Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7EY4	31377	2023-04-20	2021-05-29	3.69	3.90	—	3.9	0.007	0.90	0.0	0.05	13.63	0.01	2.150	10.63	0.20	13.5	86.1	0.4	-2.54	0.63	0.78	3.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4683	585	5	0	3	0	0	logfile
✔	7X1W	32951	2023-04-21	2022-02-24	3.3	3.45	—	3.4	0.007	0.76	0.0	0.04	14.72	0.00	2.163	7.80	0.00	6.5	93.5	0.0	-0.77	0.64	0.83	2.49	3.4	0.002	0.55	0.0	0.04	16.01	0.00	2.277	7.64	0.10	5.2	94.8	0.0	0.37	1.90	0.63	0.84	1.87	9315	1159	4	0	2	0	0	logfile
✔	8CT3	26979	2023-04-21	2022-05-13	3.3	2.97	3.21	3.1	0.002	0.48	0.0	0.04	10.68	0.01	2.215	4.29	0.63	0.9	99.1	0.0	1.87	0.51	0.72	2.16	3.0	0.004	0.62	0.0	0.04	14.29	0.00	2.152	8.04	0.63	2.0	98.0	0.0	1.40	0.85	0.52	0.78	2.35	8964	1114	6	0	8	0	0	logfile
✔	6SCN	10143	2023-04-21	2019-07-24	3.1	3.62	3.00	3.2	0.007	0.84	0.0	0.05	10.50	0.01	2.037	14.15	0.82	4.9	94.3	0.8	-2.90	0.79	0.83	3.66	3.2	0.004	0.66	0.0	0.04	12.93	0.00	2.117	11.75	0.21	4.2	95.7	0.0	0.62	1.03	0.80	0.87	2.96	60582	7875	33	0	0	0	0	logfile
✔	7V01	26925	2023-04-24	2022-05-09	3.67	4.67	3.75	3.9	0.006	0.88	0.0	0.05	14.35	0.00	1.822	14.41	0.47	5.8	94.2	0.0	-1.18	0.83	0.70	1.57	3.9	0.006	0.80	0.0	0.04	16.51	0.00	2.086	22.04	0.42	6.0	94.0	0.0	-0.79	3.19	0.90	0.82	1.19	18492	2128	11	55	2	0	0	logfile
✔	8CVN	27010	2023-04-20	2022-05-18	2.4	3.23	2.42	3.1	0.014	1.53	3.0	0.08	17.97	0.00	2.524	1.49	1.21	2.4	97.6	0.0	0.60	0.84	0.87	3.98	3.1	0.002	0.82	0.0	0.04	18.09	0.00	2.305	2.98	2.17	1.6	98.4	0.0	1.58	0.81	0.76	0.87	3.33	4054	512	4	0	4	0	0	logfile
✔	7U6R	26378	2023-04-27	2022-03-05	2.5	2.72	2.58	2.8	0.015	1.60	47.0	0.10	12.04	0.02	2.390	2.62	1.61	1.6	98.2	0.2	0.53	0.74	0.82	5.45	2.7	0.004	0.64	0.0	0.04	14.68	0.00	2.195	4.98	1.28	1.9	98.1	0.0	0.49	0.51	0.71	0.85	4.70	25561	3291	12	0	51	0	0	logfile
✔	7LGQ	23328	2023-04-28	2021-01-20	2.7	2.96	2.84	3.0	0.022	1.91	24.0	0.11	12.30	0.01	1.806	1.29	0.28	4.7	95.3	0.0	-0.63	0.64	0.81	3.74	3.0	0.003	0.59	0.0	0.04	15.19	0.00	2.009	18.31	1.30	4.8	95.2	0.0	-0.56	1.38	0.67	0.86	2.92	27340	3508	16	0	16	0	24	logfile
✔	6SGW	10186	2023-04-26	2019-08-05	3.8	4.00	—	3.9	0.006	1.04	0.0	0.06	14.45	0.01	2.259	6.90	0.26	9.5	90.3	0.2	-4.52	0.63	0.79	1.47	3.9	0.003	0.73	0.0	0.04	15.88	0.00	2.188	11.96	0.48	9.4	90.5	0.1	-0.44	0.60	0.63	0.78	0.90	22448	3020	10	0	0	0	0	logfile
✔	7E80	31006	2023-04-22	2021-02-28	3.67	4.02	—	3.9	0.003	0.50	4.0	0.04	10.46	0.00	2.066	8.31	1.97	4.4	95.6	0.0	0.97	0.74	0.84	1.76	3.9	0.002	0.63	0.0	0.04	13.63	0.00	2.096	10.56	0.23	3.9	96.1	0.0	0.89	0.46	0.73	0.84	1.58	114468	15296	77	0	75	0	0	logfile
