 | 0.71 | 0.0 | 0.04 | 15.11 | 0.00 | 2.161 | 13.28 | 3.82 | 3.9 | 96.1 | 0.0 | 0.37 | 1.26 | 0.63 | 0.80 | 2.53 | 6621 | 894 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KTU | 23030 | 2023-09-28 | 2020-11-24 | 4.15 | 4.49 | — | 4.2 | 0.006 | 1.05 | 0.0 | 0.05 | 12.61 | 0.01 | 2.259 | 12.91 | 0.37 | 4.3 | 95.7 | 0.0 | -5.35 | 0.81 | 0.79 | — | 4.2 | 0.003 | 0.79 | 0.0 | 0.04 | 13.23 | 0.00 | 2.086 | 18.78 | 0.00 | 3.4 | 96.6 | 0.0 | -0.16 | 0.95 | 0.80 | 0.76 | — | 7577 | 995 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Ji0 | 22341 | 2023-09-27 | 2020-07-21 | 2.95 | 3.30 | 3.08 | 3.2 | 0.003 | 0.48 | 0.0 | 0.04 | 12.97 | 0.00 | 2.233 | 3.94 | 5.91 | 4.5 | 95.5 | 0.0 | -3.04 | 0.73 | 0.84 | 4.32 | 3.2 | 0.002 | 0.47 | 0.0 | 0.04 | 15.32 | 0.00 | 2.210 | 3.66 | 2.96 | 3.8 | 96.2 | 0.0 | 1.47 | 0.45 | 0.70 | 0.83 | 3.46 | 3556 | 432 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7EVP | 31339 | 2023-09-28 | 2021-05-21 | 3.2 | 3.77 | — | 3.7 | 0.008 | 0.87 | 0.0 | 0.06 | 9.80 | 0.01 | 2.328 | 3.80 | 0.26 | 6.2 | 93.8 | 0.0 | -5.27 | 0.64 | 0.77 | 3.74 | 3.6 | 0.003 | 0.62 | 0.0 | 0.05 | 13.72 | 0.00 | 2.294 | 8.36 | 0.40 | 5.6 | 94.4 | 0.0 | -1.84 | 0.63 | 0.69 | 0.81 | 2.98 | 6616 | 840 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WNQ | 32633 | 2023-09-29 | 2022-01-19 | 2.7 | 2.91 | 2.72 | 3.0 | 0.012 | 1.20 | 6.0 | 0.07 | 9.17 | 0.01 | 2.155 | 1.80 | 0.63 | 3.6 | 96.4 | 0.0 | -5.53 | 0.68 | 0.86 | 4.76 | 3.0 | 0.002 | 0.59 | 0.0 | 0.04 | 14.37 | 0.00 | 2.281 | 3.82 | 0.85 | 2.6 | 97.4 | 0.0 | 2.05 | 1.26 | 0.66 | 0.85 | 3.75 | 8847 | 1104 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7S1Z | 24813 | 2023-09-28 | 2021-09-02 | 3.3 | 3.78 | — | 3.9 | 0.003 | 0.70 | 0.0 | 0.04 | 12.33 | 0.01 | 2.245 | 12.11 | 0.18 | 9.4 | 90.6 | 0.0 | -0.47 | 0.30 | 0.50 | 0.99 | 3.9 | 0.004 | 0.63 | 0.0 | 0.04 | 14.70 | 0.00 | 2.159 | 10.34 | 0.18 | 9.3 | 90.7 | 0.0 | -0.08 | 0.47 | 0.47 | 0.69 | 1.74 | 6416 | 944 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7L5J | 23187 | 2023-09-30 | 2020-12-22 | 3.2 | 3.78 | — | 4.0 | 0.008 | 0.88 | 0.0 | 0.05 | 17.03 | 0.01 | 2.099 | 15.85 | 8.54 | 16.4 | 83.5 | 0.1 | -5.48 | 0.60 | 0.73 | 1.80 | 3.9 | 0.003 | 0.71 | 0.0 | 0.04 | 15.80 | 0.00 | 2.213 | 