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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7TLY | 25990 | 2023-11-13 | 2022-01-19 | 3.0 | 3.01 | 2.93 | 3.0 | 0.010 | 1.32 | 2.0 | 0.08 | 9.97 | 0.00 | 2.556 | 1.69 | 0.00 | 2.5 | 97.5 | 0.0 | 0.36 | 0.64 | 0.76 | 4.98 | 3.0 | 0.003 | 0.62 | 0.0 | 0.04 | 13.83 | 0.00 | 2.186 | 3.71 | 2.81 | 3.3 | 96.7 | 0.0 | -0.93 | 1.02 | 0.68 | 0.82 | 4.76 | 3105 | 408 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6XJH | 22210 | 2023-11-14 | 2020-06-23 | 3.6 | 2.83 | — | 3.6 | 0.019 | 1.64 | 0.0 | 0.09 | 11.22 | 0.01 | 2.173 | 3.03 | 0.48 | 1.5 | 98.5 | 0.0 | 1.10 | 0.66 | 0.74 | 1.98 | 3.7 | 0.003 | 0.71 | 0.0 | 0.05 | 16.12 | 0.00 | 1.926 | 13.34 | 0.36 | 2.4 | 97.6 | 0.0 | 0.82 | 1.65 | 0.67 | 0.76 | 1.58 | 7596 | 940 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 7NLL | 12465 | 2023-11-14 | 2021-02-22 | 2.89 | 3.42 | — | 3.2 | 0.003 | 0.55 | 0.0 | 0.26 | 10.85 | 0.00 | 2.255 | 7.02 | 0.00 | 0.6 | 99.4 | 0.0 | 1.34 | 0.80 | 0.82 | 3.17 | 3.1 | 0.003 | 0.65 | 0.0 | 0.04 | 14.88 | 0.00 | 2.220 | 8.36 | 3.07 | 2.3 | 97.5 | 0.2 | -0.33 | 1.58 | 0.82 | 0.87 | 3.19 | 5056 | 656 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 7Vo0 | 32048 | 2023-11-14 | 2021-10-12 | 3.4 | 3.66 | 3.41 | 3.5 | 0.004 | 0.57 | 0.0 | 0.04 | 21.10 | 0.00 | 1.938 | 7.44 | 0.17 | 1.8 | 98.2 | 0.0 | 0.39 | 0.73 | 0.66 | 1.10 | 3.6 | 0.003 | 0.55 | 0.0 | 0.03 | 22.81 | 0.00 | 1.975 | 10.81 | 0.34 | 1.9 | 98.1 | 0.0 | 1.47 | 1.39 | 0.83 | 0.82 | 1.47 | 7661 | 786 | 14 | 86 | 18 | 0 | 0 | logfile |
✔ | 7RYC | 24733 | 2023-11-14 | 2021-08-24 | 2.9 | 2.34 | — | 3.0 | 0.013 | 0.86 | 0.0 | 0.05 | 13.76 | 0.00 | 2.198 | 5.49 | 0.38 | 4.9 | 95.1 | 0.0 | -2.98 | 0.80 | 0.77 | 2.64 | 3.0 | 0.003 | 0.62 | 0.0 | 0.04 | 15.77 | 0.00 | 2.204 | 4.11 | 2.50 | 2.6 | 97.4 | 0.0 | -0.03 | 0.47 | 0.81 | 0.80 | 2.43 | 8277 | 1125 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 8EAo | 27792 | 2023-11-18 | 2022-08-29 | 3.2 | 4.04 | 3.15 | 20.0 | 0.003 | 0.60 | 0.0 | 0.05 | 14.09 | 0.00 | 2.197 | 10.56 | 0.10 | 3.6 | 96.4 | 0.0 | 1.03 | 0.18 | 0.04 | -0.