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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8oZF | 17307 | 2023-11-21 | 2023-05-09 | 3.73 | 4.14 | 3.95 | 3.8 | 0.006 | 0.75 | 0.0 | 0.04 | 15.80 | 0.01 | 2.112 | 13.75 | 0.00 | 4.9 | 94.8 | 0.4 | -0.84 | 0.72 | 0.71 | 0.70 | 3.9 | 0.003 | 0.72 | 0.0 | 0.04 | 17.63 | 0.00 | 2.082 | 18.80 | 0.19 | 6.3 | 93.4 | 0.3 | -1.22 | 0.70 | 0.73 | 0.74 | 0.69 | 32076 | 3564 | 18 | 136 | 2 | 0 | 0 | logfile |
✘ | 7ASD | 11892 | 2023-11-20 | 2020-10-27 | 3.5 | 3.68 | 3.48 | 3.5 | 0.003 | 0.68 | 0.0 | 0.06 | 8.97 | 0.00 | 2.153 | 5.28 | 2.16 | 2.2 | 97.8 | 0.0 | 0.30 | 0.81 | 0.83 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30296 | 3664 | 48 | 0 | 72 | 0 | 0 | logfile |
✔ | 8iPS | 35642 | 2023-11-14 | 2023-03-14 | 3.6 | 3.89 | 3.62 | 3.8 | 0.005 | 0.70 | 0.0 | 0.04 | 18.31 | 0.01 | 2.221 | 8.07 | 0.21 | 7.6 | 92.4 | 0.0 | 0.29 | 0.75 | 0.82 | 1.33 | 3.8 | 0.003 | 0.61 | 0.0 | 0.04 | 18.75 | 0.00 | 2.201 | 6.05 | 0.32 | 6.8 | 93.1 | 0.1 | 0.80 | 1.42 | 0.73 | 0.82 | 1.10 | 9071 | 1161 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 8i5X | 35197 | 2023-11-15 | 2023-01-26 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13590 | 1565 | 8 | 0 | 35 | 0 | 0 | logfile |
✔ | 7U0J | 26261 | 2023-11-16 | 2022-02-18 | 2.7 | 3.24 | — | 3.1 | 0.008 | 0.93 | 3.0 | 0.05 | 27.09 | 0.01 | 2.088 | 6.00 | 0.39 | 4.6 | 95.3 | 0.1 | -0.97 | 0.80 | 0.82 | 3.63 | 3.1 | 0.004 | 0.60 | 0.0 | 0.04 | 27.69 | 0.00 | 2.195 | 7.99 | 2.25 | 4.6 | 95.4 | 0.0 | 1.39 | 0.36 | 0.76 | 0.79 | 3.64 | 15622 | 1210 | 12 | 298 | 0 | 0 | 0 | logfile |
✔ | 8oR4 | 17117 | 2023-11-16 | 2023-04-13 | 3.8 | 2.76 | 3.68 | 2.2 | 0.003 | 0.59 | 1.0 | 0.04 | 16.20 | 0.00 | 1.930 | 10.19 | 0.31 | 6.0 | 94.0 | 0.0 | 0.05 | 0.70 | 0.66 | 0.53 | 2.2 | 0.003 | 0.77 | 0.0 | 0.04 | 17.22 | 0.00 | 2.145 | 10.05 | 0.56 | 5.8 | 94.2 | 0.0 | -0.28 | 0.54 | 0.71 | 0.67 | 0.47 | 15036 | 1988 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ESV | 28580 | 2023-11-14 | 2022-10-14 | 3.3 | 2.37 | 3.29 | 2.0 | 0.006 | 0.71 | 0.0 | 0.04 | 17.57 | 0.01 | 1.929 | 12.92 | 0.00 | 6.7 | 93.1 | 0.2 | -0.67 | 0.76 | 0.76 | 2.53 | 2.0 | 0.005 | 0.71 | 0.0 | 0.05 | 17.76 | 0.00 | 1.937 | 15.12 | 0.13 | 8.0 | 91.8 | 0.2 | -0.60 | 0.29 | 0.77 | 0.77 | 2.67 | 7222 | 933 | 8 | 0 | 13 | 0 | 0 | logfile |
