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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8EQJ | 28538 | 2023-04-19 | 2022-10-07 | 3.0 | 3.22 | 2.93 | 3.2 | 0.005 | 0.94 | 0.0 | 0.04 | 20.60 | 0.01 | 2.219 | 9.35 | 0.00 | 2.7 | 97.3 | 0.0 | -0.19 | 0.47 | 0.74 | 2.78 | 3.2 | 0.003 | 0.53 | 0.0 | 0.04 | 16.18 | 0.00 | 2.220 | 8.26 | 2.01 | 1.3 | 98.7 | 0.0 | 1.31 | 1.16 | 0.60 | 0.87 | 3.13 | 3232 | 384 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7N5F | 24188 | 2023-04-19 | 2021-06-05 | 2.7 | 2.27 | 2.74 | 2.0 | 0.023 | 1.50 | 0.0 | 0.10 | 9.99 | 0.01 | 2.468 | 0.16 | 0.00 | 1.3 | 98.7 | 0.0 | 1.68 | 0.36 | 0.75 | 3.32 | 1.7 | 0.003 | 0.57 | 0.0 | 0.04 | 17.55 | 0.00 | 2.307 | 7.74 | 1.59 | 1.6 | 98.4 | 0.0 | 2.51 | 0.79 | 0.36 | 0.78 | 3.13 | 3037 | 386 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 6XDC | 22136 | 2023-04-19 | 2020-06-10 | 2.9 | 3.80 | — | 3.7 | 0.006 | 0.79 | 0.0 | 0.06 | 13.65 | 0.01 | 2.279 | 4.95 | 1.15 | 4.0 | 96.0 | 0.0 | -2.72 | 0.47 | 0.71 | 3.58 | 3.7 | 0.003 | 0.60 | 0.0 | 0.04 | 15.30 | 0.00 | 2.197 | 9.57 | 2.59 | 3.7 | 96.3 | 0.0 | 0.98 | 1.70 | 0.45 | 0.69 | 3.50 | 3150 | 386 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UiM | 26549 | 2023-04-23 | 2022-03-29 | 3.1 | 4.12 | 3.81 | 3.6 | 0.005 | 0.87 | 0.0 | 0.04 | 18.46 | 0.01 | 1.903 | 9.02 | 0.00 | 3.7 | 96.3 | 0.0 | -1.28 | 0.67 | 0.47 | 0.98 | 3.6 | 0.006 | 0.82 | 0.0 | 0.04 | 19.55 | 0.01 | 0.997 | 36.04 | 1.47 | 6.3 | 93.4 | 0.3 | -0.97 | 2.81 | 0.79 | 0.76 | 0.73 | 14772 | 387 | 3 | 541 | 15 | 0 | 0 | logfile |
✔ | 7UiN | 26550 | 2023-04-23 | 2022-03-29 | 2.8 | 2.99 | 2.83 | 3.0 | 0.010 | 1.21 | 1.0 | 0.05 | 19.72 | 0.01 | 1.477 | 4.43 | 2.93 | 3.7 | 95.8 | 0.5 | -1.14 | 0.71 | 0.80 | 2.44 | 3.0 | 0.005 | 0.68 | 0.0 | 0.04 | 19.50 | 0.01 | 1.748 | 11.10 | 3.81 | 3.4 | 96.1 | 0.5 | 0.38 | 0.92 | 0.72 | 0.85 | 2.57 | 15585 | 387 | 5 | 578 | 30 | 24 | 0 | logfile |
✔ | 7LCJ | 23275 | 2023-04-19 | 2021-01-11 | 2.82 | 3.02 | 2.78 | 3.1 | 0.011 | 1.19 | 3.0 | 0.08 | 13.36 | 0.01 | 2.216 | 8.89 | 1.16 | 3.9 | 96.1 | 0.0 | 0.54 | 0.46 | 0.80 | 2.75 | 3.1 | 0.002 | 0.50 | 0.0 | 0.03 | 15.46 | 0.00 | 2.255 | 4.21 | 1.45 | 2.1 | 97.9 | 0.0 | 1.41 | 1.70 | 0.48 | 0.82 | 2.84 | 3264 | 390 | 1 | 0 | 1 | 17 | 0 | logfile |
