Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KJX	22901	2021-06-01	2020-10-26	3.1	3.33	—	3.3	0.006	0.66	0.0	0.04	14.07	0.01	2.100	5.38	0.12	2.3	97.7	0.0	0.94	0.71	0.81	2.85	3.3	0.003	0.49	0.0	0.04	15.39	0.00	2.071	7.23	0.00	2.3	97.7	0.0	0.71	0.47	0.76	0.85	3.04	8589	948	5	44	2	0	0	logfile
✔	6X0V	21985	2021-06-01	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	13.37	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.49	0.0	0.04	11.82	0.00	2.364	17.83	0.00	4.0	96.0	0.0	2.26	1.18	0.40	0.74	—	1384	211	4	0	0	0	62	logfile
✔	6NT9	0506	2021-06-02	2019-01-28	3.3	3.42	—	3.3	0.010	0.89	0.0	0.06	9.66	0.01	2.250	1.52	0.18	3.5	96.5	0.0	-2.03	0.81	0.86	3.98	3.3	0.002	0.49	0.0	0.04	14.34	0.00	2.230	4.45	0.09	1.8	98.2	0.0	2.84	0.61	0.83	0.87	3.02	9906	1228	4	0	0	0	0	logfile
✔	6o0X	0583	2021-06-02	2019-02-17	3.28	3.97	—	3.6	0.005	0.74	0.0	0.04	16.67	0.01	2.317	2.65	0.14	6.2	93.8	0.0	-4.06	0.85	0.88	2.75	3.6	0.002	0.49	0.0	0.03	17.13	0.00	2.221	5.80	0.14	3.9	96.1	0.0	-0.03	1.22	0.84	0.88	2.57	11257	1112	5	150	0	0	0	logfile
✔	7JLW	22382	2021-06-05	2020-07-30	2.5	2.52	2.49	2.5	0.009	1.07	0.0	0.07	15.05	0.00	2.377	3.99	1.14	1.1	98.9	0.0	0.51	0.62	0.82	4.64	2.5	0.002	0.49	0.0	0.04	15.54	0.00	2.070	6.97	1.28	0.8	99.2	0.0	3.29	0.77	0.65	0.85	4.08	40284	2316	36	0	132	204	18720	logfile
✔	7K0J	22599	2021-06-01	2020-09-04	3.1	3.65	—	3.6	0.006	0.70	0.0	0.05	13.41	0.00	2.210	5.54	0.00	3.2	96.8	0.0	0.19	0.64	0.80	3.76	3.6	0.003	0.49	0.0	0.04	14.51	0.00	2.235	5.02	0.12	2.3	97.7	0.0	1.08	0.39	0.63	0.80	3.18	7683	977	5	0	3	0	0	logfile
✔	6T0U	10359	2021-06-02	2019-10-03	3.12	3.20	3.13	3.2	0.005	0.69	0.0	0.05	14.30	0.01	2.273	3.95	5.25	3.4	96.6	0.0	-3.41	0.68	0.86	3.55	3.2	0.002	0.50	0.0	0.04	15.69	0.00	2.132	7.69	0.33	3.2	96.8	0.0	0.55	0.59	0.69	0.87	3.00	14176	1695	4	23	0	0	0	logfile
✔	6U6D	20663	2021-06-02	2019-08-29	3.6	3.73	—	3.7	0.002	0.51	0.0	0.04	12.89	0.00	2.227	6.53	0.00	3.4	96.6	0.0	-4.06	0.79	0.84	1.77	3.7	0.002	0.50	0.0	0.04	15.43	0.00	2.157	6.44	0.60	2.8	97.2	0.0	0.04	0.51	0.82	0.84	2.07	16770	2156	10	0	2	0	0	logfile
✔	7LMA	23437	2021-06-02	2021-02-05	3.3	3.45	—	3.4	0.004	0.56	0.0	0.04	16.77	0.00	2.202	6.61	0.91	4.3	95.7	0.0	-2.64	0.73	0.82	2.57	3.4	0.002	0.50	0.0	0.04	17.57	0.00	2.123	6.86	0.18	3.0	97.0	0.0	0.25	0.59	0.77	0.84	1.88	18672	1837	9	170	1	0	0	logfile
✔	6ZBG	11154	2021-06-02	2020-06-08	3.2	3.97	3.37	3.6	0.010	1.15	0.0	0.07	13.62	0.01	2.468	1.13	0.00	1.1	98.9	0.0	0.72	0.84	0.78	2.20	3.6	0.002	0.50	0.0	0.03	15.38	0.00	2.148	5.73	0.18	0.9	99.1	0.0	4.34	1.60	0.86	0.81	1.54	19534	1160	4	0	0	0	9902	logfile
