Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WPF	32685	2023-08-23	2022-01-23	2.92	2.31	—	2.1	0.003	0.68	10.0	0.09	11.82	0.00	2.025	5.35	0.03	4.1	95.9	0.0	-0.16	0.65	0.65	2.36	2.0	0.003	0.67	0.0	0.05	14.80	0.00	2.066	9.35	2.34	5.0	95.0	0.0	-0.41	0.52	0.67	0.71	2.21	36202	4743	17	0	39	0	0	logfile
✔	7YKD	33891	2023-08-11	2022-07-22	2.81	3.29	2.94	3.2	0.009	0.86	0.0	0.06	13.08	0.00	2.118	15.46	0.10	5.0	95.0	0.0	-0.18	0.70	0.83	4.27	3.2	0.003	0.63	0.0	0.04	15.78	0.00	2.186	9.27	1.25	3.3	96.7	0.0	0.57	0.93	0.63	0.81	3.01	8965	1133	7	0	5	0	0	logfile
✔	7XDE	33145	2023-08-15	2022-03-26	2.72	3.00	2.86	3.1	0.011	0.82	0.0	0.05	13.03	0.00	2.110	8.62	0.63	1.2	98.8	0.0	0.38	0.68	0.81	3.27	3.1	0.003	0.48	0.0	0.04	15.72	0.00	2.132	8.20	1.42	1.6	98.4	0.0	0.92	1.11	0.64	0.80	2.93	17896	2248	8	0	4	0	0	logfile
✔	7PE7	13347	2023-08-11	2021-08-09	3.41	3.76	—	3.7	0.002	0.46	0.0	0.04	9.05	0.00	2.205	4.36	0.98	3.3	96.6	0.1	-0.02	0.78	0.80	1.71	3.6	0.003	0.61	0.0	0.04	14.04	0.00	2.128	7.54	0.20	4.1	95.8	0.1	0.86	0.79	0.80	0.83	1.26	58582	7664	16	0	6	0	0	logfile
✔	6KNF	0730	2023-08-10	2019-08-05	2.99	3.24	—	3.2	0.007	0.63	0.0	0.05	15.04	0.00	2.015	7.65	8.82	3.6	96.4	0.0	-2.46	0.83	0.91	4.90	3.2	0.005	0.58	0.0	0.05	15.52	0.00	2.017	7.00	5.51	1.7	98.3	0.0	-0.70	0.93	0.83	0.92	4.37	7749	1002	6	0	6	0	0	logfile
✔	7YLV	33918	2023-08-13	2022-07-27	3.91	4.23	4.38	4.3	0.009	0.68	0.0	0.06	10.36	0.00	2.239	1.53	0.03	2.3	97.6	0.2	-0.18	0.55	0.40	0.18	4.3	0.004	1.06	0.0	0.05	15.55	0.01	2.007	25.62	0.68	3.8	96.2	0.1	-0.40	2.25	0.75	0.74	0.17	65495	8564	17	0	0	0	0	logfile
✔	8E2F	27834	2023-08-12	2022-08-15	2.47	2.75	2.45	2.7	0.003	0.62	0.0	0.04	16.35	0.00	2.040	6.66	1.58	3.0	97.0	0.0	1.05	0.58	0.82	4.21	2.7	0.004	0.57	0.0	0.04	16.59	0.00	1.823	6.66	1.73	2.7	97.3	0.0	1.68	0.37	0.61	0.84	3.95	12305	771	1	0	0	0	6207	logfile
✔	8GRQ	34212	2023-08-14	2022-09-02	3.87	4.28	3.85	3.8	0.004	0.67	0.0	0.04	25.51	0.00	2.125	14.63	0.22	3.2	96.8	0.0	0.64	0.87	0.82	0.93	3.8	0.004	0.87	0.0	0.04	27.50	0.01	2.113	21.84	1.10	5.3	94.6	0.1	0.07	0.73	0.87	0.83	0.79	14563	1084	15	294	4	0	0	logfile
✔	7ALW	11820	2023-08-27	2020-10-07	3.7	3.77	3.62	3.7	0.010	0.96	0.0	0.05	15.64	0.00	2.150	15.88	0.98	17.3	82.4	0.3	-6.45	0.81	0.86	2.68	3.7	0.003	0.77	0.0	0.05	17.83	0.00	2.195	13.13	0.27	10.5	89.2	0.3	-2.80	1.01	0.79	0.84	1.53	50148	6192	18	0	0	0	0	logfile
✔	6W6V	21564	2023-08-18	2020-03-17	3.0	3.67	—	3.6	0.004	0.63	0.0	0.04	14.19	0.00	2.092	6.70	0.05	10.9	89.1	0.0	-2.45	0.70	0.81	2.34	3.6	0.003	0.61	0.0	0.04	15.94	0.00	2.154	7.21	1.53	8.0	92.0	0.0	-1.36	0.70	0.68	0.80	1.83	24850	2306	11	294	0	0	0	logfile
