Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TGE	25880	2022-07-05	2022-01-07	3.68	4.05	3.74	3.7	0.004	0.73	0.0	0.05	13.25	0.01	2.270	3.58	0.09	3.8	96.2	0.0	-1.30	0.80	0.72	0.89	3.7	0.003	0.55	0.0	0.04	14.36	0.00	2.093	9.57	0.21	3.9	96.1	0.0	-0.34	1.14	0.81	0.74	0.86	21461	2677	15	0	40	0	0	logfile
✔	7TP9	26049	2022-07-05	2022-01-25	3.48	3.86	—	3.5	0.013	1.76	6.0	0.09	12.66	0.01	2.518	0.13	0.94	6.9	92.4	0.7	-0.96	0.84	0.84	3.41	3.5	0.004	0.63	0.0	0.04	13.46	0.00	2.021	5.71	0.13	5.8	94.1	0.1	0.17	0.49	0.85	0.86	2.70	23199	2983	18	0	58	0	0	logfile
✔	7TP8	26048	2022-07-05	2022-01-25	3.4	3.77	—	3.4	0.013	1.75	6.0	0.09	12.89	0.01	2.519	0.18	0.98	6.3	92.8	0.9	-0.98	0.84	0.85	4.23	3.4	0.003	0.58	0.0	0.04	13.46	0.00	2.221	4.05	0.13	4.5	95.4	0.1	0.27	1.60	0.85	0.86	2.89	23199	2983	18	0	58	0	0	logfile
✔	7TPF	26053	2022-07-05	2022-01-25	3.4	3.74	—	3.4	0.013	1.75	3.0	0.09	12.67	0.01	2.518	0.13	0.72	6.1	93.5	0.3	-0.86	0.84	0.86	3.82	3.4	0.008	0.91	0.0	0.04	13.36	0.00	2.163	4.61	0.04	4.0	95.9	0.1	0.37	0.44	0.85	0.87	3.19	23199	2983	18	0	58	0	0	logfile
✔	7TL1	25983	2022-07-05	2022-01-18	3.5	3.79	3.47	3.6	0.003	0.66	0.0	0.05	11.12	0.01	2.302	3.36	0.00	3.6	96.4	0.0	-0.64	0.85	0.83	2.56	3.6	0.003	0.51	0.0	0.04	12.50	0.00	2.169	6.50	0.07	3.3	96.7	0.0	0.39	0.30	0.85	0.84	2.49	25109	3138	11	0	38	0	0	logfile
✔	7TF8	25865	2022-07-05	2022-01-06	3.36	3.60	3.29	3.4	0.004	0.70	0.0	0.05	11.82	0.01	2.280	2.81	0.07	3.4	96.6	0.0	-0.90	0.85	0.85	2.93	3.4	0.003	0.50	0.0	0.04	12.96	0.00	2.138	5.86	0.04	3.0	97.0	0.0	0.17	0.31	0.86	0.88	2.69	25732	3153	22	0	78	0	0	logfile
✔	7TEi	25846	2022-07-05	2022-01-05	3.4	3.66	3.40	3.5	0.004	0.66	0.0	0.05	12.87	0.01	2.268	2.71	0.00	3.5	96.5	0.0	-0.99	0.84	0.84	2.83	3.5	0.006	0.56	0.0	0.05	13.66	0.00	2.164	5.10	0.15	3.9	96.1	0.0	0.20	1.11	0.85	0.86	2.56	25420	3044	39	0	116	0	0	logfile
✔	7TL9	25984	2022-07-05	2022-01-18	3.5	3.83	3.52	3.5	0.004	0.70	0.0	0.06	13.24	0.01	2.260	3.68	0.00	3.9	96.1	0.0	-0.78	0.85	0.83	2.56	3.5	0.005	0.56	0.0	0.05	14.19	0.00	2.173	7.24	0.30	4.7	95.3	0.0	0.15	0.31	0.85	0.84	2.39	25016	3083	24	0	60	0	0	logfile
✘	7TAP	25780	2022-07-05	2021-12-21	2.8	3.00	—	3.0	0.010	1.37	4.0	0.06	13.88	0.01	1.160	8.25	1.37	1.3	98.6	0.1	0.26	0.64	0.81	3.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22520	2915	22	0	8	0	0	logfile
✔	7TBH	25799	2022-07-08	2021-12-22	2.3	3.49	—	2.8	0.001	0.43	0.0	0.03	8.12	0.00	2.141	6.38	0.43	7.8	91.4	0.8	0.80	0.78	0.76	0.52	2.8	0.003	0.64	0.0	0.04	13.85	0.01	2.127	8.11	0.39	2.0	97.6	0.4	2.81	0.94	0.81	0.87	2.74	51768	6288	48	0	0	0	0	logfile
