Table showing results for April 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6TRE	10560	2021-04-04	2019-12-18	3.3	3.45	3.26	3.4	0.009	0.89	0.0	0.04	14.70	0.00	2.016	18.36	11.33	10.3	89.7	0.0	-3.34	0.72	0.78	2.68	3.4	0.004	0.68	0.0	0.04	13.30	0.00	2.181	10.61	0.47	6.7	93.3	0.0	-1.16	1.07	0.72	0.79	3.35	38176	4832	32	0	0	0	0	logfile
✔	6VQH	21350	2021-04-02	2020-02-05	4.4	4.72	—	4.6	0.008	1.00	0.0	0.07	11.13	0.00	2.336	5.07	2.06	2.6	97.2	0.2	0.63	0.64	0.67	—	4.6	0.004	0.79	0.0	0.04	11.98	0.00	2.055	17.24	0.00	3.0	97.0	0.0	1.66	1.11	0.68	0.73	—	19338	2813	18	0	0	0	0	logfile
✔	6CB1	7445	2021-04-01	2018-02-01	4.6	4.77	—	4.6	0.006	1.02	0.0	0.06	16.94	0.00	0.266	5.93	0.00	5.0	94.8	0.1	-2.68	0.66	0.49	—	4.5	0.006	0.88	0.0	0.05	19.11	0.00	1.996	27.02	0.00	12.5	87.4	0.0	-2.10	2.58	0.75	0.77	—	69945	6459	42	1615	694	0	0	logfile
✔	6VQB	21347	2021-04-04	2020-02-04	3.6	3.97	—	3.9	0.010	0.89	0.0	0.06	10.80	0.00	2.221	1.36	0.05	2.6	97.2	0.2	0.25	0.69	0.75	1.92	3.9	0.003	0.62	0.0	0.04	13.66	0.00	2.161	9.45	0.03	3.0	97.0	0.0	1.18	1.42	0.75	0.82	1.85	36113	4578	17	0	1	0	0	logfile
✔	5H0R	9564	2021-04-02	2016-10-06	3.9	3.72	—	3.7	0.008	0.81	0.0	0.05	10.30	0.00	1.744	19.65	0.28	8.5	91.4	0.1	-4.11	0.33	0.70	1.99	3.7	0.003	0.65	0.0	0.04	13.14	0.00	2.115	13.63	0.00	6.7	93.2	0.1	-0.70	1.68	0.37	0.75	2.43	15037	1656	4	84	0	0	0	logfile
✔	6XQo	22291	2021-04-01	2020-07-09	3.1	3.54	—	3.5	0.004	0.57	0.0	0.04	15.61	0.00	1.956	9.44	3.52	4.4	95.6	0.0	-2.83	0.76	0.75	2.70	3.5	0.003	0.61	0.0	0.04	13.88	0.00	2.196	8.47	0.00	2.4	97.6	0.0	0.49	0.71	0.78	0.77	1.92	4301	560	4	0	4	0	0	logfile
✔	6SLU	10240	2021-04-01	2019-08-20	4.7	4.88	4.61	4.8	0.003	0.64	0.0	0.04	9.23	0.00	1.454	9.68	0.18	1.3	98.7	0.0	-1.03	0.69	0.77	—	4.7	0.004	0.88	0.0	0.05	13.52	0.01	2.162	18.25	0.00	3.6	96.4	0.0	-0.27	1.82	0.72	0.81	—	10336	1320	6	0	0	0	0	logfile
✔	6SKK	10226	2021-04-01	2019-08-15	3.6	3.76	3.63	3.7	0.003	0.61	0.0	0.04	12.96	0.00	2.319	7.50	0.18	1.7	98.3	0.0	-1.14	0.70	0.75	1.70	3.7	0.004	0.68	0.0	0.04	14.56	0.01	2.073	11.76	0.18	3.7	96.3	0.0	0.53	0.75	0.69	0.76	1.48	10328	1320	6	0	0	0	0	logfile
✔	6V4U	21048	2021-04-01	2019-12-01	3.8	4.31	—	4.1	0.002	0.47	0.0	0.04	9.64	0.00	2.273	4.54	0.00	6.1	93.9	0.0	-3.58	0.73	0.61	1.20	4.1	0.004	0.78	0.0	0.05	11.09	0.00	2.166	13.45	0.00	13.7	86.3	0.0	-1.91	0.96	0.77	0.69	1.74	7074	1106	3	0	0	0	0	logfile
✔	6WJ3	21687	2021-04-01	2020-04-11	3.9	4.46	4.05	4.2	0.007	0.50	0.0	0.04	12.60	0.00	2.210	8.10	0.00	4.7	95.2	0.1	-2.80	0.85	0.76	0.95	4.2	0.002	0.59	0.0	0.04	13.57	0.00	2.209	10.67	0.00	5.0	95.0	0.0	-0.14	1.76	0.86	0.77	1.15	8912	1168	10	1	1	0	0	logfile
