Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RTB	24680	2023-04-21	2021-08-12	2.14	2.32	2.23	2.3	0.003	0.57	0.0	0.04	14.48	0.00	2.277	5.37	0.77	1.6	98.4	0.0	-0.80	0.64	0.69	3.38	2.3	0.003	0.59	0.0	0.04	17.07	0.00	2.260	5.43	2.77	2.7	97.3	0.0	1.12	0.68	0.68	0.82	3.99	8972	1169	7	0	0	1	0	logfile
✔	6SJL	10218	2023-04-25	2019-08-13	2.6	3.00	2.64	2.9	0.013	0.87	0.0	0.05	14.60	0.01	1.985	13.09	0.05	5.7	94.1	0.2	-2.82	0.70	0.83	5.22	2.9	0.008	0.70	0.0	0.05	16.77	0.00	2.063	11.73	1.79	5.1	94.9	0.0	-0.73	1.14	0.70	0.84	4.43	19459	2537	6	0	0	0	0	logfile
✔	7SK6	25174	2023-04-21	2021-10-19	4.0	4.42	—	4.1	0.018	1.92	2.0	0.11	13.16	0.01	2.462	0.11	0.76	4.2	94.0	1.8	0.35	0.52	0.52	—	4.1	0.003	0.58	0.0	0.04	14.77	0.00	2.131	14.34	0.19	4.2	95.8	0.0	0.54	1.46	0.64	0.71	—	9144	585	4	0	0	0	4462	logfile
✔	7WK6	32560	2023-04-20	2022-01-08	3.67	2.86	—	3.8	0.008	1.07	1.0	0.07	15.40	0.01	2.328	5.81	0.57	4.7	94.9	0.4	-5.05	0.77	0.77	2.23	3.7	0.007	0.94	0.0	0.05	17.87	0.00	2.115	21.26	0.86	5.1	94.9	0.0	-1.19	1.42	0.79	0.79	1.73	6428	791	2	0	0	0	0	logfile
✔	6YN6	10850	2023-04-22	2020-04-10	3.28	3.66	3.42	3.7	0.008	0.95	0.0	0.06	13.08	0.01	2.225	7.92	0.81	4.4	95.6	0.0	-1.34	0.70	0.80	2.33	3.6	0.005	0.70	0.0	0.05	15.67	0.00	2.037	13.89	0.59	5.1	94.9	0.0	0.46	0.55	0.72	0.83	1.85	113760	14220	20	0	0	0	0	logfile
✔	8CVY	27021	2023-04-24	2022-05-18	3.6	3.82	3.60	3.8	0.008	1.47	16.0	0.12	15.01	0.01	2.214	10.00	6.05	2.7	97.3	0.0	0.51	0.70	0.79	1.45	3.8	0.003	0.64	0.0	0.04	16.69	0.00	2.135	13.74	0.37	3.4	96.6	0.0	0.65	1.00	0.73	0.79	1.76	17930	2226	7	0	0	0	0	logfile
✔	7MVY	24058	2023-04-27	2021-05-15	2.39	3.24	1.97	3.1	0.002	0.39	0.0	0.03	6.61	0.00	2.209	3.28	0.00	0.7	99.3	0.0	-0.54	0.72	0.64	0.92	3.0	0.004	0.62	0.0	0.04	14.21	0.00	1.966	12.50	1.86	4.0	96.0	0.0	1.26	1.65	0.76	0.75	2.15	26555	1694	2	0	0	0	13337	logfile
✔	7LVT	23542	2023-04-25	2021-02-26	4.6	4.32	—	4.0	0.008	1.36	3.0	0.09	13.04	0.01	2.057	6.40	0.96	6.4	93.3	0.3	-2.96	0.68	0.65	—	3.8	0.003	0.71	0.0	0.04	12.92	0.00	2.206	12.08	0.00	5.2	94.6	0.1	0.10	16.93	0.56	0.46	—	18944	2876	4	0	0	0	0	logfile
✔	7SZ5	25561	2023-04-21	2021-11-25	3.6	4.60	—	3.8	0.007	0.90	0.0	0.06	14.97	0.00	1.947	18.21	2.83	16.8	83.0	0.2	-5.33	0.86	0.75	1.50	3.8	0.003	0.69	0.0	0.04	15.28	0.00	2.192	15.12	0.09	10.7	89.3	0.0	-2.46	1.64	0.91	0.85	1.02	9367	1214	4	0	0	0	0	logfile
✘	7LB5	23263	2023-04-26	2021-01-07	3.16	4.00	—	3.7	0.003	0.52	0.0	0.04	14.28	0.00	2.323	7.12	0.93	1.9	98.1	0.0	-1.95	0.87	0.84	2.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23616	3120	12	0	0	0	0	logfile