✔	7TGW	25887	2022-07-05	2022-01-09	3.0	3.69	—	3.4	0.007	0.83	0.0	0.10	13.66	0.01	1.983	10.47	0.24	7.3	92.6	0.0	-2.46	0.86	0.88	3.64	3.4	0.003	0.67	0.0	0.05	14.95	0.00	2.107	7.13	0.76	5.5	94.5	0.0	-0.85	0.49	0.83	0.86	2.96	26617	3307	18	0	45	0	0	logfile
✔	7TGY	25889	2022-07-05	2022-01-09	3.0	3.76	—	3.5	0.010	0.84	0.0	0.06	13.16	0.01	1.886	9.67	0.18	7.8	92.1	0.0	-2.50	0.86	0.87	3.21	3.5	0.003	0.63	0.0	0.05	14.61	0.00	2.182	5.53	0.99	4.5	95.5	0.0	-0.42	1.04	0.85	0.87	2.45	25999	3254	15	0	42	0	0	logfile
✔	7TGX	25888	2022-07-05	2022-01-09	3.2	3.90	—	3.6	0.005	0.65	0.0	0.05	14.00	0.00	1.948	7.64	0.25	6.6	93.4	0.0	-2.14	0.85	0.86	3.04	3.6	0.003	0.60	0.0	0.04	15.14	0.00	2.140	5.74	0.14	4.8	95.2	0.0	-0.55	0.42	0.85	0.88	2.48	25778	3244	10	0	32	0	0	logfile
✔	7STB	25423	2022-07-07	2021-11-12	2.72	3.46	—	3.2	0.002	0.45	0.0	0.04	14.15	0.00	1.875	4.14	0.00	2.6	97.3	0.0	2.20	0.82	0.75	2.88	3.2	0.004	0.53	0.0	0.04	16.47	0.00	1.777	7.48	1.01	3.4	96.6	0.0	1.30	1.84	0.82	0.81	3.03	45369	2753	15	36	9	0	22555	logfile
✔	7N5G	24189	2022-07-02	2021-06-05	2.4	2.16	2.42	1.5	0.022	1.51	0.0	0.09	10.57	0.01	2.386	0.34	0.00	0.8	99.2	0.0	1.84	0.40	0.79	3.64	1.5	0.003	0.56	0.0	0.04	16.74	0.00	2.228	4.78	2.28	1.4	98.6	0.0	2.95	1.21	0.39	0.80	2.58	2926	371	1	0	1	0	0	logfile
✔	7TB3	25791	2022-07-08	2021-12-21	2.57	3.30	—	3.1	0.002	0.41	0.0	0.03	9.42	0.00	2.212	4.57	1.06	9.5	90.1	0.4	0.76	0.74	0.74	1.78	3.0	0.003	0.64	0.0	0.04	15.25	0.00	2.145	9.47	1.65	3.0	97.0	0.0	3.19	0.98	0.73	0.84	2.00	48000	5832	24	0	0	0	0	logfile
✔	7TYL	26184	2022-07-03	2022-02-13	3.3	3.46	3.18	3.5	0.003	0.59	0.0	0.04	12.73	0.00	2.245	6.58	0.43	1.8	98.1	0.2	-2.52	0.61	0.67	2.72	3.5	0.003	0.57	0.0	0.04	14.85	0.00	2.204	8.51	0.32	3.1	96.9	0.0	-0.02	0.42	0.66	0.78	2.30	8978	1156	6	0	1	0	0	logfile
✔	7S4V	24835	2022-07-03	2021-09-09	3.28	3.87	—	3.7	0.003	0.54	0.0	0.04	17.44	0.00	2.202	4.97	0.00	5.0	95.0	0.0	-1.46	0.80	0.80	2.24	3.7	0.002	0.52	0.0	0.03	18.46	0.00	2.235	5.36	0.00	4.4	95.6	0.0	-0.38	0.56	0.85	0.85	2.01	12215	1122	4	145	0	0	0	logfile
✘	7JPN	22416	2022-07-04	2020-08-09	3.24	2.33	3.25	2.1	0.004	0.63	2.0	0.05	14.27	0.00	1.919	11.70	0.55	4.1	95.9	0.0	0.43	0.76	0.77	3.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15040	1885	10	0	4	0	0	logfile
✔	7V1N	31628	2022-07-04	2021-08-05	3.2	3.33	—	3.2	0.013	1.21	4.0	0.07	19.76	0.01	1.973	28.55	16.75	20.1	78.9	1.0	-5.88	0.65	0.73	1.68	3.3	0.009	1.00	0.0	0.05	18.24	0.01	1.844	16.83	0.24	12.5	87.3	0.2	-3.56	0.59	0.64	0.73	1.81	19156	2403	2	0	0	0	0	logfile

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