Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7DXJ	30911	2022-05-14	2021-01-19	3.6	3.70	—	3.7	0.007	1.17	0.0	0.06	11.07	0.01	2.271	4.90	0.97	5.9	93.9	0.2	-3.89	0.69	0.79	2.01	3.7	0.004	0.79	0.0	0.04	15.64	0.01	2.161	11.36	0.53	4.5	95.4	0.1	1.05	0.84	0.67	0.80	1.05	20491	2621	2	0	0	0	0	logfile
✔	6ZPG	11338	2022-05-12	2020-07-08	4.6	4.29	—	7.0	0.004	0.99	0.0	0.05	15.64	0.01	2.313	5.51	0.25	5.6	94.4	0.0	-3.85	0.60	0.55	—	6.9	0.003	0.85	0.0	0.05	15.43	0.00	2.151	21.12	0.00	7.4	92.6	0.0	-0.02	2.62	0.63	0.61	—	3808	463	1	0	0	0	0	logfile
✔	6XJB	22205	2022-05-13	2020-06-23	3.8	4.06	—	3.9	0.002	0.56	0.0	0.04	13.15	0.00	2.165	9.70	0.00	8.6	91.4	0.0	-3.06	0.88	0.82	1.76	3.9	0.005	0.69	0.0	0.04	15.37	0.00	2.075	14.28	0.46	8.2	91.8	0.0	-1.64	1.83	0.88	0.86	2.01	10070	1277	1	0	0	0	0	logfile
✔	6ZGL	11210	2022-05-14	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	9.41	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.56	0.0	0.04	15.75	0.00	2.118	4.99	1.00	0.6	99.4	0.0	3.59	0.75	0.76	0.83	7.07	15760	1848	24	0	0	964	0	logfile
✔	6Lo8	0935	2022-05-12	2020-01-04	3.83	3.89	—	3.6	0.005	0.87	0.0	0.05	14.88	0.01	2.242	5.11	0.46	3.7	96.1	0.2	-3.08	0.65	0.79	1.72	3.6	0.005	0.90	0.0	0.04	17.08	0.00	2.100	14.45	0.57	5.0	94.9	0.1	1.39	0.92	0.66	0.79	1.60	7972	997	10	0	0	0	0	logfile
✔	7K1V	22630	2022-05-12	2020-09-08	4.6	4.95	—	4.8	0.008	1.12	0.0	0.06	15.77	0.01	2.159	13.77	0.40	11.0	89.0	0.0	-4.04	0.71	0.71	—	4.8	0.003	0.71	0.0	0.04	14.11	0.01	2.178	18.81	0.00	5.2	94.8	0.0	-1.01	1.44	0.70	0.75	—	4971	626	1	0	0	0	0	logfile
✔	7K10	22619	2022-05-13	2020-09-06	3.3	3.44	—	3.4	0.006	0.98	0.0	0.05	15.43	0.01	2.300	4.24	0.37	10.6	89.3	0.1	-5.28	0.72	0.77	2.12	3.4	0.005	0.72	0.0	0.04	16.51	0.01	2.099	7.69	0.18	9.5	90.4	0.1	-1.67	0.41	0.72	0.77	1.66	10037	1259	1	0	0	0	0	logfile
✔	6X6A	22074	2022-05-14	2020-05-27	3.6	3.58	—	3.4	0.010	1.29	0.0	0.08	14.43	0.01	2.206	14.10	0.45	7.5	92.4	0.1	-2.80	0.86	0.83	3.00	3.4	0.003	0.69	0.0	0.04	15.72	0.01	2.074	15.37	0.32	6.3	93.7	0.0	-1.03	0.57	0.86	0.82	2.47	20240	2524	8	0	0	0	0	logfile
✔	7D43	30568	2022-05-16	2020-09-22	4.3	4.40	—	4.3	0.006	0.99	0.0	0.05	14.62	0.01	2.018	28.64	0.31	18.3	81.6	0.1	-6.11	0.83	0.79	—	4.3	0.006	0.86	0.0	0.05	13.83	0.00	1.407	22.71	0.03	11.0	89.0	0.0	-2.74	1.57	0.83	0.78	—	31009	4347	14	0	0	0	0	logfile
✔	7K08	22589	2022-05-18	2020-09-03	4.7	4.26	—	4.2	0.025	2.31	9.0	0.11	11.10	0.02	2.175	6.34	0.00	5.0	94.8	0.2	-0.14	0.70	0.60	—	4.2	0.003	0.73	0.0	0.04	14.34	0.00	1.959	12.77	0.00	10.6	89.4	0.0	-1.92	1.54	0.73	0.67	—	48735	2988	9	0	0	0	24606	logfile
