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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8B64 | 15862 | 2023-02-23 | 2022-09-26 | 2.589 | 2.35 | 2.34 | 2.5 | 0.020 | 4.46 | 0.0 | 0.04 | 20.81 | 0.00 | 1.980 | 8.44 | 1.19 | 0.8 | 99.2 | 0.0 | 3.50 | 0.67 | 0.88 | 4.98 | 2.5 | 0.004 | 1.15 | 0.0 | 0.04 | 19.92 | 0.00 | 1.956 | 7.44 | 1.57 | 1.1 | 98.9 | 0.0 | 2.97 | 0.89 | 0.67 | 0.90 | 4.87 | 21678 | 2249 | 66 | 0 | 75 | 0 | 0 | logfile |
✔ | 8DKX | 27493 | 2023-02-17 | 2022-07-06 | 3.0 | 3.53 | 3.00 | 3.4 | 0.005 | 0.75 | 1.0 | 0.05 | 13.28 | 0.00 | 2.099 | 8.39 | 0.62 | 5.5 | 94.5 | 0.0 | -3.42 | 0.62 | 0.84 | 4.43 | 3.4 | 0.003 | 0.60 | 0.0 | 0.04 | 15.64 | 0.00 | 2.169 | 7.12 | 2.28 | 5.1 | 94.9 | 0.0 | -0.23 | 0.91 | 0.56 | 0.84 | 3.75 | 4370 | 553 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7M68 | 23690 | 2023-02-24 | 2021-03-25 | 4.04 | 4.54 | 4.34 | 4.5 | 0.005 | 0.75 | 0.0 | 0.04 | 13.49 | 0.00 | 2.358 | 1.05 | 0.60 | 5.8 | 94.2 | 0.0 | -0.08 | 0.51 | 0.70 | — | 4.5 | 0.003 | 0.57 | 0.0 | 0.04 | 13.42 | 0.00 | 2.019 | 10.49 | 0.00 | 7.4 | 92.6 | 0.0 | -0.76 | 1.42 | 0.52 | 0.73 | — | 21806 | 1390 | 1 | 0 | 0 | 0 | 10919 | logfile |
✔ | 7SL3 | 25190 | 2023-02-22 | 2021-10-22 | 3.4 | 3.65 | — | 3.5 | 0.002 | 0.54 | 0.0 | 0.04 | 13.25 | 0.00 | 2.238 | 8.44 | 0.32 | 6.4 | 93.4 | 0.2 | -0.71 | 0.80 | 0.81 | 2.46 | 3.5 | 0.004 | 0.57 | 0.0 | 0.04 | 14.42 | 0.00 | 2.193 | 9.89 | 0.13 | 6.4 | 93.6 | 0.0 | -0.80 | 1.14 | 0.81 | 0.84 | 2.59 | 14016 | 1736 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VAQ | 31858 | 2023-02-27 | 2021-08-30 | 3.6 | 3.18 | 3.57 | 3.3 | 0.003 | 0.53 | 0.0 | 0.04 | 13.52 | 0.00 | 1.066 | 5.47 | 0.00 | 1.8 | 98.2 | 0.0 | 1.14 | 0.57 | 0.77 | 2.21 | 3.2 | 0.004 | 0.61 | 0.0 | 0.04 | 16.58 | 0.00 | 1.859 | 8.32 | 0.29 | 3.2 | 96.8 | 0.0 | 0.04 | 0.74 | 0.60 | 0.79 | 2.18 | 29558 | 3788 | 15 | 0 | 6 | 0 | 0 | logfile |
✔ | 6PiG | 20350 | 2023-02-26 | 2019-06-26 | 3.5 | 3.54 | 3.59 | 3.5 | 0.014 | 1.75 | 1.0 | 0.09 | 16.07 | 0.00 | 2.173 | 1.98 | 1.58 | 15.2 | 81.4 | 3.5 | -4.85 | 0.60 | 0.76 | 2.54 | 3.5 | 0.005 | 0.87 | 0.0 | 0.05 | 17.22 | 0.01 | 2.097 | 12.08 | 0.49 | 17.1 | 82.3 | 0.6 | -3.03 | 0.58 | 0.66 | 0.80 | 2.35 | 28867 | 3439 | 11 | 60 | 0 | 0 | 0 | logfile |