9.23 | 0.41 | 8.2 | 91.8 | 0.0 | -2.18 | 0.85 | 0.60 | 0.76 | 2.12 | 11234 | 1469 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GSZ | 34244 | 2023-09-28 | 2022-09-07 | 3.65 | 3.14 | 3.68 | 3.8 | 0.006 | 0.86 | 0.0 | 0.05 | 15.61 | 0.01 | 2.241 | 12.76 | 0.39 | 2.7 | 97.3 | 0.0 | -5.38 | 0.62 | 0.76 | 1.72 | 3.8 | 0.003 | 0.69 | 0.0 | 0.04 | 17.49 | 0.00 | 2.123 | 9.67 | 0.39 | 4.0 | 96.0 | 0.0 | -0.70 | 0.76 | 0.62 | 0.76 | 0.90 | 4870 | 620 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZZY | 15041 | 2023-09-29 | 2022-05-26 | 3.3 | 4.29 | 3.23 | 3.7 | 0.002 | 0.47 | 0.0 | 0.04 | 16.51 | 0.00 | 2.238 | 2.10 | 0.31 | 2.8 | 97.2 | 0.0 | 1.09 | 0.82 | 0.78 | 2.57 | 3.7 | 0.004 | 0.78 | 0.0 | 0.04 | 17.47 | 0.00 | 2.247 | 9.31 | 0.00 | 3.0 | 97.0 | 0.0 | 1.66 | 1.83 | 0.89 | 0.83 | 2.44 | 8784 | 1104 | 16 | 0 | 0 | 24 | 0 | logfile |
✔ | 7F1Q | 31422 | 2023-09-29 | 2021-06-09 | 2.9 | 3.05 | — | 3.1 | 0.002 | 0.55 | 0.0 | 0.04 | 12.03 | 0.00 | 2.264 | 10.21 | 0.27 | 2.6 | 97.4 | 0.0 | -1.52 | 0.58 | 0.72 | 2.25 | 3.1 | 0.003 | 0.62 | 0.0 | 0.04 | 15.78 | 0.00 | 2.108 | 12.36 | 2.44 | 3.2 | 96.8 | 0.0 | 0.60 | 0.68 | 0.61 | 0.80 | 3.52 | 7123 | 938 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KTW | 23032 | 2023-09-28 | 2020-11-24 | 4.27 | 4.73 | — | 4.4 | 0.007 | 1.12 | 0.0 | 0.05 | 12.46 | 0.01 | 2.214 | 14.28 | 0.12 | 5.1 | 94.9 | 0.0 | -4.61 | 0.81 | 0.82 | — | 4.4 | 0.003 | 0.80 | 0.0 | 0.04 | 13.32 | 0.00 | 2.163 | 18.78 | 0.12 | 3.4 | 96.6 | 0.0 | 0.23 | 0.96 | 0.80 | 0.79 | — | 7577 | 995 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Li3 | 0902 | 2023-09-28 | 2019-12-10 | 3.32 | 3.48 | — | 3.8 | 0.002 | 0.56 | 0.0 | 0.04 | 13.86 | 0.00 | 2.124 | 7.66 | 0.00 | 2.4 | 97.6 | 0.0 | -2.69 | 0.55 | 0.68 | 0.78 | 3.6 | 0.003 | 0.65 | 0.0 | 0.04 | 16.65 | 0.00 | 2.150 | 9.72 | 0.33 | 3.8 | 96.2 | 0.0 | -0.12 | 1.35 | 0.59 | 0.77 | 1.61 | 8289 | 1045 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WB0 | 32391 | 2023-09-30 | 2021-12-15 | 3.2 | 3.52 | — | 3.3 | 0.003 | 0.58 | 0.0 | 0.03 | 18.37 | 0.00 | 2.136 | 7.20 | 0.00 | 3.3 | 96.6 | 0.1 | 0.54 | 0.70 | 0.73 | 1.78 | 3.3 | 0.003 | 0.57 | 0.0 | 0.03 | 19.30 | 0.00 | 2.126 | 7.96 | 0.14 | 4.7 | 95.2 | 0.1 | 0.59 | 1.05 | 0.71 | 0.77 | 1.11 | 10096 | 797 | 4 | 175 | 0 | 0 | 0 | logfile |
