Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6VPS	21316	2021-12-01	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.89	6.11	2.7	0.004	0.53	0.0	0.03	20.06	0.00	2.403	3.89	0.98	6.9	93.1	0.0	-3.78	1.19	0.48	0.88	6.47	2736	279	9	0	0	0	0	logfile
✔	6SD1	10145	2021-12-02	2019-07-26	2.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39369	4983	33	0	0	0	0	logfile
✔	6VU8	21388	2021-12-01	2020-02-14	4.14	4.31	4.17	4.2	0.006	1.03	0.0	0.05	16.37	0.01	2.262	7.78	0.00	9.9	90.1	0.0	-4.91	0.72	0.78	—	4.2	0.003	0.83	0.0	0.04	15.09	0.00	2.083	16.99	0.00	8.9	91.1	0.0	-2.04	1.31	0.73	0.78	—	5249	669	2	0	0	0	0	logfile
✔	6VU5	21387	2021-12-01	2020-02-14	3.5	3.59	3.38	3.5	0.006	0.96	0.0	0.06	15.54	0.01	2.230	8.37	0.00	9.0	91.0	0.0	-4.94	0.72	0.75	1.82	3.5	0.003	0.73	0.0	0.04	17.10	0.00	2.145	15.01	0.42	5.0	95.0	0.0	-2.32	0.55	0.71	0.73	1.09	4657	576	2	0	27	0	0	logfile
✔	6VQi	21351	2021-12-01	2020-02-05	4.3	4.89	—	4.2	0.005	1.14	0.0	0.05	3.90	0.01	2.327	1.95	0.00	1.3	98.2	0.5	2.16	0.56	0.73	—	3.8	0.002	0.54	0.0	0.03	3.92	0.00	2.243	3.65	0.00	5.4	94.5	0.1	3.11	0.74	0.56	0.76	—	5278	1062	8	0	0	0	0	logfile
✔	6SCN	10143	2021-12-02	2019-07-24	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	60582	7875	33	0	0	0	0	logfile
✔	6XQo	22291	2021-12-01	2020-07-09	3.1	3.54	—	3.5	0.004	0.57	0.0	0.04	15.61	0.00	1.956	9.56	3.52	4.4	95.6	0.0	-2.83	0.76	0.75	2.70	3.5	0.004	0.63	0.0	0.04	16.63	0.00	2.191	10.65	0.70	2.6	97.4	0.0	0.73	1.25	0.79	0.78	1.70	4301	560	4	0	4	0	0	logfile
✔	6WUT	21918	2021-12-01	2020-05-05	3.0	3.08	—	3.1	0.008	0.89	0.0	0.05	13.93	0.01	2.253	3.66	5.79	6.2	93.8	0.0	-4.07	0.70	0.82	3.81	3.1	0.003	0.61	0.0	0.04	15.65	0.00	2.147	5.85	3.19	3.9	96.1	0.0	-0.04	4.28	0.71	0.83	3.21	8218	1087	3	0	0	0	0	logfile
✔	6W5C	21541	2021-12-02	2020-03-13	2.9	2.92	—	3.2	0.004	0.64	0.0	0.04	16.12	0.00	2.103	8.53	0.85	7.4	92.4	0.2	-1.44	0.84	0.82	4.35	3.2	0.003	0.58	0.0	0.04	17.98	0.00	2.053	11.09	1.94	7.0	93.0	0.0	-0.10	1.16	0.83	0.82	3.53	10183	1023	5	105	0	0	0	logfile
✔	6Y5L	10701	2021-12-01	2020-02-25	3.6	3.66	2.91	3.6	0.003	0.69	0.0	0.05	14.52	0.01	2.161	5.85	0.00	7.8	92.2	0.0	-2.14	0.67	0.72	1.57	3.6	0.005	1.08	0.0	0.05	18.69	0.01	2.172	22.47	1.15	7.4	92.6	0.0	-0.24	1.10	0.70	0.76	1.07	3855	477	9	0	3	0	0	logfile
✔	7CAH	30331	2021-12-01	2020-06-08	3.9	4.13	—	4.0	0.005	0.92	0.0	0.05	13.68	0.01	2.137	18.79	0.00	19.9	79.8	0.3	-5.76	0.68	0.64	2.37	4.0	0.003	0.76	0.0	0.05	14.99	0.01	2.233	15.81	0.74	12.6	87.4	0.0	-3.53	0.55	0.69	0.64	2.17	2889	404	3	0	0	0	0	logfile
