Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6VW2	21410	2022-12-11	2020-02-18	3.4	3.62	—	3.8	0.006	1.13	0.0	0.06	14.20	0.01	2.292	24.13	0.00	27.3	72.7	0.0	-4.46	0.42	0.71	2.71	3.9	0.005	0.96	0.0	0.05	14.94	0.00	2.171	15.12	0.95	19.5	80.5	0.0	-4.88	0.44	0.40	0.72	1.55	1800	240	10	0	0	0	0	logfile
✔	7V4A	31705	2022-12-11	2021-08-12	3.2	3.19	—	3.3	0.002	0.52	0.0	0.05	14.28	0.00	2.423	8.54	0.00	7.9	92.1	0.0	-5.80	0.42	0.82	3.23	3.2	0.003	0.62	0.0	0.05	15.94	0.00	2.323	6.77	0.00	11.4	88.6	0.0	-4.21	1.70	0.42	0.81	3.25	1653	240	3	0	0	0	0	logfile
✔	7V22	31634	2022-12-11	2021-08-07	3.38	3.61	—	3.6	0.003	0.66	0.0	0.04	14.10	0.00	2.236	8.81	0.46	12.1	87.5	0.4	-2.81	0.53	0.77	4.24	3.6	0.004	0.70	0.0	0.04	15.65	0.00	2.182	11.91	0.00	12.1	87.5	0.4	-2.40	0.56	0.53	0.80	3.45	1958	240	1	0	0	0	0	logfile
✔	7RSQ	24677	2022-12-11	2021-08-11	3.8	4.03	3.73	4.1	0.008	0.80	0.0	0.05	12.74	0.00	2.360	4.01	2.88	3.0	97.0	0.0	-0.64	0.63	0.68	1.39	4.2	0.002	0.51	0.0	0.03	15.35	0.00	2.389	2.76	0.00	2.6	97.4	0.0	2.59	1.83	0.63	0.70	1.77	3970	246	1	0	0	0	1958	logfile
✔	7JZU	22574	2022-12-11	2020-09-02	3.1	3.26	3.10	3.3	0.015	1.33	0.0	0.08	9.63	0.01	2.509	0.78	0.00	3.3	96.7	0.0	0.23	0.69	0.76	4.15	3.3	0.003	0.59	0.0	0.04	14.23	0.00	2.252	5.19	0.00	3.3	96.7	0.0	0.46	1.61	0.69	0.80	4.31	1987	248	3	0	3	0	0	logfile
✔	7QKF	14040	2022-12-11	2021-12-17	2.83	2.46	2.72	2.8	0.012	2.23	2.0	0.21	13.42	0.01	2.598	0.53	0.00	8.4	91.6	0.0	-2.72	0.40	0.79	6.57	2.8	0.004	1.06	0.0	0.25	17.62	0.00	2.431	6.09	2.31	3.4	96.6	0.0	-3.47	1.38	0.40	0.86	6.04	3783	249	6	0	0	0	1926	logfile
✔	7M64	23688	2022-12-11	2021-03-25	4.0	4.02	—	4.3	0.008	1.15	0.0	0.07	10.07	0.00	2.451	19.77	0.00	8.7	91.3	0.0	-3.84	0.52	0.75	—	4.3	0.003	0.90	0.0	0.04	11.30	0.00	2.242	6.78	0.00	5.2	94.8	0.0	-4.00	1.14	0.51	0.74	—	1850	250	10	0	10	0	0	logfile
✔	7SRQ	25401	2022-12-11	2021-11-08	2.7	2.17	—	1.9	0.008	0.79	0.0	0.05	13.50	0.01	2.296	8.67	1.50	2.8	97.2	0.0	0.29	0.70	0.72	4.55	1.9	0.003	0.67	0.0	0.04	15.52	0.00	2.308	8.16	3.50	2.8	97.2	0.0	0.87	1.00	0.72	0.77	3.50	1960	254	1	0	2	0	0	logfile
✔	6ZS5	11388	2022-12-11	2020-07-15	3.5	4.02	3.66	3.8	0.008	1.01	1.0	0.06	15.42	0.01	2.202	4.52	0.00	4.7	95.3	0.0	-2.98	0.67	0.80	2.81	3.9	0.003	0.71	0.0	0.04	16.58	0.00	2.239	9.05	0.93	3.2	96.8	0.0	-1.66	2.34	0.67	0.79	2.65	2036	257	4	0	7	0	0	logfile
✔	7JZM	22533	2022-12-11	2020-09-02	3.5	3.74	3.50	3.7	0.015	1.37	0.0	0.08	9.25	0.01	2.420	1.01	0.00	2.0	98.0	0.0	0.75	0.75	0.78	4.01	3.7	0.003	0.69	0.0	0.04	14.47	0.00	2.187	8.88	0.00	2.8	97.2	0.0	0.24	1.24	0.76	0.79	3.02	2033	258	3	0	3	0	0	logfile