✔ | 7LCK | 23276 | 2023-04-19 | 2021-01-11 | 3.24 | 3.84 | 3.15 | 3.6 | 0.008 | 1.05 | 4.0 | 0.07 | 14.23 | 0.01 | 2.160 | 7.79 | 1.16 | 6.7 | 93.3 | 0.0 | -0.93 | 0.69 | 0.79 | 2.21 | 3.7 | 0.003 | 0.61 | 0.0 | 0.04 | 15.19 | 0.00 | 2.231 | 4.68 | 0.00 | 3.9 | 96.1 | 0.0 | 0.73 | 0.57 | 0.65 | 0.79 | 2.04 | 3258 | 390 | 1 | 0 | 1 | 11 | 0 | logfile |
✔ | 7R7N | 24299 | 2023-04-19 | 2021-06-25 | 3.95 | 4.08 | 3.93 | 4.1 | 0.010 | 1.24 | 0.0 | 0.07 | 9.48 | 0.00 | 2.553 | 0.78 | 0.45 | 3.2 | 96.8 | 0.0 | 0.00 | 0.81 | 0.77 | 3.23 | 4.0 | 0.004 | 0.75 | 0.0 | 0.05 | 14.46 | 0.00 | 2.255 | 8.72 | 0.45 | 5.6 | 94.4 | 0.0 | -1.27 | 1.32 | 0.83 | 0.80 | 2.47 | 2790 | 391 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 6JC3 | 9793 | 2023-04-20 | 2019-01-28 | 4.8 | 4.87 | — | 4.8 | 0.010 | 1.35 | 2.0 | 0.07 | 15.57 | 0.01 | 1.512 | 30.30 | 3.10 | 10.1 | 89.1 | 0.8 | -4.39 | 0.42 | 0.78 | — | 4.7 | 0.004 | 0.77 | 0.0 | 0.04 | 13.92 | 0.00 | 2.100 | 14.75 | 0.00 | 6.5 | 93.5 | 0.0 | 0.86 | 4.22 | 0.43 | 0.81 | — | 3154 | 391 | 2 | 6 | 0 | 0 | 0 | logfile |
✔ | 7YHQ | 33836 | 2023-04-20 | 2022-07-14 | 3.9 | 3.34 | 3.84 | 3.3 | 0.005 | 0.91 | 0.0 | 0.06 | 23.63 | 0.01 | 2.249 | 15.40 | 2.00 | 8.6 | 91.4 | 0.0 | -0.58 | 0.74 | 0.72 | 0.99 | 3.2 | 0.003 | 0.69 | 0.0 | 0.04 | 23.59 | 0.00 | 2.143 | 16.30 | 0.86 | 9.1 | 90.9 | 0.0 | -0.74 | 0.65 | 0.74 | 0.74 | 0.99 | 4065 | 393 | 4 | 42 | 2 | 0 | 0 | logfile |
✔ | 7XHT | 33198 | 2023-04-20 | 2022-04-10 | 2.55 | 2.77 | 2.54 | 2.8 | 0.003 | 0.68 | 0.0 | 0.03 | 14.64 | 0.00 | 2.014 | 6.29 | 0.00 | 1.8 | 98.2 | 0.0 | 0.35 | 0.69 | 0.85 | 5.47 | 2.8 | 0.002 | 0.52 | 0.0 | 0.03 | 15.90 | 0.00 | 1.997 | 6.66 | 1.75 | 2.0 | 98.0 | 0.0 | 0.73 | 0.35 | 0.65 | 0.85 | 4.80 | 7839 | 395 | 6 | 220 | 3 | 0 | 0 | logfile |
✔ | 6oG3 | 20051 | 2023-04-19 | 2019-04-01 | 4.1 | 5.37 | — | 6.5 | 0.005 | 1.53 | 0.0 | 0.00 | 0.93 | 0.00 | 2.539 | 0.00 | 0.00 | 0.0 | 99.2 | 0.8 | 0.27 | 0.46 | 0.48 | — | 6.0 | 0.005 | 1.11 | 0.0 | 0.00 | 8.01 | 0.00 | 2.615 | 51.00 | 0.00 | 13.0 | 87.0 | 0.0 | -1.64 | 2.16 | 0.67 | 0.87 | — | 1215 | 396 | 4 | 0 | 9 | 0 | 0 | logfile |
✔ | 7UTN | 26782 | 2023-04-20 | 2022-04-27 | 2.74 | 3.33 | 2.90 | 3.1 | 0.007 | 0.68 | 0.0 | 0.04 | 18.57 | 0.00 | 2.080 | 8.58 | 0.00 | 1.8 | 98.2 | 0.0 | 0.01 | 0.86 | 0.88 | 4.65 | 3.1 | 0.003 | 0.56 | 0.0 | 0.03 | 18.52 | 0.00 | 2.158 | 8.00 | 0.58 | 1.8 | 98.2 | 0.0 | 0.95 | 0.28 | 0.82 | 0.85 | 3.82 | 8003 | 397 | 4 | 228 | 0 | 0 | 0 | logfile |
