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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7K63 | 22687 | 2022-12-14 | 2020-09-18 | 3.03 | 3.30 | — | 3.2 | 0.004 | 0.62 | 0.0 | 0.04 | 26.88 | 0.00 | 2.158 | 7.07 | 0.09 | 2.0 | 98.0 | 0.0 | 0.98 | 0.76 | 0.80 | 3.33 | 3.2 | 0.003 | 0.58 | 0.0 | 0.03 | 27.53 | 0.00 | 2.214 | 8.18 | 0.00 | 2.9 | 97.1 | 0.0 | 1.66 | 0.39 | 0.78 | 0.84 | 2.71 | 18330 | 1298 | 13 | 394 | 0 | 0 | 0 | logfile |
✔ | 7A5H | 11643 | 2022-12-19 | 2020-08-21 | 3.3 | 2.71 | 3.14 | 3.0 | 0.014 | 1.25 | 0.0 | 0.07 | 18.96 | 0.01 | 1.312 | 5.55 | 10.36 | 6.6 | 93.2 | 0.2 | -4.58 | 0.64 | 0.80 | 2.57 | 3.0 | 0.004 | 0.66 | 0.0 | 0.04 | 18.03 | 0.00 | 1.519 | 10.41 | 0.62 | 5.6 | 94.3 | 0.1 | -0.99 | 1.16 | 0.64 | 0.82 | 2.52 | 102610 | 8434 | 66 | 1586 | 123 | 0 | 0 | logfile |
✔ | 6ZKo | 11256 | 2022-12-13 | 2020-06-30 | 3.8 | 3.89 | — | 3.8 | 0.006 | 0.95 | 0.0 | 1.02 | 11.42 | 0.01 | 2.212 | 6.46 | 0.08 | 4.6 | 95.4 | 0.0 | -3.41 | 0.59 | 0.81 | 2.36 | 3.8 | 0.008 | 1.62 | 0.0 | 0.31 | 16.04 | 0.00 | 1.938 | 16.97 | 0.36 | 4.1 | 95.9 | 0.0 | -0.15 | 1.18 | 0.61 | 0.80 | 1.74 | 67877 | 8227 | 69 | 0 | 42 | 0 | 0 | logfile |
✔ | 6ZKQ | 11258 | 2022-12-13 | 2020-06-30 | 3.3 | 3.43 | — | 3.4 | 0.009 | 1.03 | 0.0 | 1.02 | 11.65 | 0.01 | 2.210 | 5.41 | 0.06 | 4.3 | 95.7 | 0.0 | -3.17 | 0.67 | 0.87 | 4.05 | 3.4 | 0.008 | 1.59 | 0.0 | 0.31 | 15.43 | 0.00 | 2.119 | 12.75 | 0.42 | 3.7 | 96.3 | 0.0 | 0.35 | 0.64 | 0.67 | 0.88 | 3.08 | 67353 | 8157 | 71 | 0 | 44 | 0 | 0 | logfile |
✔ | 7JGF | 22325 | 2022-12-11 | 2020-07-19 | 4.69 | 4.81 | — | 4.8 | 0.002 | 0.62 | 0.0 | 0.04 | 13.16 | 0.01 | 2.109 | 26.85 | 0.41 | 4.6 | 95.4 | 0.0 | -0.87 | 0.39 | 0.43 | — | 4.7 | 0.002 | 0.54 | 0.0 | 0.04 | 13.15 | 0.00 | 2.122 | 55.35 | 0.41 | 7.3 | 92.7 | 0.0 | 0.66 | 0.66 | 0.42 | 0.46 | — | 4477 | 532 | 1 | 0 | 0 | 0 | 30 | logfile |
✔ | 7B5E | 12027 | 2022-12-12 | 2020-12-03 | 4.1 | 4.24 | 4.07 | 4.1 | 0.006 | 0.93 | 0.0 | 0.06 | 15.02 | 0.01 | 2.275 | 9.22 | 0.31 | 8.1 | 91.9 | 0.0 | -3.56 | 0.65 | 0.76 | — | 4.1 | 0.003 | 0.67 | 0.0 | 0.04 | 14.37 | 0.00 | 2.202 | 13.55 | 0.00 | 6.5 | 93.5 | 0.0 | 0.11 | 1.21 | 0.64 | 0.75 | — | 11764 | 1436 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7L0S | 23102 | 2022-12-11 | 2020-12-12 | 4.5 | 4.35 | 4.13 | 4.2 | 0.008 | 1.34 | 2.0 | 