Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6N7V	0364	2021-06-02	2018-11-28	3.8	4.02	—	3.8	0.005	0.89	0.0	0.05	14.42	0.00	2.119	3.58	0.15	3.8	96.2	0.0	-3.41	0.76	0.74	1.21	3.8	0.003	0.71	0.0	0.04	17.15	0.00	1.919	11.60	0.22	4.7	95.3	0.0	-0.86	2.64	0.79	0.77	1.07	12861	1606	12	16	10	0	0	logfile
✘	5G2X	3331	2021-06-02	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19072	487	3	704	0	0	0	logfile
✔	5M5W	3446	2021-06-04	2016-10-23	3.8	3.89	—	3.9	0.003	0.62	4.0	0.05	12.18	0.00	1.405	11.70	1.35	4.3	95.6	0.1	-4.15	0.68	0.68	1.44	3.8	0.004	0.79	0.0	0.05	16.42	0.01	2.043	16.01	0.74	7.1	92.9	0.0	-1.75	0.89	0.78	0.79	1.33	34780	4271	21	43	7	0	0	logfile
✔	5Z3o	6880	2021-06-02	2018-01-08	3.62	3.82	—	3.6	0.003	0.63	0.0	0.04	24.28	0.00	2.055	14.50	0.44	9.3	90.7	0.1	-3.57	0.88	0.81	1.22	3.6	0.004	0.74	0.0	0.04	26.57	0.00	1.999	15.56	0.78	4.9	94.8	0.2	0.00	2.11	0.89	0.84	0.79	16802	1346	11	292	2	0	0	logfile
✔	6P5A	20254	2021-06-02	2019-05-30	3.6	3.77	3.56	3.7	0.003	0.53	0.0	0.04	20.09	0.00	1.890	4.46	0.00	2.0	98.0	0.0	-1.69	0.75	0.80	2.47	3.7	0.003	0.57	0.0	0.04	21.81	0.00	1.961	6.50	0.30	2.6	97.4	0.0	1.15	0.60	0.76	0.81	2.68	11948	1120	12	136	6	0	0	logfile
✘	6NM9	9398	2021-06-03	2019-01-10	3.38	3.86	—	3.8	0.008	0.77	3.0	0.05	15.44	0.00	1.884	18.46	0.29	12.6	87.3	0.1	-4.62	0.72	0.76	1.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22916	2640	10	50	4	0	0	logfile
✔	6PE2	20321	2021-06-02	2019-06-19	4.0	4.84	3.77	4.5	0.003	0.54	0.0	0.04	21.60	0.00	1.387	6.43	0.00	3.2	96.8	0.0	-1.36	0.90	0.84	—	4.5	0.003	0.61	0.0	0.04	22.62	0.00	1.987	9.79	0.00	2.9	97.1	0.0	2.41	1.41	0.91	0.87	—	12746	1148	13	170	6	0	0	logfile
✔	5o9G	3765	2021-06-02	2017-06-19	4.8	5.07	4.71	10.4	0.002	0.47	0.0	0.03	22.47	0.00	2.194	7.36	0.36	9.1	90.8	0.1	-4.25	0.51	0.13	—	4.8	0.005	0.78	0.0	0.04	25.05	0.01	2.033	22.23	0.07	6.7	93.3	0.1	-1.21	2.75	0.88	0.82	—	19681	1610	11	324	2	0	0	logfile
✔	6XTB	10618	2021-06-01	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.005	1.19	0.0	0.05	9.82	0.01	2.083	13.22	0.00	33.8	66.2	0.0	-6.22	3.23	0.34	0.65	—	1161	235	1	0	0	0	0	logfile
✔	6G1S	4340	2021-06-02	2018-03-21	3.93	4.13	3.54	4.0	0.008	0.89	0.0	0.05	9.81	0.00	2.015	12.29	0.00	12.7	87.3	0.0	-4.00	0.62	0.78	1.56	4.0	0.004	0.75	0.0	0.04	14.81	0.01	1.958	28.44	0.53	10.1	89.9	0.0	0.01	1.91	0.63	0.78	2.09	9891	645	4	30	1	0	4096	logfile
