Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oRL	13041	2022-12-14	2021-06-06	3.6	3.46	—	3.3	0.007	0.85	2.0	0.06	14.30	0.00	2.134	7.01	0.94	4.5	95.4	0.0	0.93	0.85	0.84	2.60	3.3	0.003	0.52	0.0	0.04	15.64	0.00	2.017	8.87	0.15	4.6	95.3	0.0	0.81	0.44	0.85	0.85	2.26	18852	2183	6	46	4	0	0	logfile
✔	7V2C	31640	2022-12-14	2021-08-08	2.9	3.03	—	3.2	0.007	0.87	5.0	0.05	15.02	0.01	1.632	11.79	0.39	4.0	95.9	0.1	0.64	0.78	0.87	3.28	3.2	0.002	0.56	0.0	0.04	16.29	0.00	2.112	8.26	1.23	3.5	96.4	0.0	1.11	1.56	0.76	0.87	2.71	68315	8269	70	0	46	0	0	logfile
✔	7VL9	32021	2022-12-12	2021-10-02	2.6	2.71	—	2.8	0.007	0.96	2.0	0.06	12.96	0.01	2.176	8.41	0.10	2.9	97.1	0.0	0.32	0.68	0.79	4.33	2.7	0.002	0.53	0.0	0.04	16.12	0.00	2.259	6.11	1.43	2.5	97.4	0.1	1.29	1.20	0.69	0.82	3.55	9605	1214	7	0	1	0	0	logfile
✘	7DR1	30821	2022-12-18	2020-12-25	3.2	3.26	—	3.2	0.024	2.40	0.0	0.07	20.40	0.03	1.216	8.14	0.75	5.7	94.0	0.3	-4.34	0.68	0.78	3.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22177	2114	18	0	108	0	0	logfile
✔	7NSG	12566	2022-12-12	2021-03-05	3.34	3.46	3.26	3.4	0.009	1.01	0.0	0.05	13.50	0.01	2.307	2.71	0.00	3.1	96.9	0.0	-3.82	0.65	0.84	2.86	3.4	0.004	0.56	0.0	0.04	14.54	0.00	2.180	5.38	0.19	2.4	97.6	0.0	1.36	2.46	0.63	0.85	2.32	10356	1290	6	0	24	0	0	logfile
✔	7VLA	32022	2022-12-12	2021-10-02	2.7	2.79	—	2.8	0.006	0.87	0.0	0.06	12.30	0.01	1.634	10.11	0.09	2.4	97.6	0.0	1.07	0.67	0.79	3.93	2.8	0.003	0.59	0.0	0.04	15.26	0.00	2.122	7.05	0.95	2.5	97.5	0.0	1.25	0.48	0.68	0.84	3.35	9675	1222	7	0	1	0	0	logfile
✔	7QJZ	14027	2022-12-11	2021-12-17	3.4	3.37	3.42	3.5	0.011	2.09	0.0	0.10	13.72	0.01	2.490	0.58	0.00	5.3	94.4	0.2	-3.28	0.40	0.74	4.32	3.5	0.003	0.71	0.0	0.05	14.98	0.00	2.231	6.83	0.26	4.2	95.8	0.0	-2.74	3.99	0.35	0.74	4.05	3378	444	6	0	0	0	0	logfile
✘	7DR0	30820	2022-12-18	2020-12-25	3.3	3.37	—	3.3	0.024	2.39	0.0	0.07	20.70	0.03	1.211	9.25	0.62	6.1	93.6	0.2	-4.98	0.71	0.81	3.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22745	2171	20	0	111	0	0	logfile
✔	7ADZ	11734	2022-12-13	2020-09-17	2.5	2.56	—	2.5	0.015	1.54	0.0	0.09	11.19	0.01	1.343	4.59	0.08	2.0	98.0	0.0	-0.11	0.64	0.85	4.72	2.5	0.002	0.57	0.0	0.04	16.31	0.00	2.237	3.25	1.47	2.5	97.5	0.0	0.53	0.66	0.66	0.88	4.03	67794	8508	30	0	0	0	0	logfile
✔	7QKG	14041	2022-12-11	2021-12-17	3.36	3.19	3.09	3.4	0.010	2.03	0.0	0.10	10.76	0.01	2.528	0.00	0.00	6.4	93.6	0.0	-1.98	0.38	0.80	4.23	3.5	0.003	0.60	0.0	0.05	13.51	0.00	2.262	5.27	0.00	2.6	97.4	0.0	-1.55	1.17	0.36	0.83	4.87	2469	162	3	0	0	0	1278	logfile
