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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8G8E | 29846 | 2024-03-10 | 2023-02-17 | 4.2 | 7.38 | 5.01 | 5.9 | 0.004 | 0.73 | 0.0 | 0.04 | 28.39 | 0.00 | 2.277 | 15.90 | 0.79 | 1.5 | 98.5 | 0.0 | 0.35 | 0.81 | 0.66 | — | 6.0 | 0.003 | 0.63 | 0.0 | 0.03 | 27.96 | 0.00 | 2.242 | 14.99 | 0.00 | 2.9 | 97.1 | 0.0 | 0.05 | 1.83 | 0.91 | 0.82 | — | 2464 | 140 | 3 | 64 | 0 | 0 | 0 | logfile |
✔ | 7US9 | 26729 | 2024-03-10 | 2022-04-23 | 3.8 | 3.84 | 3.64 | 3.9 | 0.015 | 1.58 | 0.0 | 0.11 | 7.49 | 0.01 | 2.489 | 3.45 | 0.00 | 2.3 | 97.7 | 0.0 | 1.07 | 0.59 | 0.74 | 4.43 | 3.8 | 0.003 | 0.78 | 0.0 | 0.11 | 11.81 | 0.01 | 2.146 | 5.42 | 1.23 | 1.6 | 98.4 | 0.0 | 0.51 | 1.45 | 0.60 | 0.77 | 2.97 | 1127 | 145 | 3 | 0 | 4 | 0 | 0 | logfile |
✔ | 8A06 | 15051 | 2024-03-10 | 2022-05-26 | 4.0 | 3.63 | 3.78 | 3.8 | 0.003 | 0.56 | 0.0 | 0.05 | 13.75 | 0.00 | 2.201 | 6.79 | 0.73 | 2.8 | 97.2 | 0.0 | -0.86 | 0.27 | 0.78 | — | 3.7 | 0.003 | 0.61 | 0.0 | 0.05 | 17.11 | 0.00 | 2.273 | 4.67 | 8.76 | 4.1 | 95.9 | 0.0 | -1.52 | 0.41 | 0.26 | 0.79 | — | 1185 | 147 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FF3 | 29037 | 2024-03-10 | 2022-12-07 | 3.09 | 2.31 | 2.69 | 3.2 | 0.002 | 0.43 | 0.0 | 0.06 | 8.70 | 0.00 | 2.616 | 1.83 | 0.00 | 0.0 | 100.0 | 0.0 | -2.15 | 0.40 | 0.67 | 4.94 | 3.2 | 0.004 | 0.49 | 0.0 | 0.05 | 11.72 | 0.00 | 2.004 | 5.95 | 0.93 | 1.4 | 98.6 | 0.0 | -2.33 | 0.51 | 0.36 | 0.72 | 4.63 | 2190 | 150 | 6 | 0 | 0 | 0 | 1122 | logfile |
✔ | 7QL2 | 14061 | 2024-03-10 | 2021-12-19 | 2.95 | 2.96 | 2.65 | 3.1 | 0.010 | 2.11 | 2.0 | 0.11 | 10.98 | 0.01 | 2.674 | 0.00 | 0.00 | 7.6 | 92.4 | 0.0 | -2.82 | 0.30 | 0.74 | 4.50 | 3.3 | 0.003 | 0.54 | 0.0 | 0.05 | 12.51 | 0.00 | 2.548 | 1.31 | 1.48 | 10.4 | 89.6 | 0.0 | -3.05 | 1.13 | 0.23 | 0.72 | 3.90 | 2286 | 150 | 3 | 0 | 0 | 0 | 1179 | logfile |
✔ | 5LiJ | 4054 | 2024-03-10 | 2016-07-14 | 4.2 | 3.63 | — | 4.2 | 0.009 | 2.92 | 4.0 | 0.17 | 15.82 | 0.01 | 2.249 | 25.64 | 0.00 | 10.7 | 89.3 | 0.0 | -6.36 | 0.85 | 0.76 | — | 3.8 | 0.005 | 1.17 | 0.0 | 0.04 | 10.44 | 0.00 | 2.149 | 15.78 | 0.00 | 35.3 | 64.7 | 0.0 | -5.53 | 1.48 | 0.86 | 0.78 | — | 761 | 152 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VHL | 21207 | 2024-03-10 | 2020-01-10 | 3.3 | 3.60 | — | 3.5 | 0.007 | 1.03 | 0.0 | 0.07 | 15.85 | 0.01 | 1.791 | 14.51 | 4.48 | 14.7 | 85.3 | 0.0 | -6.30 | 0.26 | 0.70 | 3.54 | 3.6 | 0.003 | 