Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6X2C	22001	2022-07-05	2020-05-20	3.2	3.70	3.22	3.6	0.006	0.89	0.0	0.05	9.04	0.01	2.257	4.03	0.12	4.3	95.6	0.0	-3.93	0.76	0.77	3.04	3.6	0.006	0.86	0.0	0.04	12.25	0.01	2.181	9.88	0.08	3.8	96.2	0.0	-0.66	1.43	0.77	0.81	2.67	22827	2916	3	0	0	0	0	logfile
✔	6X2A	21999	2022-07-05	2020-05-20	3.3	3.94	3.39	3.8	0.012	1.75	4.0	0.09	12.51	0.01	2.552	0.29	1.64	6.3	93.3	0.4	-1.33	0.81	0.82	3.41	3.8	0.004	0.61	0.0	0.04	13.32	0.00	2.215	6.50	0.13	4.0	95.9	0.0	0.25	2.19	0.79	0.80	2.85	21562	2875	3	0	0	0	0	logfile
✔	6X2B	22000	2022-07-04	2020-05-20	3.6	4.27	3.73	3.9	0.012	1.74	2.0	0.09	13.17	0.01	2.530	0.42	2.08	6.7	92.9	0.4	-1.72	0.77	0.76	2.50	3.9	0.003	0.59	0.0	0.04	13.15	0.00	2.210	6.18	0.09	3.7	96.3	0.0	0.42	0.50	0.83	0.82	2.05	21120	2861	3	0	0	0	0	logfile
✔	6WDE	21633	2022-07-09	2020-03-31	3.0	3.35	3.25	3.2	0.006	0.94	0.0	0.08	13.37	0.01	1.309	10.39	0.96	10.3	87.8	1.9	-4.88	0.80	0.84	1.82	3.2	0.009	0.84	1.0	0.04	15.77	0.01	1.668	19.02	4.24	10.4	89.3	0.3	-2.57	1.46	0.81	0.86	1.55	150220	6025	58	4810	0	0	0	logfile
✔	6WD1	21620	2022-07-08	2020-03-31	3.3	3.61	3.63	3.4	0.006	0.94	0.0	0.08	13.39	0.01	2.219	11.84	0.55	10.6	87.9	1.5	-5.05	0.82	0.83	1.64	3.4	0.007	0.78	0.0	0.04	15.96	0.01	1.982	22.79	0.77	11.5	88.4	0.1	-2.50	1.51	0.83	0.85	1.23	146942	6023	56	4657	0	0	0	logfile
✔	6W2D	21525	2022-07-05	2020-03-05	4.0	4.10	—	4.0	0.006	0.74	0.0	0.05	13.33	0.01	1.362	15.70	5.51	5.0	94.6	0.4	-2.57	0.34	0.54	—	4.0	0.011	1.14	6.0	0.05	16.79	0.01	1.857	20.16	0.32	6.0	94.0	0.1	-1.12	1.56	0.41	0.75	—	74272	9430	21	0	0	0	0	logfile
✔	6RJU	4906	2022-07-02	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	10.0	0.003	0.66	0.0	0.03	16.23	0.00	2.422	6.03	0.00	3.9	96.1	0.0	-0.32	1.40	0.27	0.03	-0.67	1992	131	1	0	0	0	997	logfile
✘	6L53	0836	2022-07-04	2019-10-22	3.63	3.79	—	3.7	0.002	0.67	0.0	0.04	9.71	0.00	2.193	8.74	3.49	9.8	89.9	0.3	-4.90	0.77	0.70	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13991	1935	1	0	0	0	0	logfile
✔	6WD9	21628	2022-07-10	2020-03-31	3.7	4.05	4.07	3.9	0.006	0.94	0.0	0.08	13.39	0.01	1.313	11.30	0.54	10.7	87.6	1.7	-4.88	0.83	0.82	1.03	3.9	0.006	0.78	2.0	0.04	15.95	0.01	1.991	23.92	1.17	10.8	89.1	0.2	-2.41	0.67	0.84	0.83	0.69	152927	6371	62	4811	0	0	0	logfile
✔	6Y97	10733	2022-07-03	2020-03-06	4.33	4.65	—	4.5	0.002	0.58	0.0	0.04	14.61	0.00	2.147	7.28	0.00	5.2	94.8	0.0	1.11	0.69	0.62	—	4.5	0.004	0.76	0.0	0.04	13.35	0.00	2.096	18.78	0.00	6.8	93.2	0.0	0.33	1.52	0.72	0.72	—	4366	564	4	0	0	0	0	logfile
