Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6MGV	9112	2022-12-12	2018-09-15	3.1	3.21	3.10	3.2	0.018	1.44	0.0	0.08	9.73	0.01	2.082	3.09	0.00	3.4	96.5	0.2	-0.38	0.70	0.83	4.59	3.2	0.003	0.62	0.0	0.04	13.83	0.00	1.992	7.22	0.28	3.8	96.2	0.0	1.46	2.11	0.67	0.84	2.96	10150	1268	2	0	0	0	0	logfile
✔	6RVX	10016	2022-12-12	2019-06-03	3.61	3.75	3.53	3.8	0.006	0.99	0.0	0.05	14.07	0.01	2.261	5.00	0.29	8.0	92.0	0.0	-5.46	0.65	0.80	1.54	3.8	0.003	0.70	0.0	0.04	15.26	0.00	2.181	9.35	0.39	4.5	95.5	0.0	-0.61	1.15	0.63	0.79	0.95	9627	1290	3	0	0	0	0	logfile
✔	3J9X	6310	2022-12-14	2015-03-21	3.8	3.84	—	3.8	0.014	1.24	0.0	0.08	13.09	0.02	2.369	3.42	0.48	2.8	95.6	1.6	-0.65	0.51	0.57	0.47	3.8	0.005	0.76	0.0	0.04	16.22	0.01	2.070	21.17	0.53	2.4	97.6	0.0	1.81	1.19	0.63	0.79	2.10	70702	7424	60	696	0	0	0	logfile
✔	6QZF	4685	2022-12-14	2019-03-11	3.8	4.25	—	4.1	0.010	1.06	0.0	0.06	10.18	0.01	2.143	10.35	0.16	9.8	90.1	0.0	-4.87	0.67	0.72	0.54	4.1	0.005	0.94	0.0	0.05	17.06	0.00	2.016	28.21	1.13	9.3	90.7	0.0	-2.07	1.74	0.66	0.72	0.29	71628	8880	60	0	0	0	0	logfile
✔	6QX8	4663	2022-12-20	2019-03-07	4.07	4.05	—	4.0	0.008	0.94	0.0	0.05	15.12	0.01	1.805	11.25	0.14	8.0	91.9	0.2	-3.75	0.74	0.73	—	4.0	0.004	0.68	0.0	0.04	14.67	0.00	1.907	16.35	0.05	8.6	91.3	0.0	-1.50	1.29	0.74	0.73	—	38594	2384	8	24	0	0	19050	logfile
✔	6VQW	21359	2022-12-14	2020-02-06	3.42	4.18	—	4.0	0.010	0.94	0.0	0.06	15.46	0.01	2.245	8.00	0.57	13.1	86.9	0.0	-5.04	0.78	0.79	1.92	4.0	0.003	0.62	0.0	0.04	16.14	0.00	2.125	13.52	0.37	8.0	92.0	0.0	-2.14	0.45	0.79	0.81	1.33	20479	2648	11	40	0	0	0	logfile
✔	5H1R	9571	2022-12-22	2016-10-11	3.6	4.23	—	4.2	0.014	1.36	0.0	0.07	13.16	0.01	1.968	31.49	0.94	12.9	85.7	1.4	-6.24	0.54	0.74	1.84	4.2	0.004	1.01	0.0	0.05	17.27	0.01	2.148	15.75	0.70	10.0	89.5	0.6	-1.75	1.06	0.56	0.75	1.18	47440	5760	16	0	0	0	0	logfile
✔	6CAA	7441	2022-12-11	2018-01-29	3.9	3.97	—	3.9	0.009	1.33	0.0	0.07	12.41	0.01	1.886	9.42	0.00	13.0	87.0	0.0	-6.23	0.64	0.79	1.91	3.9	0.003	0.86	0.0	0.04	15.83	0.00	2.180	13.35	0.12	10.6	89.4	0.0	-1.13	2.15	0.65	0.79	1.41	7508	954	2	0	0	0	0	logfile
✔	6iJZ	9682	2022-12-12	2018-10-12	3.68	3.76	—	3.7	0.008	1.11	0.0	0.06	10.64	0.01	2.000	4.54	0.69	10.9	88.8	0.3	-5.03	0.57	0.80	2.19	3.7	0.003	0.75	0.0	0.04	15.33	0.00	2.030	10.36	0.52	9.2	90.6	0.1	-0.44	1.50	0.59	0.80	1.65	10964	1366	2	0	0	0	0	logfile
✔	6H5S	0142	2022-12-21	2018-07-25	3.3	3.45	—	3.4	0.010	1.12	0.0	0.06	10.77	0.01	1.817	7.18	0.65	7.3	92.7	0.0	-5.39	0.51	0.88	4.96	3.4	0.003	0.61	0.0	0.04	15.04	0.00	2.116	8.57	0.30	3.3	96.7	0.0	-0.13	0.63	0.53	0.90	3.33	44700	5445	30	90	0	0	0	logfile
