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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7XR4 | 33407 | 2023-02-19 | 2022-05-09 | 3.4 | 3.26 | 3.35 | 3.4 | 0.007 | 0.94 | 0.0 | 0.05 | 14.23 | 0.00 | 2.304 | 10.91 | 0.29 | 2.1 | 97.9 | 0.0 | 1.68 | 0.73 | 0.85 | 1.65 | 3.4 | 0.003 | 0.54 | 0.0 | 0.04 | 15.09 | 0.00 | 2.237 | 10.24 | 0.19 | 1.3 | 98.7 | 0.0 | 3.19 | 1.07 | 0.71 | 0.85 | 1.38 | 10026 | 1278 | 6 | 0 | 27 | 0 | 0 | logfile |
✔ | 7W0B | 32237 | 2023-02-20 | 2021-11-18 | 3.33 | 3.61 | — | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 14.32 | 0.00 | 2.049 | 11.71 | 0.00 | 5.0 | 94.9 | 0.1 | 0.14 | 0.84 | 0.79 | 1.45 | 3.5 | 0.003 | 0.63 | 0.0 | 0.04 | 16.03 | 0.00 | 2.154 | 12.02 | 0.14 | 4.4 | 95.5 | 0.1 | 0.34 | 0.46 | 0.84 | 0.79 | 1.67 | 12997 | 1602 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PKo | 13474 | 2023-02-23 | 2021-08-26 | 3.9 | 4.01 | — | 3.9 | 0.004 | 0.66 | 0.0 | 0.04 | 14.59 | 0.00 | 2.205 | 10.80 | 0.00 | 7.5 | 92.5 | 0.0 | -4.16 | 0.76 | 0.82 | 2.59 | 3.9 | 0.003 | 0.65 | 0.0 | 0.04 | 16.06 | 0.00 | 2.180 | 12.19 | 0.62 | 5.6 | 94.4 | 0.0 | -0.75 | 0.64 | 0.75 | 0.81 | 2.41 | 20368 | 2504 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PEK | 20327 | 2023-02-20 | 2019-06-20 | 4.2 | 4.25 | — | 4.2 | 0.005 | 0.73 | 0.0 | 0.03 | 13.79 | 0.00 | 1.913 | 4.42 | 0.00 | 0.8 | 99.2 | 0.0 | -2.47 | 0.70 | 0.74 | — | 4.2 | 0.003 | 0.74 | 0.0 | 0.04 | 14.87 | 0.00 | 1.129 | 14.37 | 0.00 | 3.0 | 97.0 | 0.0 | -0.34 | 0.99 | 0.71 | 0.77 | — | 11106 | 1405 | 11 | 0 | 13 | 0 | 0 | logfile |
✔ | 6VX5 | 21430 | 2023-02-20 | 2020-02-21 | 3.03 | 3.58 | — | 3.5 | 0.006 | 0.80 | 0.0 | 0.05 | 14.27 | 0.00 | 2.348 | 4.97 | 0.00 | 3.3 | 96.7 | 0.0 | -6.15 | 0.72 | 0.84 | 2.92 | 3.5 | 0.003 | 0.65 | 0.0 | 0.04 | 16.41 | 0.00 | 2.259 | 9.26 | 0.50 | 1.6 | 98.4 | 0.0 | -0.38 | 1.27 | 0.67 | 0.80 | 2.34 | 13056 | 1575 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 5BKJ | 9406 | 2023-02-22 | 2021-03-19 | 3.5 | 3.68 | — | 3.7 | 0.006 | 0.81 | 0.0 | 0.06 | 14.99 | 0.00 | 2.251 | 4.94 | 1.09 | 4.1 | 95.9 | 0.0 | -3.93 | 0.69 | 0.84 | 2.13 | 3.7 | 0.002 | 0.52 | 0.0 | 0.05 | 16.34 | 0.00 | 2.242 | 7.50 | 0.33 | 2.0 | 98.0 | 0.0 | 0.25 | 1.63 | 0.69 | 0.83 | 1.97 | 16939 | 2156 | 16 | 0 | 7 | 4 | 0 | logfile |
