Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6YSF	10895	2022-12-12	2020-04-22	3.4	3.49	3.31	3.5	0.004	0.77	0.0	0.04	15.31	0.00	1.874	13.85	0.90	8.5	91.5	0.0	-3.39	0.67	0.80	2.12	3.5	0.003	0.79	0.0	0.04	17.35	0.00	2.198	15.11	0.54	8.2	91.8	0.0	-0.25	0.69	0.67	0.81	1.40	10220	1327	7	0	0	0	0	logfile
✔	6W8X	21579	2022-12-16	2020-03-21	3.4	3.77	—	3.6	0.005	0.59	0.0	0.05	11.44	0.00	2.038	8.41	0.00	4.3	95.7	0.0	-2.19	0.59	0.86	2.04	3.6	0.004	0.61	0.0	0.05	13.41	0.00	2.072	7.12	0.06	3.1	96.9	0.0	-0.12	0.36	0.59	0.86	1.92	29766	4356	33	0	0	0	0	logfile
✔	6NTS	0510	2022-12-12	2019-01-30	3.63	4.31	3.00	3.6	0.016	0.51	0.0	0.03	13.21	0.00	1.917	2.11	0.00	3.8	96.2	0.0	-2.08	0.89	0.77	0.59	3.7	0.002	0.61	0.0	0.04	15.08	0.00	2.100	8.53	0.27	2.5	97.5	0.0	0.82	2.30	0.92	0.85	1.23	9956	1240	5	0	3	0	0	logfile
✔	6W8U	21578	2022-12-21	2020-03-21	3.8	4.14	—	4.0	0.004	0.54	0.0	0.05	12.25	0.00	2.062	10.63	0.48	4.4	95.6	0.0	-2.73	0.64	0.87	1.74	4.0	0.004	0.60	0.0	0.05	15.11	0.00	2.034	13.45	0.51	3.6	96.4	0.0	-0.78	1.14	0.66	0.86	1.27	41082	5740	41	0	0	0	0	logfile
✔	6VNW	21251	2022-12-15	2020-01-29	3.44	3.62	—	3.6	0.004	0.81	7.0	0.06	14.77	0.00	2.078	13.50	2.05	8.1	91.7	0.1	-3.20	0.68	0.66	1.23	3.6	0.004	0.72	0.0	0.04	16.34	0.00	2.186	12.39	0.40	6.7	93.3	0.0	-0.58	1.59	0.77	0.80	1.59	27486	3831	8	0	0	0	0	logfile
✔	6SiH	10210	2022-12-19	2019-08-09	4.7	5.01	—	4.7	0.005	0.54	0.0	0.03	12.61	0.00	1.931	8.52	0.00	5.9	94.1	0.0	-1.62	0.89	0.79	—	4.7	0.002	0.58	0.0	0.04	13.41	0.00	2.088	10.17	0.00	5.0	95.0	0.0	0.95	1.58	0.90	0.82	—	37310	4880	10	0	0	0	0	logfile
✔	6XQN	22290	2022-12-12	2020-07-09	3.3	3.76	—	3.7	0.005	0.67	1.0	0.04	14.56	0.00	1.922	7.08	2.87	2.5	97.5	0.0	0.13	0.65	0.70	1.45	3.7	0.003	0.61	0.0	0.04	16.74	0.00	2.088	6.36	0.12	2.1	97.9	0.0	3.39	1.33	0.69	0.75	1.47	9433	1290	10	0	1	0	0	logfile
✔	7C7S	30301	2022-12-12	2020-05-26	2.9	2.38	—	1.8	0.006	0.77	0.0	0.14	13.76	0.01	2.153	7.95	0.00	3.7	96.3	0.0	-2.62	0.83	0.80	2.82	1.8	0.003	0.72	0.0	0.04	16.01	0.00	2.176	9.78	3.05	4.1	95.9	0.0	-0.26	0.58	0.85	0.83	2.65	10915	1355	4	0	9	0	0	logfile
✔	7C7Q	30300	2022-12-12	2020-05-26	3.0	2.39	—	3.1	0.004	0.73	0.0	0.07	11.55	0.01	2.144	7.37	0.00	3.8	96.2	0.0	-2.81	0.78	0.76	3.24	2.1	0.004	0.70	0.0	0.05	15.09	0.00	2.177	7.74	1.87	4.4	95.6	0.0	-0.33	1.16	0.79	0.79	2.68	10894	1348	4	0	10	0	0	logfile
✔	6SKN	10229	2022-12-16	2019-08-16	4.5	4.78	4.35	4.5	0.004	0.61	0.0	0.04	12.96	0.00	1.979	8.64	0.18	1.6	98.4	0.0	-1.15	0.58	0.71	—	4.5	0.003	0.78	0.0	0.05	13.58	0.00	2.059	16.61	0.18	2.7	97.3	0.0	0.29	1.62	0.60	0.83	—	30984	3960	18	0	0	0	0	logfile
