Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oZF	17307	2023-11-21	2023-05-09	3.73	4.14	3.95	3.8	0.006	0.75	0.0	0.04	15.80	0.01	2.112	13.75	0.00	4.9	94.8	0.4	-0.84	0.72	0.71	0.70	3.9	0.003	0.72	0.0	0.04	17.63	0.00	2.082	18.80	0.19	6.3	93.4	0.3	-1.22	0.70	0.73	0.74	0.69	32076	3564	18	136	2	0	0	logfile
✘	7ASD	11892	2023-11-20	2020-10-27	3.5	3.68	3.48	3.5	0.003	0.68	0.0	0.06	8.97	0.00	2.153	5.28	2.16	2.2	97.8	0.0	0.30	0.81	0.83	2.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30296	3664	48	0	72	0	0	logfile
✔	8iPS	35642	2023-11-14	2023-03-14	3.6	3.89	3.62	3.8	0.005	0.70	0.0	0.04	18.31	0.01	2.221	8.07	0.21	7.6	92.4	0.0	0.29	0.75	0.82	1.33	3.8	0.003	0.61	0.0	0.04	18.75	0.00	2.201	6.05	0.32	6.8	93.1	0.1	0.80	1.42	0.73	0.82	1.10	9071	1161	3	0	1	0	0	logfile
✘	8i5X	35197	2023-11-15	2023-01-26	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13590	1565	8	0	35	0	0	logfile
✔	7U0J	26261	2023-11-16	2022-02-18	2.7	3.24	—	3.1	0.008	0.93	3.0	0.05	27.09	0.01	2.088	6.00	0.39	4.6	95.3	0.1	-0.97	0.80	0.82	3.63	3.1	0.004	0.60	0.0	0.04	27.69	0.00	2.195	7.99	2.25	4.6	95.4	0.0	1.39	0.36	0.76	0.79	3.64	15622	1210	12	298	0	0	0	logfile
✔	8oR4	17117	2023-11-16	2023-04-13	3.8	2.76	3.68	2.2	0.003	0.59	1.0	0.04	16.20	0.00	1.930	10.19	0.31	6.0	94.0	0.0	0.05	0.70	0.66	0.53	2.2	0.003	0.77	0.0	0.04	17.22	0.00	2.145	10.05	0.56	5.8	94.2	0.0	-0.28	0.54	0.71	0.67	0.47	15036	1988	7	0	0	0	0	logfile
✔	8ESV	28580	2023-11-14	2022-10-14	3.3	2.37	3.29	2.0	0.006	0.71	0.0	0.04	17.57	0.01	1.929	12.92	0.00	6.7	93.1	0.2	-0.67	0.76	0.76	2.53	2.0	0.005	0.71	0.0	0.05	17.76	0.00	1.937	15.12	0.13	8.0	91.8	0.2	-0.60	0.29	0.77	0.77	2.67	7222	933	8	0	13	0	0	logfile
✔	7V4D	31708	2023-11-13	2021-08-12	3.5	3.38	—	4.0	0.003	0.54	0.0	0.05	11.89	0.00	2.234	14.44	0.00	7.1	92.9	0.0	-5.68	0.41	0.80	4.67	4.1	0.003	0.67	0.0	0.05	13.01	0.00	2.208	8.66	0.00	9.2	90.8	0.0	-3.61	1.19	0.42	0.80	4.19	2376	348	6	0	0	0	0	logfile
✔	8DMX	27548	2023-11-15	2022-07-08	3.37	3.66	3.43	3.6	0.003	0.59	0.0	0.04	13.99	0.00	2.105	6.01	0.00	2.3	97.7	0.0	0.17	0.55	0.79	2.06	3.6	0.002	0.54	0.0	0.04	15.82	0.00	2.014	3.56	0.16	2.2	97.8	0.0	-0.45	0.50	0.69	0.91	2.30	11748	1488	8	0	8	0	0	logfile
✔	7PKQ	13477	2023-11-17	2021-08-26	4.2	4.26	4.62	4.1	0.009	1.42	20.0	0.08	17.46	0.01	2.123	9.00	0.89	6.0	93.8	0.3	-2.71	0.63	0.61	—	4.1	0.004	0.74	0.0	0.04	16.94	0.01	1.966	19.69	0.00	7.4	92.5	0.1	-1.27	0.93	0.65	0.66	—	70313	4968	44	1114	1722	0	0	logfile
