Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6iP1	9697	2022-07-03	2018-11-01	3.9	4.05	—	4.0	0.006	1.03	0.0	0.05	11.71	0.00	1.321	8.09	0.34	7.5	92.5	0.0	-5.85	0.59	0.72	1.01	4.0	0.004	0.95	0.0	0.04	18.38	0.00	2.200	16.40	1.02	7.3	92.7	0.0	-0.36	1.25	0.60	0.75	-0.05	11245	1420	8	0	0	0	0	logfile
✔	6P4G	20248	2022-07-05	2019-05-27	3.1	3.17	3.35	3.1	0.010	1.45	4.0	0.10	17.35	0.00	2.232	2.68	3.36	8.9	90.2	0.9	-4.06	0.67	0.74	2.52	3.1	0.006	0.78	2.0	0.04	17.63	0.01	2.032	13.69	0.26	5.0	94.9	0.1	-1.03	1.38	0.75	0.79	1.66	79374	4862	36	1900	0	0	0	logfile
✔	6CU8	7619	2022-07-02	2018-03-23	3.6	3.65	—	4.2	0.004	0.73	0.0	0.06	7.75	0.00	2.412	6.41	0.00	5.1	94.9	0.0	-2.86	0.45	0.73	-0.16	4.2	0.005	0.79	0.0	0.06	12.89	0.00	2.161	16.36	0.65	15.9	84.1	0.0	-3.37	1.79	0.42	0.73	2.58	2880	410	10	0	0	0	0	logfile
✔	6CU7	7618	2022-07-03	2018-03-23	3.5	3.63	—	4.3	0.007	0.99	0.0	0.07	9.61	0.00	2.346	4.58	2.38	15.5	84.5	0.0	-4.74	0.38	0.72	2.52	4.3	0.004	0.67	0.0	0.05	14.08	0.00	2.215	17.37	0.71	13.1	86.9	0.0	-4.59	1.76	0.38	0.72	1.68	4140	600	10	0	0	0	0	logfile
✔	6Y1A	10669	2022-07-02	2020-02-11	4.2	3.60	1.84	4.3	0.005	1.09	0.0	0.07	9.42	0.00	2.509	15.01	0.00	4.3	95.7	0.0	-4.99	0.53	0.63	—	4.2	0.005	0.76	0.0	0.04	11.27	0.00	2.048	15.89	0.00	9.8	90.2	0.0	-4.83	1.55	0.57	0.76	—	2960	400	32	0	16	0	0	logfile
✔	6EoJ	3908	2022-07-04	2017-10-09	3.55	3.58	3.51	3.6	0.007	1.33	7.0	0.09	16.65	0.00	2.526	9.99	4.80	10.1	88.2	1.7	-3.75	0.59	0.78	2.60	3.6	0.005	0.84	0.0	0.05	17.60	0.01	2.089	23.05	0.52	7.3	92.6	0.1	-2.45	1.58	0.65	0.78	2.27	13688	1710	4	0	7	0	0	logfile
✔	5H1Q	9570	2022-07-05	2016-10-11	3.3	3.90	—	4.0	0.008	1.04	0.0	0.06	11.65	0.00	1.998	16.22	0.31	12.6	86.8	0.6	-5.07	0.44	0.69	3.01	3.9	0.004	0.80	0.0	0.04	16.47	0.00	2.137	9.01	0.93	9.3	90.1	0.6	-0.11	0.82	0.56	0.80	1.75	23784	2888	8	0	0	0	0	logfile
✘	6RKV	4912	2022-07-04	2019-04-30	4.6	4.86	—	4.5	0.002	0.53	0.0	0.04	12.80	0.00	2.207	7.23	0.00	5.3	94.7	0.0	-1.73	0.87	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15460	1784	8	64	0	0	0	logfile
✔	6SEF	10154	2022-07-03	2019-07-29	3.7	4.25	—	3.6	0.007	0.85	0.0	0.05	27.92	0.00	2.225	4.94	0.00	2.7	97.3	0.0	-2.10	0.88	0.84	2.28	3.5	0.006	0.76	0.0	0.04	29.08	0.00	2.045	19.77	1.13	2.9	97.1	0.0	0.51	0.71	0.89	0.85	1.80	11919	751	11	290	0	0	0	logfile
✘	6oSM	20186	2022-07-03	2019-05-01	3.4	3.31	—	3.4	0.012	1.45	0.0	0.09	14.06	0.00	2.183	28.91	14.88	34.5	65.5	0.0	-5.34	0.46	0.74	2.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4100	600	10	0	0	0	0	logfile