✔ | 7VHQ | 32003 | 2023-02-22 | 2021-09-22 | 3.27 | 3.68 | — | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 13.43 | 0.00 | 2.165 | 9.53 | 0.00 | 3.1 | 96.9 | 0.0 | 1.82 | 0.73 | 0.82 | 1.67 | 3.4 | 0.004 | 0.63 | 0.0 | 0.04 | 15.43 | 0.00 | 2.148 | 10.42 | 0.61 | 4.1 | 95.9 | 0.0 | 1.79 | 0.42 | 0.74 | 0.85 | 1.46 | 16650 | 2076 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ELA | 31178 | 2023-02-20 | 2021-04-09 | 3.4 | 3.44 | — | 3.4 | 0.003 | 0.57 | 0.0 | 0.04 | 15.25 | 0.00 | 2.153 | 11.82 | 2.79 | 7.9 | 92.1 | 0.0 | -2.61 | 0.72 | 0.78 | 2.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11791 | 1451 | 5 | 7 | 3 | 0 | 0 | logfile |
✔ | 6UWN | 20925 | 2023-02-20 | 2019-11-05 | 3.5 | 3.59 | — | 3.6 | 0.007 | 0.73 | 0.0 | 0.05 | 13.75 | 0.00 | 2.285 | 3.49 | 0.15 | 3.4 | 96.6 | 0.0 | -4.35 | 0.67 | 0.83 | 2.62 | 3.6 | 0.003 | 0.55 | 0.0 | 0.05 | 15.85 | 0.00 | 2.126 | 6.29 | 0.65 | 2.7 | 97.3 | 0.0 | 0.44 | 0.58 | 0.66 | 0.81 | 1.79 | 13258 | 1776 | 20 | 0 | 24 | 4 | 0 | logfile |
✔ | 7EKi | 31168 | 2023-02-21 | 2021-04-05 | 3.18 | 3.70 | — | 3.6 | 0.005 | 0.61 | 0.0 | 0.06 | 12.25 | 0.00 | 2.230 | 5.79 | 0.88 | 5.3 | 94.7 | 0.0 | -1.88 | 0.69 | 0.81 | 2.83 | 3.6 | 0.002 | 0.53 | 0.0 | 0.04 | 13.80 | 0.00 | 2.183 | 5.16 | 0.18 | 5.1 | 94.9 | 0.0 | -0.53 | 0.39 | 0.70 | 0.82 | 2.46 | 16005 | 1975 | 15 | 0 | 20 | 0 | 0 | logfile |
✔ | 7Y00 | 33536 | 2023-02-20 | 2022-06-03 | 3.96 | 4.73 | 3.89 | 3.9 | 0.004 | 0.69 | 0.0 | 0.04 | 27.68 | 0.00 | 1.717 | 12.80 | 0.31 | 1.5 | 98.5 | 0.0 | 0.85 | 0.90 | 0.80 | 0.94 | 3.9 | 0.005 | 0.70 | 0.0 | 0.04 | 29.16 | 0.00 | 2.100 | 14.11 | 0.47 | 2.3 | 97.7 | 0.0 | 1.85 | 2.02 | 0.93 | 0.87 | 1.15 | 12411 | 762 | 10 | 310 | 0 | 0 | 0 | logfile |
✔ | 7NS4 | 12560 | 2023-02-17 | 2021-03-05 | 3.9 | 3.81 | 3.79 | 3.8 | 0.006 | 0.79 | 0.0 | 0.05 | 14.40 | 0.00 | 2.116 | 9.17 | 0.00 | 10.8 | 89.2 | 0.0 | -1.02 | 0.75 | 0.84 | 2.90 | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 15.99 | 0.00 | 2.210 | 7.87 | 0.51 | 8.2 | 91.8 | 0.0 | 0.54 | 0.36 | 0.74 | 0.83 | 2.20 | 5465 | 698 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6RT0 | 4994 | 2023-02-17 | 2019-05-22 | 3.1 | 3.18 | — | 3.1 | 0.006 | 0.97 | 0.0 | 0.06 | 14.23 | 0.00 | 2.415 | 2.11 | 1.06 | 11.5 | 88.5 | 0.0 | -3.76 | 0.71 | 0.84 | 6.51 | 3.1 | 0.009 | 0.89 | 0.0 | 0.06 | 16.41 | 0.00 | 2.255 | 5.41 | 0.43 | 17.4 | 82.6 | 0.0 | -4.13 | 0.82 | 0.72 | 0.86 | 5.76 | 4925 | 735 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TG9 | 10495 | 2023-02-25 | 2019-11-15 | 3.24 | 3.34 | — | 3.3 | 0.016 | 1.33 | 0.0 | 0.06 | 14.65 | 0.00 | 1.847 | 11.53 | 0.62 | 7.8 | 92.0 | 0.2 | -4.02 | 0.80 | 0.78 | 3.11 | 3.3 | 0.004 | 0.69 | 0.0 | 0.04 | 16.26 | 0.00 | 1.975 | 10.47 | 0.23 | 5.3 | 94.5 | 0.1 | -1.22 | 0.68 | 0.83 | 0.84 | 2.89 | 25412 | 3318 | 14 | 0 | 26 | 0 | 0 | logfile |
