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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5A6E | 3062 | 2023-11-15 | 2015-06-25 | 4.5 | 6.76 | — | 5.1 | 0.010 | 3.73 | 0.0 | 0.05 | 15.55 | 0.01 | 2.112 | 8.77 | 3.19 | 11.1 | 88.8 | 0.2 | -5.00 | 0.36 | 0.56 | — | 4.8 | 0.004 | 0.60 | 0.0 | 0.03 | 10.41 | 0.00 | 2.080 | 11.78 | 0.00 | 5.3 | 94.7 | 0.0 | -0.72 | 1.45 | 0.40 | 0.73 | — | 11093 | 634 | 4 | 0 | 182 | 0 | 5102 | logfile |
✔ | 5A6F | 3063 | 2023-11-14 | 2015-06-25 | 4.2 | 5.75 | — | 5.0 | 0.012 | 1.50 | 0.0 | 0.05 | 12.32 | 0.01 | 2.112 | 10.08 | 3.74 | 12.2 | 87.6 | 0.2 | -4.94 | 0.56 | 0.74 | — | 4.9 | 0.002 | 0.56 | 0.0 | 0.04 | 10.89 | 0.00 | 2.048 | 8.96 | 0.00 | 4.7 | 95.3 | 0.0 | -0.78 | 0.97 | 0.57 | 0.75 | — | 8881 | 540 | 2 | 0 | 43 | 0 | 4330 | logfile |
✘ | 5A7U | 3079 | 2023-11-13 | 2015-07-10 | 4.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 455 | 27 | 1 | 0 | 1 | 0 | 231 | logfile |
✔ | 5A8L | 3099 | 2023-11-15 | 2015-07-16 | 3.8 | 3.60 | — | 3.5 | 0.004 | 0.67 | 0.0 | 0.02 | 12.36 | 0.00 | 1.435 | 8.96 | 0.95 | 10.3 | 86.8 | 2.9 | -2.06 | 0.18 | 0.43 | 0.47 | 3.5 | 0.007 | 1.04 | 0.0 | 0.05 | 18.05 | 0.01 | 1.970 | 24.69 | 1.52 | 12.2 | 86.5 | 1.3 | -3.20 | 1.88 | 0.23 | 0.63 | 0.56 | 12264 | 624 | 9 | 347 | 0 | 0 | 0 | logfile |
✘ | 5ADY | 3133 | 2023-11-21 | 2015-08-25 | 4.5 | 4.75 | — | 4.5 | 0.011 | 1.28 | 0.0 | 0.06 | 18.75 | 0.01 | 1.391 | 57.89 | 0.21 | 11.7 | 81.7 | 6.7 | -3.35 | 0.72 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 97364 | 4197 | 35 | 3020 | 2 | 0 | 0 | logfile |
✔ | 5AEY | 2850 | 2023-11-15 | 2015-01-12 | 4.3 | 4.01 | — | 4.0 | 0.011 | 1.71 | 35.0 | 0.11 | 21.88 | 0.01 | 2.197 | 7.01 | 18.45 | 8.7 | 88.5 | 2.8 | -3.27 | 0.64 | 0.81 | — | 3.9 | 0.003 | 0.75 | 0.0 | 0.04 | 15.74 | 0.00 | 2.150 | 14.50 | 0.00 | 9.5 | 90.2 | 0.3 | -1.36 | 2.82 | 0.63 | 0.76 | — | 12675 | 1590 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 5AJ3 | 2913 | 2023-11-16 | 2015-02-20 | 3.6 | 3.73 | — | 3.7 | 0.018 | 1.28 | 0.0 | 0.05 | 18.85 | 0.07 | 1.844 | 24.00 | 10.71 | 3.9 | 96.0 | 0.1 | -3.65 | 0.86 | 0.86 | 2.03 | 3.6 | 0.008 | 1.48 | 0.0 | 0.05 | 19.33 | 0.02 | 1.708 | 19.00 | 0.81 | 5.3 | 94.6 | 0.1 | -0.10 | 1.63 | 0.84 | 0.82 | 1.62 | 66363 | 4665 | 44 | 1102 | 1006 | 118 | 0 | logfile |