✔	6SKY	10231	2022-07-05	2019-08-16	2.8	2.95	—	3.0	0.009	0.69	0.0	0.05	13.80	0.00	2.077	5.12	3.63	4.2	95.8	0.0	-2.12	0.75	0.85	2.69	3.0	0.003	0.53	0.0	0.04	16.56	0.01	2.114	5.43	2.72	2.0	98.0	0.0	1.60	2.20	0.74	0.85	2.27	22348	2824	4	0	4	0	0	logfile
✔	6RWK	10040	2022-07-05	2019-06-05	3.86	3.95	2.39	3.9	0.007	0.76	0.0	0.05	13.64	0.00	2.183	15.16	5.83	12.2	87.8	0.0	-3.93	0.53	0.87	3.51	3.9	0.004	0.89	0.0	0.05	16.70	0.01	2.116	17.25	0.62	9.2	90.7	0.1	-1.19	0.86	0.53	0.86	3.15	21760	2688	32	0	0	0	0	logfile
✔	6SB3	10134	2022-07-05	2019-07-18	3.5	3.63	3.51	3.7	0.002	0.56	0.0	0.04	12.95	0.00	2.104	13.36	0.00	4.9	95.1	0.0	-2.84	0.68	0.71	1.27	3.6	0.008	0.86	2.0	0.05	16.11	0.01	1.735	26.31	0.21	8.4	91.6	0.0	-2.16	1.23	0.71	0.77	1.09	75712	9664	32	0	32	0	0	logfile
✔	4UFT	2867	2022-07-04	2015-03-19	4.3	4.24	—	4.2	0.005	0.95	0.0	0.05	11.26	0.00	1.169	8.69	0.31	13.2	83.9	3.0	-4.63	0.54	0.70	—	4.2	0.003	0.75	0.0	0.04	13.26	0.00	2.058	10.89	0.08	7.7	91.3	1.0	-2.58	1.91	0.58	0.77	—	119847	14703	78	234	0	0	0	logfile
✔	6RVR	10010	2022-07-07	2019-05-31	3.46	3.63	—	3.5	0.008	0.75	0.0	0.05	14.89	0.00	2.082	8.59	0.57	10.3	89.7	0.0	-4.34	0.81	0.85	2.30	3.5	0.002	0.58	0.0	0.04	15.89	0.00	2.183	6.70	0.19	6.3	93.7	0.0	-0.67	0.46	0.79	0.84	1.75	37716	4680	12	0	0	0	0	logfile
✔	6GH6	0002	2022-07-05	2018-05-04	4.1	4.20	—	3.9	0.004	0.91	0.0	0.05	14.40	0.00	1.934	16.38	0.38	9.7	89.3	0.9	-3.61	0.85	0.74	—	3.9	0.004	0.77	0.0	0.04	16.02	0.00	1.988	11.94	0.08	9.3	90.0	0.6	-0.97	1.78	0.87	0.81	—	28051	3482	8	96	51	0	0	logfile
✔	5U76	8517	2022-07-06	2016-12-11	3.76	4.46	—	4.4	0.007	1.04	0.0	0.06	13.03	0.00	1.410	5.10	0.51	8.4	91.3	0.2	-3.69	0.56	0.58	0.90	4.3	0.005	0.89	0.0	0.05	16.04	0.01	2.126	22.87	0.61	5.7	94.3	0.0	-0.48	2.52	0.64	0.77	0.97	28364	3512	4	0	0	0	0	logfile
✔	5X6o	6708	2022-07-04	2017-02-22	3.9	4.03	—	3.9	0.007	1.01	4.0	0.06	11.26	0.00	1.863	21.14	1.64	15.8	82.1	2.2	-5.44	0.60	0.72	1.68	3.9	0.009	1.01	1.0	0.04	14.78	0.00	2.185	10.83	0.29	8.2	90.4	1.3	-0.84	0.80	0.61	0.76	0.82	19309	2701	2	0	0	0	0	logfile
✔	6VAL	21142	2022-07-05	2019-12-17	3.87	4.25	—	4.2	0.005	0.74	0.0	0.04	14.40	0.00	2.052	9.96	1.02	6.0	94.0	0.0	-3.34	0.66	0.73	2.18	4.2	0.003	0.70	0.0	0.04	16.74	0.00	2.129	7.64	0.97	2.8	97.2	0.0	1.31	2.44	0.68	0.79	1.61	21615	2827	11	0	0	0	0	logfile
✔	3JD4	6633	2022-07-05	2016-03-28	3.4	3.40	—	3.4	0.009	0.96	0.0	0.05	10.21	0.00	2.157	15.85	0.00	6.8	93.0	0.2	-4.82	0.80	0.86	3.90	3.4	0.004	0.64	0.0	0.04	15.78	0.00	2.019	12.19	0.28	4.1	95.9	0.0	0.42	0.96	0.81	0.88	2.67	24054	2982	12	0	18	0	0	logfile

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