Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PM7	13523	2023-09-30	2021-09-02	3.5	3.92	3.46	3.4	0.004	0.85	1.0	0.05	15.53	0.01	1.316	5.26	0.09	0.2	99.8	0.0	-1.31	0.90	0.84	3.49	3.4	0.003	0.67	0.0	0.04	15.64	0.00	1.969	8.68	0.28	1.7	98.3	0.0	1.80	2.25	0.90	0.84	2.87	10149	1260	6	0	5	0	0	logfile
✔	7PLY	13506	2023-09-30	2021-09-01	3.2	3.79	3.37	3.5	0.016	1.49	0.0	0.07	15.18	0.01	2.228	3.82	0.00	0.2	99.8	0.0	-1.06	0.89	0.85	2.92	3.6	0.003	0.84	0.0	0.04	15.92	0.00	2.068	6.15	0.09	1.2	98.8	0.0	1.69	0.67	0.85	0.84	2.11	10149	1258	4	0	4	0	0	logfile
✔	6GX5	0077	2023-09-27	2018-06-26	3.2	2.51	2.94	3.2	0.017	1.20	0.0	0.11	16.09	0.01	2.596	5.96	4.94	4.3	95.7	0.0	-3.50	0.85	0.88	5.60	3.2	0.004	0.76	0.0	0.05	17.31	0.00	2.207	9.16	1.65	5.8	94.2	0.0	-2.81	0.66	0.82	0.85	4.84	2133	282	3	0	0	0	0	logfile
✔	8F2A	28810	2023-09-30	2022-11-07	2.2	2.40	2.32	2.5	0.004	0.60	0.0	0.05	13.84	0.00	2.188	4.68	0.76	1.7	98.3	0.0	-2.70	0.65	0.84	4.09	2.5	0.003	0.59	0.0	0.04	16.15	0.00	2.174	6.56	1.42	1.7	98.3	0.0	0.60	0.52	0.64	0.84	3.72	10044	1276	9	0	5	0	0	logfile
✔	7PMB	13527	2023-09-30	2021-09-02	3.6	4.10	3.61	3.6	0.006	0.93	1.0	0.06	15.72	0.01	1.317	6.47	0.09	0.2	99.8	0.0	-1.25	0.90	0.83	2.52	3.7	0.003	0.71	0.0	0.04	16.45	0.00	1.955	8.91	0.00	2.1	97.9	0.0	1.39	1.32	0.90	0.85	2.19	10113	1255	6	0	5	0	0	logfile
✔	8C6J	16452	2023-09-29	2023-01-12	2.8	3.35	2.78	2.6	0.003	0.52	1.0	0.04	13.30	0.00	1.589	7.77	0.06	2.6	97.4	0.0	1.31	0.69	0.71	3.35	2.6	0.008	0.65	0.0	0.05	14.13	0.00	1.853	9.25	1.18	3.8	96.2	0.0	1.85	0.34	0.75	0.82	3.20	111233	16794	69	460	18	0	0	logfile
✔	8G7L	29815	2023-09-28	2023-02-16	2.5	2.66	2.66	2.7	0.008	1.14	0.0	0.06	13.34	0.01	2.287	1.63	0.79	0.6	99.4	0.0	1.52	0.73	0.83	2.54	2.7	0.004	0.58	0.0	0.04	14.59	0.00	2.184	5.19	0.44	1.0	99.0	0.0	1.32	0.30	0.72	0.84	2.45	55510	7378	28	0	42	0	0	logfile
✔	8H4i	34478	2023-09-28	2022-10-10	3.06	2.31	3.09	3.0	0.012	1.04	0.0	0.06	13.70	0.01	2.147	4.38	0.00	5.3	94.7	0.0	-0.34	0.77	0.83	3.22	3.0	0.004	0.65	0.0	0.04	14.95	0.00	2.104	4.25	0.00	3.9	96.1	0.0	0.37	0.31	0.78	0.85	2.18	7965	1035	5	0	1	0	0	logfile
✔	8CYV	27085	2023-09-28	2022-05-24	3.5	3.17	3.47	3.7	0.003	0.61	0.0	0.05	10.01	0.00	2.423	5.36	0.00	5.9	94.1	0.0	-4.11	0.58	0.72	2.74	3.4	0.004	0.75	0.0	0.05	16.08	0.00	2.184	9.50	2.17	7.0	92.4	0.6	-4.20	1.35	0.59	0.75	2.25	5964	864	12	0	0	0	0	logfile
✔	7PM8	13524	2023-09-30	2021-09-02	3.5	3.91	3.50	3.4	0.004	0.88	1.0	0.05	15.57	0.01	1.316	6.40	0.09	0.3	99.7	0.0	-1.60	0.90	0.83	2.90	3.4	0.003	0.67	0.0	0.04	15.94	0.00	2.001	9.62	0.28	2.2	97.8	0.0	0.90	1.30	0.91	0.85	2.61	10149	1260	6	0	5	0	0	logfile
