Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5A6E	3062	2023-11-15	2015-06-25	4.5	6.76	—	5.1	0.010	3.73	0.0	0.05	15.55	0.01	2.112	8.77	3.19	11.1	88.8	0.2	-5.00	0.36	0.56	—	4.8	0.004	0.60	0.0	0.03	10.41	0.00	2.080	11.78	0.00	5.3	94.7	0.0	-0.72	1.45	0.40	0.73	—	11093	634	4	0	182	0	5102	logfile
✔	5A6F	3063	2023-11-14	2015-06-25	4.2	5.75	—	5.0	0.012	1.50	0.0	0.05	12.32	0.01	2.112	10.08	3.74	12.2	87.6	0.2	-4.94	0.56	0.74	—	4.9	0.002	0.56	0.0	0.04	10.89	0.00	2.048	8.96	0.00	4.7	95.3	0.0	-0.78	0.97	0.57	0.75	—	8881	540	2	0	43	0	4330	logfile
✘	5A7U	3079	2023-11-13	2015-07-10	4.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	1	0	1	0	231	logfile
✔	5A8L	3099	2023-11-15	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	12.36	0.00	1.435	8.96	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.007	1.04	0.0	0.05	18.05	0.01	1.970	24.69	1.52	12.2	86.5	1.3	-3.20	1.88	0.23	0.63	0.56	12264	624	9	347	0	0	0	logfile
✘	5ADY	3133	2023-11-21	2015-08-25	4.5	4.75	—	4.5	0.011	1.28	0.0	0.06	18.75	0.01	1.391	57.89	0.21	11.7	81.7	6.7	-3.35	0.72	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	97364	4197	35	3020	2	0	0	logfile
✔	5AEY	2850	2023-11-15	2015-01-12	4.3	4.01	—	4.0	0.011	1.71	35.0	0.11	21.88	0.01	2.197	7.01	18.45	8.7	88.5	2.8	-3.27	0.64	0.81	—	3.9	0.003	0.75	0.0	0.04	15.74	0.00	2.150	14.50	0.00	9.5	90.2	0.3	-1.36	2.82	0.63	0.76	—	12675	1590	10	0	5	0	0	logfile
✔	5AJ3	2913	2023-11-16	2015-02-20	3.6	3.73	—	3.7	0.018	1.28	0.0	0.05	18.85	0.07	1.844	24.00	10.71	3.9	96.0	0.1	-3.65	0.86	0.86	2.03	3.6	0.008	1.48	0.0	0.05	19.33	0.02	1.708	19.00	0.81	5.3	94.6	0.1	-0.10	1.63	0.84	0.82	1.62	66363	4665	44	1102	1006	118	0	logfile
✘	5BK4	9400	2023-11-15	2017-09-12	3.9	4.14	—	4.1	0.008	1.24	0.0	0.06	14.44	0.01	2.234	5.12	1.24	12.2	87.6	0.2	-4.81	0.81	0.79	2.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62482	7636	22	120	8	0	0	logfile
✔	5BKF	9403	2023-11-15	2021-03-19	3.6	3.87	—	4.0	0.004	0.54	0.0	0.04	13.37	0.00	2.015	7.17	0.35	6.2	93.8	0.0	-3.64	0.66	0.81	2.57	3.9	0.003	0.71	0.0	0.04	16.00	0.00	2.234	11.94	0.42	3.6	96.4	0.0	-0.31	1.34	0.66	0.83	2.29	13470	1694	10	0	9	0	0	logfile
✔	5BKG	9404	2023-11-15	2021-03-19	3.8	3.93	—	4.0	0.004	0.58	0.0	0.04	12.34	0.00	2.044	8.32	0.21	6.2	93.8	0.0	-3.60	0.68	0.82	2.85	4.0	0.003	0.70	0.0	0.05	15.62	0.00	2.210	11.60	0.27	4.4	95.6	0.0	-0.58	0.64	0.70	0.84	2.09	13509	1689	10	0	9	0	0	logfile
