Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Vo1	21257	2022-04-06	2020-01-29	3.88	4.48	3.94	4.2	0.020	1.78	0.0	0.10	10.90	0.01	2.033	2.41	0.72	4.5	94.2	1.3	0.04	0.81	0.83	2.71	4.2	0.003	0.77	0.0	0.04	13.74	0.00	2.172	13.23	0.24	5.8	93.4	0.8	-0.55	1.45	0.81	0.84	2.26	19806	2382	42	0	87	0	0	logfile
✔	6S2E	10088	2022-04-05	2019-06-20	4.2	4.38	4.22	4.2	0.009	1.53	0.0	0.13	14.14	0.01	2.218	7.73	1.88	4.7	95.2	0.1	-1.45	0.81	0.75	—	4.2	0.004	0.73	0.0	0.04	13.40	0.00	2.088	18.11	0.00	4.1	95.9	0.0	-0.02	1.28	0.81	0.76	—	12459	1539	4	0	1	0	0	logfile
✔	6WBM	21593	2022-04-06	2020-03-26	2.86	3.86	—	3.4	0.007	0.82	0.0	0.05	17.58	0.00	2.192	15.24	0.80	5.6	94.4	0.0	-1.44	0.70	0.82	2.99	3.5	0.004	0.61	0.0	0.04	15.18	0.00	2.204	10.02	2.33	3.6	96.4	0.0	1.86	0.97	0.70	0.87	2.65	19201	2387	14	0	42	0	0	logfile
✔	6ZTN	11421	2022-04-12	2020-07-20	3.9	3.77	3.87	3.5	0.012	1.16	0.0	0.07	16.39	0.02	0.156	8.47	5.85	6.1	93.1	0.7	-2.23	0.88	0.86	1.01	3.5	0.007	0.78	1.0	0.04	16.12	0.01	0.999	18.87	0.41	5.2	94.8	0.0	-0.51	0.74	0.88	0.86	0.80	174624	8895	80	4872	489	0	0	logfile
✔	6SZ9	10350	2022-04-05	2019-10-02	3.7	4.00	3.73	3.9	0.005	0.82	0.0	0.05	15.57	0.01	2.293	6.37	0.27	3.2	96.8	0.0	-3.82	0.77	0.79	1.44	3.9	0.004	0.70	0.0	0.04	16.82	0.00	2.070	11.63	0.54	4.4	95.6	0.0	-0.36	0.57	0.77	0.79	1.10	10233	1290	6	0	1	0	0	logfile
✔	6WEJ	21649	2022-04-06	2020-04-02	2.6	3.13	—	3.1	0.015	1.49	16.0	0.06	15.89	0.01	2.097	8.77	2.80	4.3	95.7	0.0	-2.04	0.62	0.80	3.43	3.1	0.003	0.59	0.0	0.04	15.92	0.00	2.248	9.19	1.72	3.8	96.2	0.0	1.07	1.66	0.54	0.74	2.79	17665	2052	8	0	33	0	0	logfile
✔	6WEL	21651	2022-04-06	2020-04-02	2.5	2.95	—	2.9	0.011	1.09	0.0	0.06	16.36	0.01	2.111	8.33	3.02	3.9	96.1	0.0	-2.07	0.54	0.76	3.96	2.9	0.004	0.57	0.0	0.04	16.77	0.00	2.185	8.14	1.62	4.0	96.0	0.0	1.01	0.50	0.56	0.78	3.74	17725	2052	8	0	37	0	0	logfile
✔	6WEK	21650	2022-04-06	2020-04-02	2.7	3.19	—	3.1	0.019	1.56	24.0	0.08	15.90	0.01	1.988	10.13	4.95	4.8	95.2	0.0	-1.65	0.63	0.81	3.60	3.1	0.003	0.56	0.0	0.04	16.54	0.00	2.260	8.34	1.34	4.0	96.0	0.0	0.97	0.58	0.56	0.77	2.73	17616	2048	8	0	32	0	0	logfile
✘	6VFi	21173	2022-04-04	2020-01-05	4.54	4.63	4.96	4.5	0.018	1.47	0.0	0.09	10.93	0.01	2.449	0.53	0.00	1.3	98.7	0.0	1.21	0.80	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	58488	7560	48	0	0	0	0	logfile
✔	6WSL	21893	2022-04-06	2020-05-01	3.1	3.39	—	3.9	0.007	0.82	0.0	0.05	15.24	0.01	2.264	6.67	8.98	6.8	93.2	0.0	-5.33	0.54	0.84	2.29	3.9	0.003	0.68	0.0	0.04	16.48	0.00	2.196	12.34	0.36	4.7	95.3	0.0	-1.81	0.81	0.54	0.85	2.15	18204	2278	12	0	4	0	0	logfile
