Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8B64	15862	2023-02-23	2022-09-26	2.589	2.35	2.34	2.5	0.020	4.46	0.0	0.04	20.81	0.00	1.980	8.44	1.19	0.8	99.2	0.0	3.50	0.67	0.88	4.98	2.5	0.004	1.15	0.0	0.04	19.92	0.00	1.956	7.44	1.57	1.1	98.9	0.0	2.97	0.89	0.67	0.90	4.87	21678	2249	66	0	75	0	0	logfile
✔	8DKX	27493	2023-02-17	2022-07-06	3.0	3.53	3.00	3.4	0.005	0.75	1.0	0.05	13.28	0.00	2.099	8.39	0.62	5.5	94.5	0.0	-3.42	0.62	0.84	4.43	3.4	0.003	0.60	0.0	0.04	15.64	0.00	2.169	7.12	2.28	5.1	94.9	0.0	-0.23	0.91	0.56	0.84	3.75	4370	553	3	0	0	0	0	logfile
✔	7M68	23690	2023-02-24	2021-03-25	4.04	4.54	4.34	4.5	0.005	0.75	0.0	0.04	13.49	0.00	2.358	1.05	0.60	5.8	94.2	0.0	-0.08	0.51	0.70	—	4.5	0.003	0.57	0.0	0.04	13.42	0.00	2.019	10.49	0.00	7.4	92.6	0.0	-0.76	1.42	0.52	0.73	—	21806	1390	1	0	0	0	10919	logfile
✔	7SL3	25190	2023-02-22	2021-10-22	3.4	3.65	—	3.5	0.002	0.54	0.0	0.04	13.25	0.00	2.238	8.44	0.32	6.4	93.4	0.2	-0.71	0.80	0.81	2.46	3.5	0.004	0.57	0.0	0.04	14.42	0.00	2.193	9.89	0.13	6.4	93.6	0.0	-0.80	1.14	0.81	0.84	2.59	14016	1736	6	0	0	0	0	logfile
✔	7VAQ	31858	2023-02-27	2021-08-30	3.6	3.18	3.57	3.3	0.003	0.53	0.0	0.04	13.52	0.00	1.066	5.47	0.00	1.8	98.2	0.0	1.14	0.57	0.77	2.21	3.2	0.004	0.61	0.0	0.04	16.58	0.00	1.859	8.32	0.29	3.2	96.8	0.0	0.04	0.74	0.60	0.79	2.18	29558	3788	15	0	6	0	0	logfile
✔	6PiG	20350	2023-02-26	2019-06-26	3.5	3.54	3.59	3.5	0.014	1.75	1.0	0.09	16.07	0.00	2.173	1.98	1.58	15.2	81.4	3.5	-4.85	0.60	0.76	2.54	3.5	0.005	0.87	0.0	0.05	17.22	0.01	2.097	12.08	0.49	17.1	82.3	0.6	-3.03	0.58	0.66	0.80	2.35	28867	3439	11	60	0	0	0	logfile
✔	7Y6S	33646	2023-02-25	2022-06-21	3.1	4.17	3.22	3.3	0.003	0.60	0.0	0.05	14.29	0.00	2.147	9.28	0.31	4.3	95.5	0.1	-0.64	0.86	0.85	2.88	3.3	0.005	0.60	0.0	0.05	15.26	0.00	2.177	9.12	0.19	4.7	95.3	0.0	0.17	0.32	0.86	0.85	2.81	24852	3012	42	0	120	0	0	logfile
✔	7PTU	13638	2023-02-22	2021-09-27	3.87	4.78	3.79	3.9	0.003	0.79	0.0	0.05	13.65	0.00	2.173	9.09	0.26	4.7	95.3	0.0	-1.48	0.81	0.83	1.51	3.9	0.008	0.79	0.0	0.05	14.74	0.00	2.152	17.93	0.31	7.6	92.4	0.0	-1.64	1.29	0.82	0.86	1.33	17035	2370	10	0	5	0	0	logfile
✔	8DKi	27489	2023-02-17	2022-07-05	3.32	3.57	3.29	3.6	0.003	0.64	0.0	0.05	13.79	0.00	2.204	9.78	0.21	4.6	95.4	0.0	-0.62	0.62	0.84	2.61	3.6	0.003	0.62	0.0	0.04	15.85	0.00	2.212	10.59	0.21	6.6	93.4	0.0	-0.10	0.92	0.61	0.86	2.61	4365	552	3	0	0	0	0	logfile
✔	7QTK	14143	2023-02-17	2022-01-14	3.84	4.13	—	4.0	0.004	0.73	1.0	0.05	12.92	0.00	2.182	9.34	0.54	4.9	95.0	0.2	-0.03	0.61	0.79	1.74	4.0	0.003	0.68	0.0	0.05	14.41	0.00	2.205	9.24	0.54	4.7	95.1	0.2	-0.31	0.56	0.61	0.79	1.96	5009	643	4	0	2	0	0	logfile