✔ | 7TX7 | 26156 | 2023-04-19 | 2022-02-07 | 3.8 | 4.02 | 3.76 | 3.9 | 0.008 | 0.76 | 0.0 | 0.07 | 12.94 | 0.00 | 2.072 | 6.28 | 0.00 | 1.8 | 98.2 | 0.0 | 3.77 | 0.44 | 0.74 | 1.59 | 3.9 | 0.003 | 0.77 | 0.0 | 0.04 | 16.58 | 0.00 | 2.219 | 9.34 | 0.33 | 2.5 | 97.5 | 0.0 | 2.15 | 1.32 | 0.46 | 0.75 | 1.83 | 3203 | 397 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 8DEP | 27394 | 2023-04-19 | 2022-06-21 | 3.6 | 4.01 | 3.65 | 3.8 | 0.008 | 0.76 | 0.0 | 0.07 | 13.59 | 0.01 | 2.197 | 5.44 | 0.65 | 0.5 | 99.5 | 0.0 | 3.03 | 0.47 | 0.78 | 1.93 | 3.9 | 0.003 | 0.62 | 0.0 | 0.03 | 16.80 | 0.00 | 2.214 | 7.84 | 0.32 | 1.5 | 98.5 | 0.0 | 2.16 | 0.65 | 0.46 | 0.77 | 1.68 | 3223 | 398 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 6X0U | 21984 | 2023-04-19 | 2020-05-17 | 3.6 | 3.62 | — | 3.6 | 0.004 | 0.62 | 0.0 | 0.04 | 14.50 | 0.00 | 2.277 | 5.74 | 0.00 | 3.7 | 96.1 | 0.3 | -5.79 | 0.26 | 0.78 | 1.89 | 3.6 | 0.002 | 0.69 | 0.0 | 0.04 | 17.79 | 0.00 | 2.197 | 7.98 | 0.29 | 3.2 | 96.8 | 0.0 | 1.27 | 0.82 | 0.27 | 0.79 | 2.52 | 3091 | 398 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WYJ | 21966 | 2023-04-19 | 2020-05-13 | 3.7 | 3.74 | — | 3.8 | 0.010 | 0.64 | 0.0 | 0.05 | 12.33 | 0.00 | 2.268 | 5.08 | 0.00 | 5.3 | 94.7 | 0.0 | -4.80 | 0.59 | 0.78 | 4.37 | 3.8 | 0.003 | 0.59 | 0.0 | 0.04 | 14.52 | 0.00 | 2.333 | 5.74 | 0.00 | 1.8 | 98.2 | 0.0 | 2.16 | 0.60 | 0.63 | 0.80 | 1.47 | 2949 | 398 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TX6 | 26155 | 2023-04-19 | 2022-02-07 | 3.3 | 3.60 | 3.29 | 3.5 | 0.008 | 0.90 | 1.0 | 0.05 | 12.44 | 0.01 | 2.327 | 6.69 | 0.62 | 3.0 | 97.0 | 0.0 | 2.51 | 0.53 | 0.76 | 2.79 | 3.6 | 0.003 | 0.71 | 1.0 | 0.05 | 15.51 | 0.01 | 2.189 | 6.37 | 0.00 | 3.3 | 96.7 | 0.0 | 1.64 | 1.61 | 0.53 | 0.77 | 2.32 | 3169 | 398 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7XQ1 | 33388 | 2023-04-20 | 2022-05-06 | 3.4 | 3.32 | 3.36 | 3.5 | 0.012 | 1.53 | 1.0 | 0.06 | 13.52 | 0.01 | 2.320 | 6.82 | 0.58 | 2.8 | 97.2 | 0.0 | -6.81 | 0.47 | 0.78 | 3.56 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 15.87 | 0.00 | 2.120 | 8.80 | 0.00 | 2.3 | 97.7 | 0.0 | 0.66 | 1.19 | 0.50 | 0.81 | 1.80 | 3302 | 400 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 8CTL | 26994 | 2023-04-20 | 2022-05-16 | 3.1 | 3.52 | 3.12 | 3.3 | 0.009 | 1.32 | 4.0 | 0.09 | 24.25 | 0.01 | 2.280 | 32.18 | 7.20 | 12.1 | 87.4 | 0.5 | -5.68 | 0.62 | 0.46 | 0.80 | 3.3 | 0.003 | 0.69 | 0.0 | 0.04 | 20.91 | 0.00 | 1.966 | 12.51 | 0.29 | 3.5 | 96.5 | 0.0 | -0.81 | 2.44 | 0.81 | 0.81 | 2.45 | 8138 | 401 | 4 | 233 | 0 | 0 | 0 | logfile |