✔	6TQF	10550	2022-12-12	2019-12-16	3.5	3.81	—	3.7	0.009	0.96	0.0	0.06	15.62	0.01	2.092	3.00	0.09	5.2	94.8	0.0	-6.53	0.74	0.90	2.73	3.7	0.003	0.61	0.0	0.04	15.80	0.00	1.946	2.57	0.09	3.9	96.1	0.0	-3.90	0.35	0.74	0.90	2.92	10426	1268	4	0	14	0	0	logfile
✔	6WUC	21910	2022-12-12	2020-05-04	3.23	3.36	—	3.3	0.004	0.73	1.0	0.05	13.18	0.00	1.351	17.80	2.97	9.0	90.4	0.6	-3.18	0.71	0.85	2.31	3.3	0.004	0.67	0.0	0.04	15.79	0.00	2.136	10.66	0.17	8.8	91.0	0.2	0.17	0.97	0.72	0.87	1.97	10284	1266	5	0	0	0	0	logfile
✔	6P2J	20238	2022-12-11	2019-05-21	3.0	3.34	—	3.5	0.017	2.19	7.0	0.12	16.39	0.02	2.508	3.52	2.05	6.1	93.1	0.9	-3.61	0.52	0.72	2.73	3.4	0.003	0.71	0.0	0.04	17.43	0.00	2.210	8.69	2.74	6.1	93.9	0.0	0.12	0.68	0.54	0.75	1.73	7015	816	4	0	2	0	0	logfile
✔	6TQE	10549	2022-12-12	2019-12-16	4.3	4.14	—	4.2	0.007	1.04	0.0	0.06	14.59	0.01	2.077	2.78	0.76	8.6	91.4	0.0	-6.13	0.76	0.89	—	4.2	0.002	0.61	0.0	0.04	13.70	0.00	2.031	5.25	0.00	4.5	95.5	0.0	-2.89	1.27	0.75	0.88	—	10076	1268	4	0	4	0	0	logfile
✔	6P2P	20239	2022-12-13	2019-05-21	3.1	3.42	—	3.5	0.010	1.23	0.0	0.05	17.37	0.01	2.202	20.51	3.06	7.8	91.8	0.4	-3.49	0.58	0.76	1.86	3.5	0.003	0.66	0.0	0.04	17.06	0.00	2.070	9.57	0.35	5.8	94.2	0.0	0.25	1.78	0.58	0.77	1.63	13952	1630	8	0	4	0	0	logfile
✔	6VMS	21243	2022-12-12	2020-01-28	3.8	3.48	—	3.7	0.017	0.85	0.0	0.06	11.02	0.00	2.082	6.00	0.00	2.3	97.7	0.0	-0.27	0.57	0.71	1.53	3.6	0.003	0.75	0.0	0.04	15.44	0.00	2.166	11.83	0.00	2.4	97.6	0.0	0.73	1.29	0.64	0.82	1.88	8953	1135	5	0	1	0	0	logfile
✘	6PW6	20500	2022-12-18	2019-07-22	4.5	4.56	4.36	4.5	0.021	1.78	0.0	0.11	10.80	0.01	2.200	1.86	0.56	2.7	97.2	0.2	0.50	0.74	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15942	1842	45	0	108	0	0	logfile
✔	6LT0	0966	2022-12-13	2020-01-21	3.2	3.27	—	3.2	0.005	1.08	0.0	0.06	11.86	0.01	1.898	6.00	0.00	13.3	86.4	0.3	-5.35	0.59	0.57	1.80	3.2	0.003	0.77	0.0	0.05	15.98	0.00	2.103	13.97	0.51	9.9	89.9	0.1	-2.45	1.05	0.67	0.74	1.64	17774	2228	6	0	0	0	0	logfile
✔	6PE4	20322	2022-12-15	2019-06-20	3.1	3.17	—	3.1	0.008	1.10	1.0	0.06	10.56	0.01	2.164	2.74	0.30	5.7	94.2	0.2	-4.12	0.72	0.88	3.81	3.1	0.003	0.64	0.0	0.04	14.25	0.00	2.076	5.33	0.23	4.7	95.3	0.0	0.94	1.19	0.71	0.89	2.35	24914	3295	16	0	0	0	0	logfile
✔	6WQ0	21867	2022-12-12	2020-04-28	2.8	2.89	—	2.9	0.007	0.71	0.0	0.04	13.85	0.01	2.210	4.29	0.00	1.6	98.4	0.0	-0.40	0.60	0.90	4.25	2.9	0.004	0.60	0.0	0.04	15.18	0.00	2.253	4.22	0.95	0.8	99.2	0.0	3.12	1.11	0.59	0.90	3.77	57467	6026	48	602	0	0	0	logfile

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