✔	8EK1	28192	2023-04-22	2022-09-19	3.6	3.91	3.66	3.8	0.004	0.74	0.0	0.05	15.72	0.00	2.185	9.39	0.53	9.2	90.3	0.5	-1.95	0.80	0.83	2.83	3.8	0.003	0.70	0.0	0.04	16.39	0.00	2.148	8.31	0.21	10.3	89.7	0.0	-1.82	1.02	0.80	0.84	2.52	8497	1102	7	0	0	0	0	logfile
✔	7XC6	33113	2023-04-23	2022-03-23	2.79	2.93	2.77	3.0	0.006	0.72	0.0	0.05	17.67	0.00	2.003	7.10	7.75	7.1	92.9	0.0	-2.40	0.63	0.67	0.82	2.9	0.003	0.59	0.0	0.04	18.05	0.00	2.090	8.29	1.61	6.0	94.0	0.0	0.03	0.82	0.75	0.91	3.32	16176	2026	5	0	0	0	0	logfile
✔	6N4R	0342	2023-04-23	2018-11-20	4.2	4.09	4.16	4.1	0.008	1.07	0.0	0.06	10.26	0.01	2.222	4.60	0.23	6.8	93.2	0.0	-3.27	0.66	0.76	—	4.1	0.003	0.72	0.0	0.04	12.63	0.00	2.154	11.44	0.12	5.9	94.1	0.0	-0.61	0.84	0.64	0.77	—	15444	1942	12	0	0	0	0	logfile
✔	6SK0	10219	2023-04-20	2019-08-14	2.3	2.30	2.11	2.2	0.008	0.74	0.0	0.05	15.85	0.00	2.202	9.23	0.97	3.3	96.7	0.0	-1.30	0.70	0.83	6.89	2.2	0.006	0.75	0.0	0.05	17.30	0.00	2.171	10.77	0.65	4.2	95.8	0.0	-1.34	1.50	0.80	0.91	6.92	5826	792	3	0	0	0	0	logfile
✔	7B52	12017	2023-04-22	2020-12-03	3.8	4.98	—	3.9	0.004	0.84	0.0	0.04	14.20	0.00	2.035	24.47	0.07	16.4	83.4	0.2	-2.23	0.83	0.84	0.97	3.9	0.003	0.72	0.0	0.04	15.17	0.00	2.105	18.54	0.21	13.6	86.3	0.1	-1.29	0.92	0.83	0.83	0.73	13186	1638	1	0	0	0	0	logfile
✔	7M7J	23715	2023-04-26	2021-03-28	4.3	5.19	—	4.4	0.005	0.93	1.0	0.06	15.47	0.01	2.117	19.19	5.04	6.4	93.5	0.1	-2.14	0.84	0.71	—	4.5	0.005	0.77	0.0	0.04	13.76	0.01	2.081	31.30	0.00	7.3	92.7	0.0	-1.55	1.27	0.86	0.78	—	23224	3124	6	0	0	0	0	logfile
✔	7PGV	13400	2023-04-22	2021-08-16	3.4	3.84	3.63	3.7	0.007	0.78	0.0	0.04	27.38	0.01	0.678	14.15	0.42	3.7	96.3	0.0	0.44	0.73	0.65	2.04	3.7	0.005	0.56	0.0	0.03	28.48	0.00	1.920	36.24	1.12	4.5	95.5	0.0	1.70	0.60	0.81	0.87	1.31	13484	856	11	290	0	0	713	logfile
✘	8CYD	27075	2023-04-28	2022-05-23	2.6	3.24	2.62	3.0	0.002	0.51	0.0	0.04	12.52	0.01	1.930	6.47	0.32	4.9	94.7	0.4	0.04	0.77	0.79	2.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28454	3663	6	0	0	0	0	logfile
✔	7YND	33959	2023-04-24	2022-07-30	3.29	3.46	3.34	3.4	0.007	0.78	1.0	0.05	17.06	0.01	2.213	8.16	1.46	10.5	89.2	0.2	-4.25	0.81	0.86	2.29	3.4	0.003	0.63	0.0	0.04	17.56	0.00	2.236	6.73	0.22	9.8	90.2	0.0	-1.55	1.14	0.83	0.89	2.10	18098	2115	3	38	0	0	0	logfile
✔	8GUY	34281	2023-04-23	2022-09-14	4.18	4.57	4.26	4.3	0.005	1.00	0.0	0.06	14.55	0.01	2.249	6.07	0.12	10.0	90.0	0.0	-4.23	0.83	0.80	—	4.3	0.003	0.70	0.0	0.05	13.80	0.00	2.069	12.98	0.25	8.7	91.3	0.0	-2.52	1.65	0.84	0.80	—	14222	1762	6	0	0	0	0	logfile

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