Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KJX	22901	2021-12-01	2020-10-26	3.1	3.33	—	3.3	0.006	0.72	0.0	0.04	14.00	0.01	2.100	5.38	0.12	2.3	97.7	0.0	0.94	0.71	0.81	2.85	3.3	0.003	0.52	0.0	0.04	15.40	0.00	1.995	8.49	0.00	2.6	97.4	0.0	0.73	0.46	0.77	0.86	3.03	8589	948	5	44	2	0	0	logfile
✔	7AAP	11692	2021-12-01	2020-09-04	2.5	2.71	2.48	2.8	0.006	0.53	0.0	0.04	12.44	0.00	2.097	3.69	0.20	1.5	98.5	0.0	0.59	0.79	0.87	4.74	2.7	0.003	0.52	0.0	0.04	14.63	0.00	2.181	5.75	0.81	2.0	98.0	0.0	0.43	0.82	0.80	0.90	4.36	9446	1120	9	21	7	0	0	logfile
✔	7oDF	12827	2021-12-01	2021-04-29	2.66	3.20	—	3.1	0.003	0.49	0.0	0.04	16.48	0.00	1.952	6.12	0.00	1.4	98.6	0.0	1.47	0.75	0.83	3.58	3.1	0.003	0.52	0.0	0.04	17.77	0.00	2.010	8.11	2.74	2.1	97.9	0.0	1.74	0.89	0.70	0.80	3.35	6847	703	7	78	2	5	0	logfile
✔	7K0J	22599	2021-12-01	2020-09-04	3.1	3.65	—	3.6	0.006	0.71	0.0	0.05	13.14	0.00	2.210	5.54	0.00	3.2	96.8	0.0	0.19	0.64	0.80	3.76	3.6	0.004	0.52	0.0	0.04	14.55	0.00	2.210	5.28	0.12	2.3	97.7	0.0	0.85	0.40	0.64	0.81	3.20	7683	977	5	0	3	0	0	logfile
✔	7KA3	22757	2021-12-02	2020-09-29	3.3	3.20	—	3.4	0.004	0.76	0.0	0.04	13.66	0.01	2.294	3.99	0.36	2.9	97.1	0.0	-2.21	0.76	0.82	1.82	3.3	0.003	0.52	0.0	0.04	15.76	0.00	2.240	6.98	0.00	4.4	95.6	0.0	1.93	0.47	0.77	0.84	0.94	10472	1372	4	0	0	0	0	logfile
✔	7K0L	22601	2021-12-01	2020-09-04	3.4	3.83	—	3.7	0.004	0.69	0.0	0.04	12.60	0.00	2.141	4.28	0.00	1.9	98.1	0.0	1.09	0.74	0.87	3.05	3.7	0.003	0.52	0.0	0.04	13.90	0.00	2.200	5.46	0.25	2.1	97.9	0.0	0.87	1.05	0.74	0.88	2.79	7619	964	4	0	2	0	0	logfile
✔	7KJR	22898	2021-12-01	2020-10-26	2.08	2.52	2.15	2.4	0.007	0.89	0.0	0.05	16.44	0.00	2.254	7.60	0.25	1.8	98.2	0.0	1.13	0.68	0.87	5.29	2.4	0.003	0.52	0.0	0.04	15.79	0.00	2.101	9.36	0.74	2.1	97.9	0.0	1.36	0.39	0.67	0.87	4.69	3840	448	8	0	2	122	0	logfile
✔	6YE4	10789	2021-12-01	2020-03-24	3.2	3.33	3.07	3.3	0.026	1.69	0.0	0.10	14.61	0.01	2.373	3.02	0.00	0.9	99.1	0.0	-3.36	0.73	0.88	2.50	3.3	0.003	0.52	0.0	0.03	16.50	0.00	2.347	5.02	0.22	2.4	97.6	0.0	3.50	0.93	0.67	0.87	1.40	9140	1180	10	0	5	0	0	logfile
