Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6VK0	21222	2023-04-21	2020-01-18	4.1	4.29	—	4.2	0.007	0.84	1.0	0.05	14.84	0.01	2.198	17.61	0.19	6.7	93.3	0.0	-3.49	0.60	0.78	—	4.2	0.004	0.76	0.0	0.04	15.05	0.00	2.085	12.85	0.10	5.9	94.1	0.0	0.29	1.56	0.60	0.77	—	9559	1160	4	0	0	0	0	logfile
✔	7W4G	32304	2023-04-25	2021-11-27	3.1	3.14	—	3.1	0.007	0.82	0.0	0.04	18.13	0.01	2.149	7.57	0.24	3.7	96.2	0.1	1.04	0.79	0.88	3.09	3.1	0.002	0.53	0.0	0.04	17.13	0.00	2.115	7.19	0.22	3.9	96.1	0.0	1.29	0.28	0.79	0.88	2.98	68260	8270	68	0	47	0	0	logfile
✔	7YHP	33835	2023-04-20	2022-07-14	3.1	3.03	3.01	3.1	0.008	0.55	0.0	0.04	18.78	0.00	2.216	6.19	1.81	4.1	95.9	0.0	0.44	0.68	0.76	3.14	3.1	0.003	0.51	0.0	0.04	21.18	0.00	2.075	9.08	0.00	3.6	96.4	0.0	0.22	0.78	0.68	0.79	3.03	3815	374	4	38	1	0	0	logfile
✔	6iP1	9697	2023-04-22	2018-11-01	3.9	4.05	—	4.0	0.006	1.03	0.0	0.05	11.71	0.00	1.321	7.91	0.34	7.5	92.5	0.0	-5.85	0.59	0.72	1.01	4.0	0.004	0.93	0.0	0.05	18.31	0.00	2.178	17.84	0.76	8.1	91.9	0.0	-0.42	1.25	0.61	0.75	0.15	11245	1420	8	0	0	0	0	logfile
✔	7BTW	30189	2023-04-21	2020-04-03	2.9	3.04	—	3.1	0.008	1.12	3.0	0.06	18.11	0.01	1.556	6.99	9.60	8.0	91.6	0.4	-5.22	0.65	0.76	3.14	3.1	0.005	0.78	0.0	0.05	18.31	0.01	2.103	11.97	3.66	7.9	92.0	0.1	-1.74	0.76	0.64	0.80	2.91	10246	1280	4	0	0	0	0	logfile
✔	7oCA	12802	2023-04-29	2021-04-26	3.4	3.03	—	3.2	0.009	0.96	0.0	0.04	14.22	0.00	2.080	4.67	0.15	3.5	96.5	0.0	0.20	0.72	0.80	3.80	3.1	0.002	0.50	0.0	0.04	14.80	0.00	2.242	4.78	0.27	1.9	98.1	0.0	1.50	0.44	0.75	0.85	3.24	29294	3802	22	0	72	0	0	logfile
✔	7ABF	11694	2023-04-27	2020-09-07	3.9	4.03	—	3.9	0.004	0.69	0.0	0.13	11.14	0.00	1.747	4.05	0.19	11.8	88.1	0.1	-3.73	0.73	0.72	2.68	4.0	0.003	0.69	0.0	0.04	13.37	0.00	1.948	8.07	0.48	10.4	89.6	0.0	-1.23	0.69	0.76	0.77	2.38	25904	3732	17	152	3	0	0	logfile
✔	7WSV	32768	2023-04-24	2022-02-01	4.5	4.52	4.26	4.5	0.003	0.74	0.0	0.04	13.53	0.00	2.263	10.81	0.00	4.5	95.5	0.0	0.72	0.52	0.75	—	4.5	0.003	0.74	0.0	0.04	13.28	0.01	2.088	11.08	0.00	4.9	95.1	0.0	1.40	1.35	0.52	0.76	—	16443	2051	7	0	0	0	0	logfile
✔	7UGN	26490	2023-04-27	2022-03-25	3.4	3.60	3.35	3.4	0.004	0.65	0.0	0.19	12.77	0.01	0.844	6.76	0.11	4.5	95.5	0.0	-3.47	0.83	0.84	2.43	3.4	0.006	0.74	0.0	0.05	15.34	0.00	2.166	8.64	0.63	6.6	93.4	0.0	-1.85	1.00	0.84	0.88	2.39	25698	3150	49	0	87	0	0	logfile
✔	6KWY	0781	2023-04-21	2019-09-09	2.72	2.94	—	2.9	0.011	1.23	3.0	0.10	10.94	0.01	1.627	8.33	0.95	5.5	94.4	0.1	-3.13	0.78	0.83	4.24	2.9	0.004	0.68	0.0	0.04	16.26	0.00	2.103	10.82	2.35	4.3	95.6	0.0	0.20	2.44	0.81	0.86	3.24	62499	7968	29	0	2	0	0	logfile