0.08 | 13.52 | 0.01 | 2.107 | 9.77 | 1.39 | 6.0 | 94.0 | 0.0 | -3.19 | 0.61 | 0.63 | — | 4.2 | 0.003 | 0.78 | 0.0 | 0.05 | 13.31 | 0.00 | 2.121 | 18.49 | 0.23 | 4.4 | 95.6 | 0.0 | 0.06 | 3.46 | 0.64 | 0.74 | — | 7906 | 1001 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7L0Q | 23100 | 2022-12-11 | 2020-12-12 | 4.3 | 4.28 | 4.01 | 4.2 | 0.007 | 1.07 | 1.0 | 0.06 | 14.95 | 0.01 | 2.196 | 8.09 | 0.70 | 6.2 | 93.5 | 0.3 | -3.51 | 0.62 | 0.68 | — | 4.2 | 0.003 | 0.74 | 0.0 | 0.04 | 14.18 | 0.00 | 2.134 | 16.62 | 0.12 | 4.7 | 95.2 | 0.1 | -0.50 | 1.17 | 0.64 | 0.73 | — | 7891 | 1002 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZKP | 11257 | 2022-12-13 | 2020-06-30 | 3.2 | 3.28 | — | 3.2 | 0.010 | 1.04 | 0.0 | 1.02 | 11.93 | 0.01 | 2.241 | 5.54 | 0.13 | 3.8 | 96.2 | 0.0 | -3.03 | 0.69 | 0.88 | 4.50 | 3.2 | 0.009 | 1.59 | 0.0 | 0.31 | 15.46 | 0.00 | 2.078 | 12.08 | 0.29 | 3.6 | 96.4 | 0.0 | 0.50 | 1.03 | 0.69 | 0.89 | 3.51 | 67353 | 8157 | 70 | 0 | 44 | 0 | 0 | logfile |
✔ | 7L0R | 23101 | 2022-12-11 | 2020-12-12 | 4.2 | 4.12 | 4.05 | 4.0 | 0.007 | 1.37 | 2.0 | 0.08 | 13.58 | 0.01 | 2.106 | 10.29 | 1.05 | 6.6 | 93.4 | 0.0 | -3.44 | 0.61 | 0.66 | — | 4.0 | 0.003 | 0.79 | 0.0 | 0.05 | 13.26 | 0.00 | 2.121 | 20.08 | 0.00 | 4.3 | 95.7 | 0.0 | -0.22 | 3.46 | 0.62 | 0.74 | — | 6968 | 887 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 6WM2 | 21847 | 2022-12-19 | 2020-04-20 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 73243 | 9171 | 56 | 0 | 63 | 0 | 0 | logfile |
✔ | 6ZKF | 11247 | 2022-12-13 | 2020-06-30 | 2.8 | 2.93 | — | 2.9 | 0.008 | 1.02 | 0.0 | 1.03 | 11.69 | 0.01 | 2.232 | 6.04 | 0.06 | 3.4 | 96.6 | 0.0 | -2.83 | 0.73 | 0.86 | 4.28 | 2.9 | 0.009 | 1.60 | 0.0 | 0.31 | 16.20 | 0.00 | 2.050 | 12.46 | 1.78 | 3.2 | 96.8 | 0.0 | 0.65 | 1.62 | 0.73 | 0.87 | 3.56 | 67440 | 8158 | 69 | 0 | 46 | 0 | 0 | logfile |
✔ | 6VE2 | 21152 | 2022-12-16 | 2019-12-28 | 4.3 | 4.80 | 4.34 | 4.2 | 0.006 | 1.23 | 0.0 | 0.07 | 5.37 | 0.01 | 2.173 | 16.97 | 0.00 | 4.7 | 94.9 | 0.5 | -0.93 | 0.83 | 0.70 | — | 4.2 | 0.007 | 1.24 | 0.0 | 0.05 | 10.04 | 0.01 | 2.049 | 33.59 | 0.00 | 21.9 | 77.6 | 0.6 | -4.75 | 1.35 | 0.89 | 0.76 | — | 30198 | 6153 | 21 | 0 | 0 | 0 | 0 | logfile |
