Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8EX4	28650	2023-08-09	2022-10-24	2.93	3.19	2.90	3.2	0.005	0.73	0.0	0.04	13.95	0.00	2.165	9.46	0.00	1.9	98.1	0.0	0.40	0.59	0.80	4.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3226	417	1	0	1	0	0	logfile
✔	7R43	14261	2023-08-16	2022-02-08	2.4	2.41	—	2.5	0.007	0.79	0.0	0.84	15.03	0.00	1.899	3.40	0.01	2.5	97.4	0.0	0.39	0.69	0.89	5.73	2.4	0.007	1.30	0.0	0.25	16.38	0.00	1.204	4.60	0.56	1.6	98.4	0.0	1.60	0.31	0.69	0.90	4.85	68334	8188	109	0	47	885	0	logfile
✔	6VWN	21422	2023-08-23	2020-02-20	3.4	3.71	—	3.2	0.002	0.58	0.0	0.03	14.91	0.00	1.951	7.12	3.85	4.3	95.7	0.0	-3.14	0.83	0.82	1.13	3.2	0.004	0.63	0.0	0.03	16.38	0.00	1.849	16.56	0.58	6.4	93.6	0.0	-1.32	1.24	0.84	0.87	1.12	140036	5341	57	4580	55	0	0	logfile
✔	7X1Z	32953	2023-08-17	2022-02-25	3.3	3.65	3.29	3.5	0.003	0.76	0.0	0.05	15.42	0.00	2.095	5.74	0.53	6.4	93.4	0.2	-2.63	0.82	0.84	2.74	3.5	0.003	0.54	0.0	0.04	16.56	0.00	1.935	9.46	0.16	6.6	93.3	0.1	-1.31	0.40	0.80	0.86	2.95	23304	2904	12	0	24	0	0	logfile
✔	8GK0	40177	2023-08-18	2023-03-16	3.44	3.95	3.64	3.8	0.004	0.71	0.0	0.17	14.79	0.00	2.205	13.82	0.77	1.9	98.1	0.0	0.87	0.75	0.85	1.66	3.8	0.003	0.80	0.0	0.07	15.49	0.00	2.002	13.22	0.27	2.5	97.5	0.0	0.98	1.18	0.73	0.85	1.35	23882	3089	3	0	1	0	0	logfile
✔	8oMQ	16974	2023-08-11	2023-03-31	3.11	2.37	3.05	3.0	0.007	1.23	0.0	0.08	16.49	0.00	1.847	16.52	2.99	7.3	92.7	0.0	-3.30	0.75	0.78	1.53	3.0	0.004	0.68	0.0	0.04	17.78	0.00	1.899	17.36	0.51	4.0	96.0	0.0	-0.67	0.53	0.73	0.73	1.35	10584	1322	4	0	4	0	0	logfile
✔	7QSM	14134	2023-08-17	2022-01-13	2.3	2.31	—	2.3	0.007	0.92	0.0	0.85	15.84	0.00	1.463	2.79	0.58	2.3	97.6	0.0	0.75	0.76	0.90	6.42	2.3	0.007	1.29	0.0	0.25	16.18	0.00	1.942	4.36	0.74	1.7	98.3	0.0	1.82	0.81	0.77	0.91	5.62	71640	8262	118	0	62	2774	0	logfile
✔	7UGX	26498	2023-08-09	2022-03-25	2.96	3.60	2.95	3.5	0.002	0.50	0.0	0.04	10.61	0.00	2.234	3.61	0.00	1.5	98.5	0.0	1.81	0.48	0.83	2.71	3.5	0.003	0.63	0.0	0.04	13.34	0.00	2.184	6.27	0.62	2.2	97.8	0.0	2.70	0.98	0.49	0.88	1.91	3108	416	1	0	3	0	0	logfile
✔	7UPK	26668	2023-08-14	2022-04-15	2.8	3.03	2.80	3.0	0.003	0.57	0.0	0.04	12.65	0.00	2.156	5.84	0.06	1.7	98.3	0.0	-0.01	0.70	0.81	5.07	3.1	0.003	0.54	0.0	0.04	15.71	0.00	2.165	6.80	1.91	1.6	98.4	0.0	0.51	0.89	0.69	0.87	4.91	15276	1983	9	0	0	0	0	logfile
✔	8F7C	28902	2023-08-14	2022-11-18	3.92	4.16	3.93	4.2	0.002	0.52	0.0	0.04	13.95	0.00	1.675	4.95	0.00	3.2	96.8	0.0	0.02	0.64	0.82	2.00	4.2	0.003	0.62	0.0	0.04	15.82	0.00	2.139	5.01	0.48	2.8	97.2	0.0	1.25	0.40	0.66	0.82	1.78	15925	2009	7	0	0	0	0	logfile