✘ | 5BK4 | 9400 | 2023-11-15 | 2017-09-12 | 3.9 | 4.14 | — | 4.1 | 0.008 | 1.24 | 0.0 | 0.06 | 14.44 | 0.01 | 2.234 | 5.12 | 1.24 | 12.2 | 87.6 | 0.2 | -4.81 | 0.81 | 0.79 | 2.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62482 | 7636 | 22 | 120 | 8 | 0 | 0 | logfile |
✔ | 5BKF | 9403 | 2023-11-15 | 2021-03-19 | 3.6 | 3.87 | — | 4.0 | 0.004 | 0.54 | 0.0 | 0.04 | 13.37 | 0.00 | 2.015 | 7.17 | 0.35 | 6.2 | 93.8 | 0.0 | -3.64 | 0.66 | 0.81 | 2.57 | 3.9 | 0.003 | 0.71 | 0.0 | 0.04 | 16.00 | 0.00 | 2.234 | 11.94 | 0.42 | 3.6 | 96.4 | 0.0 | -0.31 | 1.34 | 0.66 | 0.83 | 2.29 | 13470 | 1694 | 10 | 0 | 9 | 0 | 0 | logfile |
✔ | 5BKG | 9404 | 2023-11-15 | 2021-03-19 | 3.8 | 3.93 | — | 4.0 | 0.004 | 0.58 | 0.0 | 0.04 | 12.34 | 0.00 | 2.044 | 8.32 | 0.21 | 6.2 | 93.8 | 0.0 | -3.60 | 0.68 | 0.82 | 2.85 | 4.0 | 0.003 | 0.70 | 0.0 | 0.05 | 15.62 | 0.00 | 2.210 | 11.60 | 0.27 | 4.4 | 95.6 | 0.0 | -0.58 | 0.64 | 0.70 | 0.84 | 2.09 | 13509 | 1689 | 10 | 0 | 9 | 0 | 0 | logfile |
✔ | 5BKi | 9405 | 2023-11-16 | 2021-03-19 | 3.1 | 3.21 | — | 3.2 | 0.010 | 1.04 | 0.0 | 0.06 | 15.27 | 0.01 | 2.252 | 4.46 | 0.44 | 5.4 | 94.6 | 0.0 | -5.10 | 0.70 | 0.85 | 3.65 | 3.2 | 0.002 | 0.53 | 0.0 | 0.05 | 16.01 | 0.00 | 2.138 | 5.90 | 0.05 | 3.6 | 96.4 | 0.0 | 0.05 | 1.61 | 0.65 | 0.85 | 2.70 | 16933 | 2156 | 20 | 0 | 21 | 4 | 0 | logfile |
✔ | 5BKJ | 9406 | 2023-11-16 | 2021-03-19 | 3.5 | 3.68 | — | 3.7 | 0.006 | 0.81 | 0.0 | 0.06 | 14.99 | 0.00 | 2.251 | 5.00 | 1.09 | 4.1 | 95.9 | 0.0 | -3.93 | 0.69 | 0.84 | 2.13 | 3.7 | 0.002 | 0.52 | 0.0 | 0.05 | 16.34 | 0.00 | 2.242 | 7.50 | 0.33 | 2.0 | 98.0 | 0.0 | 0.25 | 1.63 | 0.69 | 0.83 | 1.97 | 16939 | 2156 | 16 | 0 | 7 | 4 | 0 | logfile |
✔ | 5BKK | 9407 | 2023-11-16 | 2021-03-19 | 3.5 | 3.17 | — | 3.5 | 0.004 | 0.72 | 0.0 | 0.05 | 14.74 | 0.00 | 2.242 | 5.39 | 0.11 | 3.5 | 96.5 | 0.0 | -4.88 | 0.68 | 0.82 | 2.52 | 3.5 | 0.003 | 0.58 | 0.0 | 0.05 | 16.41 | 0.00 | 2.126 | 8.73 | 0.33 | 3.4 | 96.6 | 0.0 | -0.83 | 0.52 | 0.63 | 0.81 | 2.06 | 16831 | 2156 | 11 | 0 | 6 | 0 | 0 | logfile |
✔ | 5FLM | 3218 | 2023-11-21 | 2015-10-26 | 3.4 | 3.52 | — | 3.5 | 0.004 | 0.74 | 0.0 | 0.05 | 11.28 | 0.00 | 2.034 | 14.71 | 0.00 | 5.1 | 94.9 | 0.0 | -2.61 | 0.51 | 0.66 | 2.61 | 3.5 | 0.004 | 0.65 | 0.0 | 0.04 | 16.22 | 0.00 | 1.986 | 9.73 | 0.35 | 5.2 | 94.7 | 0.1 | 0.11 | 1.54 | 0.68 | 0.84 | 1.74 | 32712 | 3896 | 21 | 80 | 9 | 0 | 0 | logfile |
