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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6iP1 | 9697 | 2022-07-03 | 2018-11-01 | 3.9 | 4.05 | — | 4.0 | 0.006 | 1.03 | 0.0 | 0.05 | 11.71 | 0.00 | 1.321 | 8.09 | 0.34 | 7.5 | 92.5 | 0.0 | -5.85 | 0.59 | 0.72 | 1.01 | 4.0 | 0.004 | 0.95 | 0.0 | 0.04 | 18.38 | 0.00 | 2.200 | 16.40 | 1.02 | 7.3 | 92.7 | 0.0 | -0.36 | 1.25 | 0.60 | 0.75 | -0.05 | 11245 | 1420 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6P4G | 20248 | 2022-07-05 | 2019-05-27 | 3.1 | 3.17 | 3.35 | 3.1 | 0.010 | 1.45 | 4.0 | 0.10 | 17.35 | 0.00 | 2.232 | 2.68 | 3.36 | 8.9 | 90.2 | 0.9 | -4.06 | 0.67 | 0.74 | 2.52 | 3.1 | 0.006 | 0.78 | 2.0 | 0.04 | 17.63 | 0.01 | 2.032 | 13.69 | 0.26 | 5.0 | 94.9 | 0.1 | -1.03 | 1.38 | 0.75 | 0.79 | 1.66 | 79374 | 4862 | 36 | 1900 | 0 | 0 | 0 | logfile |
✔ | 6CU8 | 7619 | 2022-07-02 | 2018-03-23 | 3.6 | 3.65 | — | 4.2 | 0.004 | 0.73 | 0.0 | 0.06 | 7.75 | 0.00 | 2.412 | 6.41 | 0.00 | 5.1 | 94.9 | 0.0 | -2.86 | 0.45 | 0.73 | -0.16 | 4.2 | 0.005 | 0.79 | 0.0 | 0.06 | 12.89 | 0.00 | 2.161 | 16.36 | 0.65 | 15.9 | 84.1 | 0.0 | -3.37 | 1.79 | 0.42 | 0.73 | 2.58 | 2880 | 410 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CU7 | 7618 | 2022-07-03 | 2018-03-23 | 3.5 | 3.63 | — | 4.3 | 0.007 | 0.99 | 0.0 | 0.07 | 9.61 | 0.00 | 2.346 | 4.58 | 2.38 | 15.5 | 84.5 | 0.0 | -4.74 | 0.38 | 0.72 | 2.52 | 4.3 | 0.004 | 0.67 | 0.0 | 0.05 | 14.08 | 0.00 | 2.215 | 17.37 | 0.71 | 13.1 | 86.9 | 0.0 | -4.59 | 1.76 | 0.38 | 0.72 | 1.68 | 4140 | 600 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Y1A | 10669 | 2022-07-02 | 2020-02-11 | 4.2 | 3.60 | 1.84 | 4.3 | 0.005 | 1.09 | 0.0 | 0.07 | 9.42 | 0.00 | 2.509 | 15.01 | 0.00 | 4.3 | 95.7 | 0.0 | -4.99 | 0.53 | 0.63 | — | 4.2 | 0.005 | 0.76 | 0.0 | 0.04 | 11.27 | 0.00 | 2.048 | 15.89 | 0.00 | 9.8 | 90.2 | 0.0 | -4.83 | 1.55 | 0.57 | 0.76 | — | 2960 | 400 | 32 | 0 | 16 | 0 | 0 | logfile |
✔ | 6EoJ | 3908 | 2022-07-04 | 2017-10-09 | 3.55 | 3.58 | 3.51 | 3.6 | 0.007 | 1.33 | 7.0 | 0.09 | 16.65 | 0.00 | 2.526 | 9.99 | 4.80 | 10.1 | 88.2 | 1.7 | -3.75 | 0.59 | 0.78 | 2.60 | 3.6 | 0.005 | 0.84 | 0.0 | 0.05 | 17.60 | 0.01 | 2.089 | 23.05 | 0.52 | 7.3 | 92.6 | 0.1 | -2.45 | 1.58 | 0.65 | 0.78 | 2.27 | 13688 | 1710 | 4 | 0 | 7 | 0 | 0 | logfile |
