Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7K63	22687	2022-12-14	2020-09-18	3.03	3.30	—	3.2	0.004	0.62	0.0	0.04	26.88	0.00	2.158	7.07	0.09	2.0	98.0	0.0	0.98	0.76	0.80	3.33	3.2	0.003	0.58	0.0	0.03	27.53	0.00	2.214	8.18	0.00	2.9	97.1	0.0	1.66	0.39	0.78	0.84	2.71	18330	1298	13	394	0	0	0	logfile
✔	7A5H	11643	2022-12-19	2020-08-21	3.3	2.71	3.14	3.0	0.014	1.25	0.0	0.07	18.96	0.01	1.312	5.55	10.36	6.6	93.2	0.2	-4.58	0.64	0.80	2.57	3.0	0.004	0.66	0.0	0.04	18.03	0.00	1.519	10.41	0.62	5.6	94.3	0.1	-0.99	1.16	0.64	0.82	2.52	102610	8434	66	1586	123	0	0	logfile
✔	6ZKo	11256	2022-12-13	2020-06-30	3.8	3.89	—	3.8	0.006	0.95	0.0	1.02	11.42	0.01	2.212	6.46	0.08	4.6	95.4	0.0	-3.41	0.59	0.81	2.36	3.8	0.008	1.62	0.0	0.31	16.04	0.00	1.938	16.97	0.36	4.1	95.9	0.0	-0.15	1.18	0.61	0.80	1.74	67877	8227	69	0	42	0	0	logfile
✔	6ZKQ	11258	2022-12-13	2020-06-30	3.3	3.43	—	3.4	0.009	1.03	0.0	1.02	11.65	0.01	2.210	5.41	0.06	4.3	95.7	0.0	-3.17	0.67	0.87	4.05	3.4	0.008	1.59	0.0	0.31	15.43	0.00	2.119	12.75	0.42	3.7	96.3	0.0	0.35	0.64	0.67	0.88	3.08	67353	8157	71	0	44	0	0	logfile
✔	7JGF	22325	2022-12-11	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.85	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.7	0.002	0.54	0.0	0.04	13.15	0.00	2.122	55.35	0.41	7.3	92.7	0.0	0.66	0.66	0.42	0.46	—	4477	532	1	0	0	0	30	logfile
✔	7B5E	12027	2022-12-12	2020-12-03	4.1	4.24	4.07	4.1	0.006	0.93	0.0	0.06	15.02	0.01	2.275	9.22	0.31	8.1	91.9	0.0	-3.56	0.65	0.76	—	4.1	0.003	0.67	0.0	0.04	14.37	0.00	2.202	13.55	0.00	6.5	93.5	0.0	0.11	1.21	0.64	0.75	—	11764	1436	4	0	4	0	0	logfile
✔	7L0S	23102	2022-12-11	2020-12-12	4.5	4.35	4.13	4.2	0.008	1.34	2.0	0.08	13.52	0.01	2.107	9.77	1.39	6.0	94.0	0.0	-3.19	0.61	0.63	—	4.2	0.003	0.78	0.0	0.05	13.31	0.00	2.121	18.49	0.23	4.4	95.6	0.0	0.06	3.46	0.64	0.74	—	7906	1001	5	0	0	0	0	logfile
✔	7L0Q	23100	2022-12-11	2020-12-12	4.3	4.28	4.01	4.2	0.007	1.07	1.0	0.06	14.95	0.01	2.196	8.09	0.70	6.2	93.5	0.3	-3.51	0.62	0.68	—	4.2	0.003	0.74	0.0	0.04	14.18	0.00	2.134	16.62	0.12	4.7	95.2	0.1	-0.50	1.17	0.64	0.73	—	7891	1002	5	0	0	0	0	logfile
✔	6ZKP	11257	2022-12-13	2020-06-30	3.2	3.28	—	3.2	0.010	1.04	0.0	1.02	11.93	0.01	2.241	5.54	0.13	3.8	96.2	0.0	-3.03	0.69	0.88	4.50	3.2	0.009	1.59	0.0	0.31	15.46	0.00	2.078	12.08	0.29	3.6	96.4	0.0	0.50	1.03	0.69	0.89	3.51	67353	8157	70	0	44	0	0	logfile
✔	7L0R	23101	2022-12-11	2020-12-12	4.2	4.12	4.05	4.0	0.007	1.37	2.0	0.08	13.58	0.01	2.106	10.29	1.05	6.6	93.4	0.0	-3.44	0.61	0.66	—	4.0	0.003	0.79	0.0	0.05	13.26	0.00	2.121	20.08	0.00	4.3	95.7	0.0	-0.22	3.46	0.62	0.74	—	6968	887	5	0	0	0	0	logfile