✔ | 5FLU | 3222 | 2023-11-16 | 2015-10-28 | 3.8 | 3.50 | — | 3.4 | 0.009 | 0.93 | 0.0 | 0.05 | 12.31 | 0.01 | 2.213 | 3.04 | 0.00 | 8.7 | 90.1 | 1.2 | -2.36 | 0.72 | 0.64 | 0.95 | 3.2 | 0.003 | 0.70 | 0.0 | 0.04 | 15.70 | 0.00 | 2.142 | 12.31 | 0.37 | 4.7 | 95.3 | 0.0 | -0.10 | 1.37 | 0.77 | 0.78 | 1.99 | 15132 | 2119 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 5FN1 | 3236 | 2023-11-14 | 2015-11-10 | 3.9 | 4.00 | — | 4.7 | 0.009 | 1.18 | 0.0 | 0.07 | 11.47 | 0.00 | 0.877 | 53.81 | 0.00 | 8.8 | 88.4 | 2.8 | -3.37 | 0.24 | 0.29 | 0.57 | 3.9 | 0.005 | 0.87 | 0.0 | 0.04 | 16.79 | 0.01 | 1.856 | 24.11 | 1.08 | 13.3 | 85.7 | 1.0 | -1.33 | 2.15 | 0.41 | 0.75 | 0.99 | 61308 | 3906 | 36 | 90 | 0 | 0 | 30078 | logfile |
✔ | 5FN2 | 3237 | 2023-11-15 | 2015-11-10 | 4.2 | 4.23 | — | 4.2 | 0.009 | 1.73 | 23.0 | 0.10 | 17.98 | 0.01 | 1.890 | 19.04 | 11.69 | 11.9 | 84.1 | 3.9 | -1.77 | 0.48 | 0.55 | — | 4.2 | 0.005 | 0.92 | 0.0 | 0.05 | 14.42 | 0.01 | 2.145 | 22.58 | 0.00 | 9.5 | 89.6 | 0.8 | -1.02 | 1.11 | 0.59 | 0.73 | — | 10276 | 1309 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5FN3 | 3238 | 2023-11-15 | 2015-11-10 | 4.1 | 4.53 | — | 4.1 | 0.011 | 1.81 | 26.0 | 0.10 | 18.64 | 0.01 | 1.021 | 20.42 | 11.34 | 10.7 | 85.3 | 4.0 | -1.54 | 0.66 | 0.60 | — | 4.1 | 0.004 | 0.83 | 0.0 | 0.04 | 13.92 | 0.01 | 2.063 | 18.67 | 0.00 | 8.4 | 90.6 | 1.0 | -0.49 | 2.22 | 0.71 | 0.79 | — | 10291 | 1318 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 5FN4 | 3239 | 2023-11-14 | 2015-11-10 | 4.0 | 4.24 | — | 4.2 | 0.010 | 1.71 | 17.0 | 0.10 | 18.07 | 0.01 | 2.131 | 10.17 | 10.51 | 12.0 | 84.8 | 3.2 | -1.44 | 0.61 | 0.55 | — | 4.1 | 0.004 | 0.89 | 0.0 | 0.05 | 17.23 | 0.01 | 2.157 | 20.48 | 0.57 | 7.4 | 91.9 | 0.6 | -0.37 | 1.73 | 0.69 | 0.79 | — | 9776 | 1250 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 5FN5 | 3240 | 2023-11-14 | 2015-11-10 | 4.3 | 4.62 | — | 4.3 | 0.012 | 1.85 | 28.0 | 0.11 | 18.82 | 0.01 | 2.074 | 13.59 | 14.00 | 11.4 | 84.3 | 4.3 | -1.91 | 0.65 | 0.62 | — | 4.3 | 0.003 | 0.86 | 0.0 | 0.04 | 13.72 | 0.01 | 2.178 | 20.91 | 0.10 | 8.6 | 90.7 | 0.7 | -0.88 | 1.04 | 0.69 | 0.79 | — | 9645 | 1227 | 4 | 0 | 0 | 0 | 0 | logfile |