Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5FJ9	3179	2022-07-07	2015-10-06	4.6	4.67	—	4.6	0.004	1.21	0.0	0.05	12.45	0.00	1.842	13.11	4.04	16.0	82.8	1.1	-4.61	0.80	0.72	—	4.6	0.004	0.90	0.0	0.05	13.51	0.01	1.849	18.37	0.00	13.0	85.9	1.1	-2.32	2.54	0.83	0.78	—	38680	4845	22	0	41	0	0	logfile
✔	3J9C	6224	2022-07-05	2014-12-25	2.9	3.02	—	3.1	0.005	1.11	0.0	0.05	14.41	0.00	2.277	7.02	6.13	4.8	95.2	0.0	-0.81	0.74	0.87	2.67	3.0	0.003	0.59	0.0	0.04	16.40	0.00	2.184	8.15	3.09	2.6	97.4	0.0	0.29	1.52	0.76	0.86	3.08	23296	2961	7	0	14	0	0	logfile
✔	5XY3	6784	2022-07-02	2017-07-06	3.2	3.24	—	3.2	0.006	1.04	7.0	0.09	17.01	0.00	1.123	6.27	3.45	6.0	92.7	1.3	-3.33	0.61	0.76	2.54	3.2	0.007	0.78	3.0	0.04	16.61	0.01	1.765	9.19	0.20	5.0	94.7	0.4	-1.09	0.61	0.77	0.84	2.24	107145	5917	43	2815	0	0	0	logfile
✔	5FLX	3221	2022-07-05	2015-10-28	3.9	4.33	—	4.3	0.003	0.71	3.0	0.05	13.54	0.00	0.894	15.97	0.19	6.8	92.6	0.6	-2.97	0.42	0.58	0.37	4.2	0.004	0.77	0.0	0.04	16.83	0.01	1.899	21.83	0.99	8.4	91.1	0.5	-1.62	1.51	0.47	0.80	0.57	80592	4810	40	1972	76	0	0	logfile
✔	6KZ3	0784	2022-07-04	2019-09-23	3.1	3.29	—	3.2	0.006	0.68	0.0	0.05	13.19	0.00	2.194	9.64	0.82	11.2	88.8	0.0	-4.17	0.82	0.86	3.00	3.2	0.004	0.64	0.0	0.05	14.49	0.00	2.099	10.01	0.36	10.0	90.0	0.0	-1.99	0.35	0.82	0.88	3.09	20046	2646	6	0	0	0	0	logfile
✔	6iP1	9697	2022-07-03	2018-11-01	3.9	4.05	—	4.0	0.006	1.03	0.0	0.05	11.71	0.00	1.321	8.09	0.34	7.5	92.5	0.0	-5.85	0.59	0.72	1.01	4.0	0.004	0.95	0.0	0.04	18.38	0.00	2.200	16.40	1.02	7.3	92.7	0.0	-0.36	1.25	0.60	0.75	-0.05	11245	1420	8	0	0	0	0	logfile
✔	6S5T	10100	2022-07-03	2019-07-02	4.15	4.28	4.17	4.2	0.007	1.48	3.0	0.09	17.31	0.00	2.450	5.23	3.93	7.1	92.4	0.6	-4.05	0.75	0.84	—	4.2	0.006	0.77	0.0	0.05	15.14	0.00	2.199	11.19	0.00	6.1	93.9	0.0	-0.57	1.49	0.76	0.82	—	6958	896	3	0	1	0	0	logfile
✔	6FAi	4214	2022-07-05	2017-12-15	3.4	3.54	3.40	3.4	0.007	1.06	0.0	0.05	18.30	0.00	1.824	11.75	8.42	8.0	90.5	1.5	-4.21	0.86	0.80	1.54	3.4	0.009	0.91	3.0	0.04	18.49	0.01	1.508	17.85	0.08	4.5	95.5	0.1	-0.55	0.73	0.84	0.75	1.19	84964	5944	39	1775	48	0	0	logfile
✔	6XWQ	10635	2022-07-03	2020-01-24	3.41	4.27	—	4.0	0.003	0.61	0.0	0.04	13.42	0.00	2.171	10.53	0.00	3.5	96.2	0.2	-2.80	0.73	0.80	0.22	4.0	0.003	0.77	0.0	0.04	15.44	0.00	2.161	13.51	0.20	3.3	96.7	0.0	1.14	1.17	0.72	0.84	0.62	9572	1281	6	0	0	0	0	logfile
