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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7RTB | 24680 | 2023-04-21 | 2021-08-12 | 2.14 | 2.32 | 2.23 | 2.3 | 0.003 | 0.57 | 0.0 | 0.04 | 14.48 | 0.00 | 2.277 | 5.37 | 0.77 | 1.6 | 98.4 | 0.0 | -0.80 | 0.64 | 0.69 | 3.38 | 2.3 | 0.003 | 0.59 | 0.0 | 0.04 | 17.07 | 0.00 | 2.260 | 5.43 | 2.77 | 2.7 | 97.3 | 0.0 | 1.12 | 0.68 | 0.68 | 0.82 | 3.99 | 8972 | 1169 | 7 | 0 | 0 | 1 | 0 | logfile |
✔ | 6SJL | 10218 | 2023-04-25 | 2019-08-13 | 2.6 | 3.00 | 2.64 | 2.9 | 0.013 | 0.87 | 0.0 | 0.05 | 14.60 | 0.01 | 1.985 | 13.09 | 0.05 | 5.7 | 94.1 | 0.2 | -2.82 | 0.70 | 0.83 | 5.22 | 2.9 | 0.008 | 0.70 | 0.0 | 0.05 | 16.77 | 0.00 | 2.063 | 11.73 | 1.79 | 5.1 | 94.9 | 0.0 | -0.73 | 1.14 | 0.70 | 0.84 | 4.43 | 19459 | 2537 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SK6 | 25174 | 2023-04-21 | 2021-10-19 | 4.0 | 4.42 | — | 4.1 | 0.018 | 1.92 | 2.0 | 0.11 | 13.16 | 0.01 | 2.462 | 0.11 | 0.76 | 4.2 | 94.0 | 1.8 | 0.35 | 0.52 | 0.52 | — | 4.1 | 0.003 | 0.58 | 0.0 | 0.04 | 14.77 | 0.00 | 2.131 | 14.34 | 0.19 | 4.2 | 95.8 | 0.0 | 0.54 | 1.46 | 0.64 | 0.71 | — | 9144 | 585 | 4 | 0 | 0 | 0 | 4462 | logfile |
✔ | 7WK6 | 32560 | 2023-04-20 | 2022-01-08 | 3.67 | 2.86 | — | 3.8 | 0.008 | 1.07 | 1.0 | 0.07 | 15.40 | 0.01 | 2.328 | 5.81 | 0.57 | 4.7 | 94.9 | 0.4 | -5.05 | 0.77 | 0.77 | 2.23 | 3.7 | 0.007 | 0.94 | 0.0 | 0.05 | 17.87 | 0.00 | 2.115 | 21.26 | 0.86 | 5.1 | 94.9 | 0.0 | -1.19 | 1.42 | 0.79 | 0.79 | 1.73 | 6428 | 791 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YN6 | 10850 | 2023-04-22 | 2020-04-10 | 3.28 | 3.66 | 3.42 | 3.7 | 0.008 | 0.95 | 0.0 | 0.06 | 13.08 | 0.01 | 2.225 | 7.92 | 0.81 | 4.4 | 95.6 | 0.0 | -1.34 | 0.70 | 0.80 | 2.33 | 3.6 | 0.005 | 0.70 | 0.0 | 0.05 | 15.67 | 0.00 | 2.037 | 13.89 | 0.59 | 5.1 | 94.9 | 0.0 | 0.46 | 0.55 | 0.72 | 0.83 | 1.85 | 113760 | 14220 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CVY | 27021 | 2023-04-24 | 2022-05-18 | 3.6 | 3.82 | 3.60 | 3.8 | 0.008 | 1.47 | 16.0 | 0.12 | 15.01 | 0.01 | 2.214 | 10.00 | 6.05 | 2.7 | 97.3 | 0.0 | 0.51 | 0.70 | 0.79 | 1.45 | 3.8 | 0.003 | 0.64 | 0.0 | 0.04 | 16.69 | 0.00 | 2.135 | 13.74 | 0.37 | 3.4 | 96.6 | 0.0 | 0.65 | 1.00 | 0.73 | 0.79 | 1.76 | 17930 | 2226 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MVY | 24058 | 2023-04-27 | 2021-05-15 | 2.39 | 3.24 | 1.97 | 3.1 | 0.002 | 0.39 | 0.0 | 0.03 | 6.61 | 0.00 | 2.209 | 3.28 | 0.00 | 0.7 | 99.3 | 0.0 | -0.54 | 0.72 | 0.64 | 0.92 | 3.0 | 0.004 | 0.62 | 0.0 | 0.04 | 14.21 | 0.00 | 1.966 | 12.50 | 1.86 | 4.0 | 96.0 | 0.0 | 1.26 | 1.65 | 0.76 | 0.75 | 2.15 | 26555 | 1694 | 2 | 0 | 0 | 0 | 13337 | logfile |