✔	6Vo0	21256	2022-04-06	2020-01-29	3.52	3.99	—	3.9	0.021	1.78	0.0	0.10	10.05	0.01	2.380	1.66	0.00	3.6	95.6	0.8	0.22	0.77	0.83	2.86	3.9	0.004	0.76	0.0	0.05	14.59	0.00	2.151	11.36	0.29	6.1	93.2	0.7	-0.68	1.96	0.75	0.81	1.92	19494	2364	36	0	72	0	0	logfile
✔	6Y50	10688	2022-04-05	2020-02-24	4.1	4.22	—	4.0	0.003	0.52	0.0	0.04	6.93	0.00	0.761	13.95	0.00	5.9	93.9	0.2	-3.48	0.68	0.68	—	4.0	0.004	0.67	0.0	0.05	9.54	0.00	2.003	8.73	0.00	11.0	88.9	0.1	-1.71	0.52	0.71	0.73	—	14916	2537	10	50	3	0	0	logfile
✔	6XBD	22116	2022-04-06	2020-06-05	3.05	3.71	—	3.6	0.004	0.66	0.0	0.04	11.69	0.00	2.104	8.95	0.06	3.5	96.5	0.0	-2.47	0.78	0.85	2.38	3.6	0.003	0.62	0.0	0.04	14.64	0.00	2.148	7.57	0.36	3.2	96.8	0.0	0.61	0.55	0.76	0.84	1.88	17433	2084	15	0	322	0	0	logfile
✔	6Y9A	10734	2022-04-04	2020-03-06	4.2	5.61	—	5.7	0.004	0.81	0.0	0.05	13.59	0.01	2.211	10.90	0.00	5.9	94.1	0.0	-1.17	0.53	0.44	—	5.6	0.003	0.72	0.0	0.04	13.34	0.01	2.133	17.52	0.00	5.6	94.4	0.0	0.15	1.38	0.53	0.62	—	5948	776	4	0	0	0	0	logfile
✔	6Y5V	10704	2022-04-05	2020-02-25	4.08	4.18	4.07	4.2	0.004	0.66	0.0	0.04	11.31	0.00	2.232	7.24	0.29	4.0	96.0	0.0	-2.25	0.65	0.84	—	4.2	0.003	0.67	0.0	0.04	12.68	0.00	2.166	10.45	0.00	4.1	95.9	0.0	0.92	2.46	0.65	0.83	—	13400	1758	6	0	8	0	0	logfile
✔	6W4S	21539	2022-04-04	2020-03-11	3.2	3.63	—	3.6	0.004	0.57	0.0	0.04	14.38	0.00	2.176	8.00	4.45	5.6	94.4	0.0	-1.13	0.61	0.85	2.37	3.6	0.004	0.68	0.0	0.04	15.50	0.01	2.156	8.80	0.56	3.8	96.2	0.0	1.78	0.45	0.58	0.84	2.13	4986	650	3	0	0	0	0	logfile
✔	6VLR	21232	2022-04-06	2020-01-24	4.42	4.62	4.43	4.4	0.021	1.74	0.0	0.10	10.31	0.01	2.046	1.26	0.13	2.6	97.2	0.2	1.05	0.72	0.80	—	4.4	0.003	0.67	0.0	0.04	12.40	0.00	2.141	12.51	0.04	4.4	95.5	0.1	0.68	2.73	0.73	0.83	—	21768	2611	37	0	92	0	0	logfile
✔	6ZP4	11335	2022-04-05	2020-07-08	2.9	2.98	—	2.6	0.007	0.92	0.0	0.05	15.90	0.01	2.079	4.89	0.33	5.3	94.7	0.1	-3.82	0.84	0.81	2.89	2.6	0.006	0.73	0.0	0.04	16.49	0.00	1.875	10.80	2.22	5.4	94.5	0.0	-0.48	0.45	0.84	0.81	2.56	117784	10408	59	1796	6	0	0	logfile
✔	6SGU	10185	2022-04-10	2019-08-05	3.27	3.39	3.20	3.3	0.005	0.72	0.0	0.04	12.69	0.00	2.197	8.74	0.22	3.9	96.0	0.0	-4.40	0.67	0.76	1.67	3.3	0.005	0.75	0.0	0.04	15.48	0.00	1.676	8.78	0.07	3.2	96.8	0.0	-0.82	0.91	0.70	0.84	2.68	52169	3407	5	0	0	0	26294	logfile
✔	6VJM	21219	2022-04-05	2020-01-16	3.97	4.44	—	4.1	0.005	0.91	0.0	0.06	14.29	0.01	2.297	6.77	0.19	8.3	91.7	0.0	-4.38	0.81	0.79	1.42	4.1	0.007	0.87	0.0	0.05	15.23	0.00	2.064	20.97	0.84	10.1	89.9	0.0	-1.79	1.60	0.81	0.80	1.48	10629	1369	8	0	11	0	0	logfile

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