✔ | 5H1Q | 9570 | 2022-07-05 | 2016-10-11 | 3.3 | 3.90 | — | 4.0 | 0.008 | 1.04 | 0.0 | 0.06 | 11.65 | 0.00 | 1.998 | 16.22 | 0.31 | 12.6 | 86.8 | 0.6 | -5.07 | 0.44 | 0.69 | 3.01 | 3.9 | 0.004 | 0.80 | 0.0 | 0.04 | 16.47 | 0.00 | 2.137 | 9.01 | 0.93 | 9.3 | 90.1 | 0.6 | -0.11 | 0.82 | 0.56 | 0.80 | 1.75 | 23784 | 2888 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 6RKV | 4912 | 2022-07-04 | 2019-04-30 | 4.6 | 4.86 | — | 4.5 | 0.002 | 0.53 | 0.0 | 0.04 | 12.80 | 0.00 | 2.207 | 7.23 | 0.00 | 5.3 | 94.7 | 0.0 | -1.73 | 0.87 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15460 | 1784 | 8 | 64 | 0 | 0 | 0 | logfile |
✔ | 6SEF | 10154 | 2022-07-03 | 2019-07-29 | 3.7 | 4.25 | — | 3.6 | 0.007 | 0.85 | 0.0 | 0.05 | 27.92 | 0.00 | 2.225 | 4.94 | 0.00 | 2.7 | 97.3 | 0.0 | -2.10 | 0.88 | 0.84 | 2.28 | 3.5 | 0.006 | 0.76 | 0.0 | 0.04 | 29.08 | 0.00 | 2.045 | 19.77 | 1.13 | 2.9 | 97.1 | 0.0 | 0.51 | 0.71 | 0.89 | 0.85 | 1.80 | 11919 | 751 | 11 | 290 | 0 | 0 | 0 | logfile |
✘ | 6oSM | 20186 | 2022-07-03 | 2019-05-01 | 3.4 | 3.31 | — | 3.4 | 0.012 | 1.45 | 0.0 | 0.09 | 14.06 | 0.00 | 2.183 | 28.91 | 14.88 | 34.5 | 65.5 | 0.0 | -5.34 | 0.46 | 0.74 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4100 | 600 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SKY | 10231 | 2022-07-05 | 2019-08-16 | 2.8 | 2.95 | — | 3.0 | 0.009 | 0.69 | 0.0 | 0.05 | 13.80 | 0.00 | 2.077 | 5.12 | 3.63 | 4.2 | 95.8 | 0.0 | -2.12 | 0.75 | 0.85 | 2.69 | 3.0 | 0.003 | 0.53 | 0.0 | 0.04 | 16.56 | 0.01 | 2.114 | 5.43 | 2.72 | 2.0 | 98.0 | 0.0 | 1.60 | 2.20 | 0.74 | 0.85 | 2.27 | 22348 | 2824 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6RWK | 10040 | 2022-07-05 | 2019-06-05 | 3.86 | 3.95 | 2.39 | 3.9 | 0.007 | 0.76 | 0.0 | 0.05 | 13.64 | 0.00 | 2.183 | 15.16 | 5.83 | 12.2 | 87.8 | 0.0 | -3.93 | 0.53 | 0.87 | 3.51 | 3.9 | 0.004 | 0.89 | 0.0 | 0.05 | 16.70 | 0.01 | 2.116 | 17.25 | 0.62 | 9.2 | 90.7 | 0.1 | -1.19 | 0.86 | 0.53 | 0.86 | 3.15 | 21760 | 2688 | 32 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SB3 | 10134 | 2022-07-05 | 2019-07-18 | 3.5 | 3.63 | 3.51 | 3.7 | 0.002 | 0.56 | 0.0 | 0.04 | 12.95 | 0.00 | 2.104 | 13.36 | 0.00 | 4.9 | 95.1 | 0.0 | -2.84 | 0.68 | 0.71 | 1.27 | 3.6 | 0.008 | 0.86 | 2.0 | 0.05 | 16.11 | 0.01 | 1.735 | 26.31 | 0.21 | 8.4 | 91.6 | 0.0 | -2.16 | 1.23 | 0.71 | 0.77 | 1.09 | 75712 | 9664 | 32 | 0 | 32 | 0 | 0 | logfile |