✔	7BTY	30191	2023-04-21	2020-04-03	3.2	3.16	—	3.2	0.010	1.15	2.0	0.07	15.86	0.01	2.247	5.43	0.70	10.2	89.1	0.6	-5.57	0.66	0.79	2.94	3.2	0.003	0.74	0.0	0.04	16.92	0.01	2.146	10.36	0.18	8.4	91.3	0.3	-2.31	0.51	0.68	0.82	2.41	10168	1268	4	0	0	0	0	logfile
✘	7ND4	12275	2023-04-29	2021-01-30	3.6	3.31	—	3.2	0.004	0.62	3.0	0.05	11.02	0.00	2.233	3.79	0.28	4.1	95.6	0.2	-0.12	0.74	0.79	2.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29848	3729	30	0	71	0	0	logfile
✔	7WK5	32559	2023-04-29	2022-01-08	3.66	3.93	—	3.7	0.005	0.84	1.0	0.05	13.40	0.01	1.646	3.40	0.27	3.9	96.0	0.1	-4.59	0.66	0.58	0.35	3.8	0.003	0.71	0.0	0.04	15.43	0.00	2.119	12.93	0.30	3.6	96.4	0.0	-1.37	1.01	0.68	0.64	0.63	29601	3750	4	0	0	0	0	logfile
✔	7V2E	31643	2023-04-25	2021-08-08	2.8	2.87	—	2.8	0.008	0.90	8.0	0.05	15.67	0.01	1.695	9.97	0.40	3.6	96.1	0.2	0.73	0.80	0.87	3.71	2.8	0.002	0.55	0.0	0.04	16.74	0.00	2.134	7.19	1.34	3.5	96.5	0.1	1.15	0.35	0.79	0.89	3.28	68244	8269	68	0	45	0	0	logfile
✔	7Q4W	13819	2023-04-24	2021-11-02	3.78	5.84	—	4.5	0.005	0.84	0.0	0.05	13.85	0.01	2.186	8.26	0.52	3.1	96.8	0.0	-0.36	0.83	0.65	-0.36	4.5	0.004	0.73	0.0	0.05	15.20	0.00	2.119	22.47	0.67	4.1	95.9	0.0	-0.03	0.63	0.92	0.84	0.36	18050	2364	12	0	22	0	0	logfile
✔	6N9X	0382	2023-04-25	2018-12-04	4.1	4.18	—	4.1	0.006	0.84	0.0	0.05	13.69	0.02	2.131	3.65	0.60	3.9	96.1	0.0	-4.04	0.74	0.78	—	4.1	0.003	0.65	0.0	0.04	14.75	0.00	1.857	8.78	0.05	4.6	95.4	0.0	-0.90	1.31	0.78	0.81	—	19658	2419	14	31	12	0	0	logfile
✔	6K41	9911	2023-04-20	2019-05-23	2.9	2.88	—	2.9	0.009	1.07	0.0	0.06	10.20	0.01	2.166	3.99	0.44	5.1	94.9	0.0	-2.62	0.73	0.85	4.09	2.9	0.003	0.60	0.0	0.04	15.25	0.00	2.060	6.02	2.85	3.6	96.4	0.0	0.62	0.67	0.75	0.83	3.41	8430	1077	6	0	1	0	0	logfile
✔	7W31	32269	2023-04-23	2021-11-24	3.1	3.16	—	3.1	0.007	0.80	1.0	0.04	17.37	0.01	1.986	11.85	0.36	3.9	96.0	0.1	0.79	0.77	0.83	2.48	3.1	0.003	0.61	0.0	0.04	17.00	0.00	2.123	10.25	0.36	3.9	96.1	0.0	0.89	0.44	0.78	0.86	2.49	66476	8174	66	0	36	0	0	logfile
✔	7FJo	31625	2023-04-28	2021-08-04	3.34	3.72	—	3.5	0.012	1.56	4.0	0.09	12.69	0.02	1.277	9.35	3.26	7.2	92.4	0.4	-1.06	0.55	0.36	0.19	3.5	0.008	0.85	0.0	0.05	14.79	0.00	2.080	12.88	0.42	5.7	94.2	0.0	-0.56	3.15	0.77	0.79	1.92	28547	3640	12	0	25	0	0	logfile
✔	6GYB	0089	2023-04-21	2018-06-28	3.28	3.42	—	3.4	0.008	0.92	0.0	0.06	9.51	0.01	2.304	4.03	0.22	6.6	93.4	0.0	-4.49	0.81	0.87	4.60	3.4	0.005	0.65	0.0	0.05	14.20	0.00	2.142	7.18	0.40	6.3	93.7	0.0	-1.08	0.55	0.81	0.89	3.74	59318	7546	42	0	0	0	0	logfile

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