✘ | 7K0K | 22600 | 2022-12-18 | 2020-09-04 | 2.6 | 2.96 | — | 2.9 | 0.006 | 0.68 | 0.0 | 0.05 | 12.44 | 0.00 | 1.915 | 7.70 | 0.00 | 2.2 | 97.8 | 0.0 | 0.53 | 0.68 | 0.85 | 4.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7615 | 964 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7B5D | 12026 | 2022-12-12 | 2020-12-03 | 3.3 | 3.47 | 3.28 | 3.5 | 0.005 | 0.84 | 0.0 | 0.05 | 15.10 | 0.01 | 2.225 | 4.85 | 0.96 | 7.2 | 92.8 | 0.0 | -3.54 | 0.68 | 0.80 | 2.47 | 3.5 | 0.003 | 0.63 | 0.0 | 0.04 | 16.10 | 0.00 | 2.221 | 9.26 | 0.00 | 5.4 | 94.6 | 0.0 | 0.06 | 1.51 | 0.68 | 0.83 | 2.33 | 11462 | 1402 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K60 | 22685 | 2022-12-14 | 2020-09-17 | 3.12 | 3.33 | — | 3.2 | 0.004 | 0.64 | 0.0 | 0.04 | 26.72 | 0.00 | 2.175 | 9.38 | 0.09 | 2.0 | 98.0 | 0.0 | 0.43 | 0.74 | 0.73 | 1.70 | 3.2 | 0.003 | 0.59 | 0.0 | 0.03 | 27.28 | 0.00 | 2.146 | 10.85 | 0.63 | 2.5 | 97.5 | 0.0 | 1.09 | 0.55 | 0.75 | 0.77 | 1.43 | 18330 | 1298 | 13 | 394 | 0 | 0 | 0 | logfile |
✔ | 7CKX | 30393 | 2022-12-13 | 2020-07-20 | 3.54 | 3.65 | — | 3.6 | 0.003 | 0.50 | 0.0 | 0.04 | 13.48 | 0.00 | 2.160 | 12.95 | 2.09 | 3.2 | 96.8 | 0.0 | -3.07 | 0.59 | 0.71 | 1.45 | 3.6 | 0.004 | 0.78 | 0.0 | 0.05 | 16.71 | 0.00 | 2.121 | 20.74 | 0.70 | 4.9 | 95.1 | 0.0 | -1.22 | 0.75 | 0.61 | 0.75 | 1.19 | 8112 | 1035 | 5 | 0 | 2 | 0 | 0 | logfile |
✔ | 6XiS | 22199 | 2022-12-14 | 2020-06-21 | 3.9 | 4.13 | — | 4.0 | 0.009 | 1.33 | 0.0 | 0.08 | 13.73 | 0.01 | 2.225 | 14.67 | 3.19 | 1.8 | 97.9 | 0.3 | 0.47 | 0.62 | 0.64 | 0.79 | 4.0 | 0.003 | 0.76 | 0.0 | 0.04 | 15.49 | 0.00 | 2.098 | 12.12 | 0.93 | 5.0 | 94.7 | 0.3 | 0.00 | 1.58 | 0.67 | 0.73 | 0.71 | 9436 | 1240 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K48 | 22661 | 2022-12-12 | 2020-09-15 | 3.6 | 4.15 | 4.07 | 4.1 | 0.010 | 1.23 | 0.0 | 0.06 | 17.88 | 0.01 | 2.233 | 5.29 | 3.40 | 7.4 | 92.6 | 0.0 | -3.52 | 0.48 | 0.75 | 1.45 | 4.1 | 0.004 | 0.88 | 0.0 | 0.04 | 18.57 | 0.00 | 2.020 | 21.11 | 0.74 | 6.5 | 93.5 | 0.0 | -0.14 | 1.96 | 0.47 | 0.74 | 1.45 | 8480 | 1048 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7B5C | 12025 | 2022-12-12 | 2020-12-03 | 3.7 | 3.81 | 3.61 | 3.8 | 0.005 | 0.86 | 0.0 | 0.05 | 15.21 | 0.01 | 2.239 | 7.51 | 0.78 | 5.9 | 94.1 | 0.0 | -3.64 | 0.62 | 0.77 | 1.51 | 3.8 | 0.003 | 0.70 | 0.0 | 0.04 | 16.53 | 0.01 | 2.120 | 11.37 | 0.47 | 5.5 | 94.5 | 0.0 | -0.30 | 0.68 | 0.62 | 0.76 | 1.12 | 11770 | 1436 | 4 | 0 | 4 | 0 | 0 | logfile |