✔	6RoW	4975	2022-07-07	2019-05-13	4.5	4.52	4.16	4.2	0.016	1.50	0.0	0.07	14.46	0.01	1.848	49.70	0.00	30.3	68.7	1.0	-6.95	0.81	0.74	—	4.2	0.003	0.67	0.0	0.04	13.72	0.00	1.972	11.97	0.00	13.1	86.7	0.1	-2.58	1.49	0.81	0.73	—	43049	3129	7	0	0	0	20156	logfile
✔	6WDH	21636	2022-07-09	2020-03-31	4.3	3.96	5.24	3.9	0.006	1.00	0.0	0.08	13.22	0.01	2.227	11.46	1.02	12.5	85.3	2.1	-4.94	0.74	0.68	—	3.8	0.005	0.82	0.0	0.04	15.85	0.01	1.817	25.64	0.04	11.1	88.7	0.1	-2.97	1.40	0.82	0.82	—	150149	6024	59	4807	0	0	0	logfile
✔	6T0R	10357	2022-07-04	2019-10-03	2.82	2.90	2.91	2.9	0.005	0.66	0.0	0.05	13.99	0.01	2.279	4.12	4.99	3.5	96.5	0.0	-2.98	0.69	0.85	3.55	2.9	0.003	0.53	0.0	0.04	16.56	0.00	2.062	7.84	2.66	2.9	97.1	0.0	0.69	1.03	0.71	0.86	3.04	14120	1690	7	20	0	31	0	logfile
✔	6W2E	21526	2022-07-03	2020-03-05	4.4	4.45	—	4.4	0.006	1.04	1.0	0.06	10.30	0.01	1.618	8.06	0.68	4.5	95.1	0.4	-2.37	0.33	0.53	—	4.4	0.005	0.88	0.0	0.05	13.70	0.01	2.047	19.21	0.10	8.1	91.8	0.1	-1.40	1.39	0.40	0.76	—	62525	7943	19	0	0	0	0	logfile
✔	6WD3	21622	2022-07-11	2020-03-31	3.6	3.96	3.97	3.8	0.006	0.95	0.0	0.08	13.44	0.01	1.315	11.61	0.96	12.0	86.3	1.8	-4.89	0.83	0.83	1.34	3.8	0.007	0.82	2.0	0.04	16.06	0.01	1.671	29.20	0.57	11.4	88.4	0.2	-2.74	1.48	0.84	0.84	0.97	153211	6408	62	4811	0	0	0	logfile
✔	6ZXJ	11522	2022-07-07	2020-07-29	3.5	3.86	—	3.8	0.016	1.31	3.0	0.07	12.15	0.01	2.048	18.91	0.26	8.3	91.1	0.6	-3.10	0.69	0.79	2.28	3.8	0.003	0.82	0.0	0.05	14.82	0.00	2.036	12.08	0.41	3.8	96.2	0.0	-0.10	0.63	0.67	0.77	1.87	38244	5099	9	0	0	0	0	logfile
✔	6M02	30028	2022-07-04	2020-02-19	3.2	3.49	3.90	3.9	0.006	0.96	0.0	0.05	16.46	0.01	2.263	6.57	1.64	7.0	93.0	0.0	-6.29	0.60	0.70	1.57	3.9	0.003	0.69	0.0	0.04	17.04	0.00	2.288	10.89	0.42	3.8	96.2	0.0	-1.81	1.20	0.61	0.72	1.42	18935	2345	7	0	0	0	0	logfile
✔	6T0U	10359	2022-07-04	2019-10-03	3.12	3.20	3.13	3.2	0.005	0.68	0.0	0.05	14.30	0.01	2.273	3.99	5.25	3.4	96.6	0.0	-3.41	0.68	0.86	3.55	3.2	0.004	0.57	0.0	0.04	15.79	0.00	2.124	8.09	0.13	3.6	96.4	0.0	0.31	0.59	0.69	0.88	3.02	14176	1695	4	23	0	0	0	logfile
✔	6WZ9	21971	2022-07-03	2020-05-13	2.8	2.45	—	3.0	0.006	0.74	0.0	0.04	29.10	0.01	2.015	6.96	2.27	1.7	98.3	0.0	0.07	0.73	0.70	2.55	3.0	0.005	0.65	0.0	0.04	29.29	0.00	2.198	10.84	3.25	2.6	97.4	0.0	1.84	0.52	0.74	0.73	2.39	11926	738	10	296	0	0	0	logfile
✔	6YJ5	10816	2022-07-02	2020-04-02	3.5	2.92	3.56	3.3	0.007	0.87	0.0	0.05	13.19	0.01	2.183	4.49	0.00	12.5	87.5	0.0	-5.13	0.42	0.62	3.01	3.3	0.003	0.67	0.0	0.05	15.25	0.01	2.265	8.18	0.61	8.2	91.8	0.0	-1.96	0.81	0.51	0.72	2.81	2061	306	1	0	0	0	0	logfile

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