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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6W17 | 21502 | 2024-03-20 | 2020-03-03 | 3.9 | 3.99 | 3.93 | 3.9 | 0.003 | 0.59 | 0.0 | 0.04 | 13.38 | 0.00 | 1.894 | 5.87 | 0.00 | 4.9 | 95.1 | 0.0 | -3.15 | 0.87 | 0.82 | 1.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27396 | 3518 | 23 | 0 | 12 | 0 | 0 | logfile |
✔ | 7YAG | 33711 | 2024-03-16 | 2022-06-28 | 3.1 | 3.30 | 3.18 | 3.2 | 0.005 | 0.81 | 0.0 | 0.05 | 15.72 | 0.01 | 2.259 | 4.52 | 0.12 | 2.2 | 97.8 | 0.0 | 0.92 | 0.63 | 0.74 | 1.88 | 3.2 | 0.003 | 0.52 | 0.0 | 0.04 | 15.38 | 0.00 | 2.172 | 8.53 | 1.42 | 2.9 | 97.1 | 0.0 | 1.53 | 0.43 | 0.60 | 0.74 | 1.89 | 15456 | 999 | 3 | 0 | 2 | 0 | 7790 | logfile |
✔ | 6V9X | 21129 | 2024-03-17 | 2019-12-16 | 3.3 | 3.52 | 3.34 | 3.5 | 0.005 | 0.90 | 0.0 | 0.05 | 15.21 | 0.01 | 2.280 | 3.52 | 1.24 | 3.9 | 96.1 | 0.0 | -5.84 | 0.74 | 0.80 | 1.79 | 3.5 | 0.003 | 0.65 | 0.0 | 0.04 | 16.33 | 0.00 | 2.093 | 8.87 | 3.58 | 4.1 | 95.9 | 0.0 | 0.89 | 1.36 | 0.76 | 0.83 | 1.94 | 18084 | 2284 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6D9H | 7835 | 2024-03-11 | 2018-04-29 | 3.6 | 3.82 | — | 3.8 | 0.006 | 0.93 | 0.0 | 0.06 | 9.57 | 0.01 | 2.219 | 4.18 | 0.00 | 3.4 | 96.6 | 0.0 | -1.52 | 0.65 | 0.78 | 2.88 | 3.9 | 0.003 | 0.54 | 0.0 | 0.04 | 14.00 | 0.00 | 2.131 | 9.15 | 3.02 | 4.3 | 95.7 | 0.0 | 0.59 | 1.23 | 0.67 | 0.79 | 2.25 | 7023 | 892 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 6PDY | 20319 | 2024-03-15 | 2019-06-19 | 3.7 | 3.98 | — | 3.8 | 0.004 | 0.80 | 0.0 | 0.05 | 11.28 | 0.01 | 1.416 | 47.70 | 0.65 | 10.8 | 89.1 | 0.1 | -4.29 | 0.82 | 0.76 | 1.65 | 3.8 | 0.004 | 0.92 | 0.0 | 0.05 | 14.83 | 0.01 | 1.587 | 19.08 | 2.74 | 11.8 | 88.1 | 0.1 | -2.30 | 0.87 | 0.83 | 0.78 | 1.35 | 13096 | 1650 | 12 | 0 | 23 | 0 | 0 | logfile |
✔ | 7BWD | 30232 | 2024-03-18 | 2020-04-14 | 4.32 | 4.37 | — | 4.3 | 0.009 | 0.93 | 0.0 | 0.05 | 26.47 | 0.01 | 1.348 | 6.94 | 2.98 | 6.3 | 93.7 | 0.0 | -5.07 | 0.80 | 0.80 | — | 4.3 | 0.006 | 0.70 | 0.0 | 0.04 | 25.90 | 0.00 | 2.037 | 14.35 | 0.09 | 5.5 | 94.5 | 0.0 | -1.37 | 1.68 | 0.80 | 0.79 | — | 16042 | 1257 | 14 | 292 | 0 | 0 | 0 | logfile |
✔ | 7TT3 | 26109 | 2024-03-18 | 2022-01-31 | 4.3 | 4.47 | — | 4.4 | 0.006 | 0.99 | 0.0 | 0.05 | 10.46 | 0.01 | 2.059 | 4.09 | 0.00 | 1.1 | 98.9 | 0.0 | 1.09 | 0.73 | 0.75 | — | 4.4 | 0.003 | 0.60 | 0.0 | 0.04 | 12.71 | 0.00 | 1.937 | 7.75 | 0.00 | 4.3 | 95.7 | 0.0 | -0.28 | 1.09 | 0.72 | 0.78 | — | 20524 | 1338 | 6 | 0 | 0 | 0 | 10060 | logfile |
