Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6SGR	10182	2023-11-13	2019-08-05	3.17	3.28	3.08	3.2	0.004	0.54	0.0	0.04	13.56	0.00	2.201	5.15	0.00	3.2	96.8	0.0	-3.06	0.69	0.83	3.52	3.2	0.004	0.57	0.0	0.04	15.44	0.00	2.003	5.76	0.10	3.2	96.8	0.0	1.08	0.77	0.66	0.84	2.89	54142	3528	8	0	0	0	27330	logfile
✔	7VAo	31854	2023-11-20	2021-08-30	3.4	3.03	3.34	3.2	0.004	0.56	0.0	0.04	13.49	0.00	2.144	4.61	0.00	2.3	97.7	0.0	1.13	0.58	0.80	2.81	3.1	0.004	0.59	0.0	0.04	16.37	0.00	1.898	6.43	0.19	2.8	97.2	0.0	0.10	0.67	0.63	0.84	2.50	29558	3788	15	0	6	0	0	logfile
✔	7FDH	31543	2023-11-14	2021-07-16	3.72	3.93	—	3.8	0.004	0.73	0.0	0.05	14.58	0.00	2.145	13.20	0.29	3.8	96.2	0.0	-2.91	0.72	0.81	2.27	3.8	0.003	0.72	0.0	0.04	16.26	0.00	2.200	12.65	0.58	2.2	97.8	0.0	1.14	0.61	0.71	0.80	2.01	6488	791	4	0	5	0	0	logfile
✔	7SVR	25452	2023-11-14	2021-11-19	3.9	4.11	—	4.1	0.004	0.80	0.0	0.05	14.31	0.00	2.213	6.79	0.00	4.3	95.7	0.0	-2.10	0.63	0.74	1.24	4.0	0.004	0.68	0.0	0.04	16.79	0.00	2.243	8.51	0.68	7.1	92.9	0.0	0.26	0.49	0.65	0.76	0.97	7841	1134	3	0	20	0	0	logfile
✔	6SNi	10258	2023-11-14	2019-08-24	3.0	3.18	—	3.2	0.020	1.04	0.0	0.11	14.15	0.00	2.044	24.53	8.07	9.2	90.5	0.2	-4.21	0.64	0.73	2.67	3.3	0.003	0.63	0.0	0.04	14.90	0.01	2.154	6.40	3.60	4.6	95.4	0.0	0.04	1.26	0.66	0.85	2.21	7510	918	7	0	8	7	0	logfile
✔	7XU2	33456	2023-11-13	2022-05-18	3.2	3.33	3.13	3.2	0.012	0.95	2.0	0.08	13.93	0.00	2.096	2.07	0.86	5.5	94.5	0.0	-1.37	0.84	0.82	3.25	3.2	0.003	0.54	2.0	0.06	14.43	0.00	2.020	4.95	0.10	4.5	95.5	0.0	-0.53	0.34	0.85	0.85	3.37	52218	3321	18	0	66	0	25248	logfile
✔	7P37	13178	2023-11-16	2021-07-07	2.96	3.18	3.03	3.2	0.005	0.85	0.0	0.05	11.41	0.00	2.280	7.21	0.00	2.4	97.6	0.0	1.79	0.68	0.76	2.89	3.1	0.002	0.50	0.0	0.04	15.53	0.00	2.170	9.70	2.18	2.5	97.5	0.0	1.44	0.92	0.70	0.81	3.10	14496	1764	24	0	36	0	0	logfile
✔	7TCG	25811	2023-11-14	2021-12-23	3.8	3.89	3.84	3.9	0.004	1.15	0.0	0.04	15.91	0.00	2.138	5.54	0.00	7.9	92.1	0.0	-0.53	0.67	0.81	1.03	3.9	0.002	0.65	0.0	0.04	16.69	0.00	2.142	5.76	0.21	7.0	93.0	0.0	-0.10	0.94	0.68	0.80	1.06	8891	1123	4	0	1	0	0	logfile
✔	7NH9	12321	2023-11-15	2021-02-10	3.03	3.58	—	3.4	0.007	0.80	0.0	0.04	14.80	0.00	2.236	12.71	3.31	11.7	88.3	0.0	-2.35	0.75	0.84	2.46	3.4	0.003	0.66	0.0	0.04	16.04	0.00	2.252	11.90	0.07	9.2	90.8	0.0	0.93	0.52	0.76	0.86	2.43	13120	1635	5	0	0	0	0	logfile
✔	7LD5	23282	2023-11-15	2021-01-12	3.07	3.46	—	3.4	0.006	0.67	0.0	0.05	16.01	0.00	2.102	8.95	6.51	4.3	95.7	0.0	-2.06	0.77	0.82	2.94	3.4	0.003	0.54	0.0	0.04	15.93	0.00	2.172	7.35	0.14	2.2	97.8	0.0	1.11	0.35	0.71	0.81	2.98	13542	1761	9	15	6	0	0	logfile
