Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7BW7	30229	2022-07-03	2020-04-13	4.1	4.55	4.28	4.4	0.008	1.06	0.0	0.06	16.20	0.01	2.050	40.19	0.00	23.4	76.6	0.0	-5.62	0.73	0.67	—	4.4	0.004	0.82	0.0	0.05	15.22	0.00	2.112	22.30	0.10	15.8	84.2	0.0	-3.98	0.72	0.71	0.66	—	8824	1091	3	0	0	0	0	logfile
✔	7BWA	30231	2022-07-03	2020-04-14	4.9	5.10	4.70	4.8	0.004	0.77	0.0	0.05	15.31	0.00	1.970	41.31	0.00	13.4	86.6	0.0	-4.15	0.80	0.64	—	4.8	0.003	0.74	0.0	0.05	14.24	0.00	2.128	19.77	0.00	8.6	91.4	0.0	-3.02	1.70	0.79	0.59	—	11670	1444	4	0	0	0	0	logfile
✔	7BWD	30232	2022-07-05	2020-04-14	4.32	4.37	—	4.3	0.008	0.92	0.0	0.05	26.49	0.01	1.348	6.94	2.98	6.3	93.7	0.0	-5.07	0.80	0.80	—	4.3	0.005	0.69	0.0	0.04	26.01	0.00	2.046	14.48	0.00	5.7	94.3	0.0	-1.62	1.67	0.80	0.79	—	16042	1257	14	292	0	0	0	logfile
✔	7D10	30542	2022-07-03	2020-09-12	3.52	3.70	—	3.7	0.007	1.05	0.0	0.06	10.87	0.01	2.249	4.93	0.00	8.9	90.6	0.5	-6.70	0.65	0.83	3.73	3.7	0.007	0.77	0.0	0.04	13.63	0.01	2.221	7.75	0.34	6.5	93.5	0.0	-1.43	1.21	0.63	0.82	2.73	6424	892	4	0	4	0	0	logfile
✘	7Lo6	23462	2022-07-04	2021-02-09	3.9	4.03	—	3.8	0.011	0.93	0.0	0.07	13.76	0.01	1.166	19.55	0.64	12.9	87.1	0.0	-5.44	0.85	0.85	2.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18006	2198	27	0	62	0	0	logfile
✘	7LoK	23465	2022-07-04	2021-02-10	3.9	4.11	—	4.0	0.006	1.12	4.0	0.07	13.46	0.01	1.259	14.91	0.39	11.9	88.0	0.2	-5.60	0.76	0.77	2.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14498	1999	19	0	32	0	0	logfile
✔	6LBH	0869	2022-07-03	2019-11-14	3.7	3.79	—	3.8	0.006	0.82	0.0	0.05	13.62	0.00	2.079	18.73	0.20	7.7	92.2	0.2	-2.87	0.75	0.83	2.95	3.8	0.004	0.73	0.0	0.04	15.57	0.00	2.079	15.54	0.30	6.6	93.4	0.0	-1.41	0.47	0.73	0.83	1.89	9219	1236	6	0	0	0	0	logfile
✔	7KF7	22845	2022-07-04	2020-10-13	2.8	3.09	—	3.1	0.004	0.67	0.0	0.04	15.43	0.01	1.869	6.74	0.04	4.9	95.1	0.0	-2.38	0.62	0.75	2.14	3.1	0.006	0.73	0.0	0.04	17.41	0.01	1.972	6.80	2.50	7.0	92.9	0.0	-0.48	0.74	0.56	0.80	2.49	47906	3065	4	0	1	0	24324	logfile
✔	7LY2	23582	2022-07-06	2021-03-05	2.5	2.61	2.57	2.6	0.010	1.21	3.0	0.07	10.49	0.01	2.427	0.74	0.19	1.6	98.4	0.0	0.74	0.72	0.76	4.27	2.6	0.005	0.68	0.0	0.05	14.64	0.00	2.106	6.50	1.88	1.5	98.5	0.0	1.11	1.19	0.76	0.80	4.34	33444	4470	27	0	69	0	0	logfile
✔	7LXZ	23580	2022-07-06	2021-03-05	2.6	2.71	2.68	2.7	0.011	1.20	0.0	0.07	10.71	0.01	2.435	0.85	0.00	2.0	98.0	0.0	0.49	0.74	0.77	3.89	2.7	0.006	0.78	0.0	0.05	15.27	0.00	2.070	5.78	2.30	1.6	98.4	0.0	0.69	0.58	0.76	0.81	3.84	34353	4557	33	0	78	0	0	logfile