✔	6X4S	22042	2021-12-01	2020-05-22	3.5	3.84	—	3.9	0.007	0.77	0.0	0.05	15.59	0.00	2.077	11.03	0.97	1.9	98.1	0.0	1.34	0.72	0.75	1.39	3.9	0.003	0.71	0.0	0.04	17.87	0.00	2.114	11.97	1.17	1.8	98.2	0.0	4.20	1.53	0.72	0.76	1.05	5373	706	9	0	1	0	0	logfile
✔	6SLU	10240	2021-12-02	2019-08-20	4.7	4.88	4.61	4.8	0.004	0.64	0.0	0.04	9.23	0.00	1.454	9.87	0.18	1.3	98.7	0.0	-1.03	0.69	0.77	—	4.7	0.004	0.85	0.0	0.05	13.31	0.01	2.104	21.06	0.00	3.5	96.5	0.0	-0.26	1.79	0.73	0.82	—	10336	1320	6	0	0	0	0	logfile
✔	6SKK	10226	2021-12-02	2019-08-15	3.6	3.76	3.63	3.7	0.003	0.60	0.0	0.04	12.96	0.00	2.319	7.60	0.18	1.7	98.3	0.0	-1.14	0.70	0.75	1.70	3.7	0.014	1.15	0.0	0.04	17.00	0.01	1.614	15.82	0.36	2.8	97.2	0.0	0.92	0.70	0.71	0.77	1.53	10328	1320	6	0	0	0	0	logfile
✔	6TA3	10421	2021-12-01	2019-10-29	3.8	4.18	—	3.9	0.024	2.45	4.0	0.08	18.76	0.01	0.317	210.56	16.02	0.8	99.2	0.0	1.86	0.67	0.49	0.26	4.0	0.008	1.20	1.0	0.05	17.85	0.01	1.307	33.95	0.00	3.2	96.8	0.0	-0.17	2.41	0.77	0.73	0.34	9491	1201	6	0	5	0	0	logfile
✔	6V4U	21048	2021-12-01	2019-12-01	3.8	4.31	—	4.1	0.002	0.47	0.0	0.04	9.64	0.00	2.273	4.54	0.00	6.1	93.9	0.0	-3.58	0.73	0.61	1.20	4.1	0.003	0.72	0.0	0.04	13.40	0.01	2.190	11.46	0.20	11.9	88.1	0.0	-1.59	0.78	0.76	0.67	1.58	7074	1106	3	0	0	0	0	logfile
✔	6WJ3	21687	2021-12-01	2020-04-11	3.9	4.46	4.05	4.2	0.009	0.50	0.0	0.04	12.83	0.00	2.210	8.22	0.00	4.7	95.2	0.1	-2.80	0.85	0.76	0.95	4.2	0.009	1.04	0.0	0.04	15.41	0.01	1.836	15.75	0.11	6.0	94.0	0.0	-0.67	1.72	0.86	0.78	1.14	8912	1168	10	1	1	0	0	logfile
✔	7BZ2	30249	2021-12-01	2020-04-26	3.82	3.99	—	3.9	0.005	0.66	0.0	0.05	14.76	0.00	2.101	12.28	0.00	10.2	89.8	0.0	-6.04	0.73	0.79	2.10	3.9	0.016	1.60	2.0	0.05	16.98	0.00	1.601	12.63	0.41	4.9	94.9	0.1	-3.01	1.58	0.72	0.78	1.15	7393	978	5	0	1	0	0	logfile
✔	6XYE	10649	2021-12-01	2020-01-30	4.3	4.37	4.28	4.3	0.010	1.29	0.0	0.09	10.03	0.01	2.315	11.42	0.00	4.7	95.3	0.0	-3.09	0.71	0.69	—	4.3	0.003	0.72	0.0	0.05	12.27	0.00	2.190	12.27	0.00	6.6	93.4	0.0	-1.61	1.72	0.71	0.69	—	9834	1293	6	0	0	0	0	logfile
✔	6LN6	0925	2021-12-01	2019-12-28	2.9	3.03	2.87	3.0	0.005	0.61	0.0	0.04	11.78	0.00	2.035	6.53	0.00	2.0	98.0	0.0	-3.94	0.65	0.82	3.55	3.0	0.004	0.65	0.0	0.04	15.40	0.00	2.034	6.40	1.85	1.8	98.2	0.0	0.35	1.33	0.68	0.85	3.39	7836	1010	1	0	4	0	0	logfile

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