✘	8AZS	15770	2023-09-29	2022-09-06	2.9	2.78	2.55	2.8	0.011	1.50	0.0	0.12	16.09	0.01	0.017	1346.55	0.00	3.1	96.9	0.0	-1.98	0.27	0.40	5.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9036	1224	36	0	0	0	0	logfile
✔	7PMH	13533	2023-09-30	2021-09-02	3.4	4.28	3.26	3.3	0.009	1.01	2.0	0.06	14.97	0.01	1.310	4.17	0.09	0.2	99.8	0.0	-1.51	0.91	0.83	3.35	3.3	0.002	0.63	0.0	0.04	15.46	0.00	2.076	7.04	0.00	1.2	98.8	0.0	1.79	1.28	0.94	0.88	2.75	10154	1259	6	0	6	0	0	logfile
✔	7PLW	13504	2023-09-30	2021-09-01	3.5	4.05	3.55	3.5	0.005	0.84	0.0	0.05	15.08	0.01	1.323	4.81	0.00	0.2	99.8	0.0	-1.69	0.91	0.83	3.00	3.5	0.003	0.64	0.0	0.04	15.73	0.00	1.996	8.33	0.00	1.6	98.4	0.0	1.19	1.31	0.91	0.85	2.30	10139	1263	5	0	3	0	0	logfile
✔	7PM0	13508	2023-09-30	2021-09-01	3.6	3.89	3.65	3.6	0.014	1.42	0.0	0.06	15.54	0.01	2.002	4.90	0.00	0.2	99.8	0.0	-1.27	0.90	0.85	2.96	3.6	0.003	0.87	0.0	0.04	16.18	0.00	2.014	8.81	0.09	1.1	98.9	0.0	1.50	0.71	0.89	0.85	2.06	10169	1261	3	0	4	0	0	logfile
✔	7PMG	13532	2023-09-30	2021-09-02	3.3	4.20	3.27	3.2	0.014	1.18	2.0	0.07	15.15	0.01	1.308	4.64	0.09	0.2	99.8	0.0	-1.37	0.92	0.85	3.45	3.3	0.003	0.63	0.0	0.04	15.26	0.00	1.982	6.27	0.00	1.4	98.6	0.0	1.72	1.26	0.94	0.89	2.87	10189	1264	6	0	6	0	0	logfile
✔	7PM3	13511	2023-09-29	2021-09-01	3.1	3.07	3.12	3.1	0.025	2.31	0.0	0.07	17.19	0.01	2.019	5.42	0.00	0.0	100.0	0.0	-0.98	0.85	0.82	3.08	3.1	0.003	1.25	0.0	0.04	16.77	0.00	2.048	9.49	0.11	1.9	98.1	0.0	1.15	1.72	0.87	0.86	2.30	8940	1113	6	0	12	0	0	logfile
✔	7PM2	13510	2023-09-30	2021-09-01	3.6	3.83	3.61	3.6	0.014	1.42	0.0	0.06	16.01	0.01	2.085	4.75	0.00	0.2	99.8	0.0	-1.45	0.89	0.84	2.55	3.6	0.003	0.88	0.0	0.04	16.60	0.00	1.982	8.47	0.28	1.8	98.2	0.0	1.50	1.33	0.89	0.85	2.37	10156	1259	3	0	4	0	0	logfile
✔	7PMD	13529	2023-09-30	2021-09-02	2.9	4.01	2.83	3.4	0.012	1.06	1.0	0.06	14.84	0.01	1.314	3.61	0.09	0.2	99.8	0.0	-1.33	0.94	0.88	3.40	3.4	0.002	0.64	0.0	0.04	15.39	0.00	2.040	6.62	0.65	1.7	98.3	0.0	1.81	1.26	0.93	0.87	3.00	10189	1264	6	0	6	0	0	logfile
✔	8ADE	15361	2023-09-28	2022-07-08	2.78	2.65	2.55	2.7	0.012	1.58	0.0	0.11	9.64	0.00	2.213	3.08	0.00	3.4	96.6	0.0	-4.12	0.74	0.76	3.27	3.0	0.005	0.75	0.0	0.05	15.07	0.00	2.172	13.13	1.83	2.9	97.1	0.0	-2.61	0.73	0.77	0.83	4.24	5026	644	7	0	0	0	0	logfile
✔	6H66	0145	2023-09-30	2018-07-26	4.16	4.23	3.99	4.2	0.008	0.88	0.0	0.05	9.41	0.01	2.070	15.41	0.17	10.4	89.4	0.2	-3.09	0.61	0.76	—	4.2	0.003	0.65	0.0	0.04	12.04	0.00	2.009	24.15	0.00	8.3	91.7	0.0	0.14	1.87	0.62	0.78	—	10017	667	4	30	1	0	4120	logfile

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