Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5G06	3366	2023-08-19	2016-03-17	4.2	4.89	—	4.7	0.036	3.53	246.0	0.21	17.03	0.03	1.189	3.05	3.01	5.9	92.3	1.9	-2.39	0.66	0.46	—	4.7	0.003	0.75	0.0	0.04	14.36	0.00	2.082	17.81	0.00	4.2	95.6	0.1	-0.48	1.80	0.88	0.79	—	26794	3420	11	0	0	0	0	logfile
✔	5G2X	3331	2023-08-15	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.005	0.87	0.0	0.04	19.17	0.01	1.949	36.81	0.45	21.6	77.1	1.3	-5.19	1.94	0.80	0.66	0.50	19072	487	3	704	0	0	0	logfile
✔	5G2Y	3332	2023-08-13	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	11.90	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.02	0.0	0.05	23.60	0.01	1.933	73.59	0.00	0.0	0.0	0.0	—	2.96	0.89	0.78	—	13494	0	1	630	0	0	0	logfile
✔	5G5L	3439	2023-08-24	2016-05-26	4.8	5.08	—	4.8	0.010	1.38	14.0	0.09	16.60	0.01	0.675	31.05	7.76	6.0	92.2	1.8	-2.38	0.81	0.71	—	4.8	0.004	0.74	0.0	0.04	13.50	0.00	2.003	19.15	0.02	4.1	95.8	0.1	0.30	3.24	0.86	0.83	—	37349	4686	20	0	7	0	0	logfile
✔	5GAD	8000	2023-08-24	2015-11-24	3.7	4.17	—	3.9	0.009	1.11	1.0	0.05	15.93	0.01	1.737	9.19	10.34	3.5	96.5	0.1	-3.19	0.77	0.79	1.52	3.9	0.008	0.70	0.0	0.04	15.17	0.01	1.037	20.35	0.82	4.2	95.7	0.1	-0.22	2.14	0.81	0.88	1.33	98006	4087	49	3049	507	0	0	logfile
✔	5GAE	8001	2023-08-23	2015-11-25	3.33	3.45	—	3.3	0.007	0.94	0.0	0.04	14.78	0.00	1.884	5.65	5.36	3.0	96.9	0.1	-2.76	0.79	0.88	2.24	3.3	0.008	0.75	0.0	0.04	15.29	0.01	1.725	13.21	0.86	4.4	95.5	0.1	-0.31	2.08	0.79	0.89	2.33	95192	3886	41	3007	349	0	0	logfile
✔	5GAF	8002	2023-08-23	2015-11-25	4.3	4.42	—	4.3	0.007	1.09	1.0	0.05	15.95	0.01	1.266	8.87	11.04	3.5	96.4	0.1	-3.28	0.63	0.64	—	4.3	0.005	0.71	0.0	0.04	14.99	0.01	1.044	21.32	0.03	5.4	94.5	0.2	-0.97	1.35	0.71	0.84	—	96182	3889	47	3049	452	0	0	logfile
✔	5GAG	8003	2023-08-23	2015-11-26	3.8	3.95	—	3.8	0.007	1.04	1.0	0.05	15.71	0.00	1.789	8.16	9.03	3.0	96.9	0.1	-3.35	0.79	0.90	1.98	3.8	0.006	0.73	0.0	0.04	15.46	0.01	0.954	17.90	1.07	4.6	95.2	0.1	-0.85	0.69	0.78	0.88	2.01	94030	3598	46	3049	473	0	0	logfile
✔	5GAH	8004	2023-08-23	2015-11-26	3.8	3.97	—	3.9	0.008	1.10	0.0	0.05	15.97	0.01	1.737	8.30	11.31	3.3	96.7	0.1	-3.33	0.73	0.85	1.12	3.9	0.004	0.62	0.0	0.03	15.25	0.00	1.170	14.30	0.97	3.9	96.0	0.1	-0.54	1.16	0.73	0.87	1.46	94027	3595	46	3049	473	0	0	logfile
✔	5GAK	3227	2023-08-17	2015-12-09	3.88	4.13	—	19.0	0.006	0.94	0.0	0.06	20.85	0.01	0.816	23.89	0.26	9.2	90.2	0.7	-3.81	0.21	0.02	0.28	3.9	0.003	0.72	0.0	0.04	18.78	0.00	2.007	19.48	0.38	8.0	91.6	0.4	-2.15	1.90	0.32	0.21	0.08	128975	6434	50	3597	234	0	0	logfile
