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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6MGV | 9112 | 2022-12-12 | 2018-09-15 | 3.1 | 3.21 | 3.10 | 3.2 | 0.018 | 1.44 | 0.0 | 0.08 | 9.73 | 0.01 | 2.082 | 3.09 | 0.00 | 3.4 | 96.5 | 0.2 | -0.38 | 0.70 | 0.83 | 4.59 | 3.2 | 0.003 | 0.62 | 0.0 | 0.04 | 13.83 | 0.00 | 1.992 | 7.22 | 0.28 | 3.8 | 96.2 | 0.0 | 1.46 | 2.11 | 0.67 | 0.84 | 2.96 | 10150 | 1268 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RVX | 10016 | 2022-12-12 | 2019-06-03 | 3.61 | 3.75 | 3.53 | 3.8 | 0.006 | 0.99 | 0.0 | 0.05 | 14.07 | 0.01 | 2.261 | 5.00 | 0.29 | 8.0 | 92.0 | 0.0 | -5.46 | 0.65 | 0.80 | 1.54 | 3.8 | 0.003 | 0.70 | 0.0 | 0.04 | 15.26 | 0.00 | 2.181 | 9.35 | 0.39 | 4.5 | 95.5 | 0.0 | -0.61 | 1.15 | 0.63 | 0.79 | 0.95 | 9627 | 1290 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9X | 6310 | 2022-12-14 | 2015-03-21 | 3.8 | 3.84 | — | 3.8 | 0.014 | 1.24 | 0.0 | 0.08 | 13.09 | 0.02 | 2.369 | 3.42 | 0.48 | 2.8 | 95.6 | 1.6 | -0.65 | 0.51 | 0.57 | 0.47 | 3.8 | 0.005 | 0.76 | 0.0 | 0.04 | 16.22 | 0.01 | 2.070 | 21.17 | 0.53 | 2.4 | 97.6 | 0.0 | 1.81 | 1.19 | 0.63 | 0.79 | 2.10 | 70702 | 7424 | 60 | 696 | 0 | 0 | 0 | logfile |
✔ | 6QZF | 4685 | 2022-12-14 | 2019-03-11 | 3.8 | 4.25 | — | 4.1 | 0.010 | 1.06 | 0.0 | 0.06 | 10.18 | 0.01 | 2.143 | 10.35 | 0.16 | 9.8 | 90.1 | 0.0 | -4.87 | 0.67 | 0.72 | 0.54 | 4.1 | 0.005 | 0.94 | 0.0 | 0.05 | 17.06 | 0.00 | 2.016 | 28.21 | 1.13 | 9.3 | 90.7 | 0.0 | -2.07 | 1.74 | 0.66 | 0.72 | 0.29 | 71628 | 8880 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QX8 | 4663 | 2022-12-20 | 2019-03-07 | 4.07 | 4.05 | — | 4.0 | 0.008 | 0.94 | 0.0 | 0.05 | 15.12 | 0.01 | 1.805 | 11.25 | 0.14 | 8.0 | 91.9 | 0.2 | -3.75 | 0.74 | 0.73 | — | 4.0 | 0.004 | 0.68 | 0.0 | 0.04 | 14.67 | 0.00 | 1.907 | 16.35 | 0.05 | 8.6 | 91.3 | 0.0 | -1.50 | 1.29 | 0.74 | 0.73 | — | 38594 | 2384 | 8 | 24 | 0 | 0 | 19050 | logfile |
✔ | 6VQW | 21359 | 2022-12-14 | 2020-02-06 | 3.42 | 4.18 | — | 4.0 | 0.010 | 0.94 | 0.0 | 0.06 | 15.46 | 0.01 | 2.245 | 8.00 | 0.57 | 13.1 | 86.9 | 0.0 | -5.04 | 0.78 | 0.79 | 1.92 | 4.0 | 0.003 | 0.62 | 0.0 | 0.04 | 16.14 | 0.00 | 2.125 | 13.52 | 0.37 | 8.0 | 92.0 | 0.0 | -2.14 | 0.45 | 0.79 | 0.81 | 1.33 | 20479 | 2648 | 11 | 40 | 0 | 0 | 0 | logfile |