✘	6WM2	21847	2022-12-19	2020-04-20	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	73243	9171	56	0	63	0	0	logfile
✔	6ZKF	11247	2022-12-13	2020-06-30	2.8	2.93	—	2.9	0.008	1.02	0.0	1.03	11.69	0.01	2.232	6.04	0.06	3.4	96.6	0.0	-2.83	0.73	0.86	4.28	2.9	0.009	1.60	0.0	0.31	16.20	0.00	2.050	12.46	1.78	3.2	96.8	0.0	0.65	1.62	0.73	0.87	3.56	67440	8158	69	0	46	0	0	logfile
✔	6VE2	21152	2022-12-16	2019-12-28	4.3	4.80	4.34	4.2	0.006	1.23	0.0	0.07	5.37	0.01	2.173	16.97	0.00	4.7	94.9	0.5	-0.93	0.83	0.70	—	4.2	0.007	1.24	0.0	0.05	10.04	0.01	2.049	33.59	0.00	21.9	77.6	0.6	-4.75	1.35	0.89	0.76	—	30198	6153	21	0	0	0	0	logfile
✘	7K0K	22600	2022-12-18	2020-09-04	2.6	2.96	—	2.9	0.006	0.68	0.0	0.05	12.44	0.00	1.915	7.70	0.00	2.2	97.8	0.0	0.53	0.68	0.85	4.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7615	964	4	0	2	0	0	logfile
✔	7B5D	12026	2022-12-12	2020-12-03	3.3	3.47	3.28	3.5	0.005	0.84	0.0	0.05	15.10	0.01	2.225	4.85	0.96	7.2	92.8	0.0	-3.54	0.68	0.80	2.47	3.5	0.003	0.63	0.0	0.04	16.10	0.00	2.221	9.26	0.00	5.4	94.6	0.0	0.06	1.51	0.68	0.83	2.33	11462	1402	2	0	0	0	0	logfile
✔	7K60	22685	2022-12-14	2020-09-17	3.12	3.33	—	3.2	0.004	0.64	0.0	0.04	26.72	0.00	2.175	9.38	0.09	2.0	98.0	0.0	0.43	0.74	0.73	1.70	3.2	0.003	0.59	0.0	0.03	27.28	0.00	2.146	10.85	0.63	2.5	97.5	0.0	1.09	0.55	0.75	0.77	1.43	18330	1298	13	394	0	0	0	logfile
✔	7CKX	30393	2022-12-13	2020-07-20	3.54	3.65	—	3.6	0.003	0.50	0.0	0.04	13.48	0.00	2.160	12.95	2.09	3.2	96.8	0.0	-3.07	0.59	0.71	1.45	3.6	0.004	0.78	0.0	0.05	16.71	0.00	2.121	20.74	0.70	4.9	95.1	0.0	-1.22	0.75	0.61	0.75	1.19	8112	1035	5	0	2	0	0	logfile
✔	6XiS	22199	2022-12-14	2020-06-21	3.9	4.13	—	4.0	0.009	1.33	0.0	0.08	13.73	0.01	2.225	14.67	3.19	1.8	97.9	0.3	0.47	0.62	0.64	0.79	4.0	0.003	0.76	0.0	0.04	15.49	0.00	2.098	12.12	0.93	5.0	94.7	0.3	0.00	1.58	0.67	0.73	0.71	9436	1240	4	0	0	0	0	logfile
✔	7K48	22661	2022-12-12	2020-09-15	3.6	4.15	4.07	4.1	0.010	1.23	0.0	0.06	17.88	0.01	2.233	5.29	3.40	7.4	92.6	0.0	-3.52	0.48	0.75	1.45	4.1	0.004	0.88	0.0	0.04	18.57	0.00	2.020	21.11	0.74	6.5	93.5	0.0	-0.14	1.96	0.47	0.74	1.45	8480	1048	8	0	0	0	0	logfile
✔	7B5C	12025	2022-12-12	2020-12-03	3.7	3.81	3.61	3.8	0.005	0.86	0.0	0.05	15.21	0.01	2.239	7.51	0.78	5.9	94.1	0.0	-3.64	0.62	0.77	1.51	3.8	0.003	0.70	0.0	0.04	16.53	0.01	2.120	11.37	0.47	5.5	94.5	0.0	-0.30	0.68	0.62	0.76	1.12	11770	1436	4	0	4	0	0	logfile

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