Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8F75	28895	2023-04-21	2022-11-18	4.0	4.26	4.21	4.1	0.004	0.80	0.0	0.05	15.36	0.01	2.258	12.37	0.62	5.6	94.4	0.0	-2.96	0.70	0.68	—	4.0	0.003	0.85	0.0	0.05	17.11	0.00	2.199	23.81	0.18	6.4	93.6	0.0	-2.49	2.65	0.72	0.72	—	9899	1218	3	0	0	0	0	logfile
✔	6SGX	10187	2023-04-22	2019-08-05	3.7	3.85	—	3.8	0.006	1.03	1.0	0.06	13.90	0.01	2.280	5.19	0.26	9.9	90.0	0.1	-4.82	0.59	0.81	1.45	3.8	0.004	0.74	0.0	0.04	15.49	0.01	2.227	9.85	0.69	10.5	89.5	0.0	-0.53	1.18	0.59	0.81	1.38	11227	1512	5	0	0	0	0	logfile
✔	6U5K	20648	2023-04-21	2019-08-27	3.5	3.54	—	3.5	0.005	0.78	0.0	0.05	12.14	0.01	2.210	5.29	3.00	7.0	93.0	0.0	-5.23	0.53	0.83	2.34	3.5	0.007	0.77	0.0	0.05	15.02	0.00	2.020	10.79	0.42	8.2	91.8	0.0	-1.95	1.22	0.53	0.85	2.05	110106	14520	54	0	0	0	0	logfile
✔	7Y9Y	33696	2023-04-23	2022-06-26	2.77	3.00	2.82	3.0	0.003	0.60	0.0	0.04	16.35	0.01	2.064	8.75	1.63	1.5	98.5	0.0	0.08	0.70	0.83	3.22	3.0	0.003	0.60	0.0	0.04	16.69	0.00	2.111	7.70	2.60	1.7	98.3	0.0	0.30	0.44	0.64	0.82	3.11	13781	1545	5	61	4	0	0	logfile
✔	7P02	13141	2023-04-21	2021-06-29	2.87	3.05	—	3.1	0.012	1.51	0.0	0.10	11.81	0.00	2.086	6.28	1.12	4.6	95.4	0.0	-1.72	0.66	0.81	3.20	3.1	0.003	0.68	0.0	0.04	15.93	0.00	2.119	11.22	3.27	1.4	98.6	0.0	0.22	0.75	0.64	0.84	3.30	9062	1138	7	0	2	0	0	logfile
✔	7V99	31811	2023-04-23	2021-08-24	3.54	4.33	—	3.3	0.002	0.53	0.0	0.03	14.51	0.00	2.258	7.85	0.10	5.9	94.1	0.1	-3.21	0.79	0.68	0.93	3.3	0.003	0.60	0.0	0.03	15.54	0.00	2.191	12.54	0.40	5.9	94.1	0.1	-0.02	1.36	0.82	0.75	0.86	14582	1170	5	249	0	0	0	logfile
✘	7MLZ	23914	2023-04-20	2021-04-29	3.71	4.27	3.83	3.9	0.004	0.82	0.0	0.05	12.96	0.01	2.150	18.13	0.00	17.4	82.5	0.2	-4.08	0.80	0.62	1.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4864	624	4	0	5	0	0	logfile
✔	7WAE	32383	2023-04-27	2021-12-14	2.64	3.01	2.60	2.9	0.003	0.56	0.0	0.05	13.58	0.00	1.339	7.98	0.27	3.2	96.6	0.2	0.26	0.79	0.87	2.86	2.9	0.004	0.55	0.0	0.04	15.61	0.00	1.895	7.38	1.80	3.5	96.5	0.0	0.28	0.40	0.79	0.89	2.86	24850	3227	16	0	19	0	0	logfile
✘	8DGJ	27427	2023-04-22	2022-06-23	4.02	4.32	4.05	4.1	0.007	1.24	2.0	0.06	14.25	0.01	2.213	11.07	0.13	7.4	92.3	0.3	-2.71	0.69	0.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13574	1689	2	0	0	0	0	logfile
✔	7UoT	26653	2023-04-27	2022-04-13	2.77	3.42	2.87	3.2	0.006	0.86	0.0	0.06	14.11	0.01	2.199	5.42	0.00	4.9	95.1	0.0	0.38	0.85	0.87	4.33	3.2	0.004	0.66	0.0	0.04	16.12	0.00	2.168	6.33	2.01	5.2	94.8	0.0	0.60	0.37	0.83	0.89	3.82	16834	1956	47	0	116	0	0	logfile