✔	5BKi	9405	2023-11-16	2021-03-19	3.1	3.21	—	3.2	0.010	1.04	0.0	0.06	15.27	0.01	2.252	4.46	0.44	5.4	94.6	0.0	-5.10	0.70	0.85	3.65	3.2	0.002	0.53	0.0	0.05	16.01	0.00	2.138	5.90	0.05	3.6	96.4	0.0	0.05	1.61	0.65	0.85	2.70	16933	2156	20	0	21	4	0	logfile
✔	5BKJ	9406	2023-11-16	2021-03-19	3.5	3.68	—	3.7	0.006	0.81	0.0	0.06	14.99	0.00	2.251	5.00	1.09	4.1	95.9	0.0	-3.93	0.69	0.84	2.13	3.7	0.002	0.52	0.0	0.05	16.34	0.00	2.242	7.50	0.33	2.0	98.0	0.0	0.25	1.63	0.69	0.83	1.97	16939	2156	16	0	7	4	0	logfile
✔	5BKK	9407	2023-11-16	2021-03-19	3.5	3.17	—	3.5	0.004	0.72	0.0	0.05	14.74	0.00	2.242	5.39	0.11	3.5	96.5	0.0	-4.88	0.68	0.82	2.52	3.5	0.003	0.58	0.0	0.05	16.41	0.00	2.126	8.73	0.33	3.4	96.6	0.0	-0.83	0.52	0.63	0.81	2.06	16831	2156	11	0	6	0	0	logfile
✔	5FLM	3218	2023-11-21	2015-10-26	3.4	3.52	—	3.5	0.004	0.74	0.0	0.05	11.28	0.00	2.034	14.71	0.00	5.1	94.9	0.0	-2.61	0.51	0.66	2.61	3.5	0.004	0.65	0.0	0.04	16.22	0.00	1.986	9.73	0.35	5.2	94.7	0.1	0.11	1.54	0.68	0.84	1.74	32712	3896	21	80	9	0	0	logfile
✔	5FLU	3222	2023-11-16	2015-10-28	3.8	3.50	—	3.4	0.009	0.93	0.0	0.05	12.31	0.01	2.213	3.04	0.00	8.7	90.1	1.2	-2.36	0.72	0.64	0.95	3.2	0.003	0.70	0.0	0.04	15.70	0.00	2.142	12.31	0.37	4.7	95.3	0.0	-0.10	1.37	0.77	0.78	1.99	15132	2119	13	0	0	0	0	logfile
✔	5FN1	3236	2023-11-14	2015-11-10	3.9	4.00	—	4.7	0.009	1.18	0.0	0.07	11.47	0.00	0.877	53.81	0.00	8.8	88.4	2.8	-3.37	0.24	0.29	0.57	3.9	0.005	0.87	0.0	0.04	16.79	0.01	1.856	24.11	1.08	13.3	85.7	1.0	-1.33	2.15	0.41	0.75	0.99	61308	3906	36	90	0	0	30078	logfile
✔	5FN2	3237	2023-11-15	2015-11-10	4.2	4.23	—	4.2	0.009	1.73	23.0	0.10	17.98	0.01	1.890	19.04	11.69	11.9	84.1	3.9	-1.77	0.48	0.55	—	4.2	0.005	0.92	0.0	0.05	14.42	0.01	2.145	22.58	0.00	9.5	89.6	0.8	-1.02	1.11	0.59	0.73	—	10276	1309	4	0	0	0	0	logfile
✔	5FN3	3238	2023-11-15	2015-11-10	4.1	4.53	—	4.1	0.011	1.81	26.0	0.10	18.64	0.01	1.021	20.42	11.34	10.7	85.3	4.0	-1.54	0.66	0.60	—	4.1	0.004	0.83	0.0	0.04	13.92	0.01	2.063	18.67	0.00	8.4	90.6	1.0	-0.49	2.22	0.71	0.79	—	10291	1318	5	0	0	0	0	logfile
✔	5FN4	3239	2023-11-14	2015-11-10	4.0	4.24	—	4.2	0.010	1.71	17.0	0.10	18.07	0.01	2.131	10.17	10.51	12.0	84.8	3.2	-1.44	0.61	0.55	—	4.1	0.004	0.89	0.0	0.05	17.23	0.01	2.157	20.48	0.57	7.4	91.9	0.6	-0.37	1.73	0.69	0.79	—	9776	1250	5	0	0	0	0	logfile
✔	5FN5	3240	2023-11-14	2015-11-10	4.3	4.62	—	4.3	0.012	1.85	28.0	0.11	18.82	0.01	2.074	13.59	14.00	11.4	84.3	4.3	-1.91	0.65	0.62	—	4.3	0.003	0.86	0.0	0.04	13.72	0.01	2.178	20.91	0.10	8.6	90.7	0.7	-0.88	1.04	0.69	0.79	—	9645	1227	4	0	0	0	0	logfile

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