✔	6RiQ	4897	2021-04-03	2019-04-24	3.1	3.19	—	3.3	0.006	1.00	0.0	0.05	14.77	0.00	2.001	6.96	0.00	5.2	94.8	0.0	-4.36	0.63	0.78	2.59	3.2	0.004	0.67	0.0	0.05	14.36	0.00	2.009	9.52	0.00	4.6	95.4	0.0	-1.37	1.34	0.66	0.81	2.97	30327	3971	33	0	22	0	0	logfile
✔	5iJ0	8094	2021-04-02	2016-03-01	3.8	4.26	—	4.2	0.004	0.92	0.0	0.04	11.08	0.00	2.090	4.50	0.41	3.9	96.0	0.1	-2.13	0.54	0.75	1.29	4.1	0.005	0.66	0.0	0.04	12.57	0.00	1.822	14.33	0.00	5.6	94.1	0.2	0.00	1.04	0.54	0.80	2.50	13304	856	4	1	2	0	6523	logfile
✔	5iJ9	8095	2021-04-02	2016-03-01	3.7	3.83	—	3.8	0.004	0.93	0.0	0.04	11.20	0.00	2.060	4.27	0.96	5.1	94.7	0.2	-2.08	0.56	0.79	1.81	3.8	0.002	0.56	0.0	0.04	13.11	0.00	1.940	8.85	0.00	4.5	95.3	0.2	0.63	1.07	0.55	0.80	1.87	13309	856	4	1	2	0	6526	logfile
✔	6CVJ	7769	2021-04-17	2018-03-28	3.2	3.65	—	3.6	0.002	0.50	0.0	0.04	11.46	0.00	0.276	9.70	0.54	2.5	97.5	0.0	-0.77	0.54	0.61	1.59	3.6	0.004	0.67	0.0	0.05	13.93	0.00	1.965	13.24	0.06	2.8	97.2	0.0	0.74	2.20	0.61	0.83	2.47	310320	39240	210	60	60	0	0	logfile
✔	5T0C	8332	2021-04-15	2016-08-15	3.8	3.87	—	4.0	0.005	0.96	2.0	0.05	11.94	0.00	0.352	23.55	0.16	8.0	91.2	0.9	-4.16	0.66	0.59	0.56	3.7	0.003	0.87	2.0	0.04	13.75	0.00	2.003	17.86	0.01	5.9	93.7	0.5	-0.82	3.84	0.60	0.51	0.57	155574	19846	78	0	14	0	0	logfile
✔	6KLD	0707	2021-04-02	2019-07-30	3.58	3.65	—	3.6	0.004	0.77	1.0	0.05	14.10	0.00	1.906	11.00	0.86	10.8	88.8	0.4	-3.64	0.72	0.81	1.60	3.6	0.003	0.71	0.0	0.04	13.82	0.00	1.876	8.83	0.00	10.1	89.9	0.1	-0.83	1.46	0.73	0.81	1.84	12466	1587	1	0	2	0	0	logfile
✔	6SAG	10130	2021-04-05	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.003	0.62	0.0	0.04	15.22	0.01	2.044	2.91	1.22	3.2	96.8	0.0	1.50	0.73	0.59	0.88	6.92	54080	6120	240	120	240	2840	0	logfile
✔	6UXB	20932	2021-04-01	2019-11-07	4.9	5.50	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.627	0.00	0.00	3.8	96.2	0.0	-2.56	0.74	0.69	—	6.0	0.002	0.58	0.0	0.05	2.95	0.00	2.400	2.26	0.00	1.9	98.1	0.0	2.93	2.33	0.76	0.73	—	10344	2104	8	0	0	0	0	logfile
✔	6W62	21551	2021-04-01	2020-03-16	3.9	4.04	—	4.0	0.003	0.64	1.0	0.04	14.23	0.00	1.883	15.94	0.00	10.2	89.4	0.3	-2.04	0.71	0.67	1.02	4.0	0.003	0.72	0.0	0.04	14.99	0.01	2.185	14.74	0.00	10.0	90.0	0.0	-1.86	1.25	0.72	0.68	0.92	7387	910	2	24	0	0	0	logfile
✔	7BZ2	30249	2021-04-01	2020-04-26	3.82	3.99	—	3.9	0.004	0.66	0.0	0.05	14.77	0.00	2.101	12.28	0.00	10.2	89.8	0.0	-6.04	0.73	0.79	2.10	3.9	0.003	0.63	0.0	0.04	14.41	0.00	2.163	10.61	0.00	5.9	94.1	0.0	-2.65	2.43	0.72	0.77	1.73	7393	978	5	0	1	0	0	logfile

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