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71628 | 8964 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RR0 | 24649 | 2023-11-13 | 2021-08-08 | 3.12 | 3.40 | — | 3.4 | 0.004 | 0.97 | 0.0 | 0.06 | 12.20 | 0.01 | 2.327 | 2.79 | 0.00 | 1.4 | 98.6 | 0.0 | 0.12 | 0.75 | 0.77 | 2.73 | 3.4 | 0.003 | 0.73 | 0.0 | 0.04 | 16.03 | 0.00 | 2.243 | 12.40 | 0.28 | 2.9 | 97.1 | 0.0 | 0.12 | 1.25 | 0.76 | 0.80 | 2.78 | 3297 | 422 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7VV4 | 32137 | 2023-11-13 | 2021-11-04 | 2.97 | 3.66 | — | 3.7 | 0.007 | 1.20 | 2.0 | 0.09 | 14.57 | 0.01 | 1.600 | 15.98 | 3.75 | 4.2 | 95.8 | 0.0 | -0.53 | 0.64 | 0.78 | 2.05 | 3.7 | 0.003 | 0.76 | 0.0 | 0.04 | 17.20 | 0.00 | 2.114 | 10.81 | 2.50 | 2.3 | 97.4 | 0.4 | 2.12 | 0.55 | 0.58 | 0.76 | 0.88 | 2181 | 269 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7SRQ | 25401 | 2023-11-13 | 2021-11-08 | 2.7 | 2.17 | — | 1.9 | 0.008 | 0.80 | 0.0 | 0.05 | 13.54 | 0.01 | 2.296 | 8.67 | 1.50 | 2.8 | 97.2 | 0.0 | 0.29 | 0.70 | 0.72 | 4.55 | 2.7 | 0.004 | 0.76 | 0.0 | 0.04 | 15.44 | 0.00 | 2.264 | 8.93 | 3.50 | 3.2 | 96.8 | 0.0 | 0.20 | 0.48 | 0.72 | 0.77 | 3.78 | 1960 | 254 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 8DC2 | 27320 | 2023-11-14 | 2022-06-15 | 2.99 | 2.48 | 3.03 | 3.1 | 0.003 | 0.54 | 0.0 | 0.04 | 17.64 | 0.00 | 2.216 | 11.65 | 0.16 | 3.0 | 97.0 | 0.0 | 1.17 | 0.82 | 0.83 | 2.49 | 3.0 | 0.005 | 0.71 | 0.0 | 0.04 | 19.50 | 0.00 | 2.095 | 13.77 | 2.74 | 4.8 | 95.2 | 0.0 | 0.52 | 0.40 | 0.84 | 0.85 | 3.05 | 7296 | 673 | 4 | 87 | 0 | 0 | 0 | logfile |
✔ | 7C8K | 30306 | 2023-11-14 | 2020-06-02 | 3.2 | 3.18 | — | 3.1 | 0.002 | 0.51 | 0.0 | 0.05 | 13.62 | 0.00 | 2.001 | 4.88 | 0.00 | 3.2 | 96.8 | 0.0 | -1.52 | 0.82 | 0.78 | 2.09 | 3.2 | 0.002 | 0.53 | 0.0 | 0.04 | 15.61 | 0.00 | 2.224 | 7.42 | 0.20 | 3.4 | 96.6 | 0.0 | 1.64 | 1.13 | 0.85 | 0.83 | 2.87 | 4853 | 596 | 3 | 0 | 6 | 0 | 0 | logfile |
✔ | 7NK2 | 12429 | 2023-11-20 | 2021-02-17 | 4.84 | 4.93 | — | 4.8 | 0.004 | 0.73 | 2.0 | 0.05 | 13.61 | 0.01 | 1.907 | 8.81 | 0.32 | 4.3 | 95.7 | 0.0 | -0.71 | 0.61 | 0.43 | — | 4.8 | 0.003 | 0.66 | 0.0 | 0.04 | 13.83 | 0.00 | 1.914 | 17.59 | 0.00 | 5.7 | 94.3 | 0.0 | -0.91 | 4.61 | 0.73 | 0.68 | — | 28776 | 1794 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 7VVM | 32144 | 2023-11-14 | 2021-11-06 | 3.2 | 2.40 | 3.19 | 3.2 | 0.015 | 1.76 | 0.0 | 0.09 | 13.51 | 0.00 | 2.200 | 6.43 | 0.60 | 5.2 | 94.8 | 0.0 | -1.17 | 0.60 | 0.71 | 2.55 | 3.2 | 0.003 | 0.58 | 0.0 | 0.04 | 16.16 | 0.00 | 2.118 | 9.89 | 0.84 | 3.6 | 96.4 | 0.0 | 0.53 | 0.62 | 0.66 | 0.73 | 2.33 | 8507 | 1133 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NKA | 12435 | 2023-11-20 | 2021-02-17 | 4.07 | 4.20 | — | 4.1 | 0.004 | 0.67 | 0.0 | 0.04 | 13.49 | 0.00 | 1.908 | 8.61 | 0.00 | 4.0 | 96.0 | 0.0 | -0.66 | 0.63 | 0.51 | — | 4.1 | 0.003 | 0.65 | 0.0 | 0.04 | 14.40 | 0.00 | 1.868 | 13.76 | 0.00 | 4.4 | 95.6 | 0.0 | -0.52 | 1.92 | 0.74 | 0.69 | — | 28778 | 1796 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 7CTF | 30463 | 2023-11-16 | 2020-08-18 | 4.8 | 4.92 | — | 4.8 | 0.009 | 1.36 | 0.0 | 0.06 | 18.70 | 0.01 | 2.264 | 6.48 | 8.84 | 6.9 | 93.1 | 0.1 | -4.50 | 0.77 | 0.73 | — | 4.7 | 0.004 | 0.82 | 0.0 | 0.04 | 14.56 | 0.00 | 2.064 | 19.33 | 0.06 | 7.3 | 92.7 | 0.0 | -1.22 | 3.96 | 0.79 | 0.79 | — | 14504 | 1775 | 7 | 0 | 2 | 0 | 0 | logfile |
✔ | 6UJA | 20794 | 2023-11-14 | 2019-10-02 | 3.3 | 3.49 | — | 3.4 | 0.014 | 1.49 | 0.0 | 0.09 | 10.46 | 0.01 | 1.802 | 0.19 | 0.14 | 2.7 | 97.1 | 0.2 | 0.28 | 0.82 | 0.82 | 3.35 | 3.4 | 0.004 | 0.65 | 0.0 | 0.05 | 13.99 | 0.00 | 2.008 | 6.45 | 0.55 | 3.4 | 96.6 | 0.0 | 0.13 | 1.49 | 0.83 | 0.85 | 3.06 | 8224 | 1128 | 10 | 0 | 23 | 0 | 0 | logfile |
✔ | 6W5C | 21541 | 2023-11-15 | 2020-03-13 | 2.9 | 2.92 | — | 3.2 | 0.004 | 0.64 | 0.0 | 0.04 | 16.12 | 0.00 | 2.103 | 8.53 | 0.85 | 7.4 | 92.4 | 0.2 | -1.44 | 0.84 | 0.82 | 4.35 | 3.2 | 0.003 | 0.56 | 0.0 | 0.04 | 18.00 | 0.00 | 2.099 | 10.51 | 1.45 | 7.0 | 93.0 | 0.0 | -0.09 | 2.18 | 0.83 | 0.82 | 3.41 | 10183 | 1023 | 5 | 105 | 0 | 0 | 0 | logfile |
✔ | 7BZX | 30262 | 2023-11-13 | 2020-04-28 | 4.0 | 4.19 | — | 3.2 | 0.019 | 2.22 | 9.0 | 0.12 | 8.56 | 0.01 | 2.485 | 2.40 | 0.00 | 6.6 | 92.1 | 1.3 | -2.90 | 0.47 | 0.25 | — | 2.8 | 0.006 | 1.18 | 0.0 | 0.05 | 9.20 | 0.01 | 2.035 | 27.91 | 0.00 | 24.1 | 75.8 | 0.1 | -4.93 | 2.97 | 0.75 | 0.58 | — | 5652 | 1154 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SF8 | 25077 | 2023-11-14 | 2021-10-03 | 2.7 | 2.25 | — | 2.1 | 0.005 | 0.74 | 0.0 | 0.05 | 13.03 | 0.00 | 2.270 | 4.24 | 0.14 | 4.7 | 95.3 | 0.0 | 0.40 | 0.80 | 0.80 | 3.25 | 2.1 | 0.004 | 0.58 | 0.0 | 0.04 | 15.86 | 0.00 | 2.153 | 4.39 | 2.09 | 4.5 | 95.5 | 0.0 | 0.95 | 1.00 | 0.82 | 0.84 | 3.40 | 6661 | 860 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7US9 | 26729 | 2023-11-13 | 2022-04-23 | 3.8 | 3.84 | 3.64 | 3.9 | 0.015 | 1.58 | 0.0 | 0.11 | 7.31 | 0.01 | 2.489 | 3.45 | 0.00 | 2.3 | 97.7 | 0.0 | 1.07 | 0.59 | 0.74 | 4.43 | 3.8 | 0.003 | 0.73 | 0.0 | 0.07 | 13.17 | 0.01 | 2.282 | 8.38 | 0.00 | 4.7 | 95.3 | 0.0 | 0.27 | 1.46 | 0.60 | 0.77 | 2.97 | 1127 | 145 | 3 | 0 | 4 | 0 | 0 | logfile |