Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6SKY	10231	2022-12-14	2019-08-16	2.8	2.95	—	3.0	0.009	0.69	0.0	0.05	13.80	0.00	2.077	5.12	3.63	4.2	95.8	0.0	-2.12	0.75	0.85	2.69	3.0	0.003	0.52	0.0	0.04	16.48	0.00	2.102	5.19	2.81	2.1	97.9	0.0	1.58	2.20	0.73	0.85	2.38	22348	2824	4	0	4	0	0	logfile
✔	5YWC	6852	2022-12-22	2017-11-29	4.3	4.48	4.24	4.3	0.004	0.80	0.0	0.04	14.47	0.00	2.030	14.78	7.97	4.4	95.3	0.4	-1.76	0.66	0.75	—	4.3	0.005	0.76	0.0	0.04	12.97	0.00	1.946	16.65	0.00	5.2	94.8	0.1	0.76	3.33	0.68	0.79	—	51108	6588	16	0	20	0	0	logfile
✘	6RKV	4912	2022-12-18	2019-04-30	4.6	4.86	—	4.5	0.002	0.53	0.0	0.04	12.80	0.00	2.207	7.23	0.00	5.3	94.7	0.0	-1.73	0.87	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15460	1784	8	64	0	0	0	logfile
✔	5MBV	3460	2022-12-15	2016-11-08	3.8	4.14	—	3.8	0.002	0.51	0.0	0.04	10.21	0.00	2.172	7.15	0.74	4.7	95.2	0.1	-3.37	0.87	0.81	0.98	3.8	0.004	0.73	0.0	0.04	13.53	0.00	2.112	12.67	0.16	4.2	95.8	0.1	1.02	0.91	0.88	0.83	1.40	24118	3014	5	0	0	0	0	logfile
✔	6o84	0650	2022-12-11	2019-03-08	3.92	4.04	—	4.0	0.005	0.84	0.0	0.05	14.01	0.00	2.350	2.97	0.64	4.9	95.1	0.0	-5.68	0.60	0.82	2.21	4.0	0.003	0.74	0.0	0.04	16.21	0.00	2.150	8.65	0.64	5.2	94.8	0.0	1.37	1.29	0.60	0.82	2.24	6224	712	2	0	118	0	0	logfile
✔	6XYP	10651	2022-12-11	2020-01-30	3.29	3.37	3.04	3.4	0.008	0.64	0.0	0.05	13.98	0.00	2.151	8.09	0.00	2.8	97.2	0.0	-5.04	0.47	0.84	4.49	3.4	0.006	0.62	0.0	0.05	15.80	0.00	2.188	4.94	0.20	2.4	97.6	0.0	-3.45	0.35	0.47	0.84	5.05	4955	725	10	0	0	0	0	logfile
✔	6XYQ	10652	2022-12-11	2020-01-30	3.09	3.30	2.79	3.3	0.007	0.71	0.0	0.05	12.97	0.00	2.130	9.08	0.00	3.5	96.5	0.0	-4.52	0.46	0.84	3.97	3.3	0.004	0.55	0.0	0.05	15.09	0.00	2.232	8.09	0.82	2.3	97.7	0.0	-3.28	0.44	0.47	0.85	4.77	4955	725	10	0	0	0	0	logfile
✔	6KFG	9972	2022-12-14	2019-07-07	3.8	3.91	—	3.9	0.007	0.77	0.0	0.05	14.04	0.00	2.148	13.10	0.67	11.5	88.5	0.0	-4.38	0.63	0.82	1.64	3.9	0.004	0.77	0.0	0.04	16.57	0.00	2.157	13.06	0.92	8.7	91.3	0.0	-0.44	1.36	0.63	0.81	1.60	22264	2704	8	0	0	0	0	logfile
✔	6NYB	0541	2022-12-12	2019-02-11	4.1	4.15	—	4.0	0.014	1.76	3.0	0.09	14.33	0.00	2.070	7.08	3.66	5.4	94.4	0.2	-3.02	0.75	0.74	—	4.0	0.003	0.77	0.0	0.04	13.92	0.00	1.951	12.41	0.00	3.4	96.6	0.0	0.26	2.60	0.78	0.80	—	8842	1097	6	0	6	0	0	logfile
✔	6XYo	10650	2022-12-11	2020-01-30	2.6	2.79	2.31	2.7	0.008	0.74	0.0	0.06	12.93	0.00	2.300	5.78	0.93	2.6	97.4	0.0	-2.90	0.46	0.89	5.98	2.7	0.005	0.56	0.0	0.05	18.01	0.00	2.263	4.36	1.48	3.2	96.8	0.0	-1.79	0.96	0.48	0.91	4.66	5490	800	10	0	0	0	0	logfile
