Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6KFH	9973	2023-11-17	2019-07-07	3.6	3.70	—	3.7	0.007	0.73	0.0	0.05	14.75	0.00	2.255	9.85	0.00	12.3	87.7	0.0	-3.15	0.66	0.82	0.94	3.7	0.003	0.71	0.0	0.04	17.60	0.00	2.197	9.34	0.41	8.2	91.8	0.0	0.16	0.63	0.61	0.81	0.91	20840	2544	8	0	0	0	0	logfile
✔	8E78	27937	2023-11-17	2022-08-23	2.77	3.98	2.83	3.3	0.006	0.63	0.0	0.04	14.26	0.00	2.218	11.37	0.00	6.9	93.1	0.0	-3.00	0.68	0.62	3.15	3.4	0.004	0.71	0.0	0.04	15.49	0.00	2.192	13.05	0.85	5.7	94.3	0.0	0.07	1.17	0.90	0.86	2.99	17512	2224	4	0	0	0	0	logfile
✔	6ENF	3898	2023-11-21	2017-10-04	3.2	3.22	—	3.2	0.003	0.75	1.0	0.04	13.88	0.01	1.244	4.82	0.53	8.0	91.7	0.3	-4.83	0.75	0.78	2.02	3.2	0.004	0.64	0.0	0.04	15.46	0.00	1.954	10.37	0.62	9.2	90.6	0.2	-2.04	1.27	0.80	0.85	2.11	140797	5531	53	4546	0	0	0	logfile
✔	3LoS	5137	2023-11-15	2010-02-04	4.3	2.98	—	3.0	0.008	2.44	224.0	0.19	19.87	0.01	2.259	87.93	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.2	0.004	1.16	0.0	0.05	15.91	0.01	2.171	27.07	0.03	20.2	75.7	4.1	-4.25	1.37	0.62	0.54	—	63712	8512	16	0	0	0	0	logfile
✔	7QLA	14066	2023-11-14	2021-12-20	3.85	3.91	3.77	3.9	0.003	0.62	0.0	0.04	13.83	0.00	2.117	13.19	0.00	6.4	93.6	0.0	-1.33	0.72	0.76	1.18	3.8	0.003	0.76	0.0	0.04	15.73	0.00	2.136	14.14	0.41	5.3	94.7	0.0	-0.81	0.52	0.73	0.76	1.64	6837	874	2	0	0	0	0	logfile
✘	7VGS	31978	2023-11-16	2021-09-18	2.8	3.28	—	3.3	0.002	0.66	0.0	0.04	12.19	0.01	2.230	9.89	0.38	7.0	93.0	0.0	-1.16	0.67	0.75	2.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9700	1254	6	0	0	0	0	logfile
✔	7W9F	32366	2023-11-13	2021-12-09	3.6	2.59	—	2.2	0.003	0.73	0.0	0.05	13.99	0.01	2.302	3.37	0.00	3.7	96.3	0.0	-3.66	0.73	0.72	1.95	3.2	0.003	0.63	0.0	0.04	16.02	0.00	2.165	10.00	0.55	4.0	96.0	0.0	-1.02	0.53	0.74	0.73	1.84	4856	625	3	0	0	0	0	logfile
✘	6XWR	10636	2023-11-14	2020-01-24	3.22	3.96	—	3.7	0.008	0.75	0.0	0.05	12.81	0.00	2.122	11.13	0.00	5.7	94.3	0.0	-2.71	0.74	0.85	2.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9564	1278	3	0	0	0	0	logfile
✔	7T5P	25706	2023-11-15	2021-12-13	3.4	3.23	3.35	2.2	0.003	0.59	0.0	0.04	17.85	0.00	1.971	15.30	0.39	4.7	95.3	0.0	1.09	0.76	0.73	0.61	2.2	0.003	0.60	0.0	0.04	17.97	0.00	1.945	16.04	0.52	5.4	94.6	0.0	1.62	0.38	0.77	0.74	0.50	13597	822	2	0	0	0	6866	logfile
✘	6RW6	10033	2023-11-22	2019-06-04	2.75	2.81	—	2.7	0.011	0.96	0.0	0.06	9.75	0.01	2.148	4.16	0.00	2.2	97.8	0.0	-3.68	0.85	0.87	4.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	98645	12425	5	0	0	0	0	logfile
