Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6UET	20756	2023-04-20	2019-09-23	4.1	4.91	—	5.1	0.010	1.61	0.0	0.07	15.67	0.02	1.977	4.88	0.00	0.0	0.0	0.0	—	0.62	0.73	—	5.0	0.007	0.95	0.0	0.05	22.46	0.01	1.737	49.85	0.00	0.0	0.0	0.0	—	0.79	0.66	0.81	—	3869	0	1	119	1	0	1291	logfile
✘	6PoM	20416	2023-04-20	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	17.29	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4937	0	2	230	0	0	0	logfile
✔	6UES	20755	2023-04-20	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.14	0.01	1.785	36.43	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	7R6L	24281	2023-04-20	2021-06-22	2.85	3.04	—	3.0	0.008	0.89	0.0	0.05	16.80	0.01	1.985	4.24	0.00	0.0	0.0	0.0	—	0.67	0.86	—	3.0	0.006	0.73	0.0	0.04	16.40	0.01	1.882	7.54	0.00	0.0	0.0	0.0	—	0.09	0.62	0.86	—	7857	0	3	366	20	0	0	logfile
✔	7R6N	24283	2023-04-20	2021-06-22	4.1	3.51	—	3.7	0.006	0.96	0.0	0.04	17.22	0.01	2.036	3.68	0.00	0.0	0.0	0.0	—	0.56	0.75	—	3.7	0.007	0.84	0.0	0.04	17.84	0.01	1.759	18.86	0.00	0.0	0.0	0.0	—	1.27	0.59	0.76	—	7588	0	1	354	12	0	0	logfile
✔	6X64	22069	2023-04-23	2020-05-27	3.7	4.01	—	3.7	0.008	1.34	0.0	0.05	9.32	0.01	2.584	0.78	0.00	0.0	0.0	0.0	—	0.68	0.84	—	3.7	0.009	1.23	0.0	0.05	5.42	0.00	2.111	10.35	0.00	0.0	0.0	0.0	—	2.35	0.69	0.86	—	15840	0	36	0	3168	0	0	logfile
✘	5A7U	3079	2023-04-19	2015-07-10	4.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	1	0	1	0	231	logfile
✔	4UQ8	2676	2023-04-28	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	64.12	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.54	0.0	0.41	5.47	0.00	2.110	23.19	0.00	0.0	0.0	0.0	—	2.11	0.61	0.83	—	28647	33	54	0	5686	0	0	logfile
✔	6FU8	4319	2023-04-19	2018-02-26	3.2	4.43	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.004	0.85	0.0	0.04	15.02	0.00	2.243	16.86	0.00	11.2	87.5	1.2	-1.85	3.09	0.23	0.62	-0.89	1364	82	1	0	0	0	711	logfile
✔	7UiU	26553	2023-04-19	2022-03-29	2.8	3.11	2.72	3.1	0.004	0.62	0.0	0.04	13.60	0.00	2.356	3.35	0.00	4.8	95.2	0.0	-2.09	0.28	0.82	1.99	3.1	0.004	0.96	0.0	0.04	17.04	0.00	2.228	11.74	1.67	4.8	95.2	0.0	-2.17	1.37	0.28	0.89	2.33	607	85	1	0	0	0	0	logfile
✔	7KU5	23034	2023-04-19	2020-11-24	3.76	3.63	—	3.9	0.006	1.29	0.0	0.07	14.85	0.01	2.420	3.63	0.00	12.8	87.2	0.0	-5.41	0.23	0.65	-0.48	3.9	0.002	0.72	0.0	0.04	15.66	0.01	2.252	10.89	0.00	9.3	90.7	0.0	-1.34	1.18	0.24	0.69	2.46	750	88	1	0	4	0	0	logfile
✔	8A05	15048	2023-04-19	2022-05-26	3.4	3.47	3.11	3.5	0.002	0.43	0.0	0.05	12.67	0.00	2.328	2.02	0.00	2.2	97.8	0.0	0.42	0.37	0.84	2.71	3.5	0.003	0.47	0.0	0.05	14.61	0.00	2.266	4.03	0.00	2.2	97.8	0.0	0.40	1.25	0.36	0.85	2.71	764	91	2	0	5	0	0	logfile
✔	5M6S	3451	2023-04-19	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.6	0.003	0.63	0.0	0.03	18.81	0.00	1.995	10.68	0.00	6.2	93.8	0.0	2.64	2.46	0.03	0.08	—	1593	98	1	0	0	0	793	logfile
✔	7X34	32978	2023-04-19	2022-02-27	3.1	5.47	3.73	3.1	0.009	1.17	0.0	0.05	18.59	0.01	2.316	5.71	0.00	3.1	96.9	0.0	-2.86	0.21	0.78	1.18	3.2	0.005	0.85	0.0	0.04	20.14	0.00	2.077	35.35	0.00	5.1	94.9	0.0	0.09	0.71	0.21	0.78	1.18	2762	100	2	94	0	0	0	logfile
✔	7Uo5	26640	2023-04-23	2022-04-12	3.1	3.62	3.02	3.0	0.015	2.22	0.0	0.12	27.60	0.06	2.328	2.33	1.02	6.4	92.7	0.9	-2.73	0.80	0.60	3.19	3.0	0.005	0.85	0.0	0.05	26.39	0.01	1.786	36.13	0.00	13.6	85.5	0.9	-3.83	1.53	0.81	0.66	1.12	13979	112	2	373	7	0	5024	logfile
✔	7Uo2	26638	2023-04-20	2022-04-12	3.1	3.75	—	3.0	0.002	0.55	0.0	0.03	19.04	0.00	2.033	10.61	2.04	14.5	83.6	1.8	-3.16	0.85	0.73	1.50	2.9	0.008	1.02	0.0	0.05	21.41	0.01	1.813	36.07	1.02	19.1	80.9	0.0	-2.91	0.77	0.88	0.81	1.66	6735	112	2	271	3	0	0	logfile
✔	7Uo0	26636	2023-04-21	2022-04-12	3.4	4.47	—	3.5	0.003	2.23	0.0	0.11	24.66	0.00	2.117	7.29	2.04	6.4	93.6	0.0	-0.20	0.73	0.34	1.64	3.4	0.004	0.89	0.0	0.04	26.78	0.01	2.050	25.40	1.02	10.0	90.0	0.0	-3.19	5.62	0.84	0.62	1.35	10697	112	4	455	7	0	0	logfile
✔	7Uo1	26637	2023-04-24	2022-04-12	3.2	3.31	—	3.3	0.002	4.43	0.0	0.10	27.22	0.00	1.799	11.73	0.00	4.5	92.7	2.7	0.03	0.51	0.54	2.38	3.2	0.005	1.86	0.0	0.24	27.85	0.01	1.728	26.76	1.02	7.3	92.7	0.0	-0.76	1.82	0.58	0.66	2.01	16588	112	4	455	10	0	5894	logfile
✔	6RJU	4906	2023-04-19	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	9.8	0.003	0.63	0.0	0.03	15.97	0.00	2.424	6.03	0.00	6.2	93.8	0.0	-0.13	1.31	0.27	0.05	0.48	1992	131	1	0	0	0	997	logfile
✔	5M5H	4155	2023-04-19	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.89	0.0	0.05	12.67	0.01	2.275	23.84	0.00	8.7	91.3	0.0	-1.45	2.20	0.15	0.14	—	1086	132	1	0	0	0	0	logfile

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