Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PKV	20367	2023-08-19	2019-06-30	4.3	4.49	—	4.3	0.005	0.86	0.0	0.05	8.98	0.01	2.311	3.51	0.00	4.7	95.3	0.0	-3.45	0.67	0.78	—	4.3	0.003	0.60	0.0	0.04	9.87	0.00	2.258	7.99	0.00	4.9	95.1	0.0	1.30	1.92	0.68	0.79	—	28284	4260	4	0	88	0	0	logfile
✔	7XP6	33366	2023-08-10	2022-05-03	3.01	2.40	3.14	2.1	0.003	0.59	0.0	0.04	12.08	0.01	2.100	7.69	0.00	2.6	97.4	0.0	1.78	0.74	0.75	2.85	2.1	0.003	0.61	0.0	0.04	15.16	0.00	2.202	9.62	0.22	2.9	97.1	0.0	1.56	0.46	0.75	0.77	2.17	8336	1051	5	0	1	0	0	logfile
✔	5VA1	8650	2023-08-15	2017-03-24	3.7	5.99	—	4.4	0.008	1.02	0.0	0.06	11.84	0.00	1.715	8.09	1.30	4.6	95.4	0.0	-3.52	0.65	0.78	0.25	4.5	0.004	0.84	0.0	0.05	15.36	0.00	2.149	21.57	0.27	2.3	97.6	0.1	0.09	2.74	0.66	0.83	0.09	17628	2240	4	0	0	0	0	logfile
✔	7LV8	23529	2023-08-11	2021-02-24	3.4	3.85	3.57	3.8	0.003	0.65	0.0	0.04	27.28	0.00	1.334	3.06	0.17	2.7	97.3	0.0	-3.26	0.70	0.78	0.97	3.9	0.004	0.62	0.0	0.04	27.82	0.00	2.122	9.22	0.33	2.4	97.6	0.0	1.91	0.58	0.70	0.79	1.03	10651	764	10	242	0	0	0	logfile
✔	8A8W	15242	2023-08-19	2022-06-24	4.29	4.56	4.29	4.3	0.003	0.81	0.0	0.05	15.19	0.01	2.183	9.64	0.00	2.8	97.2	0.0	-0.24	0.85	0.80	—	4.3	0.002	0.66	0.0	0.04	14.63	0.00	2.156	15.57	0.00	2.6	97.4	0.0	0.92	0.43	0.85	0.81	—	27187	3398	13	0	35	0	0	logfile
✔	7LH3	23335	2023-08-11	2021-01-21	4.3	4.87	—	4.6	0.001	0.40	0.0	0.04	7.88	0.00	2.258	4.71	1.06	1.8	98.2	0.0	2.29	0.61	0.73	—	4.6	0.003	0.62	0.0	0.04	10.77	0.00	2.289	10.84	0.00	3.5	96.5	0.0	1.90	1.12	0.63	0.82	—	10452	1360	2	0	0	0	0	logfile
✔	7YK7	33889	2023-08-10	2022-07-21	2.75	2.37	2.86	2.2	0.006	0.80	0.0	0.05	14.10	0.00	2.115	9.26	0.11	6.0	94.0	0.0	-0.35	0.76	0.76	3.12	2.2	0.005	0.72	0.0	0.05	17.00	0.00	2.159	11.50	3.09	4.8	95.2	0.0	-0.17	1.16	0.78	0.79	2.69	8760	1122	6	0	1	0	0	logfile
✔	6E9E	9013	2023-08-10	2018-08-01	3.4	3.44	3.75	3.5	0.006	0.73	0.0	0.04	10.72	0.00	2.037	3.80	0.26	4.1	95.9	0.0	-4.95	0.77	0.82	4.40	3.4	0.002	0.55	0.0	0.04	14.06	0.00	2.236	5.64	0.13	2.1	97.9	0.0	0.73	1.11	0.78	0.89	3.69	8163	863	3	51	1	0	0	logfile
✔	8HCQ	34663	2023-08-11	2022-11-02	3.01	2.26	2.89	2.1	0.003	0.66	0.0	0.04	16.12	0.01	1.609	9.07	0.21	3.7	96.1	0.2	0.43	0.68	0.70	1.49	2.1	0.003	0.66	0.0	0.04	16.77	0.01	2.079	10.54	0.41	4.2	95.8	0.1	0.21	1.08	0.76	0.78	1.64	8991	1157	6	0	0	0	0	logfile
✔	7Y1R	33571	2023-08-10	2022-06-08	4.01	2.49	4.09	3.9	0.003	0.70	0.0	0.04	13.08	0.00	2.227	8.79	0.00	5.8	94.2	0.0	-2.79	0.59	0.55	—	2.1	0.003	0.78	0.0	0.04	13.24	0.01	2.208	11.89	0.00	8.3	91.7	0.0	-2.56	1.24	0.63	0.61	—	8565	1041	11	0	20	0	0	logfile
