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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6YSF | 10895 | 2022-12-12 | 2020-04-22 | 3.4 | 3.49 | 3.31 | 3.5 | 0.004 | 0.77 | 0.0 | 0.04 | 15.31 | 0.00 | 1.874 | 13.85 | 0.90 | 8.5 | 91.5 | 0.0 | -3.39 | 0.67 | 0.80 | 2.12 | 3.5 | 0.003 | 0.79 | 0.0 | 0.04 | 17.35 | 0.00 | 2.198 | 15.11 | 0.54 | 8.2 | 91.8 | 0.0 | -0.25 | 0.69 | 0.67 | 0.81 | 1.40 | 10220 | 1327 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6W8X | 21579 | 2022-12-16 | 2020-03-21 | 3.4 | 3.77 | — | 3.6 | 0.005 | 0.59 | 0.0 | 0.05 | 11.44 | 0.00 | 2.038 | 8.41 | 0.00 | 4.3 | 95.7 | 0.0 | -2.19 | 0.59 | 0.86 | 2.04 | 3.6 | 0.004 | 0.61 | 0.0 | 0.05 | 13.41 | 0.00 | 2.072 | 7.12 | 0.06 | 3.1 | 96.9 | 0.0 | -0.12 | 0.36 | 0.59 | 0.86 | 1.92 | 29766 | 4356 | 33 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NTS | 0510 | 2022-12-12 | 2019-01-30 | 3.63 | 4.31 | 3.00 | 3.6 | 0.016 | 0.51 | 0.0 | 0.03 | 13.21 | 0.00 | 1.917 | 2.11 | 0.00 | 3.8 | 96.2 | 0.0 | -2.08 | 0.89 | 0.77 | 0.59 | 3.7 | 0.002 | 0.61 | 0.0 | 0.04 | 15.08 | 0.00 | 2.100 | 8.53 | 0.27 | 2.5 | 97.5 | 0.0 | 0.82 | 2.30 | 0.92 | 0.85 | 1.23 | 9956 | 1240 | 5 | 0 | 3 | 0 | 0 | logfile |
✔ | 6W8U | 21578 | 2022-12-21 | 2020-03-21 | 3.8 | 4.14 | — | 4.0 | 0.004 | 0.54 | 0.0 | 0.05 | 12.25 | 0.00 | 2.062 | 10.63 | 0.48 | 4.4 | 95.6 | 0.0 | -2.73 | 0.64 | 0.87 | 1.74 | 4.0 | 0.004 | 0.60 | 0.0 | 0.05 | 15.11 | 0.00 | 2.034 | 13.45 | 0.51 | 3.6 | 96.4 | 0.0 | -0.78 | 1.14 | 0.66 | 0.86 | 1.27 | 41082 | 5740 | 41 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VNW | 21251 | 2022-12-15 | 2020-01-29 | 3.44 | 3.62 | — | 3.6 | 0.004 | 0.81 | 7.0 | 0.06 | 14.77 | 0.00 | 2.078 | 13.50 | 2.05 | 8.1 | 91.7 | 0.1 | -3.20 | 0.68 | 0.66 | 1.23 | 3.6 | 0.004 | 0.72 | 0.0 | 0.04 | 16.34 | 0.00 | 2.186 | 12.39 | 0.40 | 6.7 | 93.3 | 0.0 | -0.58 | 1.59 | 0.77 | 0.80 | 1.59 | 27486 | 3831 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SiH | 10210 | 2022-12-19 | 2019-08-09 | 4.7 | 5.01 | — | 4.7 | 0.005 | 0.54 | 0.0 | 0.03 | 12.61 | 0.00 | 1.931 | 8.52 | 0.00 | 5.9 | 94.1 | 0.0 | -1.62 | 0.89 | 0.79 | — | 4.7 | 0.002 | 0.58 | 0.0 | 0.04 | 13.41 | 0.00 | 2.088 | 10.17 | 0.00 | 5.0 | 95.0 | 0.0 | 0.95 | 1.58 | 0.90 | 0.82 | — | 37310 | 4880 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XQN | 22290 | 2022-12-12 | 2020-07-09 | 3.3 | 3.76 | — | 3.7 | 0.005 | 0.67 | 1.0 | 0.04 | 14.56 | 0.00 | 1.922 | 7.08 | 2.87 | 2.5 | 97.5 | 0.0 | 0.13 | 0.65 | 0.70 | 1.45 | 3.7 | 0.003 | 0.61 | 0.0 | 0.04 | 16.74 | 0.00 | 2.088 | 6.36 | 0.12 | 2.1 | 97.9 | 0.0 | 3.39 | 1.33 | 0.69 | 0.75 | 1.47 | 9433 | 1290 | 10 | 0 | 1 | 0 | 0 | logfile |
