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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7EY4 | 31377 | 2023-04-20 | 2021-05-29 | 3.69 | 3.90 | — | 3.9 | 0.007 | 0.90 | 0.0 | 0.05 | 13.63 | 0.01 | 2.150 | 10.63 | 0.20 | 13.5 | 86.1 | 0.4 | -2.54 | 0.63 | 0.78 | 3.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4683 | 585 | 5 | 0 | 3 | 0 | 0 | logfile |
✔ | 7X1W | 32951 | 2023-04-21 | 2022-02-24 | 3.3 | 3.45 | — | 3.4 | 0.007 | 0.76 | 0.0 | 0.04 | 14.72 | 0.00 | 2.163 | 7.80 | 0.00 | 6.5 | 93.5 | 0.0 | -0.77 | 0.64 | 0.83 | 2.49 | 3.4 | 0.002 | 0.55 | 0.0 | 0.04 | 16.01 | 0.00 | 2.277 | 7.64 | 0.10 | 5.2 | 94.8 | 0.0 | 0.37 | 1.90 | 0.63 | 0.84 | 1.87 | 9315 | 1159 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 8CT3 | 26979 | 2023-04-21 | 2022-05-13 | 3.3 | 2.97 | 3.21 | 3.1 | 0.002 | 0.48 | 0.0 | 0.04 | 10.68 | 0.01 | 2.215 | 4.29 | 0.63 | 0.9 | 99.1 | 0.0 | 1.87 | 0.51 | 0.72 | 2.16 | 3.0 | 0.004 | 0.62 | 0.0 | 0.04 | 14.29 | 0.00 | 2.152 | 8.04 | 0.63 | 2.0 | 98.0 | 0.0 | 1.40 | 0.85 | 0.52 | 0.78 | 2.35 | 8964 | 1114 | 6 | 0 | 8 | 0 | 0 | logfile |
✔ | 6SCN | 10143 | 2023-04-21 | 2019-07-24 | 3.1 | 3.62 | 3.00 | 3.2 | 0.007 | 0.84 | 0.0 | 0.05 | 10.50 | 0.01 | 2.037 | 14.15 | 0.82 | 4.9 | 94.3 | 0.8 | -2.90 | 0.79 | 0.83 | 3.66 | 3.2 | 0.004 | 0.66 | 0.0 | 0.04 | 12.93 | 0.00 | 2.117 | 11.75 | 0.21 | 4.2 | 95.7 | 0.0 | 0.62 | 1.03 | 0.80 | 0.87 | 2.96 | 60582 | 7875 | 33 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V01 | 26925 | 2023-04-24 | 2022-05-09 | 3.67 | 4.67 | 3.75 | 3.9 | 0.006 | 0.88 | 0.0 | 0.05 | 14.35 | 0.00 | 1.822 | 14.41 | 0.47 | 5.8 | 94.2 | 0.0 | -1.18 | 0.83 | 0.70 | 1.57 | 3.9 | 0.006 | 0.80 | 0.0 | 0.04 | 16.51 | 0.00 | 2.086 | 22.04 | 0.42 | 6.0 | 94.0 | 0.0 | -0.79 | 3.19 | 0.90 | 0.82 | 1.19 | 18492 | 2128 | 11 | 55 | 2 | 0 | 0 | logfile |
✔ | 8CVN | 27010 | 2023-04-20 | 2022-05-18 | 2.4 | 3.23 | 2.42 | 3.1 | 0.014 | 1.53 | 3.0 | 0.08 | 17.97 | 0.00 | 2.524 | 1.49 | 1.21 | 2.4 | 97.6 | 0.0 | 0.60 | 0.84 | 0.87 | 3.98 | 3.1 | 0.002 | 0.82 | 0.0 | 0.04 | 18.09 | 0.00 | 2.305 | 2.98 | 2.17 | 1.6 | 98.4 | 0.0 | 1.58 | 0.81 | 0.76 | 0.87 | 3.33 | 4054 | 512 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7U6R | 26378 | 2023-04-27 | 2022-03-05 | 2.5 | 2.72 | 2.58 | 2.8 | 0.015 | 1.60 | 47.0 | 0.10 | 12.04 | 0.02 | 2.390 | 2.62 | 1.61 | 1.6 | 98.2 | 0.2 | 0.53 | 0.74 | 0.82 | 5.45 | 2.7 | 0.004 | 0.64 | 0.0 | 0.04 | 14.68 | 0.00 | 2.195 | 4.98 | 1.28 | 1.9 | 98.1 | 0.0 | 0.49 | 0.51 | 0.71 | 0.85 | 4.70 | 25561 | 3291 | 12 | 0 | 51 | 0 | 0 | logfile |