✔	7YDP	33755	2023-11-14	2022-07-04	3.1	2.36	3.18	2.1	0.005	0.73	0.0	0.05	12.57	0.00	2.123	11.85	0.00	5.2	94.8	0.0	-1.21	0.68	0.65	1.63	2.1	0.003	0.65	0.0	0.04	14.59	0.00	2.168	10.22	0.23	4.9	95.1	0.0	0.01	0.40	0.69	0.66	1.23	8028	1022	5	0	0	0	0	logfile
✘	7YSW	34084	2023-11-15	2022-08-13	3.03	3.51	3.06	3.4	0.007	1.01	0.0	0.20	16.78	0.00	1.948	10.59	4.77	6.4	93.6	0.0	-1.74	0.76	0.80	3.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12407	1517	7	0	12	0	0	logfile
✔	8FS4	29413	2023-11-18	2023-01-09	2.94	3.30	3.09	3.3	0.004	0.65	0.0	0.05	18.37	0.00	1.835	9.66	2.69	3.6	96.4	0.0	-0.22	0.66	0.78	1.97	3.3	0.003	0.60	0.0	0.04	18.84	0.00	1.954	10.53	3.65	3.1	96.8	0.0	0.68	0.49	0.63	0.78	2.00	21291	2539	16	42	9	0	0	logfile
✔	7RoE	24593	2023-11-19	2021-07-30	3.7	3.80	—	3.5	0.006	0.69	0.0	0.04	12.63	0.01	2.266	11.99	4.00	6.7	93.3	0.0	1.70	0.67	0.86	1.96	3.5	0.004	0.73	0.0	0.04	14.52	0.01	2.191	10.10	0.58	5.7	94.2	0.1	3.40	0.52	0.67	0.85	1.77	137200	18800	200	0	0	0	0	logfile
✔	7YMH	33928	2023-11-13	2022-07-28	3.52	3.74	3.42	3.7	0.004	0.78	0.0	0.05	13.78	0.01	2.324	3.55	0.00	4.8	95.2	0.0	-4.54	0.66	0.79	2.80	3.7	0.003	0.63	0.0	0.04	14.97	0.00	2.255	7.63	0.54	3.2	96.8	0.0	-0.41	0.52	0.66	0.79	1.67	3948	542	4	0	1	0	0	logfile
✔	8FKR	29254	2023-11-15	2022-12-21	2.89	3.25	3.05	3.1	0.003	0.55	0.0	0.04	13.61	0.00	1.940	2.04	0.01	1.2	98.8	0.0	1.71	0.75	0.81	3.01	3.1	0.005	0.60	0.0	0.04	14.77	0.00	1.908	6.40	1.52	2.4	97.6	0.0	1.35	0.46	0.77	0.86	2.87	116287	9101	63	1991	58	0	0	logfile
✔	8SoR	40669	2023-11-21	2023-04-29	3.96	3.57	—	3.5	0.004	0.61	1.0	0.04	14.39	0.00	1.903	7.61	0.11	4.7	95.2	0.1	-0.05	0.75	0.73	2.16	3.5	0.003	0.55	0.0	0.04	15.00	0.00	1.882	8.07	0.11	5.7	94.3	0.1	0.47	0.31	0.75	0.73	2.07	32094	1986	4	0	1	0	16046	logfile
✔	8SiY	40522	2023-11-16	2023-04-17	2.9	3.59	2.98	3.2	0.006	0.64	0.0	0.05	26.34	0.01	1.993	5.69	1.38	2.8	97.2	0.0	1.37	0.87	0.83	3.33	3.2	0.004	0.62	0.0	0.04	27.38	0.00	2.151	8.74	2.13	2.9	97.0	0.1	1.49	0.64	0.88	0.89	2.66	14844	1118	12	294	0	0	0	logfile
✔	8J19	35914	2023-11-14	2023-04-12	3.23	3.65	3.37	3.6	0.005	0.63	1.0	0.04	15.96	0.00	2.220	5.65	0.74	1.9	98.1	0.0	0.90	0.65	0.84	3.13	3.6	0.002	0.58	0.0	0.04	16.14	0.00	2.188	7.25	0.11	2.1	97.9	0.0	0.76	0.94	0.60	0.83	2.93	8801	1129	6	0	1	0	0	logfile
✔	7YE6	33765	2023-11-16	2022-07-05	3.4	3.40	3.44	3.3	0.003	0.68	0.0	0.05	13.34	0.00	2.254	5.29	0.28	8.2	91.8	0.0	-4.95	0.61	0.58	1.56	3.3	0.003	0.72	0.0	0.04	15.50	0.00	2.123	12.77	0.69	8.7	91.3	0.0	-2.94	1.64	0.66	0.69	1.35	13804	1781	6	0	0	0	0	logfile

• ← previous
• Page 2 of 528
• next →