✔	6UES	20755	2022-07-03	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.10	0.01	1.792	36.17	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	6NAV	0397	2022-07-04	2018-12-06	4.1	4.14	—	4.1	0.005	0.82	0.0	0.06	8.77	0.00	2.245	4.10	0.00	4.7	95.3	0.0	-2.96	0.62	0.82	—	4.1	0.003	0.59	0.0	0.04	11.67	0.00	2.145	7.83	0.00	6.1	93.9	0.0	-0.50	1.54	0.63	0.84	—	18711	2751	21	0	0	0	0	logfile
✔	5FJ8	3178	2022-07-07	2015-10-06	3.9	3.97	—	4.0	0.004	1.21	0.0	0.04	13.54	0.00	2.035	13.99	4.05	16.0	82.9	1.1	-4.73	0.70	0.69	0.95	3.9	0.009	1.08	0.0	0.05	17.05	0.01	1.996	17.26	0.33	13.1	85.7	1.2	-2.68	1.47	0.76	0.77	0.99	39284	4804	25	47	41	0	0	logfile
✘	5XXB	6778	2022-07-05	2017-07-03	3.17	3.22	—	3.2	0.006	1.07	5.0	0.09	17.43	0.00	1.261	4.93	4.74	7.1	91.3	1.5	-3.54	0.65	0.77	2.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	121433	6215	44	3352	0	0	0	logfile
✔	6P4H	20249	2022-07-05	2019-05-27	3.2	3.13	3.20	3.1	0.010	1.43	0.0	0.10	16.95	0.00	2.179	2.65	2.17	6.6	92.8	0.7	-3.62	0.67	0.75	2.61	3.1	0.004	0.65	0.0	0.04	17.57	0.00	2.043	12.09	0.69	4.8	95.1	0.0	-0.71	0.66	0.78	0.81	2.06	79374	4862	36	1900	0	0	0	logfile
✔	6E9Y	9020	2022-07-03	2018-08-01	4.3	4.50	—	4.3	0.008	0.73	0.0	0.04	7.51	0.00	1.433	25.35	0.00	3.1	96.9	0.0	-3.58	0.75	0.80	—	4.3	0.003	0.53	0.0	0.03	11.06	0.00	2.036	9.37	0.00	1.4	98.6	0.0	2.12	1.50	0.76	0.82	—	54450	3405	15	0	0	0	28155	logfile
✔	6J30	9773	2022-07-02	2019-01-03	4.5	4.74	—	4.6	0.002	0.44	0.0	0.04	7.35	0.00	2.093	8.68	0.07	6.4	93.4	0.3	-3.38	0.86	0.72	—	4.5	0.003	0.77	0.0	0.04	12.20	0.00	1.947	21.60	0.00	5.6	94.1	0.3	-0.99	1.91	0.89	0.77	—	106227	13504	47	0	0	0	0	logfile
✔	6XYQ	10652	2022-07-03	2020-01-30	3.09	3.30	2.79	3.3	0.007	0.71	0.0	0.05	12.97	0.00	2.130	9.08	0.00	3.5	96.5	0.0	-4.52	0.46	0.84	3.97	3.3	0.004	0.55	0.0	0.05	15.09	0.00	2.232	8.09	0.82	2.3	97.7	0.0	-3.28	0.44	0.47	0.86	4.77	4955	725	10	0	0	0	0	logfile
✔	6KLW	0720	2022-07-05	2019-07-30	2.9	3.04	—	3.0	0.005	0.66	0.0	0.05	13.67	0.00	2.135	6.80	0.00	6.5	93.5	0.0	-3.60	0.75	0.86	3.81	3.0	0.003	0.56	0.0	0.04	16.32	0.00	2.139	6.28	1.57	5.8	94.2	0.0	-0.80	0.44	0.73	0.86	3.39	25179	3238	15	0	14	0	0	logfile
✔	5YWC	6852	2022-07-08	2017-11-29	4.3	4.48	4.24	4.3	0.004	0.80	0.0	0.04	14.47	0.00	2.030	14.78	7.97	4.4	95.3	0.4	-1.76	0.66	0.75	—	4.3	0.004	0.75	0.0	0.04	12.95	0.00	1.943	15.75	0.00	4.3	95.7	0.1	0.97	3.33	0.68	0.79	—	51108	6588	16	0	20	0	0	logfile
✔	6G51	4350	2022-07-08	2018-03-28	4.1	4.42	—	4.0	0.007	1.44	22.0	0.10	21.21	0.00	0.264	3.79	0.00	7.0	92.3	0.8	-2.90	0.71	0.63	—	3.9	0.004	0.75	0.0	0.04	21.98	0.00	1.945	9.45	0.00	12.1	87.8	0.1	-1.57	1.59	0.81	0.69	—	50662	6237	38	1659	0	0	0	logfile

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