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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7N9W | 24263 | 2024-03-11 | 2021-06-18 | 4.16 | 4.20 | — | 4.2 | 0.005 | 1.08 | 0.0 | 0.06 | 14.64 | 0.01 | 2.258 | 5.10 | 1.40 | 6.7 | 93.2 | 0.1 | -5.14 | 0.63 | 0.77 | — | 4.1 | 0.003 | 0.74 | 0.0 | 0.04 | 14.21 | 0.00 | 2.179 | 12.54 | 0.00 | 6.2 | 93.8 | 0.0 | -1.12 | 0.59 | 0.65 | 0.78 | — | 6561 | 890 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 6KUP | 9579 | 2024-03-15 | 2019-09-02 | 4.3 | 4.37 | — | 4.3 | 0.004 | 0.81 | 0.0 | 0.05 | 11.44 | 0.01 | 2.227 | 6.50 | 0.16 | 7.1 | 92.6 | 0.2 | -4.90 | 0.71 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12254 | 1461 | 5 | 23 | 0 | 0 | 0 | logfile |
✔ | 6WKT | 21708 | 2024-03-10 | 2020-04-16 | 3.4 | 3.21 | 3.09 | 3.3 | 0.004 | 0.81 | 0.0 | 0.05 | 13.97 | 0.01 | 2.329 | 0.00 | 0.00 | 1.9 | 98.1 | 0.0 | -3.42 | 0.65 | 0.75 | 3.69 | 3.3 | 0.002 | 0.55 | 0.0 | 0.03 | 16.09 | 0.00 | 2.218 | 9.65 | 0.00 | 3.8 | 96.2 | 0.0 | 4.32 | 1.34 | 0.63 | 0.74 | 3.16 | 3152 | 424 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MQi | 23948 | 2024-03-19 | 2021-05-05 | 3.21 | 3.01 | 3.19 | 3.2 | 0.006 | 0.79 | 0.0 | 0.05 | 13.51 | 0.00 | 2.202 | 2.71 | 0.59 | 1.4 | 98.6 | 0.0 | 0.80 | 0.67 | 0.81 | 4.51 | 3.1 | 0.003 | 0.47 | 0.0 | 0.04 | 15.20 | 0.00 | 2.285 | 3.19 | 1.35 | 2.6 | 97.4 | 0.0 | 1.40 | 1.79 | 0.74 | 0.86 | 4.35 | 12696 | 1640 | 16 | 16 | 0 | 0 | 0 | logfile |
✔ | 5XWY | 6777 | 2024-03-15 | 2017-06-30 | 3.2 | 3.25 | — | 3.2 | 0.008 | 1.18 | 1.0 | 0.06 | 14.68 | 0.00 | 2.263 | 3.64 | 0.87 | 7.6 | 92.3 | 0.1 | -5.96 | 0.69 | 0.78 | 3.96 | 3.2 | 0.004 | 0.72 | 0.0 | 0.04 | 17.62 | 0.00 | 2.075 | 11.21 | 2.80 | 7.5 | 92.5 | 0.0 | -0.41 | 1.39 | 0.77 | 0.88 | 3.27 | 10493 | 1117 | 2 | 51 | 0 | 0 | 0 | logfile |
✔ | 7JZY | 22584 | 2024-03-19 | 2020-09-02 | 3.6 | 3.61 | — | 3.6 | 0.009 | 0.96 | 0.0 | 0.05 | 17.37 | 0.01 | 2.236 | 5.63 | 0.85 | 7.0 | 93.0 | 0.0 | -3.78 | 0.81 | 0.85 | 2.54 | 3.5 | 0.004 | 0.76 | 1.0 | 0.04 | 18.31 | 0.00 | 2.092 | 11.13 | 2.78 | 6.8 | 93.2 | 0.0 | -0.68 | 0.49 | 0.81 | 0.84 | 2.13 | 24539 | 3024 | 12 | 61 | 0 | 0 | 0 | logfile |
✔ | 7R9K | 24328 | 2024-03-11 | 2021-06-29 | 4.1 | 4.93 | — | 4.0 | 0.002 | 0.35 | 0.0 | 0.04 | 4.65 | 0.00 | 2.223 | 3.24 | 0.00 | 10.3 | 89.1 | 0.6 | -4.05 | 0.83 | 0.71 | — | 4.1 | 0.002 | 0.53 | 0.0 | 0.04 | 8.08 | 0.00 | 1.906 | 9.97 | 0.00 | 4.4 | 95.6 | 0.0 | 0.09 | 2.08 | 0.89 | 0.83 | — | 7726 | 505 | 1 | 0 | 0 | 0 | 3938 | logfile |
