Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CY9	27071	2023-04-28	2022-05-23	2.9	3.60	3.07	3.3	0.002	0.51	0.0	0.04	13.25	0.00	2.199	6.57	0.19	3.8	96.1	0.1	0.62	0.78	0.81	1.75	3.3	0.005	0.60	0.0	0.04	14.78	0.00	2.126	10.23	1.20	4.9	95.1	0.1	0.07	1.59	0.78	0.82	2.20	28469	3663	6	0	0	0	0	logfile
✔	7oQY	13034	2023-04-28	2021-06-04	2.61	2.96	2.55	2.9	0.020	0.88	0.0	0.20	13.68	0.00	1.842	4.99	0.00	2.9	97.1	0.0	-0.33	0.67	0.82	3.68	2.9	0.005	0.81	0.0	0.05	16.31	0.00	1.531	4.92	1.06	3.0	97.0	0.0	-0.38	0.30	0.66	0.84	3.47	28032	3535	20	0	10	0	0	logfile
✔	7ZR6	14884	2023-04-24	2022-05-03	4.2	2.74	4.56	3.4	0.003	0.79	0.0	0.05	14.37	0.00	2.106	16.41	0.00	7.7	92.0	0.3	-1.90	0.65	0.64	—	2.3	0.003	0.72	0.0	0.04	14.74	0.01	2.144	13.07	0.05	8.1	91.7	0.2	-1.57	1.10	0.69	0.63	—	17700	2168	7	0	2	0	0	logfile
✔	7WE8	32442	2023-04-28	2021-12-23	3.5	4.24	—	4.0	0.004	0.66	0.0	0.05	13.21	0.00	1.600	10.93	0.26	5.5	94.4	0.1	-1.57	0.83	0.82	1.52	4.0	0.004	0.67	0.0	0.04	14.93	0.00	2.143	12.98	0.29	6.5	93.4	0.1	-1.43	1.60	0.83	0.83	1.43	28585	3522	27	0	69	0	0	logfile
✔	6WKR	21707	2023-04-29	2020-04-16	3.5	4.83	3.93	3.6	0.010	0.93	0.0	0.05	23.99	0.00	1.921	28.51	0.31	11.7	88.3	0.0	-4.79	0.91	0.86	1.18	3.6	0.004	0.70	0.0	0.04	24.18	0.00	1.992	15.80	0.13	5.8	94.2	0.0	-0.88	0.53	0.91	0.85	0.99	29296	3018	21	314	2	0	0	logfile
✔	8A2Y	15108	2023-04-23	2022-06-06	2.15	2.21	2.10	2.2	0.005	0.61	0.0	0.05	13.42	0.00	2.177	2.39	0.64	1.9	98.1	0.0	-1.01	0.72	0.87	6.39	2.2	0.003	0.62	0.0	0.05	15.79	0.00	2.140	4.05	0.58	1.1	98.9	0.0	0.97	0.83	0.72	0.89	6.11	15078	1835	15	0	15	528	0	logfile
✔	6JD1	9801	2023-04-22	2019-01-30	3.38	4.55	—	3.9	0.013	1.00	0.0	0.05	14.90	0.00	2.005	6.39	0.00	7.3	92.7	0.0	-4.95	0.85	0.70	1.18	4.0	0.005	0.66	0.0	0.04	15.75	0.00	1.770	17.72	0.50	8.6	91.4	0.0	-2.50	1.31	0.88	0.85	1.75	63427	3953	36	0	60	192	31469	logfile
✔	8F6i	28884	2023-04-21	2022-11-16	4.03	4.27	4.04	4.2	0.002	0.50	0.0	0.04	13.67	0.00	2.070	7.30	0.00	5.0	94.9	0.2	0.18	0.76	0.80	—	4.2	0.005	0.67	0.0	0.04	14.02	0.00	1.940	12.72	0.18	6.7	93.3	0.1	0.05	0.43	0.77	0.81	—	10367	1351	8	0	6	0	0	logfile
✔	7SZ7	25563	2023-04-22	2021-11-25	3.4	4.38	—	3.7	0.005	0.79	0.0	0.05	14.43	0.00	1.707	9.79	1.81	11.0	88.6	0.4	-4.49	0.86	0.78	2.38	3.7	0.003	0.68	0.0	0.04	15.15	0.00	2.210	11.74	0.17	9.1	90.8	0.1	-2.04	0.56	0.92	0.88	2.36	10218	1328	4	0	0	0	0	logfile
✔	7BH9	12187	2023-04-20	2021-01-11	2.9	3.58	2.91	3.4	0.007	0.77	0.0	0.05	13.27	0.00	2.021	5.17	0.33	4.9	95.1	0.0	-3.10	0.85	0.88	3.70	3.4	0.002	0.54	0.0	0.04	15.07	0.00	2.180	2.80	1.33	1.9	98.1	0.0	0.68	0.39	0.80	0.83	2.63	5876	730	3	0	4	0	0	logfile