✔ | 8GS4 | 34220 | 2023-09-28 | 2022-09-04 | 3.5 | 3.66 | 3.52 | 3.7 | 0.004 | 0.83 | 0.0 | 0.05 | 13.58 | 0.01 | 2.251 | 11.71 | 0.00 | 13.3 | 86.7 | 0.0 | -4.70 | 0.69 | 0.75 | 2.42 | 3.7 | 0.003 | 0.77 | 0.0 | 0.04 | 15.61 | 0.01 | 2.148 | 10.85 | 0.23 | 11.3 | 88.7 | 0.0 | -3.30 | 0.39 | 0.67 | 0.75 | 1.27 | 8250 | 1050 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Y9T | 33691 | 2023-09-28 | 2022-06-26 | 3.1 | 3.31 | 3.07 | 3.3 | 0.018 | 1.56 | 18.0 | 0.09 | 11.12 | 0.01 | 2.305 | 4.09 | 0.96 | 6.7 | 93.3 | 0.0 | -6.23 | 0.69 | 0.87 | 3.51 | 3.3 | 0.003 | 0.67 | 0.0 | 0.04 | 13.62 | 0.00 | 2.220 | 5.37 | 0.36 | 4.5 | 95.5 | 0.0 | -1.47 | 0.59 | 0.67 | 0.87 | 3.20 | 7726 | 992 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VQX | 32095 | 2023-09-29 | 2021-10-21 | 2.74 | 2.89 | — | 2.9 | 0.004 | 0.55 | 0.0 | 0.04 | 14.12 | 0.00 | 2.094 | 8.36 | 0.00 | 3.6 | 96.4 | 0.0 | 0.32 | 0.63 | 0.79 | 3.28 | 2.9 | 0.004 | 0.56 | 0.0 | 0.04 | 16.26 | 0.00 | 2.098 | 7.30 | 1.62 | 3.5 | 96.5 | 0.0 | 0.97 | 0.30 | 0.62 | 0.82 | 2.80 | 9049 | 1148 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7X9C | 33071 | 2023-09-28 | 2022-03-15 | 3.0 | 3.24 | — | 3.2 | 0.002 | 0.52 | 0.0 | 0.04 | 10.16 | 0.00 | 2.208 | 8.69 | 0.00 | 3.2 | 96.8 | 0.0 | -2.49 | 0.58 | 0.71 | 1.58 | 3.2 | 0.004 | 0.72 | 0.0 | 0.04 | 14.54 | 0.00 | 2.141 | 12.76 | 2.39 | 3.1 | 96.9 | 0.0 | -0.27 | 0.64 | 0.60 | 0.78 | 1.79 | 7219 | 945 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XYo | 10650 | 2023-09-28 | 2020-01-30 | 2.6 | 2.79 | 2.31 | 2.7 | 0.008 | 0.74 | 0.0 | 0.06 | 12.93 | 0.00 | 2.300 | 5.78 | 0.93 | 2.6 | 97.4 | 0.0 | -2.90 | 0.46 | 0.89 | 5.98 | 2.7 | 0.007 | 0.62 | 0.0 | 0.05 | 17.92 | 0.00 | 2.105 | 4.45 | 2.22 | 4.4 | 95.6 | 0.0 | -1.84 | 0.96 | 0.48 | 0.91 | 4.74 | 5490 | 800 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GC6 | 4381 | 2023-09-30 | 2018-04-17 | 4.3 | 5.02 | — | 4.5 | 0.003 | 0.66 | 0.0 | 0.03 | 12.88 | 0.00 | 2.229 | 5.26 | 0.00 | 6.0 | 93.9 | 0.1 | -3.94 | 0.74 | 0.57 | — | 4.5 | 0.007 | 0.68 | 0.0 | 0.04 | 15.59 | 0.00 | 1.991 | 27.18 | 0.00 | 9.2 | 90.8 | 0.0 | -2.08 | 2.14 | 0.91 | 0.85 | — | 61404 | 2118 | 19 | 2092 | 0 | 0 | 0 | logfile |