✔ | 7Y6S | 33646 | 2023-02-25 | 2022-06-21 | 3.1 | 4.17 | 3.22 | 3.3 | 0.003 | 0.60 | 0.0 | 0.05 | 14.29 | 0.00 | 2.147 | 9.28 | 0.31 | 4.3 | 95.5 | 0.1 | -0.64 | 0.86 | 0.85 | 2.88 | 3.3 | 0.005 | 0.60 | 0.0 | 0.05 | 15.26 | 0.00 | 2.177 | 9.12 | 0.19 | 4.7 | 95.3 | 0.0 | 0.17 | 0.32 | 0.86 | 0.85 | 2.81 | 24852 | 3012 | 42 | 0 | 120 | 0 | 0 | logfile |
✔ | 7PTU | 13638 | 2023-02-22 | 2021-09-27 | 3.87 | 4.78 | 3.79 | 3.9 | 0.003 | 0.79 | 0.0 | 0.05 | 13.65 | 0.00 | 2.173 | 9.09 | 0.26 | 4.7 | 95.3 | 0.0 | -1.48 | 0.81 | 0.83 | 1.51 | 3.9 | 0.008 | 0.79 | 0.0 | 0.05 | 14.74 | 0.00 | 2.152 | 17.93 | 0.31 | 7.6 | 92.4 | 0.0 | -1.64 | 1.29 | 0.82 | 0.86 | 1.33 | 17035 | 2370 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 8DKi | 27489 | 2023-02-17 | 2022-07-05 | 3.32 | 3.57 | 3.29 | 3.6 | 0.003 | 0.64 | 0.0 | 0.05 | 13.79 | 0.00 | 2.204 | 9.78 | 0.21 | 4.6 | 95.4 | 0.0 | -0.62 | 0.62 | 0.84 | 2.61 | 3.6 | 0.003 | 0.62 | 0.0 | 0.04 | 15.85 | 0.00 | 2.212 | 10.59 | 0.21 | 6.6 | 93.4 | 0.0 | -0.10 | 0.92 | 0.61 | 0.86 | 2.61 | 4365 | 552 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QTK | 14143 | 2023-02-17 | 2022-01-14 | 3.84 | 4.13 | — | 4.0 | 0.004 | 0.73 | 1.0 | 0.05 | 12.92 | 0.00 | 2.182 | 9.34 | 0.54 | 4.9 | 95.0 | 0.2 | -0.03 | 0.61 | 0.79 | 1.74 | 4.0 | 0.003 | 0.68 | 0.0 | 0.05 | 14.41 | 0.00 | 2.205 | 9.24 | 0.54 | 4.7 | 95.1 | 0.2 | -0.31 | 0.56 | 0.61 | 0.79 | 1.96 | 5009 | 643 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7RSQ | 24677 | 2023-02-17 | 2021-08-11 | 3.8 | 4.03 | 3.73 | 4.1 | 0.008 | 0.80 | 0.0 | 0.05 | 12.74 | 0.00 | 2.360 | 4.01 | 2.88 | 3.0 | 97.0 | 0.0 | -0.64 | 0.63 | 0.68 | 1.39 | 4.1 | 0.003 | 0.53 | 0.0 | 0.03 | 15.41 | 0.00 | 2.381 | 3.76 | 0.48 | 3.0 | 97.0 | 0.0 | 2.46 | 1.83 | 0.64 | 0.71 | 1.77 | 3970 | 246 | 1 | 0 | 0 | 0 | 1958 | logfile |
✔ | 7P37 | 13178 | 2023-02-21 | 2021-07-07 | 2.96 | 3.18 | 3.03 | 3.2 | 0.005 | 0.85 | 0.0 | 0.05 | 11.41 | 0.00 | 2.280 | 7.21 | 0.00 | 2.4 | 97.6 | 0.0 | 1.79 | 0.68 | 0.76 | 2.89 | 3.1 | 0.002 | 0.50 | 0.0 | 0.04 | 15.53 | 0.00 | 2.170 | 9.70 | 2.18 | 2.5 | 97.5 | 0.0 | 1.44 | 0.92 | 0.70 | 0.81 | 3.10 | 14496 | 1764 | 24 | 0 | 36 | 0 | 0 | logfile |
✔ | 8D1M | 27135 | 2023-02-21 | 2022-05-27 | 3.11 | 3.41 | 3.10 | 3.4 | 0.006 | 0.87 | 0.0 | 0.06 | 15.34 | 0.00 | 2.396 | 12.79 | 1.18 | 2.7 | 97.1 | 0.3 | 1.27 | 0.63 | 0.86 | 3.50 | 3.4 | 0.002 | 0.49 | 0.0 | 0.04 | 16.53 | 0.00 | 2.258 | 7.99 | 0.00 | 1.8 | 98.2 | 0.0 | 1.40 | 0.92 | 0.61 | 0.87 | 2.41 | 15590 | 1880 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VAL | 31849 | 2023-02-27 | 2021-08-30 | 3.1 | 2.59 | 2.99 | 2.9 | 0.003 | 0.55 | 0.0 | 0.04 | 12.97 | 0.00 | 1.776 | 3.43 | 0.00 | 1.5 | 98.5 | 0.0 | 1.44 | 0.56 | 0.80 | 3.46 | 2.9 | 0.003 | 0.59 | 0.0 | 0.04 | 16.08 | 0.00 | 1.896 | 5.72 | 0.13 | 2.2 | 97.8 | 0.0 | 0.55 | 0.57 | 0.66 | 0.87 | 3.41 | 29558 | 3788 | 15 | 0 | 6 | 0 | 0 | logfile |
