Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7L2o	23135	2023-04-23	2020-12-17	3.64	3.93	3.68	3.9	0.010	0.89	0.0	0.05	12.84	0.00	1.989	3.56	1.87	5.0	95.0	0.0	-0.84	0.54	0.78	2.34	3.9	0.004	0.71	0.0	0.04	16.29	0.00	2.140	11.29	0.35	6.9	93.1	0.0	0.43	0.91	0.54	0.77	1.38	15800	1920	8	0	4	0	0	logfile
✔	7oS2	13046	2023-04-24	2021-06-07	2.76	3.34	—	3.1	0.005	0.56	0.0	0.04	12.08	0.00	2.209	7.96	0.93	2.2	97.8	0.0	0.65	0.90	0.89	4.03	3.1	0.002	0.60	0.0	0.04	14.70	0.00	2.205	8.56	1.53	2.1	97.9	0.0	1.13	0.50	0.90	0.90	3.31	16485	2046	3	0	0	0	0	logfile
✔	7MEX	23806	2023-04-23	2021-04-08	3.35	4.06	3.35	3.4	0.003	0.52	0.0	0.04	14.14	0.00	1.562	8.11	0.06	2.2	97.8	0.0	0.70	0.83	0.78	2.31	3.4	0.002	0.55	0.0	0.04	15.28	0.00	2.066	9.02	0.06	2.3	97.7	0.0	1.59	0.51	0.89	0.87	1.94	15941	1967	4	0	7	0	0	logfile
✔	3JAE	6345	2023-04-22	2015-06-08	3.9	2.88	—	3.5	0.006	1.26	0.0	0.05	9.27	0.01	2.202	13.69	0.00	0.9	99.1	0.0	-1.69	0.70	0.74	1.87	3.2	0.003	0.87	0.0	0.04	13.61	0.00	2.157	15.62	0.16	2.8	97.2	0.0	0.08	1.49	0.72	0.82	1.59	12825	1690	10	0	10	0	0	logfile
✔	8H14	34424	2023-04-27	2022-09-30	3.39	3.39	3.33	3.4	0.005	0.95	6.0	0.06	13.84	0.01	2.177	2.50	1.35	3.6	96.4	0.0	-0.84	0.78	0.84	2.92	3.4	0.003	0.55	0.0	0.04	14.67	0.00	2.212	3.63	0.41	2.6	97.4	0.0	-0.02	0.39	0.79	0.87	2.92	24750	3087	6	0	45	0	0	logfile
✔	6KPG	0745	2023-04-21	2019-08-15	3.0	3.46	—	3.4	0.014	1.09	0.0	0.06	14.62	0.01	2.219	7.70	0.74	7.4	92.5	0.1	-5.14	0.65	0.79	3.29	3.4	0.003	0.71	0.0	0.04	16.67	0.00	2.188	11.58	3.18	3.8	96.2	0.0	-1.70	0.60	0.65	0.80	2.63	8805	1135	6	0	1	0	0	logfile
✔	5MSH	3565	2023-04-20	2017-01-04	4.25	3.96	—	20.0	0.014	1.56	0.0	0.07	9.56	0.01	2.323	3.07	0.00	6.1	92.5	1.5	-0.93	0.01	0.02	—	3.7	0.003	0.76	0.0	0.05	12.62	0.01	2.155	14.78	0.00	6.1	93.8	0.2	-0.92	2.67	0.04	0.14	—	4287	551	2	0	0	0	0	logfile
✔	7DUQ	30866	2023-04-21	2021-01-11	2.5	2.82	—	2.8	0.006	0.85	0.0	0.06	13.35	0.00	2.126	10.72	0.30	2.3	97.7	0.0	-0.86	0.66	0.78	3.15	2.8	0.003	0.56	0.0	0.04	16.30	0.00	2.141	10.92	1.78	2.2	97.8	0.0	0.79	1.58	0.54	0.74	2.29	9602	1174	7	0	8	0	0	logfile
✘	8CVP	27012	2023-04-21	2022-05-18	3.4	3.75	3.50	3.7	0.003	0.58	0.0	0.04	13.05	0.00	2.231	4.87	0.12	6.1	93.8	0.1	-1.69	0.69	0.74	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10112	1484	2	0	1	0	0	logfile
✔	8B1R	15803	2023-04-26	2022-09-12	3.2	3.47	3.13	3.3	0.004	0.63	0.0	0.05	9.18	0.00	2.210	7.58	0.34	0.7	99.3	0.0	0.06	0.84	0.87	2.66	3.3	0.004	0.55	0.0	0.04	13.23	0.00	2.221	5.19	0.17	1.6	98.4	0.0	2.27	0.64	0.86	0.90	2.75	21953	2746	6	0	1	0	0	logfile
