Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6VQ8	21319	2022-05-13	2020-02-04	3.9	4.52	—	4.2	0.009	0.97	0.0	0.06	10.70	0.00	2.220	3.91	0.78	2.5	97.3	0.2	0.61	0.78	0.73	1.33	4.2	0.005	0.87	0.0	0.05	14.37	0.01	2.011	21.51	0.41	4.2	95.7	0.0	0.82	2.77	0.81	0.81	1.06	60714	8451	35	0	1	0	0	logfile
✔	6WLB	21820	2022-05-16	2020-04-19	3.5	3.89	—	3.8	0.004	0.56	0.0	0.06	13.08	0.00	2.123	6.89	0.16	4.2	95.8	0.0	1.33	0.66	0.78	1.05	3.8	0.003	0.57	0.0	0.06	14.48	0.01	2.021	7.18	0.21	5.5	94.5	0.0	1.30	1.20	0.64	0.79	1.68	34441	2160	6	0	15	0	16960	logfile
✔	6MRD	9196	2022-05-16	2018-10-12	3.82	4.44	—	3.9	0.008	0.88	0.0	0.07	10.50	0.00	1.941	43.72	0.00	9.7	90.1	0.2	-2.91	0.90	0.86	1.24	3.9	0.006	0.74	1.0	0.07	11.48	0.00	1.717	64.75	0.17	10.0	89.9	0.1	-0.02	0.53	0.90	0.87	1.11	34517	4396	21	0	14	0	1477	logfile
✔	6SKi	10225	2022-05-12	2019-08-15	2.6	2.97	2.57	2.9	0.004	0.72	0.0	0.04	16.20	0.00	2.210	8.64	1.29	1.6	98.4	0.0	-0.80	0.63	0.83	4.83	2.9	0.003	0.55	0.0	0.04	16.67	0.00	2.267	7.50	1.94	3.1	96.9	0.0	0.90	0.51	0.63	0.84	4.48	4434	569	2	0	0	0	0	logfile
✔	6XCM	22127	2022-05-15	2020-06-08	3.42	3.84	—	3.6	0.008	0.73	0.0	0.05	15.64	0.00	2.068	15.56	8.41	11.6	88.3	0.1	-4.31	0.79	0.85	2.08	3.6	0.004	0.65	0.0	0.04	15.76	0.00	2.095	11.77	0.46	6.7	93.2	0.0	-1.66	0.48	0.77	0.86	1.93	26772	3390	23	0	59	0	0	logfile
✔	6XCN	22128	2022-05-16	2020-06-08	3.66	3.89	—	3.7	0.011	0.90	0.0	0.05	14.05	0.00	2.117	15.11	1.08	10.2	89.8	0.0	-4.10	0.78	0.87	2.22	3.7	0.005	0.76	0.0	0.04	15.08	0.00	2.053	9.90	0.07	5.3	94.7	0.0	-1.13	0.99	0.77	0.86	1.63	28662	3636	27	0	60	0	0	logfile
✔	6XTX	10619	2022-05-17	2020-01-16	3.29	3.53	3.30	3.4	0.009	0.79	0.0	0.05	14.41	0.00	2.008	10.52	0.11	10.9	89.1	0.0	-5.12	0.81	0.85	2.25	3.4	0.004	0.65	0.0	0.04	15.87	0.00	1.929	8.14	0.31	5.8	94.2	0.0	-1.83	1.61	0.81	0.85	1.70	40834	5058	18	11	13	0	0	logfile
✔	6oQW	20172	2022-05-17	2019-04-29	3.1	3.49	—	3.3	0.005	0.82	5.0	0.05	14.42	0.00	1.924	4.66	1.75	3.3	96.6	0.1	-2.30	0.77	0.83	2.57	3.3	0.004	0.69	0.0	0.04	15.87	0.00	1.933	8.53	0.24	3.4	96.6	0.0	0.72	0.78	0.79	0.89	2.54	36901	4847	28	0	12	0	0	logfile
✔	6SK0	10219	2022-05-12	2019-08-14	2.3	2.30	2.11	2.2	0.008	0.74	0.0	0.05	15.85	0.00	2.202	9.23	0.97	3.3	96.7	0.0	-1.30	0.70	0.83	6.89	2.2	0.005	0.72	0.0	0.05	17.22	0.00	2.164	10.52	0.65	4.5	95.5	0.0	-1.28	1.50	0.80	0.90	6.82	5826	792	3	0	0	0	0	logfile
✔	6PQV	20454	2022-05-17	2019-07-10	3.3	3.54	—	3.4	0.009	0.93	1.0	0.05	14.70	0.00	1.757	4.51	2.58	3.6	96.3	0.0	-2.75	0.75	0.86	3.27	3.4	0.003	0.69	0.0	0.04	15.86	0.00	1.963	8.90	0.39	2.4	97.6	0.0	0.52	1.29	0.77	0.88	2.55	36971	4851	28	0	12	0	0	logfile