✔	6P4H	20249	2022-12-15	2019-05-27	3.2	3.13	3.20	3.1	0.010	1.43	0.0	0.10	16.95	0.00	2.179	2.65	2.17	6.6	92.8	0.7	-3.62	0.67	0.75	2.61	3.1	0.006	0.76	0.0	0.04	17.67	0.01	1.956	12.47	0.91	5.7	94.3	0.0	-0.91	0.66	0.78	0.82	2.02	79374	4862	36	1900	0	0	0	logfile
✔	6MWQ	9277	2022-12-14	2018-10-30	3.0	3.33	2.89	3.1	0.001	0.36	0.0	0.04	4.66	0.00	2.321	4.19	0.13	11.0	87.5	1.5	-4.81	0.54	0.39	0.22	3.1	0.003	0.70	0.0	0.04	13.25	0.00	2.183	8.34	1.48	3.6	96.1	0.2	-1.09	1.31	0.77	0.86	1.70	22072	2873	8	0	0	0	0	logfile
✔	3J9C	6224	2022-12-15	2014-12-25	2.9	3.02	—	3.1	0.005	1.11	0.0	0.05	14.41	0.00	0.248	26.65	6.13	4.8	95.2	0.0	-0.81	0.69	0.79	2.57	3.0	0.006	0.91	3.0	0.05	16.54	0.01	1.702	20.56	3.00	4.6	95.3	0.1	0.04	0.99	0.72	0.84	2.98	26624	3384	8	0	16	0	0	logfile
✔	5Z3V	6883	2022-12-13	2018-01-08	4.22	3.73	—	3.7	0.004	0.63	0.0	0.04	23.01	0.00	2.160	13.07	0.00	7.8	92.2	0.0	-2.72	0.69	0.74	—	3.7	0.003	0.63	0.0	0.04	24.49	0.00	2.166	11.34	0.09	4.7	95.2	0.1	0.59	0.85	0.70	0.73	—	16758	1339	12	292	3	0	0	logfile
✔	6MHQ	9116	2022-12-16	2018-09-18	3.4	3.50	—	3.5	0.018	0.80	0.0	0.08	12.18	0.00	2.210	6.75	3.14	5.8	94.2	0.0	-1.67	0.73	0.83	2.60	3.5	0.002	0.49	0.0	0.04	15.39	0.00	2.088	11.34	0.84	5.0	95.0	0.0	2.21	1.06	0.72	0.86	2.42	32640	2124	12	0	0	0	15264	logfile
✔	5H1Q	9570	2022-12-15	2016-10-11	3.3	3.90	—	4.0	0.008	1.04	0.0	0.06	11.65	0.00	1.998	16.22	0.31	12.6	86.8	0.6	-5.07	0.44	0.69	3.01	3.9	0.003	0.80	0.0	0.04	16.35	0.00	2.155	9.62	1.36	9.8	89.7	0.6	-0.26	0.83	0.55	0.79	1.87	23784	2888	8	0	0	0	0	logfile
✔	6SB3	10134	2022-12-15	2019-07-18	3.5	3.63	3.51	3.7	0.002	0.56	0.0	0.04	12.95	0.00	2.104	13.36	0.00	4.9	95.1	0.0	-2.84	0.68	0.71	1.27	3.7	0.005	0.71	0.0	0.05	16.11	0.01	2.025	19.45	0.76	8.0	92.0	0.0	-1.75	1.63	0.71	0.77	0.99	75712	9664	32	0	32	0	0	logfile
✔	6SEF	10154	2022-12-12	2019-07-29	3.7	4.25	—	3.6	0.007	0.85	0.0	0.05	27.92	0.00	2.225	4.94	0.00	2.7	97.3	0.0	-2.10	0.88	0.84	2.28	3.5	0.006	0.76	0.0	0.04	29.08	0.00	2.045	19.77	1.13	2.9	97.1	0.0	0.51	0.71	0.89	0.85	1.80	11919	751	11	290	0	0	0	logfile
✔	6UPH	20839	2022-12-12	2019-10-17	2.7	3.01	2.85	3.0	0.007	0.67	0.0	0.04	26.16	0.00	2.216	4.43	0.00	1.8	98.2	0.0	-5.67	0.70	0.87	4.13	3.0	0.005	0.62	0.0	0.04	27.56	0.00	2.106	4.02	1.13	1.1	98.9	0.0	1.10	0.35	0.66	0.87	2.38	10677	732	10	238	0	0	0	logfile
✔	6KLC	0706	2022-12-12	2019-07-30	3.9	3.97	—	3.9	0.003	0.70	0.0	0.04	13.24	0.00	2.198	11.06	0.64	9.3	90.5	0.2	-3.27	0.73	0.77	1.53	3.9	0.004	0.81	0.0	0.05	16.14	0.00	2.094	13.94	0.56	10.2	89.8	0.1	-0.58	1.54	0.74	0.78	1.11	11210	1436	1	0	1	0	0	logfile

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