✔ | 6E3Y | 8978 | 2024-03-14 | 2018-07-16 | 3.3 | 4.08 | — | 3.7 | 0.007 | 1.00 | 0.0 | 0.06 | 9.69 | 0.01 | 2.282 | 4.51 | 0.00 | 2.6 | 97.4 | 0.0 | -3.02 | 0.78 | 0.81 | 2.06 | 3.7 | 0.003 | 0.69 | 0.0 | 0.04 | 14.25 | 0.00 | 2.180 | 12.24 | 2.08 | 2.8 | 97.2 | 0.0 | 0.55 | 1.35 | 0.79 | 0.84 | 1.73 | 9434 | 1194 | 7 | 0 | 1 | 0 | 0 | logfile |
✔ | 6UP7 | 20836 | 2024-03-10 | 2019-10-16 | 4.2 | 4.33 | — | 4.2 | 0.008 | 1.08 | 0.0 | 0.06 | 10.47 | 0.01 | 2.216 | 9.73 | 0.00 | 13.2 | 86.8 | 0.0 | -5.14 | 0.79 | 0.80 | — | 4.2 | 0.003 | 0.66 | 0.0 | 0.04 | 10.77 | 0.00 | 2.186 | 7.89 | 0.00 | 8.4 | 91.6 | 0.0 | -1.28 | 1.20 | 0.78 | 0.79 | — | 4166 | 676 | 5 | 0 | 10 | 0 | 0 | logfile |
✔ | 6QB8 | 4489 | 2024-03-11 | 2018-12-20 | 3.97 | 4.19 | — | 2.3 | 0.005 | 0.96 | 0.0 | 0.06 | 15.67 | 0.01 | 2.238 | 11.60 | 0.76 | 8.2 | 91.8 | 0.0 | -4.47 | 0.89 | 0.77 | 0.40 | 2.2 | 0.003 | 0.71 | 0.0 | 0.04 | 16.50 | 0.00 | 2.103 | 21.78 | 2.20 | 7.4 | 92.6 | 0.0 | -1.37 | 1.52 | 0.89 | 0.79 | 0.49 | 60035 | 7870 | 18 | 0 | 2 | 0 | 0 | logfile |
✔ | 7L6Q | 23207 | 2024-03-16 | 2020-12-23 | 2.5 | 2.32 | 2.53 | 2.2 | 0.016 | 1.21 | 0.0 | 0.07 | 19.81 | 0.00 | 2.227 | 5.38 | 3.96 | 8.1 | 91.9 | 0.0 | -1.94 | 0.82 | 0.83 | 4.88 | 2.2 | 0.004 | 0.65 | 0.0 | 0.05 | 16.78 | 0.00 | 2.131 | 5.75 | 2.59 | 6.0 | 94.0 | 0.0 | 0.54 | 1.17 | 0.84 | 0.85 | 4.54 | 13330 | 1555 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 7KR2 | 23000 | 2024-03-18 | 2020-11-18 | 3.2 | 3.55 | — | 3.5 | 0.020 | 1.65 | 0.0 | 0.09 | 11.59 | 0.01 | 2.415 | 1.77 | 0.65 | 1.7 | 98.3 | 0.0 | -0.74 | 0.77 | 0.76 | 3.76 | 3.5 | 0.003 | 0.66 | 0.0 | 0.04 | 16.04 | 0.00 | 2.045 | 12.77 | 1.71 | 1.7 | 98.3 | 0.0 | 0.86 | 0.91 | 0.75 | 0.80 | 3.32 | 19712 | 2492 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MP6 | 9187 | 2024-03-14 | 2018-10-05 | 3.54 | 4.04 | 3.81 | 4.0 | 0.006 | 1.10 | 0.0 | 0.06 | 10.39 | 0.01 | 2.439 | 3.39 | 0.00 | 7.9 | 92.1 | 0.0 | -6.02 | 0.70 | 0.81 | 2.60 | 4.0 | 0.003 | 0.86 | 0.0 | 0.04 | 15.82 | 0.00 | 2.180 | 9.47 | 5.76 | 7.3 | 92.7 | 0.0 | 0.45 | 1.45 | 0.68 | 0.82 | 1.27 | 9939 | 1338 | 6 | 0 | 3 | 0 | 0 | logfile |