✔ | 5H1R | 9571 | 2022-12-22 | 2016-10-11 | 3.6 | 4.23 | — | 4.2 | 0.014 | 1.36 | 0.0 | 0.07 | 13.16 | 0.01 | 1.968 | 31.49 | 0.94 | 12.9 | 85.7 | 1.4 | -6.24 | 0.54 | 0.74 | 1.84 | 4.2 | 0.004 | 1.01 | 0.0 | 0.05 | 17.27 | 0.01 | 2.148 | 15.75 | 0.70 | 10.0 | 89.5 | 0.6 | -1.75 | 1.06 | 0.56 | 0.75 | 1.18 | 47440 | 5760 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CAA | 7441 | 2022-12-11 | 2018-01-29 | 3.9 | 3.97 | — | 3.9 | 0.009 | 1.33 | 0.0 | 0.07 | 12.41 | 0.01 | 1.886 | 9.42 | 0.00 | 13.0 | 87.0 | 0.0 | -6.23 | 0.64 | 0.79 | 1.91 | 3.9 | 0.003 | 0.86 | 0.0 | 0.04 | 15.83 | 0.00 | 2.180 | 13.35 | 0.12 | 10.6 | 89.4 | 0.0 | -1.13 | 2.15 | 0.65 | 0.79 | 1.41 | 7508 | 954 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6iJZ | 9682 | 2022-12-12 | 2018-10-12 | 3.68 | 3.76 | — | 3.7 | 0.008 | 1.11 | 0.0 | 0.06 | 10.64 | 0.01 | 2.000 | 4.54 | 0.69 | 10.9 | 88.8 | 0.3 | -5.03 | 0.57 | 0.80 | 2.19 | 3.7 | 0.003 | 0.75 | 0.0 | 0.04 | 15.33 | 0.00 | 2.030 | 10.36 | 0.52 | 9.2 | 90.6 | 0.1 | -0.44 | 1.50 | 0.59 | 0.80 | 1.65 | 10964 | 1366 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6H5S | 0142 | 2022-12-21 | 2018-07-25 | 3.3 | 3.45 | — | 3.4 | 0.010 | 1.12 | 0.0 | 0.06 | 10.77 | 0.01 | 1.817 | 7.18 | 0.65 | 7.3 | 92.7 | 0.0 | -5.39 | 0.51 | 0.88 | 4.96 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 15.04 | 0.00 | 2.116 | 8.57 | 0.30 | 3.3 | 96.7 | 0.0 | -0.13 | 0.63 | 0.53 | 0.90 | 3.33 | 44700 | 5445 | 30 | 90 | 0 | 0 | 0 | logfile |
✔ | 6CU8 | 7619 | 2022-12-11 | 2018-03-23 | 3.6 | 3.65 | — | 4.2 | 0.004 | 0.73 | 0.0 | 0.06 | 7.75 | 0.00 | 2.412 | 6.41 | 0.00 | 5.1 | 94.9 | 0.0 | -2.86 | 0.45 | 0.73 | -0.16 | 4.2 | 0.005 | 0.79 | 0.0 | 0.06 | 12.89 | 0.00 | 2.161 | 16.36 | 0.65 | 15.9 | 84.1 | 0.0 | -3.37 | 1.79 | 0.42 | 0.73 | 2.58 | 2880 | 410 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RWX | 10045 | 2022-12-14 | 2019-06-06 | 3.55 | 3.70 | 3.33 | 3.6 | 0.009 | 0.89 | 0.0 | 0.06 | 9.10 | 0.01 | 2.192 | 3.34 | 0.00 | 8.3 | 91.7 | 0.0 | -2.76 | 0.81 | 0.86 | 3.14 | 3.6 | 0.003 | 0.58 | 0.0 | 0.04 | 15.69 | 0.00 | 2.104 | 7.84 | 0.29 | 5.6 | 94.4 | 0.0 | 0.78 | 2.08 | 0.76 | 0.86 | 2.30 | 70968 | 8784 | 48 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QoZ | 4610 | 2022-12-14 | 2019-02-13 | 3.4 | 3.65 | 3.13 | 3.5 | 0.011 | 1.46 | 4.0 | 0.09 | 15.40 | 0.01 | 1.243 | 4.20 | 5.13 | 6.0 | 93.1 | 0.9 | -3.28 | 0.40 | 0.62 | 0.09 | 3.5 | 0.006 | 0.74 | 0.0 | 0.05 | 15.36 | 0.00 | 2.112 | 8.73 | 0.45 | 5.0 | 95.0 | 0.0 | -1.61 | 1.88 | 0.49 | 0.88 | 3.00 | 17987 | 2307 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UAN | 20708 | 2022-12-11 | 2019-09-11 | 3.9 | 4.03 | — | 3.9 | 0.007 | 0.95 | 0.0 | 