✔	5GAM	8011	2023-08-15	2015-12-15	3.7	4.03	—	3.9	0.008	1.49	11.0	0.10	19.79	0.01	1.976	11.79	6.60	10.0	88.2	1.8	-2.90	0.72	0.57	1.24	3.9	0.004	0.87	0.0	0.05	18.86	0.00	2.066	18.19	0.55	6.9	93.0	0.2	-1.07	1.70	0.80	0.79	1.15	19123	2002	13	166	19	0	0	logfile
✔	5GAP	8014	2023-08-21	2015-12-15	3.6	3.65	—	3.6	0.008	1.51	26.0	0.09	17.39	0.01	2.143	7.19	4.23	8.8	89.7	1.5	-1.15	0.48	0.48	1.61	3.6	0.004	0.75	0.0	0.04	17.58	0.00	2.059	14.66	0.59	5.3	94.6	0.1	0.54	2.22	0.66	0.78	1.13	31576	3503	12	143	82	0	0	logfile
✘	5GAQ	8015	2023-08-16	2016-01-05	3.1	3.36	—	3.2	0.006	1.02	0.0	0.08	11.97	0.00	2.289	1.94	0.80	7.3	92.7	0.0	-3.69	0.56	0.50	3.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20574	2592	9	0	0	0	0	logfile
✘	5GJQ	9511	2023-08-24	2016-07-01	4.35	4.02	—	3.8	0.016	1.83	29.0	0.09	16.70	0.01	1.073	47.82	10.02	11.3	84.5	4.2	-4.17	0.79	0.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	98461	13520	54	0	6	0	0	logfile
✘	5GJR	9512	2023-08-26	2016-07-01	3.5	3.65	—	3.5	0.013	1.53	38.0	0.08	16.77	0.01	1.114	63.72	11.56	13.2	81.8	5.0	-4.66	0.71	0.77	1.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	142753	19945	76	0	12	0	0	logfile
✘	5GJV	9513	2023-08-17	2016-07-02	3.6	3.69	—	3.7	0.013	1.62	32.0	0.08	14.85	0.01	1.695	18.01	4.57	11.6	86.4	2.0	-5.08	0.54	0.79	2.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21904	2661	14	0	43	0	0	logfile
✘	5GJW	9515	2023-08-16	2016-07-02	3.9	4.02	—	4.0	0.012	1.51	20.0	0.08	11.56	0.01	1.844	12.82	1.50	12.8	85.5	1.7	-5.28	0.55	0.80	1.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21561	2676	14	0	29	0	0	logfile
✘	5GKY	9518	2023-08-11	2016-07-07	3.8	4.18	—	4.0	0.017	1.70	19.0	0.10	11.29	0.01	1.789	19.04	0.51	5.8	91.8	2.5	-2.71	0.73	0.79	1.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	111036	15068	12	0	4	0	0	logfile
✘	5GKZ	9519	2023-08-11	2016-07-07	4.0	4.10	—	4.0	0.019	1.71	36.0	0.11	11.29	0.01	1.755	15.04	0.51	6.5	91.2	2.3	-2.89	0.72	0.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	111000	15068	12	0	4	0	0	logfile
✘	5GL0	9520	2023-08-11	2016-07-07	4.2	4.40	—	4.2	0.018	1.72	17.0	0.10	11.34	0.01	1.957	21.25	0.51	6.5	90.6	2.9	-2.58	0.74	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	111000	15068	12	0	4	0	0	logfile

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