Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XR4	33407	2023-02-19	2022-05-09	3.4	3.26	3.35	3.4	0.007	0.94	0.0	0.05	14.23	0.00	2.304	10.91	0.29	2.1	97.9	0.0	1.68	0.73	0.85	1.65	3.4	0.003	0.54	0.0	0.04	15.09	0.00	2.237	10.24	0.19	1.3	98.7	0.0	3.19	1.07	0.71	0.85	1.38	10026	1278	6	0	27	0	0	logfile
✔	7W0B	32237	2023-02-20	2021-11-18	3.33	3.61	—	3.5	0.003	0.60	0.0	0.04	14.32	0.00	2.049	11.71	0.00	5.0	94.9	0.1	0.14	0.84	0.79	1.45	3.5	0.003	0.63	0.0	0.04	16.03	0.00	2.154	12.02	0.14	4.4	95.5	0.1	0.34	0.46	0.84	0.79	1.67	12997	1602	2	0	0	0	0	logfile
✔	7PKo	13474	2023-02-23	2021-08-26	3.9	4.01	—	3.9	0.004	0.66	0.0	0.04	14.59	0.00	2.205	10.80	0.00	7.5	92.5	0.0	-4.16	0.76	0.82	2.59	3.9	0.003	0.65	0.0	0.04	16.06	0.00	2.180	12.19	0.62	5.6	94.4	0.0	-0.75	0.64	0.75	0.81	2.41	20368	2504	8	0	0	0	0	logfile
✔	6PEK	20327	2023-02-20	2019-06-20	4.2	4.25	—	4.2	0.005	0.73	0.0	0.03	13.79	0.00	1.913	4.42	0.00	0.8	99.2	0.0	-2.47	0.70	0.74	—	4.2	0.003	0.74	0.0	0.04	14.87	0.00	1.129	14.37	0.00	3.0	97.0	0.0	-0.34	0.99	0.71	0.77	—	11106	1405	11	0	13	0	0	logfile
✔	6VX5	21430	2023-02-20	2020-02-21	3.03	3.58	—	3.5	0.006	0.80	0.0	0.05	14.27	0.00	2.348	4.97	0.00	3.3	96.7	0.0	-6.15	0.72	0.84	2.92	3.5	0.003	0.65	0.0	0.04	16.41	0.00	2.259	9.26	0.50	1.6	98.4	0.0	-0.38	1.27	0.67	0.80	2.34	13056	1575	6	0	1	0	0	logfile
✔	5BKJ	9406	2023-02-22	2021-03-19	3.5	3.68	—	3.7	0.006	0.81	0.0	0.06	14.99	0.00	2.251	4.94	1.09	4.1	95.9	0.0	-3.93	0.69	0.84	2.13	3.7	0.002	0.52	0.0	0.05	16.34	0.00	2.242	7.50	0.33	2.0	98.0	0.0	0.25	1.63	0.69	0.83	1.97	16939	2156	16	0	7	4	0	logfile
✔	7VHQ	32003	2023-02-22	2021-09-22	3.27	3.68	—	3.5	0.003	0.60	0.0	0.04	13.43	0.00	2.165	9.53	0.00	3.1	96.9	0.0	1.82	0.73	0.82	1.67	3.4	0.004	0.63	0.0	0.04	15.43	0.00	2.148	10.42	0.61	4.1	95.9	0.0	1.79	0.42	0.74	0.85	1.46	16650	2076	12	0	0	0	0	logfile
✘	7ELA	31178	2023-02-20	2021-04-09	3.4	3.44	—	3.4	0.003	0.57	0.0	0.04	15.25	0.00	2.153	11.82	2.79	7.9	92.1	0.0	-2.61	0.72	0.78	2.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11791	1451	5	7	3	0	0	logfile
✔	6UWN	20925	2023-02-20	2019-11-05	3.5	3.59	—	3.6	0.007	0.73	0.0	0.05	13.75	0.00	2.285	3.49	0.15	3.4	96.6	0.0	-4.35	0.67	0.83	2.62	3.6	0.003	0.55	0.0	0.05	15.85	0.00	2.126	6.29	0.65	2.7	97.3	0.0	0.44	0.58	0.66	0.81	1.79	13258	1776	20	0	24	4	0	logfile
✔	7EKi	31168	2023-02-21	2021-04-05	3.18	3.70	—	3.6	0.005	0.61	0.0	0.06	12.25	0.00	2.230	5.79	0.88	5.3	94.7	0.0	-1.88	0.69	0.81	2.83	3.6	0.002	0.53	0.0	0.04	13.80	0.00	2.183	5.16	0.18	5.1	94.9	0.0	-0.53	0.39	0.70	0.82	2.46	16005	1975	15	0	20	0	0	logfile