✔ | 7C7S | 30301 | 2022-12-12 | 2020-05-26 | 2.9 | 2.38 | — | 1.8 | 0.006 | 0.77 | 0.0 | 0.14 | 13.76 | 0.01 | 2.153 | 7.95 | 0.00 | 3.7 | 96.3 | 0.0 | -2.62 | 0.83 | 0.80 | 2.82 | 1.8 | 0.003 | 0.72 | 0.0 | 0.04 | 16.01 | 0.00 | 2.176 | 9.78 | 3.05 | 4.1 | 95.9 | 0.0 | -0.26 | 0.58 | 0.85 | 0.83 | 2.65 | 10915 | 1355 | 4 | 0 | 9 | 0 | 0 | logfile |
✔ | 7C7Q | 30300 | 2022-12-12 | 2020-05-26 | 3.0 | 2.39 | — | 3.1 | 0.004 | 0.73 | 0.0 | 0.07 | 11.55 | 0.01 | 2.144 | 7.37 | 0.00 | 3.8 | 96.2 | 0.0 | -2.81 | 0.78 | 0.76 | 3.24 | 2.1 | 0.004 | 0.70 | 0.0 | 0.05 | 15.09 | 0.00 | 2.177 | 7.74 | 1.87 | 4.4 | 95.6 | 0.0 | -0.33 | 1.16 | 0.79 | 0.79 | 2.68 | 10894 | 1348 | 4 | 0 | 10 | 0 | 0 | logfile |
✔ | 6SKN | 10229 | 2022-12-16 | 2019-08-16 | 4.5 | 4.78 | 4.35 | 4.5 | 0.004 | 0.61 | 0.0 | 0.04 | 12.96 | 0.00 | 1.979 | 8.64 | 0.18 | 1.6 | 98.4 | 0.0 | -1.15 | 0.58 | 0.71 | — | 4.5 | 0.003 | 0.78 | 0.0 | 0.05 | 13.58 | 0.00 | 2.059 | 16.61 | 0.18 | 2.7 | 97.3 | 0.0 | 0.29 | 1.62 | 0.60 | 0.83 | — | 30984 | 3960 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TQF | 10550 | 2022-12-12 | 2019-12-16 | 3.5 | 3.81 | — | 3.7 | 0.009 | 0.96 | 0.0 | 0.06 | 15.62 | 0.01 | 2.092 | 3.00 | 0.09 | 5.2 | 94.8 | 0.0 | -6.53 | 0.74 | 0.90 | 2.73 | 3.7 | 0.003 | 0.61 | 0.0 | 0.04 | 15.80 | 0.00 | 1.946 | 2.57 | 0.09 | 3.9 | 96.1 | 0.0 | -3.90 | 0.35 | 0.74 | 0.90 | 2.92 | 10426 | 1268 | 4 | 0 | 14 | 0 | 0 | logfile |
✔ | 6WUC | 21910 | 2022-12-12 | 2020-05-04 | 3.23 | 3.36 | — | 3.3 | 0.004 | 0.73 | 1.0 | 0.05 | 13.18 | 0.00 | 1.351 | 17.80 | 2.97 | 9.0 | 90.4 | 0.6 | -3.18 | 0.71 | 0.85 | 2.31 | 3.3 | 0.004 | 0.67 | 0.0 | 0.04 | 15.79 | 0.00 | 2.136 | 10.66 | 0.17 | 8.8 | 91.0 | 0.2 | 0.17 | 0.97 | 0.72 | 0.87 | 1.97 | 10284 | 1266 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6P2J | 20238 | 2022-12-11 | 2019-05-21 | 3.0 | 3.34 | — | 3.5 | 0.017 | 2.19 | 7.0 | 0.12 | 16.39 | 0.02 | 2.508 | 3.52 | 2.05 | 6.1 | 93.1 | 0.9 | -3.61 | 0.52 | 0.72 | 2.73 | 3.4 | 0.003 | 0.71 | 0.0 | 0.04 | 17.43 | 0.00 | 2.210 | 8.69 | 2.74 | 6.1 | 93.9 | 0.0 | 0.12 | 0.68 | 0.54 | 0.75 | 1.73 | 7015 | 816 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6TQE | 10549 | 2022-12-12 | 