✔	8DKX	27493	2023-11-13	2022-07-06	3.0	3.53	3.00	3.4	0.005	0.75	1.0	0.05	13.28	0.00	2.099	8.39	0.62	5.5	94.5	0.0	-3.42	0.62	0.84	4.43	3.4	0.003	0.60	0.0	0.04	15.64	0.00	2.169	7.12	2.28	5.1	94.9	0.0	-0.23	0.91	0.56	0.84	3.75	4370	553	3	0	0	0	0	logfile
✔	7VAP	31857	2023-11-20	2021-08-30	3.0	2.45	2.98	2.9	0.004	0.54	0.0	0.04	13.36	0.00	1.645	3.89	0.00	2.0	98.0	0.0	1.43	0.54	0.79	3.19	2.9	0.003	0.58	0.0	0.04	17.12	0.00	1.931	5.93	2.50	2.3	97.7	0.0	0.60	0.62	0.63	0.85	2.90	29558	3788	15	0	6	0	0	logfile
✔	7BZF	30252	2023-11-14	2020-04-27	3.26	3.61	3.32	3.6	0.003	0.61	0.0	0.04	13.94	0.00	2.199	11.67	0.00	8.5	91.5	0.0	-4.42	0.73	0.77	2.58	3.6	0.003	0.60	0.0	0.04	15.96	0.00	2.163	12.08	0.57	6.8	93.2	0.0	-1.44	0.47	0.69	0.77	1.88	9932	1200	7	19	2	0	0	logfile
✔	8E74	27935	2023-11-19	2022-08-23	2.94	3.15	2.99	3.2	0.004	0.64	0.0	0.04	16.42	0.00	1.665	4.71	2.63	4.8	94.9	0.3	-1.14	0.69	0.83	3.10	3.2	0.003	0.59	0.0	0.04	17.88	0.00	2.029	5.78	2.67	4.5	95.4	0.1	0.20	1.15	0.72	0.86	2.41	25815	3048	10	106	3	0	0	logfile
✔	6BZo	7319	2023-11-19	2017-12-25	3.38	3.79	—	3.7	0.003	0.55	1.0	0.04	14.43	0.00	1.869	39.37	7.27	10.1	89.5	0.4	-4.07	0.82	0.86	2.16	3.7	0.005	0.69	0.0	0.04	16.08	0.00	2.007	9.16	0.47	7.4	92.5	0.1	-0.89	1.67	0.82	0.88	1.81	27262	3353	13	57	4	6	0	logfile
✔	7JYi	22526	2023-11-14	2020-08-30	3.4	3.52	—	3.5	0.008	0.75	0.0	0.05	16.05	0.00	2.104	14.16	5.45	10.3	89.2	0.5	-4.54	0.43	0.84	2.04	3.5	0.004	0.69	0.0	0.04	16.64	0.00	2.112	8.81	0.42	8.4	91.4	0.2	-1.77	0.66	0.40	0.85	2.23	8807	1152	4	0	0	0	0	logfile
✔	8D5C	27208	2023-11-19	2022-06-04	3.9	4.25	3.98	4.2	0.002	0.48	0.0	0.04	13.15	0.00	1.991	32.36	0.00	7.0	93.0	0.0	-1.61	0.65	0.64	1.09	4.2	0.003	0.55	0.0	0.04	14.87	0.00	1.991	38.84	0.04	10.7	89.3	0.0	-1.68	1.24	0.67	0.67	1.04	26109	2730	15	0	0	0	4739	logfile
✔	7TR9	26083	2023-11-21	2022-01-28	3.9	4.30	—	4.1	0.003	0.68	2.0	0.05	13.00	0.00	1.387	16.20	0.17	8.7	90.9	0.4	-2.44	0.80	0.72	0.00	4.1	0.003	0.78	0.0	0.05	15.80	0.00	1.154	24.90	0.64	8.9	90.8	0.3	-2.20	1.96	0.82	0.77	0.53	34208	4192	20	75	2	0	0	logfile
✔	6S6X	10108	2023-11-20	2019-07-03	3.5	3.64	3.54	3.6	0.023	0.99	0.0	0.13	14.05	0.00	2.111	6.82	0.04	4.2	95.8	0.0	-2.91	0.76	0.85	1.81	3.6	0.004	0.86	0.0	0.05	15.70	0.00	1.783	6.26	0.21	3.6	96.4	0.0	-0.36	1.55	0.77	0.87	1.88	90342	11664	24	0	30	0	0	logfile
✔	6S6U	10106	2023-11-20	2019-07-03	3.5	3.61	3.48	3.6	0.024	0.99	0.0	0.11	13.17	0.00	2.058	6.00	0.44	3.4	96.6	0.0	-2.83	0.80	0.86	2.14	3.6	0.002	0.86	0.0	0.05	15.04	0.00	1.785	5.90	0.13	2.7	97.3	0.0	-0.23	0.51	0.80	0.86	2.00	82978	10720	20	0	24	0	0	logfile

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