✔ | 6V9X | 21129 | 2024-03-17 | 2019-12-16 | 3.3 | 3.52 | 3.34 | 3.5 | 0.005 | 0.90 | 0.0 | 0.05 | 15.21 | 0.01 | 2.280 | 3.52 | 1.24 | 3.9 | 96.1 | 0.0 | -5.84 | 0.74 | 0.80 | 1.79 | 3.5 | 0.003 | 0.65 | 0.0 | 0.04 | 16.33 | 0.00 | 2.093 | 8.87 | 3.58 | 4.1 | 95.9 | 0.0 | 0.89 | 1.36 | 0.76 | 0.83 | 1.94 | 18084 | 2284 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K8C | 22726 | 2024-03-15 | 2020-09-26 | 4.27 | 4.22 | — | 4.2 | 0.004 | 0.84 | 2.0 | 0.05 | 13.70 | 0.01 | 2.196 | 12.83 | 0.85 | 3.2 | 96.8 | 0.0 | 0.14 | 0.47 | 0.56 | — | 4.2 | 0.003 | 0.80 | 0.0 | 0.04 | 13.36 | 0.01 | 2.193 | 13.37 | 0.17 | 4.5 | 95.5 | 0.0 | 0.49 | 0.64 | 0.50 | 0.61 | — | 5524 | 723 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WTZ | 21900 | 2024-03-11 | 2020-05-04 | 3.15 | 3.04 | — | 3.1 | 0.004 | 0.84 | 0.0 | 0.05 | 15.73 | 0.00 | 2.301 | 2.97 | 5.70 | 6.5 | 93.5 | 0.0 | -2.14 | 0.54 | 0.72 | 4.27 | 3.0 | 0.005 | 0.71 | 0.0 | 0.05 | 16.88 | 0.00 | 2.134 | 11.93 | 6.59 | 7.1 | 92.9 | 0.0 | -1.26 | 1.18 | 0.65 | 0.79 | 3.45 | 7917 | 1020 | 6 | 0 | 0 | 36 | 0 | logfile |
✔ | 5XB1 | 6714 | 2024-03-21 | 2017-03-15 | 3.0 | 3.16 | 2.84 | 3.1 | 0.007 | 0.71 | 0.0 | 0.05 | 10.82 | 0.00 | 2.173 | 4.34 | 0.00 | 2.0 | 98.0 | 0.0 | -6.31 | 0.80 | 0.88 | 4.19 | 3.1 | 0.003 | 0.56 | 0.0 | 0.04 | 17.96 | 0.00 | 2.173 | 2.70 | 1.79 | 2.2 | 97.8 | 0.0 | 3.51 | 0.67 | 0.79 | 0.86 | 2.73 | 30847 | 3720 | 48 | 0 | 0 | 55 | 0 | logfile |
✔ | 7N8P | 24241 | 2024-03-11 | 2021-06-15 | 3.42 | 3.72 | — | 3.7 | 0.005 | 0.89 | 0.0 | 0.05 | 14.42 | 0.01 | 2.276 | 4.27 | 0.29 | 5.9 | 94.1 | 0.0 | -5.50 | 0.73 | 0.80 | 1.99 | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 15.53 | 0.00 | 2.155 | 8.17 | 2.51 | 4.8 | 95.2 | 0.0 | -0.47 | 0.36 | 0.70 | 0.84 | 1.22 | 6758 | 900 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VVK | 32142 | 2024-03-11 | 2021-11-06 | 3.3 | 2.24 | 3.30 | 3.3 | 0.015 | 1.75 | 0.0 | 0.09 | 13.87 | 0.01 | 2.220 | 7.68 | 0.47 | 4.2 | 95.6 | 0.2 | -0.92 | 0.62 | 0.71 | 2.44 | 3.3 | 0.002 | 0.56 | 0.0 | 0.04 | 16.58 | 0.00 | 2.160 | 9.37 | 2.23 | 2.9 | 97.1 | 0.0 | 0.60 | 1.26 | 0.66 | 0.72 | 1.49 | 8516 | 1121 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WYK | 21967 | 2024-03-10 | 2020-05-13 | 4.0 | 4.14 | — | 4.2 | 0.007 | 0.77 | 0.0 | 0.05 | 