✔	7KF8	22846	2022-07-08	2020-10-13	3.0	3.24	—	3.3	0.003	0.57	0.0	0.04	15.44	0.00	1.527	5.84	0.04	4.5	95.5	0.0	-2.34	0.70	0.79	1.38	3.2	0.003	0.65	0.0	0.04	17.00	0.01	1.967	8.65	1.55	6.1	93.9	0.0	0.43	0.86	0.70	0.83	2.10	47738	3055	5	0	2	0	24247	logfile
✔	7KF6	22844	2022-07-04	2020-10-13	3.4	3.42	—	3.4	0.003	0.53	0.0	0.05	12.63	0.00	1.809	7.77	0.00	5.6	94.4	0.0	-3.26	0.68	0.68	1.06	3.4	0.005	0.74	0.0	0.06	15.84	0.01	2.001	13.17	0.48	8.1	91.8	0.1	-1.05	1.08	0.72	0.78	1.19	47598	3045	6	0	3	0	24189	logfile
✔	7KF5	22843	2022-07-08	2020-10-13	3.2	3.46	—	3.6	0.003	0.55	0.0	0.04	15.93	0.02	2.007	9.20	0.24	4.2	95.8	0.0	-2.33	0.40	0.71	0.91	3.5	0.005	0.81	0.0	0.04	17.77	0.01	2.029	7.93	0.12	4.8	95.2	0.0	0.16	1.39	0.39	0.76	1.51	48069	3075	3	0	0	0	24414	logfile
✘	6XLM	22248	2022-07-05	2020-06-28	3.2	3.76	—	3.5	0.008	0.79	0.0	0.05	14.95	0.00	1.395	9.49	0.07	0.7	99.3	0.0	-2.52	0.82	0.84	2.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28244	3485	11	40	5	0	0	logfile
✔	7E33	30975	2022-07-03	2021-02-07	2.9	3.20	—	3.2	0.004	0.45	0.0	0.04	12.77	0.00	1.918	6.87	0.00	1.2	98.8	0.0	2.41	0.63	0.74	2.39	3.2	0.003	0.61	0.0	0.04	16.12	0.00	2.067	11.46	1.50	2.5	97.5	0.0	1.08	1.57	0.63	0.77	2.78	8538	1086	5	0	1	0	0	logfile
✔	7o1Q	12696	2022-07-06	2021-03-30	3.4	3.81	—	3.4	0.007	0.55	0.0	0.05	9.97	0.00	2.129	4.50	0.39	2.7	97.3	0.0	-0.21	0.85	0.81	4.50	3.5	0.004	0.54	0.0	0.05	13.14	0.00	2.003	7.36	0.00	3.7	96.3	0.0	0.27	2.17	0.80	0.81	4.18	32434	2051	7	0	0	0	15921	logfile
✘	7E2Y	30972	2022-07-03	2021-02-07	3.0	3.40	—	3.4	0.005	0.54	0.0	0.04	10.91	0.00	1.185	4.71	0.00	1.1	98.9	0.0	1.91	0.53	0.68	1.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6987	868	4	0	6	0	0	logfile
✘	7E2Z	30973	2022-07-03	2021-02-07	3.1	3.34	—	3.4	0.008	0.66	0.0	0.04	13.29	0.00	1.185	5.36	0.00	1.6	98.4	0.0	2.35	0.57	0.74	1.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6997	870	4	0	5	0	0	logfile
✔	7ME0	23786	2022-07-06	2021-04-06	2.48	2.69	2.55	2.6	0.006	0.55	0.0	0.05	14.32	0.00	2.135	5.82	4.96	2.0	98.0	0.0	-0.22	0.82	0.90	5.65	2.6	0.003	0.56	0.0	0.05	15.55	0.00	2.228	6.52	3.22	1.6	98.4	0.0	0.26	2.52	0.84	0.92	5.41	16386	2082	6	0	0	0	0	logfile
✔	7LSX	23508	2022-07-07	2021-02-18	3.61	4.24	3.84	4.1	0.003	0.55	0.0	0.04	12.74	0.00	1.942	5.21	0.00	2.2	97.8	0.0	0.77	0.80	0.78	2.36	4.1	0.003	0.55	0.0	0.04	14.02	0.00	2.059	7.53	0.33	3.8	96.2	0.0	0.75	0.42	0.79	0.77	2.20	44393	2838	13	0	0	0	22176	logfile

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