✔	7RSQ	24677	2023-02-17	2021-08-11	3.8	4.03	3.73	4.1	0.008	0.80	0.0	0.05	12.74	0.00	2.360	4.01	2.88	3.0	97.0	0.0	-0.64	0.63	0.68	1.39	4.1	0.003	0.53	0.0	0.03	15.41	0.00	2.381	3.76	0.48	3.0	97.0	0.0	2.46	1.83	0.64	0.71	1.77	3970	246	1	0	0	0	1958	logfile
✔	7P37	13178	2023-02-21	2021-07-07	2.96	3.18	3.03	3.2	0.005	0.85	0.0	0.05	11.41	0.00	2.280	7.21	0.00	2.4	97.6	0.0	1.79	0.68	0.76	2.89	3.1	0.002	0.50	0.0	0.04	15.53	0.00	2.170	9.70	2.18	2.5	97.5	0.0	1.44	0.92	0.70	0.81	3.10	14496	1764	24	0	36	0	0	logfile
✔	8D1M	27135	2023-02-21	2022-05-27	3.11	3.41	3.10	3.4	0.006	0.87	0.0	0.06	15.34	0.00	2.396	12.79	1.18	2.7	97.1	0.3	1.27	0.63	0.86	3.50	3.4	0.002	0.49	0.0	0.04	16.53	0.00	2.258	7.99	0.00	1.8	98.2	0.0	1.40	0.92	0.61	0.87	2.41	15590	1880	5	0	0	0	0	logfile
✔	7VAL	31849	2023-02-27	2021-08-30	3.1	2.59	2.99	2.9	0.003	0.55	0.0	0.04	12.97	0.00	1.776	3.43	0.00	1.5	98.5	0.0	1.44	0.56	0.80	3.46	2.9	0.003	0.59	0.0	0.04	16.08	0.00	1.896	5.72	0.13	2.2	97.8	0.0	0.55	0.57	0.66	0.87	3.41	29558	3788	15	0	6	0	0	logfile
✘	6SNH	10257	2023-02-19	2019-08-24	3.9	4.16	—	3.9	0.008	1.24	1.0	0.06	14.34	0.00	2.181	19.63	1.49	11.0	88.9	0.1	-4.30	0.65	0.71	2.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7315	918	4	0	1	1	0	logfile
✔	7SV7	25445	2023-02-19	2021-11-18	3.8	3.26	—	3.9	0.004	1.02	0.0	0.04	12.31	0.00	2.003	1.99	0.69	2.2	97.8	0.0	-0.82	0.60	0.81	2.35	3.9	0.002	0.55	0.0	0.04	15.41	0.00	1.999	5.52	0.30	2.5	97.5	0.0	1.05	0.59	0.61	0.81	1.47	9673	1173	3	0	32	0	0	logfile
✔	7F3E	31432	2023-02-22	2021-06-16	3.62	3.40	3.51	3.7	0.005	0.71	0.0	0.05	15.18	0.00	2.242	12.60	0.00	3.8	96.2	0.0	-0.41	0.63	0.67	2.23	3.6	0.003	0.61	0.0	0.04	17.70	0.00	2.132	11.55	0.50	2.9	97.1	0.0	0.27	1.22	0.65	0.71	2.08	18564	2256	12	0	0	0	0	logfile
✔	7FDH	31543	2023-02-17	2021-07-16	3.72	3.93	—	3.8	0.004	0.72	0.0	0.05	14.51	0.00	2.145	13.12	0.29	3.8	96.2	0.0	-2.91	0.72	0.81	2.27	3.8	0.003	0.71	0.0	0.04	16.14	0.00	2.200	13.04	0.58	2.5	97.5	0.0	1.15	1.23	0.71	0.80	1.97	6488	791	4	0	5	0	0	logfile
✔	7Z4K	14500	2023-02-21	2022-03-04	3.81	4.83	3.89	3.9	0.003	0.44	0.0	0.03	14.82	0.00	2.200	9.44	0.99	2.4	97.6	0.0	1.12	0.85	0.75	0.54	3.9	0.004	0.69	0.0	0.04	16.91	0.00	2.146	21.08	0.25	4.4	95.6	0.0	0.02	1.90	0.88	0.80	0.62	14005	1360	4	138	0	0	0	logfile
✔	7SQ0	25373	2023-02-19	2021-11-04	3.7	3.39	3.64	3.6	0.004	0.68	0.0	0.05	13.62	0.00	2.215	4.77	0.00	2.6	97.4	0.0	-2.91	0.72	0.83	3.99	3.6	0.002	0.57	0.0	0.05	14.27	0.00	2.040	6.57	0.20	2.8	97.2	0.0	1.60	1.91	0.72	0.83	3.50	9160	593	5	0	42	0	4286	logfile

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