2019-12-16 | 4.3 | 4.14 | — | 4.2 | 0.007 | 1.04 | 0.0 | 0.06 | 14.59 | 0.01 | 2.077 | 2.78 | 0.76 | 8.6 | 91.4 | 0.0 | -6.13 | 0.76 | 0.89 | — | 4.2 | 0.002 | 0.61 | 0.0 | 0.04 | 13.70 | 0.00 | 2.031 | 5.25 | 0.00 | 4.5 | 95.5 | 0.0 | -2.89 | 1.27 | 0.75 | 0.88 | — | 10076 | 1268 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6P2P | 20239 | 2022-12-13 | 2019-05-21 | 3.1 | 3.42 | — | 3.5 | 0.010 | 1.23 | 0.0 | 0.05 | 17.37 | 0.01 | 2.202 | 20.51 | 3.06 | 7.8 | 91.8 | 0.4 | -3.49 | 0.58 | 0.76 | 1.86 | 3.5 | 0.003 | 0.66 | 0.0 | 0.04 | 17.06 | 0.00 | 2.070 | 9.57 | 0.35 | 5.8 | 94.2 | 0.0 | 0.25 | 1.78 | 0.58 | 0.77 | 1.63 | 13952 | 1630 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 6VMS | 21243 | 2022-12-12 | 2020-01-28 | 3.8 | 3.48 | — | 3.7 | 0.017 | 0.85 | 0.0 | 0.06 | 11.02 | 0.00 | 2.082 | 6.00 | 0.00 | 2.3 | 97.7 | 0.0 | -0.27 | 0.57 | 0.71 | 1.53 | 3.6 | 0.003 | 0.75 | 0.0 | 0.04 | 15.44 | 0.00 | 2.166 | 11.83 | 0.00 | 2.4 | 97.6 | 0.0 | 0.73 | 1.29 | 0.64 | 0.82 | 1.88 | 8953 | 1135 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 6PW6 | 20500 | 2022-12-18 | 2019-07-22 | 4.5 | 4.56 | 4.36 | 4.5 | 0.021 | 1.78 | 0.0 | 0.11 | 10.80 | 0.01 | 2.200 | 1.86 | 0.56 | 2.7 | 97.2 | 0.2 | 0.50 | 0.74 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15942 | 1842 | 45 | 0 | 108 | 0 | 0 | logfile |
✔ | 6LT0 | 0966 | 2022-12-13 | 2020-01-21 | 3.2 | 3.27 | — | 3.2 | 0.005 | 1.08 | 0.0 | 0.06 | 11.86 | 0.01 | 1.898 | 6.00 | 0.00 | 13.3 | 86.4 | 0.3 | -5.35 | 0.59 | 0.57 | 1.80 | 3.2 | 0.003 | 0.77 | 0.0 | 0.05 | 15.98 | 0.00 | 2.103 | 13.97 | 0.51 | 9.9 | 89.9 | 0.1 | -2.45 | 1.05 | 0.67 | 0.74 | 1.64 | 17774 | 2228 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PE4 | 20322 | 2022-12-15 | 2019-06-20 | 3.1 | 3.17 | — | 3.1 | 0.008 | 1.10 | 1.0 | 0.06 | 10.56 | 0.01 | 2.164 | 2.74 | 0.30 | 5.7 | 94.2 | 0.2 | -4.12 | 0.72 | 0.88 | 3.81 | 3.1 | 0.003 | 0.64 | 0.0 | 0.04 | 14.25 | 0.00 | 2.076 | 5.33 | 0.23 | 4.7 | 95.3 | 0.0 | 0.94 | 1.19 | 0.71 | 0.89 | 2.35 | 24914 | 3295 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WQ0 | 21867 | 2022-12-12 | 2020-04-28 | 2.8 | 2.89 | — | 2.9 | 0.007 | 0.71 | 0.0 | 0.04 | 13.85 | 0.01 | 2.210 | 4.29 | 0.00 | 1.6 | 98.4 | 0.0 | -0.40 | 0.60 | 0.90 | 4.25 | 2.9 | 0.004 | 0.60 | 0.0 | 0.04 | 15.18 | 0.00 | 2.253 | 4.22 | 0.95 | 0.8 | 99.2 | 0.0 | 3.12 | 1.11 | 0.59 | 0.90 | 3.77 | 57467 | 6026 | 48 | 602 | 0 | 0 | 0 | logfile |