✔	7X2V	32972	2023-08-10	2022-02-26	3.09	2.34	—	2.1	0.007	0.93	0.0	0.05	11.89	0.01	2.115	6.17	0.10	5.5	94.5	0.0	-0.89	0.65	0.60	1.40	2.1	0.003	0.66	0.0	0.04	14.01	0.00	2.177	11.72	0.21	5.1	94.9	0.0	0.36	0.44	0.62	0.59	0.98	8755	1122	5	0	0	0	0	logfile
✔	7JG6	22312	2023-08-15	2020-07-18	3.7	2.39	3.79	2.2	0.008	1.40	0.0	0.00	6.55	0.01	2.433	0.00	0.00	2.9	97.0	0.1	-0.59	0.62	0.54	—	2.3	0.004	0.90	0.0	0.00	5.83	0.00	2.226	1.17	0.00	11.4	88.6	0.0	-0.80	1.65	0.71	0.69	—	19320	4819	20	0	11	0	0	logfile
✔	7PMY	13544	2023-08-11	2021-09-04	3.8	4.01	3.76	3.9	0.002	0.46	0.0	0.04	9.15	0.00	2.008	5.14	1.40	2.0	97.9	0.2	0.55	0.66	0.79	2.91	3.9	0.003	0.54	0.0	0.04	12.23	0.00	2.000	7.81	0.53	3.7	96.3	0.0	0.73	0.78	0.65	0.80	2.00	10499	659	2	0	0	0	5276	logfile
✔	6P48	20246	2023-08-11	2019-05-26	3.2	3.42	2.96	3.5	0.011	1.56	2.0	0.09	16.57	0.01	2.014	22.33	3.53	6.5	92.6	0.9	-6.05	0.59	0.65	1.57	3.5	0.004	0.81	0.0	0.05	17.04	0.01	2.152	18.22	0.56	10.0	89.8	0.2	-2.12	0.78	0.61	0.67	1.58	9936	1208	4	0	2	0	0	logfile
✔	7SP6	25366	2023-08-10	2021-11-02	3.1	3.58	—	3.5	0.004	0.58	0.0	0.04	14.28	0.00	2.308	5.40	0.00	1.5	98.5	0.0	1.72	0.61	0.75	1.78	3.5	0.003	0.57	0.0	0.04	15.78	0.00	2.130	7.76	0.32	2.2	97.8	0.0	1.17	1.24	0.63	0.81	2.50	5957	733	5	0	3	0	0	logfile
✔	8BMW	16126	2023-08-20	2022-11-11	3.5	4.40	—	4.0	0.003	0.54	1.0	0.04	12.14	0.00	2.196	11.99	0.49	6.1	93.8	0.1	0.69	0.90	0.85	0.96	4.0	0.004	0.78	0.0	0.04	15.39	0.00	2.099	19.86	0.52	6.0	93.9	0.1	-0.15	0.84	0.90	0.85	0.67	28658	3475	15	48	0	0	0	logfile
✔	7VUi	32129	2023-08-11	2021-11-02	3.3	2.40	—	3.2	0.003	0.63	0.0	0.04	14.77	0.00	2.165	10.92	0.00	4.1	95.8	0.1	-0.34	0.73	0.71	1.24	2.2	0.003	0.62	0.0	0.04	16.84	0.00	2.124	12.38	0.56	4.2	95.7	0.1	-0.14	0.43	0.75	0.76	1.68	8287	1034	7	0	3	0	0	logfile
✔	7RB2	24392	2023-08-22	2021-07-05	3.27	3.28	—	3.2	0.008	0.74	0.0	0.05	14.45	0.00	2.075	7.71	0.33	5.1	94.9	0.0	-1.06	0.74	0.85	4.44	3.2	0.006	0.61	0.0	0.05	15.48	0.00	2.133	6.76	0.11	3.2	96.8	0.0	-0.08	3.65	0.78	0.88	3.81	16386	2082	6	0	0	0	0	logfile
✔	7LiV	23386	2023-08-26	2021-01-28	3.6	3.63	—	3.6	0.009	0.95	1.0	0.05	13.49	0.01	1.080	26.90	2.97	4.9	94.5	0.6	-3.03	0.24	0.49	0.16	3.6	0.004	0.82	0.0	0.04	17.19	0.00	2.059	14.20	0.91	5.7	94.3	0.1	-1.01	1.65	0.39	0.81	1.26	47058	5903	12	0	0	0	0	logfile
✔	7JG7	22313	2023-08-15	2020-07-18	3.5	2.41	3.57	3.4	0.008	1.54	0.0	0.00	6.82	0.01	2.433	0.00	0.00	2.9	96.9	0.1	-0.73	0.63	0.55	—	2.3	0.006	1.16	0.0	0.00	7.34	0.01	2.119	4.50	0.00	14.7	85.1	0.1	-2.00	1.65	0.74	0.72	—	19316	4818	20	0	11	0	0	logfile

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