✔ | 7LGQ | 23328 | 2023-04-28 | 2021-01-20 | 2.7 | 2.96 | 2.84 | 3.0 | 0.022 | 1.91 | 24.0 | 0.11 | 12.30 | 0.01 | 1.806 | 1.29 | 0.28 | 4.7 | 95.3 | 0.0 | -0.63 | 0.64 | 0.81 | 3.74 | 3.0 | 0.003 | 0.59 | 0.0 | 0.04 | 15.19 | 0.00 | 2.009 | 18.31 | 1.30 | 4.8 | 95.2 | 0.0 | -0.56 | 1.38 | 0.67 | 0.86 | 2.92 | 27340 | 3508 | 16 | 0 | 16 | 0 | 24 | logfile |
✔ | 6SGW | 10186 | 2023-04-26 | 2019-08-05 | 3.8 | 4.00 | — | 3.9 | 0.006 | 1.04 | 0.0 | 0.06 | 14.45 | 0.01 | 2.259 | 6.90 | 0.26 | 9.5 | 90.3 | 0.2 | -4.52 | 0.63 | 0.79 | 1.47 | 3.9 | 0.003 | 0.73 | 0.0 | 0.04 | 15.88 | 0.00 | 2.188 | 11.96 | 0.48 | 9.4 | 90.5 | 0.1 | -0.44 | 0.60 | 0.63 | 0.78 | 0.90 | 22448 | 3020 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7E80 | 31006 | 2023-04-22 | 2021-02-28 | 3.67 | 4.02 | — | 3.9 | 0.003 | 0.50 | 4.0 | 0.04 | 10.46 | 0.00 | 2.066 | 8.31 | 1.97 | 4.4 | 95.6 | 0.0 | 0.97 | 0.74 | 0.84 | 1.76 | 3.9 | 0.002 | 0.63 | 0.0 | 0.04 | 13.63 | 0.00 | 2.096 | 10.56 | 0.23 | 3.9 | 96.1 | 0.0 | 0.89 | 0.46 | 0.73 | 0.84 | 1.58 | 114468 | 15296 | 77 | 0 | 75 | 0 | 0 | logfile |
✔ | 7QVi | 14178 | 2023-04-21 | 2022-01-21 | 3.0 | 3.27 | — | 3.3 | 0.005 | 0.73 | 0.0 | 0.04 | 14.80 | 0.00 | 1.960 | 9.67 | 0.00 | 3.3 | 96.7 | 0.0 | -1.28 | 0.72 | 0.88 | 4.43 | 3.3 | 0.006 | 0.63 | 0.0 | 0.04 | 16.38 | 0.00 | 1.851 | 10.01 | 1.17 | 3.9 | 96.1 | 0.0 | 0.23 | 0.36 | 0.73 | 0.90 | 3.80 | 56600 | 7128 | 32 | 0 | 32 | 0 | 0 | logfile |
✔ | 7TFJ | 25874 | 2023-04-25 | 2022-01-06 | 3.3 | 3.54 | — | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 14.87 | 0.00 | 2.088 | 7.61 | 0.09 | 2.8 | 97.2 | 0.0 | 0.19 | 0.76 | 0.81 | 2.14 | 3.5 | 0.003 | 0.57 | 0.0 | 0.04 | 16.67 | 0.00 | 2.004 | 10.43 | 0.45 | 3.4 | 96.6 | 0.0 | 0.75 | 0.93 | 0.76 | 0.83 | 1.77 | 20607 | 2486 | 15 | 42 | 9 | 0 | 0 | logfile |
✔ | 5MPS | 3539 | 2023-04-21 | 2016-12-18 | 3.85 | 4.03 | — | 3.9 | 0.008 | 1.41 | 13.0 | 0.11 | 15.52 | 0.01 | 1.479 | 7.73 | 2.50 | 8.5 | 90.6 | 0.9 | -2.11 | 0.73 | 0.82 | 1.54 | 3.9 | 0.003 | 0.74 | 0.0 | 0.04 | 16.68 | 0.00 | 1.889 | 16.91 | 0.35 | 5.4 | 94.5 | 0.0 | 0.17 | 0.79 | 0.73 | 0.80 | 1.17 | 58929 | 6718 | 36 | 339 | 99 | 0 | 0 | logfile |