✔ | 7V4D | 31708 | 2023-11-13 | 2021-08-12 | 3.5 | 3.38 | — | 4.0 | 0.003 | 0.54 | 0.0 | 0.05 | 11.89 | 0.00 | 2.234 | 14.44 | 0.00 | 7.1 | 92.9 | 0.0 | -5.68 | 0.41 | 0.80 | 4.67 | 4.1 | 0.003 | 0.67 | 0.0 | 0.05 | 13.01 | 0.00 | 2.208 | 8.66 | 0.00 | 9.2 | 90.8 | 0.0 | -3.61 | 1.19 | 0.42 | 0.80 | 4.19 | 2376 | 348 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DMX | 27548 | 2023-11-15 | 2022-07-08 | 3.37 | 3.66 | 3.43 | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 13.99 | 0.00 | 2.105 | 6.01 | 0.00 | 2.3 | 97.7 | 0.0 | 0.17 | 0.55 | 0.79 | 2.06 | 3.6 | 0.002 | 0.54 | 0.0 | 0.04 | 15.82 | 0.00 | 2.014 | 3.56 | 0.16 | 2.2 | 97.8 | 0.0 | -0.45 | 0.50 | 0.69 | 0.91 | 2.30 | 11748 | 1488 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7PKQ | 13477 | 2023-11-17 | 2021-08-26 | 4.2 | 4.26 | 4.62 | 4.1 | 0.009 | 1.42 | 20.0 | 0.08 | 17.46 | 0.01 | 2.123 | 9.00 | 0.89 | 6.0 | 93.8 | 0.3 | -2.71 | 0.63 | 0.61 | — | 4.1 | 0.004 | 0.74 | 0.0 | 0.04 | 16.94 | 0.01 | 1.966 | 19.69 | 0.00 | 7.4 | 92.5 | 0.1 | -1.27 | 0.93 | 0.65 | 0.66 | — | 70313 | 4968 | 44 | 1114 | 1722 | 0 | 0 | logfile |
✔ | 7YDP | 33755 | 2023-11-14 | 2022-07-04 | 3.1 | 2.36 | 3.18 | 2.1 | 0.005 | 0.73 | 0.0 | 0.05 | 12.57 | 0.00 | 2.123 | 11.85 | 0.00 | 5.2 | 94.8 | 0.0 | -1.21 | 0.68 | 0.65 | 1.63 | 2.1 | 0.003 | 0.65 | 0.0 | 0.04 | 14.59 | 0.00 | 2.168 | 10.22 | 0.23 | 4.9 | 95.1 | 0.0 | 0.01 | 0.40 | 0.69 | 0.66 | 1.23 | 8028 | 1022 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 7YSW | 34084 | 2023-11-15 | 2022-08-13 | 3.03 | 3.51 | 3.06 | 3.4 | 0.007 | 1.01 | 0.0 | 0.20 | 16.78 | 0.00 | 1.948 | 10.59 | 4.77 | 6.4 | 93.6 | 0.0 | -1.74 | 0.76 | 0.80 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12407 | 1517 | 7 | 0 | 12 | 0 | 0 | logfile |
✔ | 8FS4 | 29413 | 2023-11-18 | 2023-01-09 | 2.94 | 3.30 | 3.09 | 3.3 | 0.004 | 0.65 | 0.0 | 0.05 | 18.37 | 0.00 | 1.835 | 9.66 | 2.69 | 3.6 | 96.4 | 0.0 | -0.22 | 0.66 | 0.78 | 1.97 | 3.3 | 0.003 | 0.60 | 0.0 | 0.04 | 18.84 | 0.00 | 1.954 | 10.53 | 3.65 | 3.1 | 96.8 | 0.0 | 0.68 | 0.49 | 0.63 | 0.78 | 2.00 | 21291 | 2539 | 16 | 42 | 9 | 0 | 0 | logfile |