✔ | 4UFT | 2867 | 2022-07-04 | 2015-03-19 | 4.3 | 4.24 | — | 4.2 | 0.005 | 0.95 | 0.0 | 0.05 | 11.26 | 0.00 | 1.169 | 8.69 | 0.31 | 13.2 | 83.9 | 3.0 | -4.63 | 0.54 | 0.70 | — | 4.2 | 0.003 | 0.75 | 0.0 | 0.04 | 13.26 | 0.00 | 2.058 | 10.89 | 0.08 | 7.7 | 91.3 | 1.0 | -2.58 | 1.91 | 0.58 | 0.77 | — | 119847 | 14703 | 78 | 234 | 0 | 0 | 0 | logfile |
✔ | 6RVR | 10010 | 2022-07-07 | 2019-05-31 | 3.46 | 3.63 | — | 3.5 | 0.008 | 0.75 | 0.0 | 0.05 | 14.89 | 0.00 | 2.082 | 8.59 | 0.57 | 10.3 | 89.7 | 0.0 | -4.34 | 0.81 | 0.85 | 2.30 | 3.5 | 0.002 | 0.58 | 0.0 | 0.04 | 15.89 | 0.00 | 2.183 | 6.70 | 0.19 | 6.3 | 93.7 | 0.0 | -0.67 | 0.46 | 0.79 | 0.84 | 1.75 | 37716 | 4680 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GH6 | 0002 | 2022-07-05 | 2018-05-04 | 4.1 | 4.20 | — | 3.9 | 0.004 | 0.91 | 0.0 | 0.05 | 14.40 | 0.00 | 1.934 | 16.38 | 0.38 | 9.7 | 89.3 | 0.9 | -3.61 | 0.85 | 0.74 | — | 3.9 | 0.004 | 0.77 | 0.0 | 0.04 | 16.02 | 0.00 | 1.988 | 11.94 | 0.08 | 9.3 | 90.0 | 0.6 | -0.97 | 1.78 | 0.87 | 0.81 | — | 28051 | 3482 | 8 | 96 | 51 | 0 | 0 | logfile |
✔ | 5U76 | 8517 | 2022-07-06 | 2016-12-11 | 3.76 | 4.46 | — | 4.4 | 0.007 | 1.04 | 0.0 | 0.06 | 13.03 | 0.00 | 1.410 | 5.10 | 0.51 | 8.4 | 91.3 | 0.2 | -3.69 | 0.56 | 0.58 | 0.90 | 4.3 | 0.005 | 0.89 | 0.0 | 0.05 | 16.04 | 0.01 | 2.126 | 22.87 | 0.61 | 5.7 | 94.3 | 0.0 | -0.48 | 2.52 | 0.64 | 0.77 | 0.97 | 28364 | 3512 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5X6o | 6708 | 2022-07-04 | 2017-02-22 | 3.9 | 4.03 | — | 3.9 | 0.007 | 1.01 | 4.0 | 0.06 | 11.26 | 0.00 | 1.863 | 21.14 | 1.64 | 15.8 | 82.1 | 2.2 | -5.44 | 0.60 | 0.72 | 1.68 | 3.9 | 0.009 | 1.01 | 1.0 | 0.04 | 14.78 | 0.00 | 2.185 | 10.83 | 0.29 | 8.2 | 90.4 | 1.3 | -0.84 | 0.80 | 0.61 | 0.76 | 0.82 | 19309 | 2701 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VAL | 21142 | 2022-07-05 | 2019-12-17 | 3.87 | 4.25 | — | 4.2 | 0.005 | 0.74 | 0.0 | 0.04 | 14.40 | 0.00 | 2.052 | 9.96 | 1.02 | 6.0 | 94.0 | 0.0 | -3.34 | 0.66 | 0.73 | 2.18 | 4.2 | 0.003 | 0.70 | 0.0 | 0.04 | 16.74 | 0.00 | 2.129 | 7.64 | 0.97 | 2.8 | 97.2 | 0.0 | 1.31 | 2.44 | 0.68 | 0.79 | 1.61 | 21615 | 2827 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JD4 | 6633 | 2022-07-05 | 2016-03-28 | 3.4 | 3.40 | — | 3.4 | 0.009 | 0.96 | 0.0 | 0.05 | 10.21 | 0.00 | 2.157 | 15.85 | 0.00 | 6.8 | 93.0 | 0.2 | -4.82 | 0.80 | 0.86 | 3.90 | 3.4 | 0.004 | 0.64 | 0.0 | 0.04 | 15.78 | 0.00 | 2.019 | 12.19 | 0.28 | 4.1 | 95.9 | 0.0 | 0.42 | 0.96 | 0.81 | 0.88 | 2.67 | 24054 | 2982 | 12 | 0 | 18 | 0 | 0 | logfile |