✔ | 7PY4 | 13711 | 2023-04-22 | 2021-10-08 | 3.1 | 3.52 | 3.18 | 3.5 | 0.004 | 0.59 | 0.0 | 0.05 | 12.30 | 0.00 | 1.650 | 4.90 | 0.08 | 3.1 | 96.9 | 0.0 | 0.83 | 0.65 | 0.82 | 3.46 | 3.5 | 0.003 | 0.53 | 0.0 | 0.04 | 14.56 | 0.00 | 2.028 | 5.45 | 0.00 | 3.2 | 96.8 | 0.0 | 0.96 | 0.74 | 0.67 | 0.85 | 2.34 | 11835 | 1439 | 5 | 0 | 11 | 0 | 0 | logfile |
✘ | 6UMM | 20820 | 2023-04-26 | 2019-10-09 | 3.7 | 6.74 | 4.15 | 4.0 | 0.006 | 0.79 | 0.0 | 0.04 | 13.23 | 0.00 | 2.203 | 11.97 | 0.17 | 4.8 | 95.2 | 0.0 | -2.07 | 0.55 | 0.56 | -0.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23658 | 3184 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SGZ | 25121 | 2023-04-25 | 2021-10-07 | 3.17 | 3.52 | — | 3.5 | 0.002 | 0.53 | 0.0 | 0.04 | 15.13 | 0.00 | 2.128 | 7.19 | 0.04 | 5.5 | 94.5 | 0.0 | 0.10 | 0.68 | 0.74 | 1.35 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 17.16 | 0.00 | 1.917 | 12.34 | 0.30 | 6.0 | 93.9 | 0.0 | -0.10 | 0.56 | 0.68 | 0.80 | 2.11 | 21055 | 2558 | 15 | 23 | 10 | 0 | 0 | logfile |
✔ | 7UTZ | 26795 | 2023-04-26 | 2022-04-28 | 2.4 | 2.07 | — | 2.4 | 0.004 | 0.69 | 0.0 | 0.04 | 12.27 | 0.01 | 2.137 | 3.96 | 0.08 | 3.0 | 97.0 | 0.0 | -0.05 | 0.66 | 0.68 | 3.51 | 1.6 | 0.004 | 0.62 | 0.0 | 0.04 | 15.20 | 0.00 | 1.878 | 9.89 | 2.26 | 4.4 | 95.6 | 0.0 | -0.39 | 0.77 | 0.72 | 0.77 | 3.66 | 23679 | 1536 | 10 | 0 | 8 | 0 | 11632 | logfile |
✔ | 7BJ2 | 12193 | 2023-04-21 | 2021-01-13 | 3.0 | 3.64 | 3.01 | 3.2 | 0.003 | 0.62 | 0.0 | 0.04 | 14.87 | 0.00 | 2.246 | 12.91 | 0.00 | 4.0 | 96.0 | 0.0 | 0.20 | 0.72 | 0.80 | 2.36 | 3.2 | 0.007 | 0.70 | 0.0 | 0.04 | 16.76 | 0.00 | 2.230 | 13.68 | 1.03 | 5.9 | 94.1 | 0.0 | -0.07 | 0.53 | 0.74 | 0.91 | 2.91 | 58552 | 7956 | 26 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TDD | 25825 | 2023-04-25 | 2021-12-30 | 3.5 | 2.37 | 2.70 | 2.8 | 0.029 | 2.07 | 183.0 | 0.29 | 12.65 | 0.01 | 2.192 | 1.90 | 0.55 | 1.5 | 98.4 | 0.1 | -0.52 | 0.67 | 0.64 | 2.40 | 2.1 | 0.006 | 0.63 | 0.0 | 0.04 | 15.61 | 0.00 | 1.945 | 7.73 | 0.74 | 2.9 | 97.1 | 0.1 | 1.89 | 3.04 | 0.67 | 0.69 | 2.69 | 20031 | 1211 | 2 | 0 | 0 | 0 | 10025 | logfile |
✔ | 7QRM | 14123 | 2023-04-24 | 2022-01-11 | 2.7 | 2.81 | — | 2.9 | 0.009 | 0.91 | 0.0 | 0.05 | 17.11 | 0.01 | 2.033 | 14.02 | 1.88 | 4.6 | 95.4 | 0.0 | -0.52 | 0.71 | 0.88 | 3.72 | 2.9 | 0.003 | 0.63 | 0.0 | 0.04 | 17.17 | 0.00 | 2.156 | 4.07 | 1.44 | 3.3 | 96.7 | 0.0 | 1.11 | 0.93 | 0.69 | 0.88 | 3.05 | 16336 | 1902 | 27 | 0 | 37 | 0 | 0 | logfile |