✔	6WXR	21962	2023-04-21	2020-05-11	3.2	3.68	—	3.6	0.011	0.96	0.0	0.04	14.15	0.01	1.518	10.46	0.19	6.6	93.3	0.1	-3.63	0.71	0.80	2.51	3.6	0.004	0.70	0.0	0.04	15.38	0.00	2.109	7.58	0.19	6.9	93.0	0.1	-1.00	1.17	0.70	0.82	2.25	10409	1303	5	0	12	0	0	logfile
✔	8G8E	29846	2023-04-19	2023-02-17	4.2	7.38	5.01	5.9	0.004	0.73	0.0	0.04	28.65	0.00	2.277	15.90	0.79	1.5	98.5	0.0	0.35	0.81	0.66	—	6.0	0.003	0.63	0.0	0.03	28.39	0.00	2.243	15.67	0.00	2.9	97.1	0.0	-0.23	1.84	0.91	0.85	—	2464	140	3	64	0	0	0	logfile
✔	5TQQ	8435	2023-04-22	2016-10-24	3.76	2.84	—	3.8	0.008	1.52	32.0	0.09	12.22	0.01	2.136	6.30	0.89	4.7	95.2	0.1	-0.21	0.64	0.72	1.71	3.8	0.003	0.68	0.0	0.04	14.63	0.00	2.137	13.21	0.30	2.5	97.5	0.0	1.58	1.52	0.69	0.83	1.42	12574	1642	6	0	0	0	0	logfile
✔	7K0R	22610	2023-04-23	2020-09-04	3.3	3.86	—	3.5	0.010	0.79	0.0	0.05	13.37	0.00	2.122	3.75	1.05	2.3	97.7	0.0	-1.08	0.85	0.76	1.40	3.5	0.002	0.51	0.0	0.04	14.35	0.00	2.303	5.33	0.06	1.7	98.3	0.0	0.69	1.07	0.89	0.85	3.03	16038	2070	12	0	12	0	0	logfile
✔	7S82	24889	2023-04-21	2021-09-17	3.5	3.79	3.54	3.8	0.005	0.72	0.0	0.04	13.22	0.00	2.097	17.60	0.00	7.7	92.3	0.0	-1.35	0.78	0.82	2.97	3.8	0.004	0.71	0.0	0.04	15.52	0.00	2.228	17.60	0.55	5.4	94.6	0.0	-1.13	1.56	0.78	0.82	2.04	4904	634	4	0	0	0	0	logfile
✔	6XJA	22204	2023-04-24	2020-06-23	4.0	4.11	—	3.7	0.023	1.93	31.0	0.12	18.04	0.01	0.468	73.73	18.43	6.1	92.2	1.7	-1.93	0.69	0.54	—	3.8	0.006	0.92	0.0	0.05	16.57	0.01	2.021	31.92	1.09	10.6	89.2	0.2	-2.48	2.56	0.76	0.68	—	16441	2156	5	0	0	0	0	logfile
✔	7XSE	33424	2023-04-28	2022-05-13	3.6	3.90	3.46	3.1	0.005	0.56	0.0	0.04	16.31	0.00	2.019	6.64	0.00	2.3	97.7	0.0	1.42	0.77	0.72	1.58	3.1	0.005	0.61	0.0	0.04	17.84	0.00	2.002	11.46	0.13	3.6	96.4	0.0	1.12	0.77	0.79	0.77	1.43	75229	8667	41	276	11	0	0	logfile
✔	7A5J	11645	2023-04-19	2020-08-21	3.1	2.70	3.04	3.0	0.009	0.99	0.0	0.05	17.09	0.01	1.265	4.18	0.84	5.2	94.7	0.2	-4.41	0.63	0.73	2.66	2.9	0.003	0.61	0.0	0.04	17.63	0.00	1.870	9.80	0.57	4.2	95.8	0.0	-0.43	1.38	0.66	0.79	2.47	106132	8540	70	1694	204	0	0	logfile
✘	7CUM	30472	2023-04-26	2020-08-23	3.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22214	1358	4	0	19	0	10852	logfile
✔	8D81	27242	2023-04-21	2022-06-07	3.9	4.14	3.89	4.1	0.004	0.65	0.0	0.05	14.71	0.00	2.266	9.87	1.32	7.1	92.4	0.6	-2.23	0.73	0.74	2.42	4.1	0.004	0.62	0.0	0.04	16.31	0.00	2.145	10.15	0.41	7.8	91.8	0.3	-1.86	0.51	0.75	0.81	2.10	9248	1198	2	0	2	0	0	logfile

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