✔ | 7M9A | 23721 | 2023-02-25 | 2021-03-30 | 3.9 | 3.60 | 3.86 | 3.9 | 0.003 | 0.66 | 4.0 | 0.04 | 14.89 | 0.00 | 1.381 | 7.36 | 0.11 | 2.6 | 97.3 | 0.1 | 0.14 | 0.69 | 0.65 | 1.16 | 3.8 | 0.003 | 0.68 | 0.0 | 0.04 | 17.96 | 0.00 | 2.100 | 9.50 | 0.37 | 2.8 | 97.1 | 0.1 | 0.90 | 2.88 | 0.76 | 0.76 | 1.04 | 26139 | 3084 | 24 | 54 | 10 | 0 | 0 | logfile |
✔ | 7XD0 | 33131 | 2023-02-23 | 2022-03-26 | 3.48 | 2.98 | — | 2.9 | 0.003 | 0.57 | 0.0 | 0.04 | 27.21 | 0.00 | 2.062 | 11.16 | 0.26 | 3.0 | 97.0 | 0.0 | 1.30 | 0.82 | 0.81 | 1.79 | 2.9 | 0.004 | 0.60 | 0.0 | 0.04 | 28.06 | 0.00 | 2.167 | 10.17 | 0.13 | 4.2 | 95.8 | 0.0 | 1.75 | 0.36 | 0.83 | 0.83 | 1.58 | 13222 | 915 | 12 | 292 | 0 | 0 | 0 | logfile |
✔ | 5L08 | 8300 | 2023-02-21 | 2016-07-26 | 4.6 | 3.95 | — | 4.3 | 0.011 | 1.03 | 0.0 | 0.05 | 11.66 | 0.00 | 2.041 | 6.99 | 0.00 | 3.0 | 96.8 | 0.2 | -0.41 | 0.34 | 0.71 | — | 4.5 | 0.006 | 1.23 | 0.0 | 0.06 | 14.56 | 0.01 | 1.854 | 41.71 | 0.00 | 6.7 | 93.3 | 0.0 | -3.29 | 3.82 | 0.26 | 0.71 | — | 13617 | 1629 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 5BKK | 9407 | 2023-02-22 | 2021-03-19 | 3.5 | 3.17 | — | 3.5 | 0.004 | 0.72 | 0.0 | 0.05 | 14.72 | 0.00 | 2.242 | 5.33 | 0.11 | 3.5 | 96.5 | 0.0 | -4.88 | 0.68 | 0.82 | 2.52 | 3.5 | 0.003 | 0.56 | 0.0 | 0.05 | 16.37 | 0.00 | 2.142 | 8.29 | 0.33 | 2.9 | 97.1 | 0.0 | -0.82 | 1.21 | 0.65 | 0.82 | 2.02 | 16831 | 2156 | 11 | 0 | 6 | 0 | 0 | logfile |
✔ | 6W18 | 21503 | 2023-02-20 | 2020-03-03 | 4.2 | 4.20 | 4.18 | 4.2 | 0.002 | 0.41 | 0.0 | 0.04 | 11.01 | 0.00 | 2.196 | 4.75 | 0.00 | 3.0 | 97.0 | 0.0 | -3.43 | 0.71 | 0.62 | — | 4.2 | 0.003 | 0.71 | 0.0 | 0.04 | 12.93 | 0.00 | 2.101 | 9.33 | 0.18 | 7.3 | 92.7 | 0.0 | -1.63 | 1.34 | 0.77 | 0.71 | — | 13151 | 1837 | 9 | 0 | 3 | 0 | 0 | logfile |
✔ | 8AUR | 15673 | 2023-02-17 | 2022-08-25 | 3.47 | 3.44 | 3.63 | 3.6 | 0.002 | 0.54 | 0.0 | 0.04 | 13.41 | 0.00 | 2.350 | 6.62 | 0.00 | 5.6 | 94.4 | 0.0 | -1.30 | 0.72 | 0.82 | 2.41 | 3.5 | 0.004 | 0.66 | 0.0 | 0.04 | 16.10 | 0.00 | 2.233 | 7.09 | 0.00 | 9.4 | 90.5 | 0.1 | -1.38 | 1.66 | 0.71 | 0.83 | 2.56 | 5409 | 699 | 3 | 0 | 0 | 0 | 0 | logfile |