✔	6ZoL	11322	2023-08-18	2020-07-07	2.8	3.00	2.78	2.9	0.003	0.55	0.0	0.04	14.47	0.00	1.309	4.02	1.49	3.0	97.0	0.0	0.69	0.75	0.87	3.29	3.0	0.003	0.57	0.0	0.04	16.43	0.00	1.136	5.15	2.57	3.1	96.9	0.0	0.64	3.08	0.76	0.88	2.77	25591	1944	22	472	59	0	0	logfile
✔	7UGD	26487	2023-08-09	2022-03-24	2.95	3.61	2.95	3.5	0.002	0.45	0.0	0.04	11.38	0.00	2.005	2.21	0.00	0.7	99.3	0.0	0.34	0.49	0.84	3.05	3.5	0.004	0.58	0.0	0.04	14.29	0.00	2.225	3.80	0.31	0.2	99.8	0.0	2.52	0.45	0.49	0.85	2.12	3079	415	1	0	3	0	0	logfile
✔	7QSN	14139	2023-08-16	2022-01-13	2.81	2.74	2.82	2.7	0.008	0.92	0.0	0.85	15.31	0.00	1.443	3.83	0.01	3.3	96.7	0.0	-0.45	0.77	0.87	4.68	2.7	0.007	1.33	0.0	0.26	16.43	0.00	1.937	6.36	1.15	2.4	97.6	0.0	1.19	1.17	0.77	0.88	4.03	69320	8201	116	0	59	1096	0	logfile
✔	7QSK	14132	2023-08-16	2022-01-13	2.84	2.93	2.90	2.8	0.008	0.91	0.0	0.84	15.15	0.00	1.435	3.34	0.15	3.1	96.9	0.1	0.26	0.77	0.87	4.81	2.9	0.007	1.30	0.0	0.25	16.30	0.00	1.969	5.83	0.87	2.1	97.8	0.0	1.67	0.50	0.78	0.90	3.97	69987	8291	116	0	59	1060	0	logfile
✔	7ZK4	14754	2023-08-11	2022-04-12	2.6	2.81	2.63	2.9	0.006	0.86	6.0	0.05	14.14	0.00	2.008	9.40	0.10	2.3	97.7	0.0	1.26	0.69	0.84	3.61	2.9	0.003	0.54	0.0	0.04	16.67	0.00	1.933	7.75	1.26	2.4	97.5	0.1	1.75	0.50	0.60	0.84	3.19	9337	1176	1	0	9	4	0	logfile
✔	6VWL	21420	2023-08-23	2020-02-20	3.1	3.37	—	3.0	0.005	0.62	0.0	0.04	13.89	0.00	1.922	7.24	1.40	4.2	95.7	0.0	-2.42	0.82	0.85	2.58	3.0	0.003	0.56	0.0	0.03	15.33	0.00	1.910	12.94	0.39	5.1	94.9	0.0	-0.57	0.53	0.83	0.87	2.05	140603	5383	58	4593	34	0	0	logfile
✔	7QSo	14140	2023-08-13	2022-01-13	3.02	2.98	3.05	2.9	0.007	0.83	0.0	0.86	14.42	0.00	1.456	4.16	0.01	3.7	96.2	0.0	-0.53	0.76	0.86	4.06	2.8	0.007	1.33	0.0	0.26	15.84	0.00	1.939	6.76	0.11	2.6	97.3	0.0	1.11	0.93	0.77	0.88	3.27	66113	8018	68	0	46	0	0	logfile
✔	7XoK	33350	2023-08-09	2022-05-01	2.7	3.82	2.75	3.2	0.003	0.50	0.0	0.04	13.15	0.00	2.160	10.61	0.00	1.1	98.9	0.0	2.23	0.87	0.86	1.97	3.2	0.003	0.57	0.0	0.04	14.79	0.00	2.108	12.44	0.34	1.0	99.0	0.0	2.10	0.30	0.87	0.86	1.75	53970	7336	14	0	0	0	0	logfile
✔	7UH3	26504	2023-08-09	2022-03-25	2.99	3.63	2.98	3.5	0.003	0.61	0.0	0.04	10.05	0.00	1.909	4.09	0.00	2.0	98.0	0.0	0.91	0.48	0.84	2.83	3.5	0.003	0.70	0.0	0.04	13.54	0.00	2.188	8.97	1.24	2.2	97.8	0.0	1.59	1.02	0.50	0.86	1.53	3096	416	1	0	3	0	0	logfile
✔	7XoJ	33349	2023-08-09	2022-05-01	2.8	3.84	2.82	3.2	0.003	0.48	0.0	0.04	13.28	0.00	2.189	10.04	0.00	0.9	99.1	0.0	2.28	0.88	0.87	2.08	3.2	0.004	0.60	0.0	0.04	14.86	0.00	2.086	12.37	0.44	1.4	98.6	0.0	2.09	0.29	0.88	0.88	1.95	53970	7336	14	0	0	0	0	logfile

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