Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EQJ	28538	2023-04-19	2022-10-07	3.0	3.22	2.93	3.2	0.005	0.94	0.0	0.04	20.60	0.01	2.219	9.35	0.00	2.7	97.3	0.0	-0.19	0.47	0.74	2.78	3.2	0.003	0.53	0.0	0.04	16.18	0.00	2.220	8.26	2.01	1.3	98.7	0.0	1.31	1.16	0.60	0.87	3.13	3232	384	4	0	4	0	0	logfile
✔	7N5F	24188	2023-04-19	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.57	0.0	0.04	17.55	0.00	2.307	7.74	1.59	1.6	98.4	0.0	2.51	0.79	0.36	0.78	3.13	3037	386	1	0	1	0	0	logfile
✔	6XDC	22136	2023-04-19	2020-06-10	2.9	3.80	—	3.7	0.006	0.79	0.0	0.06	13.65	0.01	2.279	4.95	1.15	4.0	96.0	0.0	-2.72	0.47	0.71	3.58	3.7	0.003	0.60	0.0	0.04	15.30	0.00	2.197	9.57	2.59	3.7	96.3	0.0	0.98	1.70	0.45	0.69	3.50	3150	386	2	0	0	0	0	logfile
✔	7UiM	26549	2023-04-23	2022-03-29	3.1	4.12	3.81	3.6	0.005	0.87	0.0	0.04	18.46	0.01	1.903	9.02	0.00	3.7	96.3	0.0	-1.28	0.67	0.47	0.98	3.6	0.006	0.82	0.0	0.04	19.55	0.01	0.997	36.04	1.47	6.3	93.4	0.3	-0.97	2.81	0.79	0.76	0.73	14772	387	3	541	15	0	0	logfile
✔	7UiN	26550	2023-04-23	2022-03-29	2.8	2.99	2.83	3.0	0.010	1.21	1.0	0.05	19.72	0.01	1.477	4.43	2.93	3.7	95.8	0.5	-1.14	0.71	0.80	2.44	3.0	0.005	0.68	0.0	0.04	19.50	0.01	1.748	11.10	3.81	3.4	96.1	0.5	0.38	0.92	0.72	0.85	2.57	15585	387	5	578	30	24	0	logfile
✔	7LCJ	23275	2023-04-19	2021-01-11	2.82	3.02	2.78	3.1	0.011	1.19	3.0	0.08	13.36	0.01	2.216	8.89	1.16	3.9	96.1	0.0	0.54	0.46	0.80	2.75	3.1	0.002	0.50	0.0	0.03	15.46	0.00	2.255	4.21	1.45	2.1	97.9	0.0	1.41	1.70	0.48	0.82	2.84	3264	390	1	0	1	17	0	logfile
✔	7LCK	23276	2023-04-19	2021-01-11	3.24	3.84	3.15	3.6	0.008	1.05	4.0	0.07	14.23	0.01	2.160	7.79	1.16	6.7	93.3	0.0	-0.93	0.69	0.79	2.21	3.7	0.003	0.61	0.0	0.04	15.19	0.00	2.231	4.68	0.00	3.9	96.1	0.0	0.73	0.57	0.65	0.79	2.04	3258	390	1	0	1	11	0	logfile
✔	7R7N	24299	2023-04-19	2021-06-25	3.95	4.08	3.93	4.1	0.010	1.24	0.0	0.07	9.48	0.00	2.553	0.78	0.45	3.2	96.8	0.0	0.00	0.81	0.77	3.23	4.0	0.004	0.75	0.0	0.05	14.46	0.00	2.255	8.72	0.45	5.6	94.4	0.0	-1.27	1.32	0.83	0.80	2.47	2790	391	4	0	3	0	0	logfile
✔	6JC3	9793	2023-04-20	2019-01-28	4.8	4.87	—	4.8	0.010	1.35	2.0	0.07	15.57	0.01	1.512	30.30	3.10	10.1	89.1	0.8	-4.39	0.42	0.78	—	4.7	0.004	0.77	0.0	0.04	13.92	0.00	2.100	14.75	0.00	6.5	93.5	0.0	0.86	4.22	0.43	0.81	—	3154	391	2	6	0	0	0	logfile
✔	7YHQ	33836	2023-04-20	2022-07-14	3.9	3.34	3.84	3.3	0.005	0.91	0.0	0.06	23.63	0.01	2.249	15.40	2.00	8.6	91.4	0.0	-0.58	0.74	0.72	0.99	3.2	0.003	0.69	0.0	0.04	23.59	0.00	2.143	16.30	0.86	9.1	90.9	0.0	-0.74	0.65	0.74	0.74	0.99	4065	393	4	42	2	0	0	logfile