✔ | 7LVT | 23542 | 2023-04-25 | 2021-02-26 | 4.6 | 4.32 | — | 4.0 | 0.008 | 1.36 | 3.0 | 0.09 | 13.04 | 0.01 | 2.057 | 6.40 | 0.96 | 6.4 | 93.3 | 0.3 | -2.96 | 0.68 | 0.65 | — | 3.8 | 0.003 | 0.71 | 0.0 | 0.04 | 12.92 | 0.00 | 2.206 | 12.08 | 0.00 | 5.2 | 94.6 | 0.1 | 0.10 | 16.93 | 0.56 | 0.46 | — | 18944 | 2876 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SZ5 | 25561 | 2023-04-21 | 2021-11-25 | 3.6 | 4.60 | — | 3.8 | 0.007 | 0.90 | 0.0 | 0.06 | 14.97 | 0.00 | 1.947 | 18.21 | 2.83 | 16.8 | 83.0 | 0.2 | -5.33 | 0.86 | 0.75 | 1.50 | 3.8 | 0.003 | 0.69 | 0.0 | 0.04 | 15.28 | 0.00 | 2.192 | 15.12 | 0.09 | 10.7 | 89.3 | 0.0 | -2.46 | 1.64 | 0.91 | 0.85 | 1.02 | 9367 | 1214 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7LB5 | 23263 | 2023-04-26 | 2021-01-07 | 3.16 | 4.00 | — | 3.7 | 0.003 | 0.52 | 0.0 | 0.04 | 14.28 | 0.00 | 2.323 | 7.12 | 0.93 | 1.9 | 98.1 | 0.0 | -1.95 | 0.87 | 0.84 | 2.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23616 | 3120 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EK1 | 28192 | 2023-04-22 | 2022-09-19 | 3.6 | 3.91 | 3.66 | 3.8 | 0.004 | 0.74 | 0.0 | 0.05 | 15.72 | 0.00 | 2.185 | 9.39 | 0.53 | 9.2 | 90.3 | 0.5 | -1.95 | 0.80 | 0.83 | 2.83 | 3.8 | 0.003 | 0.70 | 0.0 | 0.04 | 16.39 | 0.00 | 2.148 | 8.31 | 0.21 | 10.3 | 89.7 | 0.0 | -1.82 | 1.02 | 0.80 | 0.84 | 2.52 | 8497 | 1102 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XC6 | 33113 | 2023-04-23 | 2022-03-23 | 2.79 | 2.93 | 2.77 | 3.0 | 0.006 | 0.72 | 0.0 | 0.05 | 17.67 | 0.00 | 2.003 | 7.10 | 7.75 | 7.1 | 92.9 | 0.0 | -2.40 | 0.63 | 0.67 | 0.82 | 2.9 | 0.003 | 0.59 | 0.0 | 0.04 | 18.05 | 0.00 | 2.090 | 8.29 | 1.61 | 6.0 | 94.0 | 0.0 | 0.03 | 0.82 | 0.75 | 0.91 | 3.32 | 16176 | 2026 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N4R | 0342 | 2023-04-23 | 2018-11-20 | 4.2 | 4.09 | 4.16 | 4.1 | 0.008 | 1.07 | 0.0 | 0.06 | 10.26 | 0.01 | 2.222 | 4.60 | 0.23 | 6.8 | 93.2 | 0.0 | -3.27 | 0.66 | 0.76 | — | 4.1 | 0.003 | 0.72 | 0.0 | 0.04 | 12.63 | 0.00 | 2.154 | 11.44 | 0.12 | 5.9 | 94.1 | 0.0 | -0.61 | 0.84 | 0.64 | 0.77 | — | 15444 | 1942 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SK0 | 10219 | 2023-04-20 | 2019-08-14 | 2.3 | 