11.98 | 0.00 | 2.223 | 5.97 | 0.00 | 3.4 | 96.6 | 0.0 | -2.28 | 0.62 | 0.77 | — | 4.2 | 0.004 | 0.77 | 0.0 | 0.04 | 16.10 | 0.00 | 2.204 | 10.05 | 4.29 | 1.9 | 98.1 | 0.0 | 2.01 | 0.80 | 0.62 | 0.78 | — | 3083 | 415 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XT9 | 10617 | 2024-03-17 | 2020-01-15 | 3.8 | 4.11 | 3.85 | 3.9 | 0.005 | 1.00 | 0.0 | 0.06 | 16.30 | 0.01 | 2.285 | 6.35 | 0.34 | 9.4 | 90.3 | 0.3 | -5.57 | 0.83 | 0.79 | 1.19 | 3.9 | 0.006 | 0.84 | 0.0 | 0.05 | 17.26 | 0.00 | 2.046 | 18.19 | 3.09 | 10.4 | 89.5 | 0.1 | -2.18 | 0.62 | 0.84 | 0.80 | 1.16 | 16916 | 2183 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 5ZAL | 6905 | 2024-03-15 | 2018-02-07 | 4.7 | 4.44 | — | 3.8 | 0.008 | 1.44 | 1.0 | 0.07 | 15.07 | 0.01 | 2.215 | 19.06 | 0.97 | 16.1 | 83.2 | 0.7 | -5.19 | 0.87 | 0.74 | — | 3.8 | 0.003 | 0.84 | 0.0 | 0.05 | 15.04 | 0.01 | 2.110 | 26.45 | 0.00 | 13.4 | 86.3 | 0.2 | -2.86 | 0.84 | 0.84 | 0.61 | — | 12346 | 1389 | 3 | 58 | 0 | 0 | 0 | logfile |
✔ | 8H69 | 34497 | 2024-03-17 | 2022-10-16 | 3.7 | 3.79 | 3.34 | 3.7 | 0.009 | 1.12 | 0.0 | 0.06 | 12.85 | 0.01 | 1.917 | 7.93 | 1.52 | 7.5 | 92.4 | 0.2 | -4.98 | 0.77 | 0.74 | 2.05 | 3.7 | 0.003 | 0.78 | 0.0 | 0.04 | 16.00 | 0.00 | 2.076 | 16.27 | 3.09 | 5.7 | 94.3 | 0.0 | -1.96 | 0.97 | 0.78 | 0.76 | 1.43 | 18028 | 2153 | 5 | 37 | 0 | 0 | 0 | logfile |
✔ | 6VRB | 21366 | 2024-03-15 | 2020-02-07 | 3.0 | 3.08 | — | 3.1 | 0.009 | 1.20 | 2.0 | 0.08 | 16.05 | 0.01 | 1.877 | 16.10 | 3.12 | 7.9 | 92.1 | 0.0 | -4.13 | 0.74 | 0.77 | 2.24 | 3.1 | 0.002 | 0.62 | 0.0 | 0.04 | 18.94 | 0.00 | 2.188 | 6.17 | 1.94 | 5.6 | 94.4 | 0.0 | -0.02 | 1.42 | 0.79 | 0.87 | 1.99 | 11581 | 1260 | 3 | 52 | 0 | 0 | 0 | logfile |
✔ | 5G2X | 3331 | 2024-03-17 | 2016-04-16 | 3.8 | 3.49 | — | 3.4 | 0.001 | 0.32 | 0.0 | 0.02 | 21.03 | 0.00 | 2.219 | 4.36 | 0.45 | 19.7 | 74.4 | 5.9 | -5.72 | 0.51 | 0.30 | -0.09 | 3.3 | 0.007 | 1.02 | 0.0 | 0.05 | 25.19 | 0.01 | 1.900 | 45.40 | 4.54 | 22.7 | 76.1 | 1.3 | -5.20 | 2.37 | 0.80 | 0.67 | 0.25 | 19072 | 487 | 3 | 704 | 0 | 0 | 0 | logfile |
✔ | 6V69 | 21060 | 2024-03-11 | 2019-12-04 | 4.2 | 4.28 | — | 4.2 | 0.003 | 0.51 | 0.0 | 0.04 | 13.16 | 0.00 | 2.204 | 6.51 | 0.22 | 3.5 | 96.5 | 0.0 | -4.11 | 0.55 | 0.83 | — | 4.2 | 0.003 | 0.64 | 0.0 | 0.04 | 13.50 | 0.00 | 2.181 | 7.53 | 0.11 | 2.8 | 97.2 | 0.0 | 0.56 | 1.47 | 0.55 | 0.83 | — | 8353 | 1027 | 2 | 0 | 0 | 0 | 0 | logfile |