✔	7Y00	33536	2023-02-20	2022-06-03	3.96	4.73	3.89	3.9	0.004	0.69	0.0	0.04	27.68	0.00	1.717	12.80	0.31	1.5	98.5	0.0	0.85	0.90	0.80	0.94	3.9	0.005	0.70	0.0	0.04	29.16	0.00	2.100	14.11	0.47	2.3	97.7	0.0	1.85	2.02	0.93	0.87	1.15	12411	762	10	310	0	0	0	logfile
✔	7NS4	12560	2023-02-17	2021-03-05	3.9	3.81	3.79	3.8	0.006	0.79	0.0	0.05	14.40	0.00	2.116	9.17	0.00	10.8	89.2	0.0	-1.02	0.75	0.84	2.90	3.8	0.003	0.63	0.0	0.04	15.99	0.00	2.210	7.87	0.51	8.2	91.8	0.0	0.54	0.36	0.74	0.83	2.20	5465	698	4	0	2	0	0	logfile
✔	6RT0	4994	2023-02-17	2019-05-22	3.1	3.18	—	3.1	0.006	0.97	0.0	0.06	14.23	0.00	2.415	2.11	1.06	11.5	88.5	0.0	-3.76	0.71	0.84	6.51	3.1	0.009	0.89	0.0	0.06	16.41	0.00	2.255	5.41	0.43	17.4	82.6	0.0	-4.13	0.82	0.72	0.86	5.76	4925	735	10	0	0	0	0	logfile
✔	6TG9	10495	2023-02-25	2019-11-15	3.24	3.34	—	3.3	0.016	1.33	0.0	0.06	14.65	0.00	1.847	11.53	0.62	7.8	92.0	0.2	-4.02	0.80	0.78	3.11	3.3	0.004	0.69	0.0	0.04	16.26	0.00	1.975	10.47	0.23	5.3	94.5	0.1	-1.22	0.68	0.83	0.84	2.89	25412	3318	14	0	26	0	0	logfile
✔	7M9A	23721	2023-02-25	2021-03-30	3.9	3.60	3.86	3.9	0.003	0.66	4.0	0.04	14.89	0.00	1.381	7.36	0.11	2.6	97.3	0.1	0.14	0.69	0.65	1.16	3.8	0.003	0.68	0.0	0.04	17.96	0.00	2.100	9.50	0.37	2.8	97.1	0.1	0.90	2.88	0.76	0.76	1.04	26139	3084	24	54	10	0	0	logfile
✔	7XD0	33131	2023-02-23	2022-03-26	3.48	2.98	—	2.9	0.003	0.57	0.0	0.04	27.21	0.00	2.062	11.16	0.26	3.0	97.0	0.0	1.30	0.82	0.81	1.79	2.9	0.004	0.60	0.0	0.04	28.06	0.00	2.167	10.17	0.13	4.2	95.8	0.0	1.75	0.36	0.83	0.83	1.58	13222	915	12	292	0	0	0	logfile
✔	5L08	8300	2023-02-21	2016-07-26	4.6	3.95	—	4.3	0.011	1.03	0.0	0.05	11.66	0.00	2.041	6.99	0.00	3.0	96.8	0.2	-0.41	0.34	0.71	—	4.5	0.006	1.23	0.0	0.06	14.56	0.01	1.854	41.71	0.00	6.7	93.3	0.0	-3.29	3.82	0.26	0.71	—	13617	1629	9	0	0	0	0	logfile
✔	5BKK	9407	2023-02-22	2021-03-19	3.5	3.17	—	3.5	0.004	0.72	0.0	0.05	14.72	0.00	2.242	5.33	0.11	3.5	96.5	0.0	-4.88	0.68	0.82	2.52	3.5	0.003	0.56	0.0	0.05	16.37	0.00	2.142	8.29	0.33	2.9	97.1	0.0	-0.82	1.21	0.65	0.82	2.02	16831	2156	11	0	6	0	0	logfile
✔	6W18	21503	2023-02-20	2020-03-03	4.2	4.20	4.18	4.2	0.002	0.41	0.0	0.04	11.01	0.00	2.196	4.75	0.00	3.0	97.0	0.0	-3.43	0.71	0.62	—	4.2	0.003	0.71	0.0	0.04	12.93	0.00	2.101	9.33	0.18	7.3	92.7	0.0	-1.63	1.34	0.77	0.71	—	13151	1837	9	0	3	0	0	logfile
✔	8AUR	15673	2023-02-17	2022-08-25	3.47	3.44	3.63	3.6	0.002	0.54	0.0	0.04	13.41	0.00	2.350	6.62	0.00	5.6	94.4	0.0	-1.30	0.72	0.82	2.41	3.5	0.004	0.66	0.0	0.04	16.10	0.00	2.233	7.09	0.00	9.4	90.5	0.1	-1.38	1.66	0.71	0.83	2.56	5409	699	3	0	0	0	0	logfile

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