0.71 | 0.0 | 0.04 | 16.46 | 0.00 | 2.331 | 5.80 | 2.99 | 6.7 | 93.3 | 0.0 | -3.62 | 2.72 | 0.27 | 0.70 | 3.42 | 1190 | 158 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oLQ | 16961 | 2024-03-10 | 2023-03-30 | 4.0 | 3.17 | 3.52 | 3.7 | 0.003 | 0.49 | 0.0 | 0.05 | 7.64 | 0.00 | 2.207 | 3.69 | 0.00 | 0.0 | 100.0 | 0.0 | -0.52 | 0.25 | 0.70 | — | 3.4 | 0.002 | 0.47 | 0.0 | 0.05 | 13.94 | 0.00 | 2.277 | 7.79 | 2.40 | 4.7 | 95.3 | 0.0 | -1.51 | 1.42 | 0.24 | 0.70 | — | 2445 | 160 | 5 | 0 | 0 | 0 | 1185 | logfile |
✔ | 7BC5 | 12139 | 2024-03-10 | 2020-12-18 | 3.1 | 3.06 | 3.11 | 3.1 | 0.005 | 1.05 | 0.0 | 0.05 | 15.92 | 0.01 | 2.314 | 7.83 | 0.76 | 8.2 | 91.8 | 0.0 | -5.64 | 0.23 | 0.62 | 0.92 | 3.0 | 0.004 | 0.74 | 0.0 | 0.04 | 17.50 | 0.00 | 2.253 | 17.30 | 8.40 | 9.4 | 90.6 | 0.0 | -3.06 | 1.28 | 0.24 | 0.60 | 1.31 | 1200 | 161 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QK6 | 14039 | 2024-03-10 | 2021-12-17 | 2.27 | 2.34 | 2.17 | 2.3 | 0.011 | 1.84 | 0.0 | 0.09 | 9.70 | 0.01 | 2.520 | 0.00 | 0.00 | 6.4 | 93.6 | 0.0 | -1.99 | 0.37 | 0.79 | 7.78 | 2.3 | 0.003 | 0.60 | 0.0 | 0.05 | 16.13 | 0.00 | 2.371 | 4.46 | 0.69 | 5.8 | 94.2 | 0.0 | -2.05 | 1.45 | 0.38 | 0.85 | 7.07 | 2469 | 162 | 3 | 0 | 0 | 0 | 1278 | logfile |
✔ | 6QJQ | 4566 | 2024-03-10 | 2019-01-24 | 3.7 | 3.99 | 2.14 | 4.1 | 0.021 | 1.17 | 0.0 | 0.11 | 13.36 | 0.01 | 2.499 | 5.58 | 0.00 | 4.0 | 94.0 | 2.0 | -4.41 | 0.39 | 0.75 | 2.60 | 4.1 | 0.003 | 0.74 | 0.0 | 0.05 | 14.32 | 0.00 | 2.354 | 7.97 | 0.00 | 6.0 | 94.0 | 0.0 | -2.75 | 1.23 | 0.37 | 0.74 | 1.67 | 1218 | 162 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QKG | 14041 | 2024-03-10 | 2021-12-17 | 3.36 | 3.19 | 3.09 | 3.4 | 0.010 | 2.03 | 0.0 | 0.10 | 10.76 | 0.01 | 2.528 | 0.00 | 0.00 | 6.4 | 93.6 | 0.0 | -1.98 | 0.38 | 0.80 | 4.23 | 3.5 | 0.003 | 0.61 | 0.0 | 0.05 | 13.59 | 0.00 | 2.243 | 4.46 | 0.00 | 6.4 | 93.6 | 0.0 | -1.39 | 1.16 | 0.35 | 0.83 | 4.80 | 2469 | 162 | 3 | 0 | 0 | 0 | 1278 | logfile |
✔ | 8EX9 | 28655 | 2024-03-10 | 2022-10-25 | 2.96 | 3.27 | 3.00 | 3.2 | 0.003 | 0.49 | 0.0 | 0.03 | 24.07 | 0.00 | 2.200 | 13.65 | 0.79 | 4.3 | 95.7 | 0.0 | -1.52 | 0.60 | 0.71 | 4.83 | 3.2 | 0.004 | 0.58 | 0.0 | 0.03 | 24.00 | 0.00 | 2.154 | 13.79 | 4.76 | 4.9 | 95.1 | 0.0 | -0.69 | 0.22 | 0.62 | 0.72 | 4.21 | 4199 | 166 | 4 | 139 | 0 | 0 | 0 | logfile |