✔	7WUR	32839	2023-11-14	2022-02-09	3.5	4.22	—	3.7	0.003	0.68	0.0	0.04	14.34	0.00	2.211	11.28	0.31	7.6	92.4	0.0	-1.48	0.79	0.85	2.51	3.7	0.008	0.88	0.0	0.05	14.98	0.00	2.110	17.32	0.31	9.6	90.4	0.0	-1.31	0.39	0.79	0.85	2.61	8922	1134	6	0	0	0	0	logfile
✔	7XJJ	33229	2023-11-14	2022-04-18	3.3	3.59	3.37	3.6	0.007	0.88	5.0	0.07	14.11	0.01	1.771	16.14	0.96	5.1	94.9	0.0	0.40	0.60	0.72	2.40	3.7	0.004	0.66	0.0	0.04	15.91	0.00	2.132	12.83	0.32	4.7	95.3	0.0	0.54	0.39	0.58	0.73	1.88	8710	1126	6	0	0	0	0	logfile
✔	8D67	27219	2023-11-15	2022-06-06	3.3	3.45	2.92	3.5	0.009	0.97	0.0	0.07	13.90	0.01	2.261	6.52	0.36	7.5	92.5	0.0	-1.52	0.68	0.82	3.08	3.5	0.002	0.49	0.0	0.04	15.33	0.00	2.247	4.52	0.22	4.5	95.5	0.0	-0.19	1.17	0.69	0.83	2.67	12570	1540	10	0	0	0	0	logfile
✔	7ELD	31181	2023-11-15	2021-04-09	4.6	9.12	—	7.4	0.012	1.41	6.0	0.11	17.54	0.00	2.446	8.52	10.68	2.9	96.2	0.9	3.37	0.79	0.50	—	7.1	0.003	0.70	0.0	0.04	15.73	0.00	2.064	26.06	0.00	5.4	94.1	0.5	0.12	1.44	0.88	0.77	—	11282	1137	2	109	0	0	0	logfile
✔	7WiC	32528	2023-11-14	2022-01-03	2.8	2.21	—	1.9	0.005	0.62	0.0	0.05	12.93	0.00	2.176	7.87	0.00	2.7	97.3	0.0	0.61	0.76	0.76	3.53	1.9	0.003	0.58	0.0	0.04	15.57	0.00	2.173	7.26	1.11	3.1	96.9	0.0	1.17	0.37	0.78	0.80	3.11	9048	1158	6	0	0	0	0	logfile
✔	7LV9	23530	2023-11-14	2021-02-24	4.5	7.82	4.59	4.4	0.003	0.64	0.0	0.04	27.26	0.00	1.334	3.02	0.00	3.2	96.8	0.0	-3.35	0.82	0.66	—	4.4	0.005	0.67	0.0	0.04	29.32	0.00	2.143	21.19	0.00	3.9	96.1	0.0	1.21	1.93	0.90	0.85	—	8238	581	8	190	0	0	0	logfile
✔	7oHC	12900	2023-11-15	2021-05-10	2.5	3.15	—	2.9	0.005	0.86	0.0	0.05	29.78	0.01	2.193	4.51	0.16	1.9	98.1	0.0	0.04	0.84	0.82	3.50	2.9	0.004	0.60	0.0	0.03	29.27	0.00	2.138	8.09	1.57	2.1	97.9	0.0	2.63	1.12	0.86	0.86	2.93	12019	764	10	290	0	0	0	logfile
✔	8G6N	29775	2023-11-18	2023-02-15	3.5	3.27	3.51	3.2	0.004	0.74	0.0	0.04	16.67	0.01	2.047	4.48	0.17	2.6	97.4	0.0	1.92	0.61	0.74	1.62	3.2	0.003	0.52	0.0	0.04	16.72	0.00	1.966	7.00	0.17	2.6	97.4	0.0	2.40	0.35	0.62	0.78	1.62	21450	1379	7	0	0	0	10672	logfile
✔	7W53	32313	2023-11-17	2021-11-29	3.2	2.94	—	3.0	0.007	0.86	1.0	0.05	12.62	0.00	1.769	6.17	0.63	3.9	96.1	0.0	-0.67	0.58	0.76	3.10	3.0	0.005	0.63	0.0	0.04	15.50	0.00	1.841	10.73	0.32	4.7	95.3	0.0	0.62	0.84	0.57	0.78	2.46	17354	1109	6	0	0	0	8644	logfile
✔	7TJY	25946	2023-11-17	2022-01-17	3.8	4.84	3.78	3.6	0.020	2.29	0.0	0.00	6.75	0.01	2.333	0.12	0.00	4.3	94.3	1.5	-0.54	0.59	0.68	—	3.6	0.004	0.79	0.0	0.00	4.84	0.00	2.161	3.93	0.00	9.8	90.0	0.3	0.68	1.48	0.82	0.86	—	20228	5056	27	0	0	0	0	logfile

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