Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UVT	26816	2023-02-20	2022-05-02	3.9	4.17	4.00	4.1	0.001	0.41	0.0	0.02	16.13	0.00	1.897	6.61	0.00	0.0	0.0	0.0	—	0.76	0.74	—	4.1	0.006	0.70	0.0	0.04	17.94	0.01	1.892	21.35	0.00	0.0	0.0	0.0	—	0.48	0.77	0.76	—	12409	0	1	386	0	0	4149	logfile
✔	7JSH	22454	2023-02-18	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.005	1.30	0.0	0.05	13.69	0.01	1.942	27.17	0.00	31.8	67.9	0.3	-5.48	6.11	0.73	0.61	—	7916	1904	8	15	0	0	0	logfile
✔	7oH6	12895	2023-02-20	2021-05-09	3.0	3.69	3.20	3.6	0.003	1.12	0.0	0.04	11.63	0.00	1.720	4.93	1.20	4.0	96.0	0.0	-2.49	0.65	0.74	2.83	3.6	0.003	0.83	0.0	0.04	14.19	0.00	1.896	7.87	2.08	3.3	96.7	0.1	-0.28	1.22	0.65	0.75	2.28	11552	1414	7	0	10	2	0	logfile
✔	7EW7	31349	2023-02-19	2021-05-24	3.27	3.91	—	3.9	0.003	0.59	0.0	0.04	13.52	0.00	2.016	6.68	0.71	3.6	96.4	0.0	-2.17	0.56	0.74	2.49	3.9	0.002	0.54	0.0	0.04	15.58	0.00	2.134	6.68	0.20	3.8	96.2	0.0	-0.29	0.95	0.60	0.78	1.96	9004	1144	6	0	1	0	0	logfile
✔	6LQJ	0947	2023-02-22	2020-01-13	3.24	3.40	3.06	3.4	0.007	0.74	0.0	0.05	16.29	0.00	2.216	11.27	5.34	9.1	90.9	0.0	-3.28	0.74	0.84	2.87	3.4	0.003	0.62	0.0	0.05	16.76	0.00	2.169	12.21	0.38	8.5	91.5	0.0	-0.64	0.46	0.73	0.85	2.73	17100	2214	18	0	0	0	0	logfile
✔	7F1R	31423	2023-02-18	2021-06-09	3.0	3.21	—	3.2	0.002	0.48	0.0	0.04	11.21	0.00	2.224	8.00	0.46	1.5	98.5	0.0	-2.21	0.59	0.70	1.80	3.2	0.004	0.71	0.0	0.04	15.11	0.00	2.161	13.20	3.82	3.9	96.1	0.0	0.37	1.26	0.63	0.80	2.53	6621	894	4	0	0	0	0	logfile
✔	7WVW	32860	2023-02-18	2022-02-11	3.1	3.26	—	3.2	0.002	0.50	0.0	0.04	13.51	0.00	2.197	9.28	0.00	1.5	98.5	0.0	0.78	0.62	0.77	2.19	3.2	0.003	0.58	0.0	0.04	15.56	0.00	2.170	11.45	0.26	2.5	97.5	0.0	0.69	1.18	0.65	0.83	2.47	7169	924	5	0	0	0	0	logfile
✔	8DN8	27556	2023-02-20	2022-07-10	3.7	4.03	3.79	4.0	0.003	0.61	0.0	0.04	13.76	0.00	2.157	9.82	0.00	6.0	94.0	0.0	-0.14	0.72	0.82	1.16	3.9	0.003	0.66	0.0	0.04	16.11	0.00	2.185	11.45	0.60	5.6	94.4	0.0	-0.15	0.57	0.72	0.81	1.19	10638	1300	6	0	2	0	0	logfile
✔	7XMT	33304	2023-02-18	2022-04-26	2.8	2.93	2.65	3.0	0.004	0.56	0.0	0.04	9.47	0.00	2.267	6.39	0.00	3.0	97.0	0.0	-3.88	0.55	0.63	1.96	2.9	0.003	0.69	0.0	0.04	14.98	0.00	2.099	13.79	1.76	3.4	96.6	0.0	-0.75	1.31	0.60	0.74	2.91	8137	1068	6	0	1	0	0	logfile
✔	7KHW	22881	2023-02-24	2020-10-22	3.4	3.56	—	3.6	0.008	0.97	0.0	0.05	13.30	0.00	1.645	21.96	0.00	11.6	88.4	0.0	-1.82	0.60	0.77	1.48	3.6	0.003	0.62	0.0	0.04	16.09	0.00	2.140	6.84	0.22	6.8	93.2	0.0	0.70	0.64	0.63	0.82	1.65	65550	8700	50	0	0	0	0	logfile