✔	7QVi	14178	2023-04-21	2022-01-21	3.0	3.27	—	3.3	0.005	0.73	0.0	0.04	14.80	0.00	1.960	9.67	0.00	3.3	96.7	0.0	-1.28	0.72	0.88	4.43	3.3	0.006	0.63	0.0	0.04	16.38	0.00	1.851	10.01	1.17	3.9	96.1	0.0	0.23	0.36	0.73	0.90	3.80	56600	7128	32	0	32	0	0	logfile
✔	7TFJ	25874	2023-04-25	2022-01-06	3.3	3.54	—	3.5	0.003	0.62	0.0	0.04	14.87	0.00	2.088	7.61	0.09	2.8	97.2	0.0	0.19	0.76	0.81	2.14	3.5	0.003	0.57	0.0	0.04	16.67	0.00	2.004	10.43	0.45	3.4	96.6	0.0	0.75	0.93	0.76	0.83	1.77	20607	2486	15	42	9	0	0	logfile
✔	5MPS	3539	2023-04-21	2016-12-18	3.85	4.03	—	3.9	0.008	1.41	13.0	0.11	15.52	0.01	1.479	7.73	2.50	8.5	90.6	0.9	-2.11	0.73	0.82	1.54	3.9	0.003	0.74	0.0	0.04	16.68	0.00	1.889	16.91	0.35	5.4	94.5	0.0	0.17	0.79	0.73	0.80	1.17	58929	6718	36	339	99	0	0	logfile
✔	7PY4	13711	2023-04-22	2021-10-08	3.1	3.52	3.18	3.5	0.004	0.59	0.0	0.05	12.30	0.00	1.650	4.90	0.08	3.1	96.9	0.0	0.83	0.65	0.82	3.46	3.5	0.003	0.53	0.0	0.04	14.56	0.00	2.028	5.45	0.00	3.2	96.8	0.0	0.96	0.74	0.67	0.85	2.34	11835	1439	5	0	11	0	0	logfile
✘	6UMM	20820	2023-04-26	2019-10-09	3.7	6.74	4.15	4.0	0.006	0.79	0.0	0.04	13.23	0.00	2.203	11.97	0.17	4.8	95.2	0.0	-2.07	0.55	0.56	-0.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23658	3184	10	0	0	0	0	logfile
✔	7SGZ	25121	2023-04-25	2021-10-07	3.17	3.52	—	3.5	0.002	0.53	0.0	0.04	15.13	0.00	2.128	7.19	0.04	5.5	94.5	0.0	0.10	0.68	0.74	1.35	3.5	0.003	0.58	0.0	0.04	17.16	0.00	1.917	12.34	0.30	6.0	93.9	0.0	-0.10	0.56	0.68	0.80	2.11	21055	2558	15	23	10	0	0	logfile
✔	7UTZ	26795	2023-04-26	2022-04-28	2.4	2.07	—	2.4	0.004	0.69	0.0	0.04	12.27	0.01	2.137	3.96	0.08	3.0	97.0	0.0	-0.05	0.66	0.68	3.51	1.6	0.004	0.62	0.0	0.04	15.20	0.00	1.878	9.89	2.26	4.4	95.6	0.0	-0.39	0.77	0.72	0.77	3.66	23679	1536	10	0	8	0	11632	logfile
✔	7BJ2	12193	2023-04-21	2021-01-13	3.0	3.64	3.01	3.2	0.003	0.62	0.0	0.04	14.87	0.00	2.246	12.91	0.00	4.0	96.0	0.0	0.20	0.72	0.80	2.36	3.2	0.007	0.70	0.0	0.04	16.76	0.00	2.230	13.68	1.03	5.9	94.1	0.0	-0.07	0.53	0.74	0.91	2.91	58552	7956	26	0	0	0	0	logfile
✔	7TDD	25825	2023-04-25	2021-12-30	3.5	2.37	2.70	2.8	0.029	2.07	183.0	0.29	12.65	0.01	2.192	1.90	0.55	1.5	98.4	0.1	-0.52	0.67	0.64	2.40	2.1	0.006	0.63	0.0	0.04	15.61	0.00	1.945	7.73	0.74	2.9	97.1	0.1	1.89	3.04	0.67	0.69	2.69	20031	1211	2	0	0	0	10025	logfile
✔	7QRM	14123	2023-04-24	2022-01-11	2.7	2.81	—	2.9	0.009	0.91	0.0	0.05	17.11	0.01	2.033	14.02	1.88	4.6	95.4	0.0	-0.52	0.71	0.88	3.72	2.9	0.003	0.63	0.0	0.04	17.17	0.00	2.156	4.07	1.44	3.3	96.7	0.0	1.11	0.93	0.69	0.88	3.05	16336	1902	27	0	37	0	0	logfile

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