✔ | 7RoE | 24593 | 2023-11-19 | 2021-07-30 | 3.7 | 3.80 | — | 3.5 | 0.006 | 0.69 | 0.0 | 0.04 | 12.63 | 0.01 | 2.266 | 11.99 | 4.00 | 6.7 | 93.3 | 0.0 | 1.70 | 0.67 | 0.86 | 1.96 | 3.5 | 0.004 | 0.73 | 0.0 | 0.04 | 14.52 | 0.01 | 2.191 | 10.10 | 0.58 | 5.7 | 94.2 | 0.1 | 3.40 | 0.52 | 0.67 | 0.85 | 1.77 | 137200 | 18800 | 200 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YMH | 33928 | 2023-11-13 | 2022-07-28 | 3.52 | 3.74 | 3.42 | 3.7 | 0.004 | 0.78 | 0.0 | 0.05 | 13.78 | 0.01 | 2.324 | 3.55 | 0.00 | 4.8 | 95.2 | 0.0 | -4.54 | 0.66 | 0.79 | 2.80 | 3.7 | 0.003 | 0.63 | 0.0 | 0.04 | 14.97 | 0.00 | 2.255 | 7.63 | 0.54 | 3.2 | 96.8 | 0.0 | -0.41 | 0.52 | 0.66 | 0.79 | 1.67 | 3948 | 542 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 8FKR | 29254 | 2023-11-15 | 2022-12-21 | 2.89 | 3.25 | 3.05 | 3.1 | 0.003 | 0.55 | 0.0 | 0.04 | 13.61 | 0.00 | 1.940 | 2.04 | 0.01 | 1.2 | 98.8 | 0.0 | 1.71 | 0.75 | 0.81 | 3.01 | 3.1 | 0.005 | 0.60 | 0.0 | 0.04 | 14.77 | 0.00 | 1.908 | 6.40 | 1.52 | 2.4 | 97.6 | 0.0 | 1.35 | 0.46 | 0.77 | 0.86 | 2.87 | 116287 | 9101 | 63 | 1991 | 58 | 0 | 0 | logfile |
✔ | 8SoR | 40669 | 2023-11-21 | 2023-04-29 | 3.96 | 3.57 | — | 3.5 | 0.004 | 0.61 | 1.0 | 0.04 | 14.39 | 0.00 | 1.903 | 7.61 | 0.11 | 4.7 | 95.2 | 0.1 | -0.05 | 0.75 | 0.73 | 2.16 | 3.5 | 0.003 | 0.55 | 0.0 | 0.04 | 15.00 | 0.00 | 1.882 | 8.07 | 0.11 | 5.7 | 94.3 | 0.1 | 0.47 | 0.31 | 0.75 | 0.73 | 2.07 | 32094 | 1986 | 4 | 0 | 1 | 0 | 16046 | logfile |
✔ | 8SiY | 40522 | 2023-11-16 | 2023-04-17 | 2.9 | 3.59 | 2.98 | 3.2 | 0.006 | 0.64 | 0.0 | 0.05 | 26.34 | 0.01 | 1.993 | 5.69 | 1.38 | 2.8 | 97.2 | 0.0 | 1.37 | 0.87 | 0.83 | 3.33 | 3.2 | 0.004 | 0.62 | 0.0 | 0.04 | 27.38 | 0.00 | 2.151 | 8.74 | 2.13 | 2.9 | 97.0 | 0.1 | 1.49 | 0.64 | 0.88 | 0.89 | 2.66 | 14844 | 1118 | 12 | 294 | 0 | 0 | 0 | logfile |
✔ | 8J19 | 35914 | 2023-11-14 | 2023-04-12 | 3.23 | 3.65 | 3.37 | 3.6 | 0.005 | 0.63 | 1.0 | 0.04 | 15.96 | 0.00 | 2.220 | 5.65 | 0.74 | 1.9 | 98.1 | 0.0 | 0.90 | 0.65 | 0.84 | 3.13 | 3.6 | 0.002 | 0.58 | 0.0 | 0.04 | 16.14 | 0.00 | 2.188 | 7.25 | 0.11 | 2.1 | 97.9 | 0.0 | 0.76 | 0.94 | 0.60 | 0.83 | 2.93 | 8801 | 1129 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7YE6 | 33765 | 2023-11-16 | 2022-07-05 | 3.4 | 3.40 | 3.44 | 3.3 | 0.003 | 0.68 | 0.0 | 0.05 | 13.34 | 0.00 | 2.254 | 5.29 | 0.28 | 8.2 | 91.8 | 0.0 | -4.95 | 0.61 | 0.58 | 1.56 | 3.3 | 0.003 | 0.72 | 0.0 | 0.04 | 15.50 | 0.00 | 2.123 | 12.77 | 0.69 | 8.7 | 91.3 | 0.0 | -2.94 | 1.64 | 0.66 | 0.69 | 1.35 | 13804 | 1781 | 6 | 0 | 0 | 0 | 0 | logfile |