✔	6CU8	7619	2022-12-11	2018-03-23	3.6	3.65	—	4.2	0.004	0.73	0.0	0.06	7.75	0.00	2.412	6.41	0.00	5.1	94.9	0.0	-2.86	0.45	0.73	-0.16	4.2	0.005	0.79	0.0	0.06	12.89	0.00	2.161	16.36	0.65	15.9	84.1	0.0	-3.37	1.79	0.42	0.73	2.58	2880	410	10	0	0	0	0	logfile
✔	6RWX	10045	2022-12-14	2019-06-06	3.55	3.70	3.33	3.6	0.009	0.89	0.0	0.06	9.10	0.01	2.192	3.34	0.00	8.3	91.7	0.0	-2.76	0.81	0.86	3.14	3.6	0.003	0.58	0.0	0.04	15.69	0.00	2.104	7.84	0.29	5.6	94.4	0.0	0.78	2.08	0.76	0.86	2.30	70968	8784	48	0	0	0	0	logfile
✔	6QoZ	4610	2022-12-14	2019-02-13	3.4	3.65	3.13	3.5	0.011	1.46	4.0	0.09	15.40	0.01	1.243	4.20	5.13	6.0	93.1	0.9	-3.28	0.40	0.62	0.09	3.5	0.006	0.74	0.0	0.05	15.36	0.00	2.112	8.73	0.45	5.0	95.0	0.0	-1.61	1.88	0.49	0.88	3.00	17987	2307	9	0	0	0	0	logfile
✔	6UAN	20708	2022-12-11	2019-09-11	3.9	4.03	—	3.9	0.007	0.95	0.0	0.06	16.09	0.01	2.256	7.62	1.03	8.1	91.9	0.0	-5.36	0.76	0.80	1.99	3.9	0.003	0.76	0.0	0.04	17.07	0.00	2.227	12.92	0.64	5.3	94.7	0.0	-1.50	1.24	0.75	0.78	1.19	7685	1007	4	0	0	0	0	logfile
✔	6QNU	4609	2022-12-11	2019-02-12	3.8	3.99	—	3.9	0.004	0.91	0.0	0.06	13.91	0.01	2.324	3.68	0.61	10.0	90.0	0.0	-4.05	0.77	0.81	2.85	3.9	0.003	0.66	0.0	0.05	16.13	0.00	2.141	10.68	0.49	8.1	91.9	0.0	-2.32	1.25	0.77	0.81	2.17	7250	920	5	0	0	0	0	logfile
✔	6QNT	4608	2022-12-11	2019-02-12	3.5	3.70	—	3.7	0.004	0.85	0.0	0.05	13.95	0.01	2.329	2.96	0.15	7.7	92.3	0.0	-4.25	0.77	0.83	3.32	3.7	0.003	0.67	0.0	0.04	15.74	0.00	2.123	10.02	0.62	7.2	92.8	0.0	-2.12	0.54	0.76	0.83	3.12	5774	733	4	0	0	0	0	logfile
✔	6FE8	4241	2022-12-12	2017-12-30	3.7	3.80	3.71	3.8	0.004	0.90	0.0	0.05	10.19	0.01	2.283	4.16	0.45	5.5	94.4	0.1	-3.46	0.72	0.78	2.51	3.8	0.003	0.64	0.0	0.04	15.34	0.00	2.198	11.19	0.30	5.6	94.4	0.0	0.85	1.37	0.73	0.79	1.59	12479	1547	4	0	0	0	0	logfile
✔	3J9R	6271	2022-12-19	2015-02-17	3.9	3.83	—	3.8	0.006	0.89	0.0	0.04	9.86	0.00	2.112	3.86	0.89	14.5	80.8	4.7	-5.43	0.59	0.82	2.58	3.8	0.005	0.75	0.0	0.04	15.72	0.00	2.013	15.42	0.65	10.0	89.0	1.0	-2.00	1.33	0.63	0.83	1.97	103824	13788	36	0	0	0	0	logfile
✔	6SXo	10344	2022-12-13	2019-09-26	3.3	3.36	—	3.3	0.009	1.35	0.0	0.07	16.45	0.01	2.142	6.10	1.16	4.7	95.3	0.0	-4.39	0.26	0.72	2.92	3.3	0.003	0.59	0.0	0.03	16.64	0.00	2.121	10.83	0.70	3.3	96.7	0.0	-1.07	0.68	0.26	0.77	2.06	14894	973	8	326	0	0	0	logfile
✔	6oSA	20181	2022-12-12	2019-05-01	3.0	3.37	—	3.3	0.008	1.08	0.0	0.06	11.09	0.01	2.210	4.70	0.00	3.5	96.5	0.0	-2.75	0.62	0.78	3.28	3.3	0.005	0.74	0.0	0.04	16.44	0.00	2.147	12.23	3.76	4.3	95.7	0.0	0.38	1.68	0.61	0.79	2.46	7338	937	5	0	0	0	0	logfile

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