✔ | 8oKR | 16930 | 2024-03-10 | 2023-03-29 | 2.86 | 3.36 | 2.66 | 3.4 | 0.007 | 1.56 | 0.0 | 0.09 | 22.91 | 0.01 | 1.489 | 4.96 | 0.00 | 0.0 | 100.0 | 0.0 | -4.51 | 0.55 | 0.67 | 7.31 | 3.4 | 0.190 | 6.52 | 60.0 | 0.43 | 29.21 | 0.04 | 1.639 | 169.69 | 15.48 | 50.0 | 38.3 | 11.7 | -7.72 | 2.21 | 0.63 | 0.89 | 1.62 | 1608 | 168 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VU8 | 32126 | 2024-03-10 | 2021-11-01 | 3.0 | 4.24 | 3.77 | 4.4 | 0.009 | 1.19 | 0.0 | 0.07 | 16.69 | 0.01 | 2.308 | 9.19 | 4.64 | 9.5 | 90.5 | 0.0 | -5.27 | 0.39 | 0.75 | 3.88 | 4.3 | 0.002 | 0.61 | 0.0 | 0.04 | 19.75 | 0.00 | 2.352 | 5.65 | 1.32 | 4.8 | 95.2 | 0.0 | -1.04 | 1.09 | 0.39 | 0.76 | 2.94 | 1433 | 170 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 3JBS | 6478 | 2024-03-10 | 2015-10-13 | 2.9 | 3.04 | — | 3.2 | 0.010 | 1.32 | 0.0 | 0.06 | 8.67 | 0.01 | 2.510 | 0.00 | 0.00 | 2.9 | 97.1 | 0.0 | 0.51 | 0.21 | 0.76 | 4.15 | 3.0 | 0.003 | 0.64 | 0.0 | 0.04 | 17.82 | 0.00 | 2.204 | 8.27 | 3.29 | 2.9 | 97.1 | 0.0 | 0.53 | 1.83 | 0.21 | 0.82 | 3.71 | 1401 | 175 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7W3T | 32293 | 2024-03-10 | 2021-11-26 | 3.59 | 2.49 | 3.54 | 2.2 | 0.004 | 0.73 | 0.0 | 0.05 | 17.98 | 0.01 | 2.259 | 8.96 | 0.00 | 4.6 | 95.4 | 0.0 | -2.83 | 0.76 | 0.75 | 4.00 | 2.1 | 0.004 | 0.63 | 0.0 | 0.05 | 15.15 | 0.00 | 2.212 | 14.47 | 1.88 | 5.7 | 94.3 | 0.0 | -3.23 | 0.33 | 0.77 | 0.76 | 3.69 | 1455 | 176 | 3 | 0 | 7 | 0 | 0 | logfile |
✔ | 6TGP | 10500 | 2024-03-10 | 2019-11-17 | 4.4 | 4.64 | — | 4.3 | 0.013 | 1.90 | 1.0 | 0.13 | 12.88 | 0.01 | 2.228 | 7.38 | 2.08 | 5.2 | 94.8 | 0.0 | -3.36 | 0.45 | 0.85 | — | 4.1 | 0.002 | 0.64 | 0.0 | 0.04 | 12.53 | 0.00 | 2.295 | 14.39 | 0.00 | 2.9 | 97.1 | 0.0 | 1.45 | 1.80 | 0.45 | 0.79 | — | 1344 | 176 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QJH | 4563 | 2024-03-10 | 2019-01-24 | 3.3 | 3.70 | 2.77 | 3.6 | 0.012 | 1.21 | 3.0 | 0.10 | 14.39 | 0.01 | 2.673 | 1.49 | 1.96 | 7.0 | 93.0 | 0.0 | -3.22 | 0.36 | 0.83 | 2.97 | 3.6 | 0.003 | 0.62 | 0.0 | 0.05 | 15.47 | 0.00 | 2.267 | 2.99 | 3.27 | 3.5 | 96.5 | 0.0 | -2.60 | 1.52 | 0.31 | 0.78 | 2.54 | 1302 | 177 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V49 | 31704 | 2024-03-10 | 2021-08-12 | 3.4 | 3.45 | — | 4.1 | 0.007 | 1.01 | 0.0 | 0.06 | 13.70 | 0.00 | 2.279 | 22.06 | 0.00 | 39.7 | 60.3 | 0.0 | -7.67 | 0.33 | 0.73 | 5.03 | 4.1 | 0.003 | 0.75 | 0.0 | 0.05 | 14.90 | 0.00 | 2.443 | 8.42 | 4.88 | 14.9 | 85.1 | 0.0 | -5.73 | 1.14 | 0.31 | 0.69 | 5.16 | 1221 | 180 | 3 | 0 | 0 | 0 | 0 | logfile |