2.30 | 2.11 | 2.2 | 0.008 | 0.74 | 0.0 | 0.05 | 15.85 | 0.00 | 2.202 | 9.23 | 0.97 | 3.3 | 96.7 | 0.0 | -1.30 | 0.70 | 0.83 | 6.89 | 2.2 | 0.006 | 0.75 | 0.0 | 0.05 | 17.30 | 0.00 | 2.171 | 10.77 | 0.65 | 4.2 | 95.8 | 0.0 | -1.34 | 1.50 | 0.80 | 0.91 | 6.92 | 5826 | 792 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7B52 | 12017 | 2023-04-22 | 2020-12-03 | 3.8 | 4.98 | — | 3.9 | 0.004 | 0.84 | 0.0 | 0.04 | 14.20 | 0.00 | 2.035 | 24.47 | 0.07 | 16.4 | 83.4 | 0.2 | -2.23 | 0.83 | 0.84 | 0.97 | 3.9 | 0.003 | 0.72 | 0.0 | 0.04 | 15.17 | 0.00 | 2.105 | 18.54 | 0.21 | 13.6 | 86.3 | 0.1 | -1.29 | 0.92 | 0.83 | 0.83 | 0.73 | 13186 | 1638 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7M7J | 23715 | 2023-04-26 | 2021-03-28 | 4.3 | 5.19 | — | 4.4 | 0.005 | 0.93 | 1.0 | 0.06 | 15.47 | 0.01 | 2.117 | 19.19 | 5.04 | 6.4 | 93.5 | 0.1 | -2.14 | 0.84 | 0.71 | — | 4.5 | 0.005 | 0.77 | 0.0 | 0.04 | 13.76 | 0.01 | 2.081 | 31.30 | 0.00 | 7.3 | 92.7 | 0.0 | -1.55 | 1.27 | 0.86 | 0.78 | — | 23224 | 3124 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PGV | 13400 | 2023-04-22 | 2021-08-16 | 3.4 | 3.84 | 3.63 | 3.7 | 0.007 | 0.78 | 0.0 | 0.04 | 27.38 | 0.01 | 0.678 | 14.15 | 0.42 | 3.7 | 96.3 | 0.0 | 0.44 | 0.73 | 0.65 | 2.04 | 3.7 | 0.005 | 0.56 | 0.0 | 0.03 | 28.48 | 0.00 | 1.920 | 36.24 | 1.12 | 4.5 | 95.5 | 0.0 | 1.70 | 0.60 | 0.81 | 0.87 | 1.31 | 13484 | 856 | 11 | 290 | 0 | 0 | 713 | logfile |
✘ | 8CYD | 27075 | 2023-04-28 | 2022-05-23 | 2.6 | 3.24 | 2.62 | 3.0 | 0.002 | 0.51 | 0.0 | 0.04 | 12.52 | 0.01 | 1.930 | 6.47 | 0.32 | 4.9 | 94.7 | 0.4 | 0.04 | 0.77 | 0.79 | 2.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28454 | 3663 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YND | 33959 | 2023-04-24 | 2022-07-30 | 3.29 | 3.46 | 3.34 | 3.4 | 0.007 | 0.78 | 1.0 | 0.05 | 17.06 | 0.01 | 2.213 | 8.16 | 1.46 | 10.5 | 89.2 | 0.2 | -4.25 | 0.81 | 0.86 | 2.29 | 3.4 | 0.003 | 0.63 | 0.0 | 0.04 | 17.56 | 0.00 | 2.236 | 6.73 | 0.22 | 9.8 | 90.2 | 0.0 | -1.55 | 1.14 | 0.83 | 0.89 | 2.10 | 18098 | 2115 | 3 | 38 | 0 | 0 | 0 | logfile |
✔ | 8GUY | 34281 | 2023-04-23 | 2022-09-14 | 4.18 | 4.57 | 4.26 | 4.3 | 0.005 | 1.00 | 0.0 | 0.06 | 14.55 | 0.01 | 2.249 | 6.07 | 0.12 | 10.0 | 90.0 | 0.0 | -4.23 | 0.83 | 0.80 | — | 4.3 | 0.003 | 0.70 | 0.0 | 0.05 | 13.80 | 0.00 | 2.069 | 12.98 | 0.25 | 8.7 | 91.3 | 0.0 | -2.52 | 1.65 | 0.84 | 0.80 | — | 14222 | 1762 | 6 | 0 | 0 | 0 | 0 | logfile |