✘ | 6SNH | 10257 | 2023-02-19 | 2019-08-24 | 3.9 | 4.16 | — | 3.9 | 0.008 | 1.24 | 1.0 | 0.06 | 14.34 | 0.00 | 2.181 | 19.63 | 1.49 | 11.0 | 88.9 | 0.1 | -4.30 | 0.65 | 0.71 | 2.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7315 | 918 | 4 | 0 | 1 | 1 | 0 | logfile |
✔ | 7SV7 | 25445 | 2023-02-19 | 2021-11-18 | 3.8 | 3.26 | — | 3.9 | 0.004 | 1.02 | 0.0 | 0.04 | 12.31 | 0.00 | 2.003 | 1.99 | 0.69 | 2.2 | 97.8 | 0.0 | -0.82 | 0.60 | 0.81 | 2.35 | 3.9 | 0.002 | 0.55 | 0.0 | 0.04 | 15.41 | 0.00 | 1.999 | 5.52 | 0.30 | 2.5 | 97.5 | 0.0 | 1.05 | 0.59 | 0.61 | 0.81 | 1.47 | 9673 | 1173 | 3 | 0 | 32 | 0 | 0 | logfile |
✔ | 7F3E | 31432 | 2023-02-22 | 2021-06-16 | 3.62 | 3.40 | 3.51 | 3.7 | 0.005 | 0.71 | 0.0 | 0.05 | 15.18 | 0.00 | 2.242 | 12.60 | 0.00 | 3.8 | 96.2 | 0.0 | -0.41 | 0.63 | 0.67 | 2.23 | 3.6 | 0.003 | 0.61 | 0.0 | 0.04 | 17.70 | 0.00 | 2.132 | 11.55 | 0.50 | 2.9 | 97.1 | 0.0 | 0.27 | 1.22 | 0.65 | 0.71 | 2.08 | 18564 | 2256 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FDH | 31543 | 2023-02-17 | 2021-07-16 | 3.72 | 3.93 | — | 3.8 | 0.004 | 0.72 | 0.0 | 0.05 | 14.51 | 0.00 | 2.145 | 13.12 | 0.29 | 3.8 | 96.2 | 0.0 | -2.91 | 0.72 | 0.81 | 2.27 | 3.8 | 0.003 | 0.71 | 0.0 | 0.04 | 16.14 | 0.00 | 2.200 | 13.04 | 0.58 | 2.5 | 97.5 | 0.0 | 1.15 | 1.23 | 0.71 | 0.80 | 1.97 | 6488 | 791 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 7Z4K | 14500 | 2023-02-21 | 2022-03-04 | 3.81 | 4.83 | 3.89 | 3.9 | 0.003 | 0.44 | 0.0 | 0.03 | 14.82 | 0.00 | 2.200 | 9.44 | 0.99 | 2.4 | 97.6 | 0.0 | 1.12 | 0.85 | 0.75 | 0.54 | 3.9 | 0.004 | 0.69 | 0.0 | 0.04 | 16.91 | 0.00 | 2.146 | 21.08 | 0.25 | 4.4 | 95.6 | 0.0 | 0.02 | 1.90 | 0.88 | 0.80 | 0.62 | 14005 | 1360 | 4 | 138 | 0 | 0 | 0 | logfile |
✔ | 7SQ0 | 25373 | 2023-02-19 | 2021-11-04 | 3.7 | 3.39 | 3.64 | 3.6 | 0.004 | 0.68 | 0.0 | 0.05 | 13.62 | 0.00 | 2.215 | 4.77 | 0.00 | 2.6 | 97.4 | 0.0 | -2.91 | 0.72 | 0.83 | 3.99 | 3.6 | 0.002 | 0.57 | 0.0 | 0.05 | 14.27 | 0.00 | 2.040 | 6.57 | 0.20 | 2.8 | 97.2 | 0.0 | 1.60 | 1.91 | 0.72 | 0.83 | 3.50 | 9160 | 593 | 5 | 0 | 42 | 0 | 4286 | logfile |