✘	7AHE	11784	2023-02-19	2020-09-24	4.1	4.22	4.11	4.1	0.009	1.23	0.0	0.09	12.74	0.00	2.205	16.70	0.45	9.6	90.4	0.0	-5.40	0.69	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10060	1308	5	0	1	0	0	logfile
✔	7oo6	13006	2023-02-21	2021-05-26	3.1	2.92	2.88	3.0	0.005	0.63	0.0	0.05	10.97	0.00	2.327	9.05	0.00	1.5	98.5	0.0	2.48	0.63	0.80	2.67	3.0	0.003	0.46	0.0	0.04	14.12	0.00	2.368	7.86	0.07	1.2	98.8	0.0	2.08	1.13	0.60	0.80	2.38	14546	1827	14	0	14	0	0	logfile
✔	7L2P	23136	2023-02-22	2020-12-17	2.6	2.86	2.54	2.9	0.006	0.97	0.0	0.27	12.46	0.00	2.080	1.42	0.76	6.5	93.4	0.1	0.13	0.60	0.79	3.53	2.9	0.005	0.66	0.0	0.04	15.94	0.00	2.164	7.90	1.82	6.8	93.1	0.0	0.81	3.17	0.61	0.84	3.61	18448	2234	8	0	9	0	0	logfile
✔	7S06	24785	2023-02-18	2021-08-30	3.3	3.59	3.40	3.6	0.003	0.63	0.0	0.05	15.40	0.00	2.199	7.68	0.00	6.2	93.8	0.0	0.97	0.65	0.78	2.56	3.6	0.003	0.65	0.0	0.05	17.50	0.00	2.222	7.29	0.35	6.3	93.7	0.0	0.88	1.06	0.69	0.83	2.32	7862	918	8	0	14	0	0	logfile
✔	3JD0	6631	2023-02-24	2016-03-28	3.47	3.93	—	3.8	0.012	0.82	0.0	0.05	10.31	0.00	1.989	15.40	0.00	13.3	85.9	0.8	-5.89	0.85	0.82	3.48	3.8	0.004	0.70	0.0	0.04	14.28	0.00	2.128	14.60	0.16	4.9	94.9	0.1	0.69	2.53	0.85	0.86	2.35	23478	2976	12	0	6	0	0	logfile
✔	7LMA	23437	2023-02-22	2021-02-05	3.3	3.45	—	3.4	0.004	0.56	0.0	0.04	16.77	0.00	2.202	6.67	0.91	4.3	95.7	0.0	-2.64	0.73	0.82	2.57	3.4	0.002	0.55	0.0	0.04	17.83	0.00	2.068	7.82	0.24	2.7	97.3	0.0	0.22	0.56	0.76	0.84	1.91	18672	1837	9	170	1	0	0	logfile
✔	7TJS	25930	2023-02-24	2022-01-17	3.2	3.47	3.27	3.4	0.003	0.60	0.0	0.05	12.62	0.00	1.901	1.77	0.00	1.5	98.5	0.0	0.55	0.78	0.85	3.14	3.4	0.006	0.65	0.0	0.05	15.00	0.00	1.883	5.67	0.16	2.6	97.4	0.0	0.79	0.54	0.73	0.86	2.54	23539	3102	12	0	8	0	0	logfile
✔	7EVY	31341	2023-02-19	2021-05-24	2.98	3.64	—	3.6	0.017	0.62	0.0	0.16	12.40	0.00	2.061	8.78	0.91	3.1	96.9	0.0	-1.68	0.58	0.77	2.30	3.6	0.004	0.65	0.0	0.04	15.39	0.00	2.171	8.06	3.35	4.3	95.7	0.0	-0.27	0.49	0.53	0.74	2.59	9024	1144	6	0	2	0	0	logfile
✔	6NTS	0510	2023-02-19	2019-01-30	3.63	4.31	2.98	3.6	0.016	0.51	0.0	0.03	13.23	0.00	1.917	2.06	0.00	3.8	96.2	0.0	-2.08	0.89	0.77	0.59	3.6	0.002	0.62	0.0	0.04	15.01	0.00	2.074	8.23	0.00	2.2	97.8	0.0	0.88	2.31	0.92	0.85	1.06	9956	1240	5	0	3	0	0	logfile
✔	7EJX	31164	2023-02-18	2021-04-02	2.4	2.91	—	2.8	0.004	0.71	0.0	0.05	15.95	0.00	2.016	9.64	1.25	2.8	97.2	0.0	1.71	0.67	0.85	4.25	2.8	0.004	0.60	0.0	0.04	16.70	0.00	2.124	7.83	2.50	2.0	98.0	0.0	1.72	0.44	0.67	0.87	4.36	8334	1071	6	0	4	2	0	logfile

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