✔	7DWV	30887	2022-12-11	2021-01-18	3.07	2.95	—	3.6	0.007	0.80	0.0	0.06	14.69	0.00	2.258	17.63	0.00	26.8	73.2	0.0	-7.45	0.41	0.75	4.09	4.1	0.004	0.73	0.0	0.05	17.17	0.00	2.189	19.08	0.00	23.2	76.8	0.0	-5.96	1.50	0.40	0.75	2.79	2064	258	6	0	0	0	0	logfile
✔	7WX4	32876	2022-12-11	2022-02-14	3.4	3.64	2.77	3.7	0.006	0.59	0.0	0.04	16.46	0.00	2.219	8.20	6.39	7.2	92.8	0.0	-3.40	0.43	0.82	0.72	3.7	0.003	0.55	0.0	0.04	17.53	0.00	2.137	5.71	0.00	4.8	95.2	0.0	-0.17	0.47	0.40	0.80	0.60	1992	260	2	0	0	0	0	logfile
✔	7Y13	33555	2022-12-11	2022-06-06	3.1	3.20	3.10	3.2	0.005	0.68	0.0	0.04	13.19	0.01	2.195	8.46	0.00	6.1	93.9	0.0	1.88	0.59	0.80	3.01	3.2	0.004	0.58	0.0	0.04	15.64	0.01	2.188	8.24	0.86	5.3	94.7	0.0	2.59	0.26	0.54	0.80	2.60	2199	264	1	0	7	2	0	logfile
✔	7Y14	33556	2022-12-11	2022-06-06	3.2	3.29	3.09	3.3	0.004	0.66	1.0	0.04	13.60	0.01	2.312	8.75	0.00	4.2	95.8	0.0	2.46	0.51	0.76	2.28	3.3	0.003	0.56	1.0	0.04	15.41	0.00	2.281	8.75	0.00	5.0	95.0	0.0	2.69	1.20	0.50	0.78	1.95	2145	265	1	0	4	0	0	logfile
✔	6F1Z	4172	2022-12-11	2017-11-23	3.4	4.16	—	3.4	0.004	0.97	0.0	0.06	11.17	0.01	2.264	12.14	0.81	8.6	91.4	0.0	-4.21	0.64	0.68	-1.41	3.4	0.004	1.01	0.0	0.05	16.44	0.01	2.105	24.74	0.81	7.8	92.2	0.0	-1.37	1.33	0.66	0.75	-0.09	2138	265	4	0	0	0	0	logfile
✔	7XiZ	33213	2022-12-11	2022-04-14	3.74	3.27	3.81	3.1	0.013	1.10	0.0	0.06	18.15	0.01	2.386	4.94	0.00	12.8	86.4	0.8	-3.37	0.35	0.71	1.78	3.1	0.004	0.82	0.0	0.05	18.16	0.01	2.215	14.34	0.43	16.6	82.6	0.8	-3.64	1.53	0.37	0.73	1.52	2161	267	1	0	2	0	0	logfile
✔	7VV0	32133	2022-12-11	2021-11-04	3.5	3.69	—	3.7	0.010	1.49	1.0	0.09	14.09	0.01	2.007	11.04	2.93	4.5	95.5	0.0	-3.44	0.65	0.80	1.76	3.7	0.003	0.61	0.0	0.04	15.15	0.00	2.257	7.66	0.84	4.2	95.8	0.0	2.03	1.25	0.64	0.80	1.65	2175	268	2	0	1	0	0	logfile
✔	7B6E	12053	2022-12-11	2020-12-07	4.5	2.79	—	5.1	0.005	1.03	0.0	0.05	15.04	0.01	2.129	36.28	0.00	10.9	89.1	0.0	-3.88	0.62	0.66	—	4.9	0.003	0.98	0.0	0.05	14.71	0.00	2.119	24.18	0.00	10.9	89.1	0.0	-1.33	0.86	0.61	0.66	—	2205	269	1	0	0	0	0	logfile
✔	7VV4	32137	2022-12-11	2021-11-04	2.97	3.66	—	3.7	0.007	1.20	2.0	0.09	14.57	0.01	1.600	16.21	3.75	4.2	95.8	0.0	-0.53	0.64	0.78	2.05	3.7	0.003	0.71	0.0	0.04	16.91	0.00	2.171	10.81	1.67	1.9	97.7	0.4	2.21	0.61	0.59	0.76	1.02	2181	269	3	0	1	0	0	logfile
✔	7BX7	30235	2022-12-11	2020-04-17	2.8	2.94	—	2.9	0.009	0.84	0.0	0.04	12.96	0.00	2.228	15.34	0.00	9.3	90.7	0.0	-5.83	0.40	0.79	6.36	2.9	0.004	0.60	0.0	0.04	13.78	0.00	2.166	11.86	1.72	8.5	91.5	0.0	-5.45	1.13	0.40	0.79	6.15	1896	270	6	0	0	0	0	logfile

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