✔	6DKF	7952	2021-06-02	2018-05-29	3.7	3.47	—	3.8	0.010	0.88	0.0	0.05	8.96	0.00	1.761	11.87	0.00	3.9	96.1	0.0	-5.10	0.73	0.76	2.82	3.7	0.003	0.72	0.0	0.04	16.78	0.00	2.105	13.09	0.89	2.8	97.2	0.0	0.39	2.33	0.73	0.79	1.65	17060	2314	14	0	0	0	0	logfile
✔	3J6J	5925	2021-06-02	2014-03-13	3.64	4.17	—	3.9	0.007	1.41	0.0	0.06	15.90	0.00	1.578	32.19	6.10	4.1	95.0	0.9	-1.46	0.86	0.83	1.23	3.9	0.006	1.14	0.0	0.05	17.79	0.01	1.997	27.23	1.74	3.9	95.9	0.1	-0.30	1.81	0.88	0.88	1.96	6344	776	8	0	0	0	0	logfile
✔	6D1W	7786	2021-06-02	2018-04-12	3.54	3.85	3.45	3.8	0.007	0.76	0.0	0.04	8.56	0.00	2.154	18.61	0.27	6.5	93.3	0.2	-3.21	0.70	0.73	2.98	3.8	0.004	0.65	0.0	0.04	14.90	0.00	2.207	11.46	0.34	3.8	96.0	0.2	0.89	0.95	0.69	0.79	2.63	14492	1804	8	0	12	0	0	logfile
✔	5T4D	8354	2021-06-02	2016-08-29	3.0	3.12	2.96	3.1	0.010	0.80	0.0	0.05	8.89	0.00	2.120	12.20	0.26	4.4	95.6	0.0	-2.69	0.75	0.79	4.16	3.1	0.003	0.60	0.0	0.04	15.32	0.00	2.159	8.27	2.51	3.7	96.3	0.0	1.28	1.38	0.79	0.86	3.04	14876	1852	8	0	12	0	0	logfile
✔	6oG3	20051	2021-06-01	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.002	0.66	0.0	0.00	4.56	0.00	2.650	3.04	0.00	4.9	95.1	0.0	0.48	2.10	0.66	0.84	—	1215	396	4	0	9	0	0	logfile
✔	5XWY	6777	2021-06-02	2017-06-30	3.2	3.25	—	3.2	0.008	1.18	1.0	0.06	12.95	0.00	2.263	3.59	0.87	7.6	92.3	0.1	-5.96	0.69	0.78	3.96	3.2	0.003	0.67	0.0	0.04	16.33	0.00	2.171	10.44	0.10	7.0	93.0	0.0	0.03	1.44	0.78	0.87	3.06	10493	1117	2	51	0	0	0	logfile
✔	5G2Y	3332	2021-06-02	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	11.90	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.00	0.0	0.05	24.02	0.01	1.984	73.74	0.00	0.0	0.0	0.0	—	3.29	0.90	0.79	—	13494	0	1	630	0	0	0	logfile
✔	6V03	20968	2021-06-02	2019-11-18	3.3	3.42	3.25	3.4	0.014	0.64	0.0	0.05	13.49	0.00	2.234	7.76	0.79	6.1	93.9	0.0	-4.30	0.73	0.82	3.39	3.4	0.004	0.61	0.0	0.05	14.87	0.00	2.203	7.24	1.00	4.7	95.3	0.0	-1.02	1.16	0.76	0.85	2.99	12808	1535	10	0	10	0	0	logfile
✔	6RVV	4443	2021-06-04	2019-06-03	3.7	3.95	—	3.9	0.006	0.60	0.0	0.05	13.27	0.00	2.245	2.48	0.00	2.0	98.0	0.0	-2.44	0.78	0.82	2.75	3.9	0.008	0.74	0.0	0.05	18.42	0.00	2.043	11.85	1.56	1.6	98.4	0.0	-1.21	2.03	0.80	0.84	2.86	110208	14520	384	0	120	0	0	logfile
✔	6MST	9232	2021-06-01	2018-10-18	2.7	2.92	1.72	2.8	0.006	0.85	0.0	0.05	7.68	0.00	2.294	1.43	0.00	1.9	98.1	0.0	-4.58	0.73	0.90	7.42	2.9	0.007	0.62	0.0	0.04	15.73	0.00	2.200	7.36	0.66	3.0	97.0	0.0	-3.51	1.22	0.68	0.91	7.12	5172	648	12	0	0	0	0	logfile

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