0.06 | 16.09 | 0.01 | 2.256 | 7.62 | 1.03 | 8.1 | 91.9 | 0.0 | -5.36 | 0.76 | 0.80 | 1.99 | 3.9 | 0.003 | 0.76 | 0.0 | 0.04 | 17.07 | 0.00 | 2.227 | 12.92 | 0.64 | 5.3 | 94.7 | 0.0 | -1.50 | 1.24 | 0.75 | 0.78 | 1.19 | 7685 | 1007 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QNU | 4609 | 2022-12-11 | 2019-02-12 | 3.8 | 3.99 | — | 3.9 | 0.004 | 0.91 | 0.0 | 0.06 | 13.91 | 0.01 | 2.324 | 3.68 | 0.61 | 10.0 | 90.0 | 0.0 | -4.05 | 0.77 | 0.81 | 2.85 | 3.9 | 0.003 | 0.66 | 0.0 | 0.05 | 16.13 | 0.00 | 2.141 | 10.68 | 0.49 | 8.1 | 91.9 | 0.0 | -2.32 | 1.25 | 0.77 | 0.81 | 2.17 | 7250 | 920 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QNT | 4608 | 2022-12-11 | 2019-02-12 | 3.5 | 3.70 | — | 3.7 | 0.004 | 0.85 | 0.0 | 0.05 | 13.95 | 0.01 | 2.329 | 2.96 | 0.15 | 7.7 | 92.3 | 0.0 | -4.25 | 0.77 | 0.83 | 3.32 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 15.74 | 0.00 | 2.123 | 10.02 | 0.62 | 7.2 | 92.8 | 0.0 | -2.12 | 0.54 | 0.76 | 0.83 | 3.12 | 5774 | 733 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6FE8 | 4241 | 2022-12-12 | 2017-12-30 | 3.7 | 3.80 | 3.71 | 3.8 | 0.004 | 0.90 | 0.0 | 0.05 | 10.19 | 0.01 | 2.283 | 4.16 | 0.45 | 5.5 | 94.4 | 0.1 | -3.46 | 0.72 | 0.78 | 2.51 | 3.8 | 0.003 | 0.64 | 0.0 | 0.04 | 15.34 | 0.00 | 2.198 | 11.19 | 0.30 | 5.6 | 94.4 | 0.0 | 0.85 | 1.37 | 0.73 | 0.79 | 1.59 | 12479 | 1547 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9R | 6271 | 2022-12-19 | 2015-02-17 | 3.9 | 3.83 | — | 3.8 | 0.006 | 0.89 | 0.0 | 0.04 | 9.86 | 0.00 | 2.112 | 3.86 | 0.89 | 14.5 | 80.8 | 4.7 | -5.43 | 0.59 | 0.82 | 2.58 | 3.8 | 0.005 | 0.75 | 0.0 | 0.04 | 15.72 | 0.00 | 2.013 | 15.42 | 0.65 | 10.0 | 89.0 | 1.0 | -2.00 | 1.33 | 0.63 | 0.83 | 1.97 | 103824 | 13788 | 36 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SXo | 10344 | 2022-12-13 | 2019-09-26 | 3.3 | 3.36 | — | 3.3 | 0.009 | 1.35 | 0.0 | 0.07 | 16.45 | 0.01 | 2.142 | 6.10 | 1.16 | 4.7 | 95.3 | 0.0 | -4.39 | 0.26 | 0.72 | 2.92 | 3.3 | 0.003 | 0.59 | 0.0 | 0.03 | 16.64 | 0.00 | 2.121 | 10.83 | 0.70 | 3.3 | 96.7 | 0.0 | -1.07 | 0.68 | 0.26 | 0.77 | 2.06 | 14894 | 973 | 8 | 326 | 0 | 0 | 0 | logfile |
✔ | 6oSA | 20181 | 2022-12-12 | 2019-05-01 | 3.0 | 3.37 | — | 3.3 | 0.008 | 1.08 | 0.0 | 0.06 | 11.09 | 0.01 | 2.210 | 4.70 | 0.00 | 3.5 | 96.5 | 0.0 | -2.75 | 0.62 | 0.78 | 3.28 | 3.3 | 0.005 | 0.74 | 0.0 | 0.04 | 16.44 | 0.00 | 2.147 | 12.23 | 3.76 | 4.3 | 95.7 | 0.0 | 0.38 | 1.68 | 0.61 | 0.79 | 2.46 | 7338 | 937 | 5 | 0 | 0 | 0 | 0 | logfile |