✔	7VF5	31947	2023-04-22	2021-09-10	3.0	3.69	—	3.6	0.003	0.64	0.0	0.04	14.39	0.00	2.182	8.35	0.00	2.8	97.2	0.0	0.56	0.68	0.77	1.64	3.6	0.005	0.69	0.0	0.04	16.81	0.00	2.169	9.52	1.42	3.4	96.6	0.0	1.07	0.92	0.65	0.78	1.62	12313	1556	3	0	0	0	0	logfile
✔	8CY7	27069	2023-04-20	2022-05-23	2.9	3.84	3.06	3.3	0.003	0.76	10.0	0.17	12.25	0.00	2.018	5.28	0.26	3.7	96.1	0.1	0.96	0.83	0.76	2.16	3.3	0.004	0.78	10.0	0.17	13.26	0.00	1.970	7.67	0.66	5.2	94.7	0.1	0.39	1.21	0.84	0.79	2.45	54932	3513	21	0	74	0	26549	logfile
✔	7o72	12743	2023-04-27	2021-04-12	3.4	3.66	3.39	3.4	0.002	0.47	1.0	0.04	14.35	0.00	1.971	4.02	0.03	2.2	97.8	0.0	1.40	0.86	0.83	1.86	3.4	0.004	0.70	0.0	0.04	16.91	0.00	1.985	11.98	0.23	3.6	96.4	0.0	0.58	0.85	0.87	0.86	1.60	73664	8867	43	130	22	0	0	logfile
✔	8CYC	27074	2023-04-28	2022-05-23	2.9	3.44	2.92	3.2	0.002	0.53	0.0	0.04	13.71	0.00	2.186	8.20	0.16	5.4	94.3	0.3	-0.06	0.74	0.71	1.18	3.2	0.008	0.79	0.0	0.05	15.75	0.00	2.062	17.01	3.06	8.2	91.6	0.2	-1.16	0.55	0.76	0.77	1.84	28697	3677	6	0	0	0	0	logfile
✔	7oK0	12960	2023-04-27	2021-05-17	2.9	3.35	2.78	3.2	0.021	0.93	0.0	0.22	12.91	0.00	2.038	5.46	0.00	3.7	96.3	0.0	0.12	0.78	0.85	3.19	3.2	0.006	0.81	0.0	0.05	15.28	0.00	1.778	6.64	1.17	4.5	95.5	0.0	0.01	0.31	0.78	0.87	3.09	25636	3234	18	0	8	0	0	logfile
✔	8CXQ	27067	2023-04-20	2022-05-22	2.3	3.31	2.77	3.1	0.002	0.46	0.0	0.04	10.31	0.00	2.008	5.61	0.22	3.9	96.0	0.1	0.30	0.78	0.80	2.66	3.1	0.004	0.53	1.0	0.04	12.19	0.00	1.888	6.75	0.69	4.8	95.1	0.0	-0.13	0.39	0.73	0.76	2.52	56384	3666	6	0	0	0	27792	logfile
✔	7QVM	14180	2023-04-20	2022-01-21	3.25	3.83	—	3.6	0.003	0.64	0.0	0.04	12.94	0.00	2.156	11.45	0.00	3.6	96.4	0.0	0.22	0.72	0.78	2.24	3.6	0.003	0.66	0.0	0.04	15.69	0.00	2.108	13.69	0.11	3.4	96.6	0.0	0.45	0.80	0.72	0.80	1.63	8528	1094	6	0	1	0	0	logfile
✔	7CRB	30449	2023-04-20	2020-08-13	3.16	3.51	—	3.4	0.005	0.81	2.0	0.05	13.84	0.00	2.288	8.58	0.77	8.8	91.2	0.0	-2.29	0.75	0.82	3.00	3.4	0.003	0.63	0.0	0.04	15.65	0.00	2.258	9.16	0.13	7.2	92.8	0.0	-1.12	1.16	0.71	0.81	2.71	6806	851	2	0	0	0	0	logfile
✔	7XC6	33113	2023-04-23	2022-03-23	2.79	2.93	2.77	3.0	0.006	0.72	0.0	0.05	17.67	0.00	2.003	7.10	7.75	7.1	92.9	0.0	-2.40	0.63	0.67	0.82	2.9	0.003	0.59	0.0	0.04	18.05	0.00	2.090	8.29	1.61	6.0	94.0	0.0	0.03	0.82	0.75	0.91	3.32	16176	2026	5	0	0	0	0	logfile
✔	7TD6	25824	2023-04-20	2021-12-30	3.0	3.41	3.09	3.4	0.002	0.57	0.0	0.05	16.47	0.00	2.449	7.94	0.00	0.0	100.0	0.0	-3.11	0.42	0.76	2.95	3.4	0.005	0.89	0.0	0.05	18.65	0.00	2.234	13.38	3.53	9.9	90.1	0.0	-4.01	1.10	0.43	0.78	3.81	5575	690	5	0	0	0	0	logfile

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