✔	7XHT	33198	2023-04-20	2022-04-10	2.55	2.77	2.54	2.8	0.003	0.68	0.0	0.03	14.64	0.00	2.014	6.29	0.00	1.8	98.2	0.0	0.35	0.69	0.85	5.47	2.8	0.002	0.52	0.0	0.03	15.90	0.00	1.997	6.66	1.75	2.0	98.0	0.0	0.73	0.35	0.65	0.85	4.80	7839	395	6	220	3	0	0	logfile
✔	6oG3	20051	2023-04-19	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.005	1.11	0.0	0.00	8.01	0.00	2.615	51.00	0.00	13.0	87.0	0.0	-1.64	2.16	0.67	0.87	—	1215	396	4	0	9	0	0	logfile
✔	7UTN	26782	2023-04-20	2022-04-27	2.74	3.33	2.90	3.1	0.007	0.68	0.0	0.04	18.57	0.00	2.080	8.58	0.00	1.8	98.2	0.0	0.01	0.86	0.88	4.65	3.1	0.003	0.56	0.0	0.03	18.52	0.00	2.158	8.00	0.58	1.8	98.2	0.0	0.95	0.28	0.82	0.85	3.82	8003	397	4	228	0	0	0	logfile
✔	7TX7	26156	2023-04-19	2022-02-07	3.8	4.02	3.76	3.9	0.008	0.76	0.0	0.07	12.94	0.00	2.072	6.28	0.00	1.8	98.2	0.0	3.77	0.44	0.74	1.59	3.9	0.003	0.77	0.0	0.04	16.58	0.00	2.219	9.34	0.33	2.5	97.5	0.0	2.15	1.32	0.46	0.75	1.83	3203	397	1	0	4	0	0	logfile
✔	8DEP	27394	2023-04-19	2022-06-21	3.6	4.01	3.65	3.8	0.008	0.76	0.0	0.07	13.59	0.01	2.197	5.44	0.65	0.5	99.5	0.0	3.03	0.47	0.78	1.93	3.9	0.003	0.62	0.0	0.03	16.80	0.00	2.214	7.84	0.32	1.5	98.5	0.0	2.16	0.65	0.46	0.77	1.68	3223	398	1	0	4	0	0	logfile
✔	6X0U	21984	2023-04-19	2020-05-17	3.6	3.62	—	3.6	0.004	0.62	0.0	0.04	14.50	0.00	2.277	5.74	0.00	3.7	96.1	0.3	-5.79	0.26	0.78	1.89	3.6	0.002	0.69	0.0	0.04	17.79	0.00	2.197	7.98	0.29	3.2	96.8	0.0	1.27	0.82	0.27	0.79	2.52	3091	398	4	0	0	0	0	logfile
✔	6WYJ	21966	2023-04-19	2020-05-13	3.7	3.74	—	3.8	0.010	0.64	0.0	0.05	12.33	0.00	2.268	5.08	0.00	5.3	94.7	0.0	-4.80	0.59	0.78	4.37	3.8	0.003	0.59	0.0	0.04	14.52	0.00	2.333	5.74	0.00	1.8	98.2	0.0	2.16	0.60	0.63	0.80	1.47	2949	398	1	0	0	0	0	logfile
✔	7TX6	26155	2023-04-19	2022-02-07	3.3	3.60	3.29	3.5	0.008	0.90	1.0	0.05	12.44	0.01	2.327	6.69	0.62	3.0	97.0	0.0	2.51	0.53	0.76	2.79	3.6	0.003	0.71	1.0	0.05	15.51	0.01	2.189	6.37	0.00	3.3	96.7	0.0	1.64	1.61	0.53	0.77	2.32	3169	398	1	0	2	0	0	logfile
✔	7XQ1	33388	2023-04-20	2022-05-06	3.4	3.32	3.36	3.5	0.012	1.53	1.0	0.06	13.52	0.01	2.320	6.82	0.58	2.8	97.2	0.0	-6.81	0.47	0.78	3.56	3.5	0.003	0.62	0.0	0.04	15.87	0.00	2.120	8.80	0.00	2.3	97.7	0.0	0.66	1.19	0.50	0.81	1.80	3302	400	1	0	2	0	0	logfile
✔	8CTL	26994	2023-04-20	2022-05-16	3.1	3.52	3.12	3.3	0.009	1.32	4.0	0.09	24.25	0.01	2.280	32.18	7.20	12.1	87.4	0.5	-5.68	0.62	0.46	0.80	3.3	0.003	0.69	0.0	0.04	20.91	0.00	1.966	12.51	0.29	3.5	96.5	0.0	-0.81	2.44	0.81	0.81	2.45	8138	401	4	233	0	0	0	logfile

• ← previous
• Page 7 of 372
• next →