✔	8EX9	28655	2023-08-09	2022-10-25	2.96	3.27	3.00	3.2	0.003	0.49	0.0	0.03	17.73	0.00	2.200	13.65	0.79	4.3	95.7	0.0	-1.52	0.60	0.71	4.83	3.2	0.004	0.59	0.0	0.03	18.38	0.00	2.138	14.51	3.17	4.9	95.1	0.0	-0.86	0.26	0.60	0.72	4.45	4199	166	4	139	0	0	0	logfile
✔	7XDA	33140	2023-08-14	2022-03-26	2.98	3.15	3.14	3.1	0.005	0.54	0.0	0.04	16.34	0.00	1.978	4.13	1.85	6.3	93.6	0.1	-3.63	0.66	0.84	3.84	3.1	0.003	0.57	0.0	0.04	16.90	0.00	2.013	4.45	3.12	4.3	95.6	0.1	-0.66	0.65	0.65	0.86	3.82	15729	1071	5	0	0	0	7646	logfile
✔	6S6B	10102	2023-08-14	2019-07-02	2.75	3.35	3.07	3.2	0.005	0.76	0.0	0.05	14.62	0.00	1.961	19.06	0.15	15.3	84.3	0.4	-5.13	0.77	0.82	2.59	3.2	0.003	0.80	0.0	0.05	16.91	0.00	2.118	17.67	2.94	13.3	86.6	0.1	-2.72	0.70	0.72	0.83	1.90	66914	8194	39	51	1	0	0	logfile
✘	7RBU	24402	2023-08-09	2021-07-06	3.7	2.38	—	2.2	0.006	0.80	0.0	0.05	12.53	0.00	2.167	6.95	0.00	9.1	90.7	0.2	-2.50	0.74	0.77	4.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4107	510	6	0	7	0	0	logfile
✔	8DZJ	27801	2023-08-11	2022-08-07	2.9	3.60	2.84	3.0	0.004	0.60	0.0	0.04	16.53	0.00	2.209	12.65	0.38	1.5	98.5	0.0	0.94	0.77	0.71	3.07	3.0	0.003	0.62	0.0	0.04	17.22	0.00	2.152	14.26	1.13	2.3	97.7	0.0	1.39	0.56	0.85	0.81	2.89	9030	613	6	190	1	0	0	logfile
✘	8FPJ	29366	2023-08-18	2023-01-04	2.74	2.94	2.78	3.0	0.004	0.69	0.0	0.04	14.26	0.00	2.008	5.89	0.00	5.7	94.3	0.0	-0.24	0.69	0.82	2.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25960	1596	6	0	1	0	13143	logfile
✔	7UKH	26581	2023-08-12	2022-04-01	2.33	2.55	2.38	2.5	0.004	0.61	0.0	0.04	17.88	0.00	2.035	7.98	1.80	2.9	97.1	0.0	0.99	0.77	0.85	3.75	2.5	0.003	0.54	0.0	0.04	18.19	0.00	2.189	7.26	1.41	2.6	97.4	0.0	1.49	0.29	0.75	0.86	3.77	12340	1536	16	0	16	0	0	logfile
✔	6W1N	21513	2023-08-09	2020-03-04	4.0	4.43	4.16	4.1	0.002	0.55	0.0	0.04	12.17	0.00	2.226	6.50	0.41	1.4	98.6	0.0	-0.42	0.72	0.75	—	4.1	0.003	0.76	0.0	0.04	14.15	0.00	2.112	11.82	0.29	2.8	97.2	0.0	0.86	0.75	0.74	0.80	—	105232	13984	12	0	1320	0	0	logfile
✔	7XS7	33423	2023-08-12	2022-05-13	3.2	3.43	3.32	3.4	0.004	0.71	0.0	0.04	14.66	0.00	1.946	3.69	0.16	4.2	95.6	0.3	-2.73	0.69	0.86	3.61	3.4	0.003	0.54	0.0	0.04	15.46	0.00	2.165	2.53	0.31	5.0	94.9	0.1	0.11	0.98	0.67	0.87	2.98	12270	1458	4	0	42	0	0	logfile
✔	8FZQ	29637	2023-08-11	2023-01-29	4.3	3.97	4.18	4.1	0.002	0.53	0.0	0.04	14.56	0.00	1.999	8.42	0.10	2.1	97.9	0.0	1.00	0.59	0.69	—	4.1	0.002	0.57	0.0	0.04	14.68	0.00	1.981	10.19	0.00	2.6	97.4	0.0	0.51	2.13	0.63	0.77	—	9244	1133	1	0	23	0	0	logfile

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