✔	7RWB	24713	2023-04-26	2021-08-19	3.9	4.19	3.83	4.1	0.003	0.53	0.0	0.04	12.89	0.00	2.103	8.14	0.10	4.4	95.5	0.1	0.92	0.72	0.69	1.21	4.1	0.003	0.54	0.0	0.04	14.64	0.00	2.101	8.82	0.10	4.9	95.1	0.0	1.17	0.36	0.74	0.71	0.79	23962	3408	8	0	0	0	0	logfile
✔	8EM4	28233	2023-04-21	2022-09-26	2.83	3.60	2.87	2.8	0.005	0.99	0.0	0.06	11.90	0.01	2.135	1.14	0.13	4.5	95.5	0.0	-0.47	0.72	0.66	2.74	2.8	0.004	0.67	0.0	0.05	13.12	0.00	2.148	7.58	0.57	5.0	95.0	0.0	-0.43	0.55	0.83	0.88	2.69	59410	7636	6	0	178	0	0	logfile
✔	7DNH	30783	2023-04-26	2020-12-09	3.64	4.22	—	4.2	0.008	1.08	0.0	0.06	15.01	0.01	1.791	6.16	0.78	9.6	90.2	0.2	-4.48	0.39	0.79	2.34	4.2	0.005	0.80	0.0	0.05	16.29	0.01	2.142	15.00	0.66	9.0	91.0	0.0	-2.66	1.31	0.38	0.79	2.02	21788	2762	7	0	0	0	0	logfile
✔	7TBF	25797	2023-04-20	2021-12-21	3.1	3.60	3.16	3.4	0.008	0.87	0.0	0.05	13.37	0.01	2.064	6.47	0.00	14.9	84.6	0.5	-3.53	0.83	0.81	3.20	3.4	0.004	0.76	0.0	0.05	15.35	0.00	2.240	8.78	0.69	14.6	85.0	0.5	-2.54	1.01	0.84	0.85	2.87	6617	857	6	0	2	0	0	logfile
✔	8B8Q	15919	2023-04-22	2022-10-04	2.94	3.52	2.88	3.4	0.004	0.54	0.0	0.04	12.63	0.00	2.126	11.28	7.93	4.8	95.2	0.0	0.94	0.66	0.80	2.92	3.4	0.004	0.74	0.0	0.04	15.10	0.00	2.065	13.57	3.07	4.7	95.3	0.0	0.72	1.06	0.68	0.81	2.62	11370	1382	4	0	6	0	0	logfile
✔	8DRQ	27681	2023-04-20	2022-07-21	4.16	4.28	4.60	4.1	0.004	0.89	0.0	0.05	15.60	0.01	2.283	15.85	0.00	5.9	94.1	0.0	-3.30	0.39	0.56	—	4.1	0.003	0.81	0.0	0.05	13.41	0.00	2.156	19.67	0.00	8.1	91.9	0.0	-3.21	1.78	0.41	0.56	—	3321	407	1	0	0	0	0	logfile
✔	7TFK	25875	2023-04-23	2022-01-06	3.25	3.36	—	3.3	0.003	0.65	0.0	0.04	15.67	0.01	2.092	10.12	0.13	3.2	96.8	0.0	0.18	0.69	0.63	1.06	3.3	0.003	0.64	0.0	0.04	17.29	0.00	1.932	15.90	0.27	4.3	95.7	0.0	0.30	0.43	0.71	0.68	1.14	14363	1680	14	45	9	0	0	logfile
✔	8ETJ	24396	2023-04-29	2022-10-17	3.2	3.29	—	3.1	0.004	0.61	0.0	0.04	17.20	0.00	2.061	12.38	0.81	4.9	94.9	0.2	-0.83	0.80	0.81	2.29	3.1	0.005	0.66	0.0	0.04	17.26	0.00	2.074	14.51	0.62	5.7	94.2	0.1	-0.18	1.17	0.82	0.84	2.15	79857	4979	36	1961	1	0	0	logfile
✔	6SCN	10143	2023-04-21	2019-07-24	3.1	3.62	3.00	3.2	0.007	0.84	0.0	0.05	10.50	0.01	2.037	14.15	0.82	4.9	94.3	0.8	-2.90	0.79	0.83	3.66	3.2	0.004	0.66	0.0	0.04	12.93	0.00	2.117	11.75	0.21	4.2	95.7	0.0	0.62	1.03	0.80	0.87	2.96	60582	7875	33	0	0	0	0	logfile
✔	8F7J	28905	2023-04-20	2022-11-18	4.32	4.45	4.63	8.9	0.005	0.92	0.0	0.05	15.44	0.01	2.282	15.12	0.26	5.7	94.3	0.0	-3.18	0.38	0.32	—	4.3	0.004	0.80	0.0	0.04	13.92	0.01	2.122	24.96	0.00	9.4	90.6	0.0	-3.21	2.94	0.44	0.45	—	3321	407	1	0	0	0	0	logfile

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