✔	7JSZ	22464	2022-05-20	2020-08-16	3.7	4.30	3.93	4.0	0.005	0.96	2.0	0.08	13.65	0.01	2.227	11.95	0.88	11.0	87.0	2.0	-5.09	0.86	0.85	1.01	4.0	0.005	0.75	0.0	0.04	16.17	0.01	1.949	26.63	1.06	10.6	89.2	0.2	-2.73	1.10	0.87	0.86	0.80	147860	6144	57	4655	0	0	0	logfile
✔	7D68	30590	2022-05-12	2020-09-29	3.0	3.24	—	3.3	0.004	0.66	0.0	0.05	13.07	0.00	2.121	8.22	0.76	4.8	95.1	0.1	-2.09	0.62	0.77	3.53	3.2	0.003	0.58	0.0	0.04	16.05	0.00	2.103	7.98	2.48	3.8	96.2	0.0	0.36	0.52	0.62	0.78	2.73	8564	1070	8	0	0	7	0	logfile
✔	6L7E	0843	2022-05-17	2019-11-01	3.2	3.28	—	3.2	0.004	0.78	0.0	0.05	8.54	0.01	2.217	3.34	0.05	3.3	96.7	0.0	-4.72	0.78	0.85	3.48	3.2	0.002	0.54	0.0	0.04	14.22	0.00	2.063	6.37	0.12	2.5	97.5	0.0	1.33	2.01	0.79	0.88	3.26	97400	12270	5	0	0	0	0	logfile
✔	7KGF	22868	2022-05-15	2020-10-16	3.42	3.13	—	3.2	0.005	0.80	0.0	0.08	14.60	0.01	1.967	9.12	0.94	2.6	97.4	0.0	1.47	0.62	0.73	2.13	3.2	0.003	0.64	0.0	0.04	16.57	0.00	2.127	10.03	0.39	2.5	97.5	0.0	1.29	0.51	0.65	0.77	1.97	23355	3060	3	0	0	0	0	logfile
✔	6Y59	10691	2022-05-16	2020-02-25	3.2	4.61	3.12	3.4	0.008	0.94	0.0	0.05	12.32	0.01	2.376	3.45	0.00	1.2	98.8	0.0	-3.39	0.92	0.84	2.09	3.4	0.002	0.53	0.0	0.04	13.47	0.00	2.158	9.24	0.06	2.1	97.9	0.0	0.53	1.18	0.93	0.86	2.30	31910	1915	5	0	0	0	16045	logfile
✔	7ABH	11696	2022-05-14	2020-09-07	4.5	4.60	—	4.4	0.003	0.63	0.0	0.05	9.27	0.00	1.529	2.09	0.00	6.0	93.7	0.2	-2.78	0.75	0.77	—	4.4	0.002	0.63	0.0	0.04	9.50	0.00	2.174	3.05	0.00	6.2	93.8	0.0	-0.31	1.29	0.77	0.80	—	17922	3288	16	65	0	0	0	logfile
✔	6ZD0	11172	2022-05-12	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	4.3	0.003	0.74	0.0	0.04	5.33	0.00	2.199	10.22	0.00	19.5	80.1	0.4	-4.32	2.53	0.59	0.57	—	7962	1611	6	0	0	0	0	logfile
✔	6WL1	21815	2022-05-13	2020-04-17	4.0	4.02	—	4.0	0.007	0.81	0.0	0.05	7.85	0.00	2.413	3.17	0.00	0.0	100.0	0.0	-1.08	0.71	0.85	—	4.0	0.004	0.51	0.0	0.04	16.18	0.00	2.242	6.18	1.33	0.0	100.0	0.0	6.14	0.73	0.72	0.86	—	14612	1872	52	0	0	0	0	logfile
✔	7KTT	23029	2022-05-12	2020-11-24	4.17	4.46	—	4.2	0.007	1.04	0.0	0.06	13.23	0.01	2.239	12.66	0.25	5.7	94.3	0.0	-5.41	0.81	0.78	—	4.2	0.003	0.72	0.0	0.04	13.88	0.00	2.185	16.38	0.00	3.1	96.9	0.0	0.28	0.72	0.80	0.76	—	7568	994	1	0	0	0	0	logfile
✔	6WYL	21968	2022-05-12	2020-05-13	3.9	3.99	—	4.0	0.012	0.91	0.0	0.05	11.33	0.01	2.237	3.66	0.00	2.7	97.3	0.0	-1.66	0.65	0.82	1.94	3.9	0.004	0.78	0.0	0.04	15.51	0.01	2.090	10.88	0.21	3.6	96.4	0.0	2.21	1.29	0.66	0.81	1.40	8847	1194	6	0	0	0	0	logfile

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