✔	7C2K	30275	2021-06-02	2020-05-07	2.93	3.24	3.00	3.1	0.007	0.68	0.0	0.04	13.79	0.00	2.256	7.20	0.00	4.5	95.5	0.0	-2.91	0.78	0.89	4.22	3.1	0.002	0.50	0.0	0.04	15.26	0.00	2.219	5.95	1.27	3.9	96.1	0.0	-0.33	0.44	0.75	0.89	3.84	10692	1256	7	31	3	0	0	logfile
✔	7NRi	12546	2021-06-03	2021-03-03	3.03	3.49	3.11	3.3	0.007	0.69	2.0	0.05	14.47	0.00	1.984	3.80	0.32	6.2	93.7	0.1	-3.46	0.78	0.84	3.97	3.3	0.002	0.50	0.0	0.04	15.60	0.00	2.035	3.20	0.16	3.4	96.6	0.0	-0.18	0.71	0.77	0.87	3.55	23143	1504	6	0	1	0	11351	logfile
✔	7KJW	22900	2021-06-01	2020-10-26	2.9	3.11	—	3.1	0.006	0.54	0.0	0.04	13.99	0.00	2.198	4.70	0.87	2.6	97.3	0.1	0.64	0.76	0.83	4.14	3.1	0.003	0.50	0.0	0.04	15.97	0.00	2.267	6.87	1.49	2.2	97.8	0.0	0.68	0.95	0.78	0.86	4.16	8561	949	5	44	2	0	0	logfile
✔	7JGF	22325	2021-06-01	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.40	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.7	0.002	0.50	0.0	0.04	13.46	0.00	2.074	52.91	0.41	6.3	93.7	0.0	0.95	0.80	0.42	0.46	—	4477	532	1	0	0	0	30	logfile
✔	6PUZ	20485	2021-06-02	2019-07-18	2.8	3.10	2.87	3.1	0.008	0.87	0.0	0.05	19.46	0.01	0.000	5.85	0.19	2.2	97.8	0.0	-2.67	0.74	0.89	4.50	3.0	0.004	0.50	0.0	0.04	21.03	0.00	0.000	7.65	0.58	1.7	98.3	0.0	0.70	0.39	0.70	0.90	4.04	11702	1230	28	72	10	340	0	logfile
✔	6U3Q	20630	2021-06-10	2019-08-22	2.46	3.11	—	2.8	0.009	0.61	0.0	0.04	12.86	0.00	2.189	3.45	4.15	3.1	96.9	0.0	-1.52	0.80	0.92	5.73	2.8	0.003	0.50	0.0	0.04	14.28	0.00	2.179	4.68	2.18	2.2	97.8	0.0	-0.32	0.35	0.80	0.92	5.02	248280	31140	60	0	0	0	0	logfile
✔	7CMV	30411	2021-06-01	2020-07-29	2.7	2.91	—	2.9	0.008	0.50	0.0	0.04	12.56	0.00	2.032	3.78	0.00	1.5	98.5	0.0	2.95	0.61	0.78	2.85	2.9	0.002	0.50	0.0	0.04	15.64	0.00	2.192	6.19	1.56	1.4	98.6	0.0	1.89	0.47	0.63	0.82	2.83	8775	1123	5	0	1	0	0	logfile
✔	7A2i	11625	2021-06-01	2020-08-18	3.3	3.94	3.40	3.8	0.004	0.62	0.0	0.04	12.87	0.00	2.232	7.09	0.00	7.0	93.0	0.0	-1.94	0.81	0.84	2.69	3.8	0.002	0.50	0.0	0.04	14.09	0.00	2.248	5.52	0.00	3.8	96.2	0.0	-0.19	1.21	0.82	0.85	2.30	9196	1217	2	0	1	0	0	logfile
✔	6U5N	20650	2021-06-02	2019-08-28	3.2	3.32	—	3.3	0.006	0.76	0.0	0.05	14.13	0.01	1.907	2.73	0.15	4.8	95.2	0.0	-3.09	0.72	0.84	2.62	3.3	0.003	0.50	0.0	0.05	15.96	0.00	2.134	5.27	0.15	2.8	97.2	0.0	1.02	0.54	0.68	0.84	2.29	13262	1776	24	0	24	8	0	logfile
✔	6UZY	20964	2021-06-02	2019-11-15	3.38	3.52	—	3.5	0.009	0.97	7.0	0.07	15.78	0.01	2.265	6.91	0.00	2.6	97.4	0.0	-3.44	0.66	0.82	2.53	3.5	0.003	0.50	0.0	0.04	15.71	0.00	2.262	5.77	0.28	2.6	97.4	0.0	1.72	0.35	0.66	0.83	2.01	16212	1946	14	0	21	0	0	logfile

• ← previous
• Page 2 of 253
• next →