✔	6oQR	20167	2022-05-17	2019-04-29	3.1	3.49	—	3.3	0.010	0.90	3.0	0.05	14.75	0.00	1.753	4.66	2.50	3.5	96.5	0.0	-2.47	0.77	0.86	3.56	3.3	0.003	0.69	0.0	0.04	15.90	0.00	1.967	8.61	0.23	2.9	97.1	0.0	0.53	1.27	0.79	0.89	2.47	36951	4849	28	0	12	0	0	logfile
✔	6oQV	20171	2022-05-17	2019-04-29	3.3	3.60	—	3.4	0.010	0.94	1.0	0.05	14.75	0.00	1.740	5.27	2.95	4.1	95.9	0.0	-2.77	0.76	0.85	3.07	3.4	0.003	0.69	0.0	0.04	15.69	0.00	1.933	8.23	0.23	2.7	97.3	0.0	0.90	1.99	0.79	0.88	2.33	36971	4851	28	0	12	0	0	logfile
✔	6KPK	0749	2022-05-13	2019-08-15	2.3	3.44	—	3.0	0.006	0.71	0.0	0.06	12.55	0.00	2.127	4.93	0.37	5.5	94.5	0.0	-3.66	0.84	0.88	4.21	3.2	0.003	0.72	1.0	0.13	14.45	0.00	2.010	5.11	0.62	3.6	96.4	0.0	1.15	0.76	0.84	0.89	4.11	62209	3936	24	0	24	0	31225	logfile
✔	6oQU	20170	2022-05-17	2019-04-29	3.2	3.50	—	3.3	0.009	0.93	2.0	0.05	14.95	0.00	1.718	4.70	2.92	3.5	96.5	0.0	-2.70	0.75	0.86	3.08	3.3	0.005	0.72	0.0	0.04	15.80	0.01	1.860	8.70	0.39	2.8	97.2	0.0	0.51	0.66	0.78	0.89	2.35	36971	4851	28	0	12	0	0	logfile
✔	6VoA	21259	2022-05-15	2020-01-30	4.0	4.24	—	4.1	0.004	0.83	8.0	0.06	14.09	0.00	1.107	13.97	1.57	8.8	90.7	0.5	-3.28	0.69	0.58	—	4.1	0.007	0.80	0.0	0.04	16.17	0.00	2.188	14.25	0.67	7.9	92.1	0.1	-1.17	2.40	0.77	0.69	—	26824	3958	9	0	0	0	0	logfile
✔	6oQS	20168	2022-05-17	2019-04-29	3.3	3.55	—	3.4	0.008	0.85	0.0	0.05	14.37	0.00	1.849	5.70	1.80	2.5	97.5	0.0	-2.20	0.76	0.86	3.40	3.4	0.003	0.67	0.0	0.04	15.90	0.00	1.977	8.82	0.23	2.5	97.5	0.0	0.61	1.67	0.78	0.89	2.45	36971	4851	28	0	12	0	0	logfile
✔	6oQT	20169	2022-05-17	2019-04-29	3.1	3.48	—	3.3	0.008	0.86	1.0	0.05	14.36	0.00	1.781	3.86	1.96	2.9	97.1	0.0	-2.11	0.78	0.88	3.44	3.3	0.003	0.64	0.0	0.04	15.72	0.00	1.967	7.01	0.34	2.4	97.6	0.0	0.89	1.24	0.79	0.89	2.51	36971	4851	28	0	12	0	0	logfile
✔	6KQK	0753	2022-05-13	2019-08-18	2.17	3.14	—	2.8	0.018	1.15	12.0	0.06	15.47	0.00	1.876	11.30	0.00	7.4	92.6	0.0	-4.38	0.82	0.84	4.45	2.8	0.004	0.73	4.0	0.12	16.21	0.00	1.757	9.64	0.72	4.4	95.6	0.0	0.10	0.80	0.82	0.86	4.10	63373	3936	24	0	48	0	31225	logfile
✔	6WU3	21904	2022-05-13	2020-05-04	3.16	3.62	3.40	3.5	0.008	0.60	0.0	0.04	15.89	0.00	2.057	9.10	6.27	8.4	91.6	0.0	-3.62	0.61	0.85	2.96	3.6	0.004	0.58	0.0	0.03	15.93	0.00	2.035	8.73	0.57	6.0	94.0	0.0	1.00	1.85	0.60	0.87	2.53	13610	890	2	0	0	0	6936	logfile
✔	6WU2	21903	2022-05-14	2020-05-04	3.36	3.76	3.55	3.7	0.010	0.77	0.0	0.05	14.78	0.00	2.074	6.99	0.76	7.8	92.0	0.2	-3.14	0.61	0.86	3.65	3.7	0.003	0.57	0.0	0.04	15.83	0.00	2.021	7.89	0.00	6.2	93.6	0.2	0.82	0.62	0.60	0.87	2.81	15404	978	4	0	10	0	7812	logfile

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