✔	7QDY	13927	2022-12-14	2021-12-01	3.1	2.87	3.19	3.0	0.009	1.11	0.0	0.06	14.48	0.01	1.910	11.97	0.00	5.7	94.2	0.1	-1.41	0.77	0.80	2.42	3.0	0.004	0.73	0.0	0.04	16.14	0.00	2.004	8.42	0.51	9.5	90.5	0.0	-0.36	0.44	0.80	0.86	2.22	22924	2991	5	6	0	0	0	logfile
✔	7QK3	14030	2022-12-11	2021-12-17	2.44	2.73	2.35	2.7	0.010	2.07	0.0	0.11	12.55	0.01	2.519	0.00	0.00	3.4	96.6	0.0	-3.04	0.38	0.77	5.65	2.7	0.003	0.73	0.0	0.05	16.22	0.00	2.309	3.65	1.28	4.0	96.0	0.0	-2.83	1.47	0.40	0.82	5.18	2742	183	3	0	0	0	1407	logfile
✔	7SB2	24961	2022-12-11	2021-09-23	3.4	3.66	3.14	3.3	0.007	0.79	0.0	0.04	14.92	0.00	2.178	23.87	0.00	8.4	91.4	0.2	-0.29	0.83	0.84	1.22	3.3	0.003	0.71	0.0	0.04	16.20	0.00	2.235	16.23	0.00	5.9	94.1	0.0	0.97	0.46	0.83	0.86	0.58	4715	598	2	0	0	0	0	logfile
✔	7E8T	31022	2022-12-15	2021-03-02	3.8	3.93	—	3.8	0.009	1.49	7.0	0.08	15.93	0.01	1.339	9.83	3.56	12.2	86.8	1.0	-4.98	0.81	0.75	1.65	3.8	0.004	0.77	0.0	0.05	16.23	0.00	2.146	12.99	0.37	10.8	89.0	0.2	-2.36	1.22	0.84	0.80	1.55	24894	3492	12	0	0	0	0	logfile
✘	7LX3	23565	2022-12-18	2021-03-03	3.45	3.77	—	3.6	0.020	1.70	6.0	0.10	9.67	0.01	2.198	1.46	0.10	0.9	99.1	0.0	1.02	0.81	0.85	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20196	2322	54	0	144	0	0	logfile
✔	7FiN	31604	2022-12-12	2021-07-31	3.1	3.73	—	3.6	0.004	0.81	0.0	0.06	8.00	0.01	2.249	4.42	0.00	2.5	97.5	0.0	-1.11	0.64	0.77	2.24	3.6	0.006	0.73	0.0	0.04	14.42	0.00	2.045	10.68	0.60	3.7	96.3	0.0	0.74	2.34	0.66	0.81	2.18	9524	1169	8	0	8	0	0	logfile
✔	7VH0	31982	2022-12-12	2021-09-20	3.46	3.78	—	3.8	0.005	0.81	1.0	0.05	15.55	0.00	2.266	9.60	3.66	6.2	93.5	0.3	-1.57	0.64	0.82	2.16	3.8	0.003	0.61	0.0	0.04	16.47	0.00	2.147	9.72	0.54	4.8	95.2	0.0	-1.02	0.46	0.64	0.84	1.96	8656	1109	6	0	1	0	0	logfile
✔	7RHQ	24466	2022-12-12	2021-07-18	3.53	3.57	—	3.5	0.009	1.05	0.0	0.06	10.62	0.01	2.153	3.32	0.09	5.7	94.3	0.1	-5.45	0.74	0.85	3.27	3.5	0.004	0.78	0.0	0.05	14.74	0.00	2.198	10.92	0.36	4.2	95.7	0.1	-0.25	1.27	0.74	0.84	2.40	10499	1305	8	0	15	0	0	logfile
✔	7VL8	32020	2022-12-12	2021-10-02	2.9	3.53	—	3.5	0.008	0.93	0.0	0.07	12.60	0.00	2.289	6.27	0.00	3.2	96.8	0.0	-1.45	0.56	0.71	1.61	3.5	0.003	0.61	0.0	0.04	15.74	0.00	2.170	8.49	2.45	2.4	97.6	0.0	0.40	1.25	0.47	0.64	1.35	8834	1132	6	0	1	0	0	logfile
✔	7EA3	31038	2022-12-22	2021-03-06	4.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	49714	6974	24	0	0	0	0	logfile

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