✔ | 6T20 | 10364 | 2024-03-16 | 2019-10-07 | 3.7 | 3.40 | 3.60 | 3.6 | 0.019 | 1.69 | 5.0 | 0.09 | 12.28 | 0.01 | 1.317 | 6.53 | 0.00 | 4.4 | 95.6 | 0.0 | -1.10 | 0.68 | 0.80 | 2.72 | 3.5 | 0.007 | 0.87 | 0.0 | 0.05 | 16.87 | 0.01 | 1.824 | 12.07 | 3.62 | 4.9 | 95.1 | 0.0 | -0.06 | 2.39 | 0.69 | 0.82 | 2.24 | 14915 | 1885 | 15 | 0 | 15 | 0 | 0 | logfile |
✔ | 6T25 | 10367 | 2024-03-16 | 2019-10-07 | 3.6 | 3.57 | 3.47 | 3.7 | 0.018 | 1.59 | 0.0 | 0.09 | 12.25 | 0.01 | 1.335 | 4.64 | 0.32 | 2.5 | 97.5 | 0.0 | -0.96 | 0.67 | 0.81 | 3.25 | 3.6 | 0.004 | 0.72 | 0.0 | 0.05 | 16.14 | 0.00 | 2.006 | 9.06 | 2.21 | 1.9 | 98.1 | 0.0 | 0.64 | 1.80 | 0.68 | 0.83 | 2.35 | 14590 | 1840 | 15 | 0 | 15 | 0 | 0 | logfile |
✔ | 7D1Z | 30551 | 2024-03-16 | 2020-09-15 | 3.15 | 3.36 | — | 3.2 | 0.007 | 0.73 | 0.0 | 0.06 | 28.10 | 0.00 | 2.118 | 8.89 | 0.00 | 4.6 | 95.4 | 0.0 | -2.13 | 0.82 | 0.86 | 2.63 | 3.2 | 0.005 | 0.66 | 0.0 | 0.06 | 27.97 | 0.00 | 2.087 | 8.65 | 2.84 | 3.6 | 96.4 | 0.0 | 1.67 | 0.43 | 0.83 | 0.87 | 2.48 | 13327 | 929 | 11 | 290 | 0 | 0 | 0 | logfile |
✔ | 6UA5 | 20706 | 2024-03-19 | 2019-09-10 | 3.79 | 3.78 | 3.59 | 3.8 | 0.014 | 1.50 | 8.0 | 0.07 | 15.75 | 0.01 | 2.192 | 9.01 | 8.52 | 4.9 | 95.1 | 0.0 | -4.43 | 0.62 | 0.81 | 3.37 | 3.8 | 0.003 | 0.71 | 0.0 | 0.04 | 16.45 | 0.00 | 2.168 | 18.63 | 4.28 | 5.2 | 94.8 | 0.0 | -1.57 | 1.21 | 0.61 | 0.80 | 1.86 | 23080 | 3008 | 16 | 0 | 16 | 0 | 0 | logfile |
✔ | 7NPT | 12520 | 2024-03-11 | 2021-02-28 | 3.27 | 3.21 | 3.16 | 3.2 | 0.007 | 1.19 | 0.0 | 0.05 | 14.11 | 0.01 | 2.338 | 2.91 | 0.00 | 1.8 | 98.2 | 0.0 | -1.66 | 0.55 | 0.72 | 3.44 | 3.2 | 0.003 | 0.59 | 0.0 | 0.04 | 15.78 | 0.00 | 1.998 | 6.51 | 1.08 | 2.8 | 97.2 | 0.0 | 0.55 | 1.47 | 0.57 | 0.76 | 2.08 | 8609 | 552 | 3 | 0 | 0 | 0 | 4288 | logfile |
✔ | 7X0A | 32922 | 2024-03-12 | 2022-02-21 | 3.1 | 3.17 | — | 3.4 | 0.003 | 0.50 | 0.0 | 0.04 | 11.70 | 0.00 | 1.679 | 3.53 | 0.04 | 3.4 | 96.6 | 0.0 | -3.71 | 0.71 | 0.62 | 0.78 | 3.1 | 0.003 | 0.71 | 0.0 | 0.04 | 16.21 | 0.00 | 2.044 | 14.68 | 2.08 | 3.9 | 96.1 | 0.0 | 0.33 | 1.70 | 0.75 | 0.71 | 0.70 | 61215 | 8019 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WUJ | 21914 | 2024-03-11 | 2020-05-04 | 3.7 | 3.85 | — | 3.8 | 0.007 | 0.93 | 0.0 | 0.05 | 13.20 | 0.01 | 2.059 | 10.11 | 0.15 | 16.1 | 83.8 | 0.1 | -5.66 | 0.71 | 0.82 | 3.23 | 3.8 | 0.003 | 0.71 | 0.0 | 0.04 | 15.04 | 0.00 | 2.144 | 9.21 | 2.04 | 9.6 | 90.4 | 0.0 | -2.07 | 0.55 | 0.71 | 0.81 | 2.40 | 6699 | 884 | 3 | 0 | 0 | 0 | 0 | logfile |