✔	7A2i	11625	2021-12-01	2020-08-18	3.3	3.94	3.40	3.8	0.004	0.62	0.0	0.04	12.87	0.00	2.232	7.09	0.00	7.0	93.0	0.0	-1.94	0.81	0.84	2.69	3.8	0.003	0.52	0.0	0.04	14.05	0.00	2.096	6.14	0.00	4.4	95.6	0.0	-0.27	1.20	0.82	0.86	2.63	9196	1217	2	0	1	0	0	logfile
✔	7RTU	24689	2021-12-01	2021-08-15	3.89	4.06	—	4.1	0.003	0.51	0.0	0.04	14.84	0.00	2.175	7.03	0.16	3.1	96.9	0.0	4.32	0.55	0.69	0.15	4.1	0.003	0.52	0.0	0.04	16.76	0.00	2.223	7.11	0.47	2.5	97.5	0.0	4.38	0.29	0.61	0.73	0.38	5962	754	6	0	12	0	0	logfile
✔	6TYi	20583	2021-12-01	2019-08-09	3.3	3.55	—	3.5	0.012	1.03	0.0	0.05	15.89	0.00	1.796	11.31	0.43	4.8	95.1	0.1	-0.84	0.70	0.81	1.90	3.5	0.002	0.52	0.0	0.03	17.16	0.00	2.221	6.27	0.11	2.8	97.2	0.0	3.28	1.18	0.70	0.81	1.28	9184	1186	11	0	4	0	0	logfile
✔	7BH9	12187	2021-12-01	2021-01-11	2.9	3.58	2.91	3.4	0.007	0.76	0.0	0.05	13.23	0.00	2.021	5.17	0.33	4.9	95.1	0.0	-3.10	0.85	0.88	3.70	3.4	0.002	0.53	0.0	0.04	15.21	0.00	2.179	3.33	1.00	2.1	97.9	0.0	0.84	0.39	0.81	0.85	2.44	5876	730	3	0	4	0	0	logfile
✔	6M7D	30129	2021-12-01	2020-03-18	2.9	2.82	—	2.8	0.010	1.03	0.0	0.07	13.84	0.00	2.157	15.48	0.58	2.4	97.6	0.0	-0.46	0.35	0.86	4.08	2.8	0.003	0.53	0.0	0.04	16.07	0.00	2.239	8.59	1.46	1.5	98.5	0.0	2.10	0.84	0.35	0.87	3.01	3280	412	2	6	0	0	0	logfile
✔	6XMP	22260	2021-12-01	2020-06-30	3.5	4.29	3.63	4.0	0.005	0.54	0.0	0.04	13.08	0.00	2.192	6.56	0.00	2.9	97.1	0.0	-1.66	0.72	0.84	1.55	4.0	0.003	0.53	0.0	0.04	14.38	0.00	2.153	6.67	0.11	3.3	96.7	0.0	1.03	0.35	0.71	0.86	1.45	8545	1086	1	0	12	0	0	logfile
✔	6PoS	20418	2021-12-01	2019-07-05	4.12	4.39	—	4.2	0.003	0.68	0.0	0.04	11.58	0.01	2.116	2.48	0.00	0.1	99.9	0.0	-2.43	0.80	0.77	—	4.2	0.002	0.53	0.0	0.04	13.00	0.00	1.991	8.64	0.03	3.0	97.0	0.0	0.37	1.54	0.82	0.80	—	53503	3425	20	0	13	0	26853	logfile
✔	6NT9	0506	2021-12-01	2019-01-28	3.3	3.42	—	3.3	0.010	0.89	0.0	0.06	9.66	0.01	2.250	1.52	0.18	3.5	96.5	0.0	-2.03	0.81	0.86	3.98	3.3	0.004	0.53	0.0	0.04	14.49	0.00	2.218	4.29	0.36	1.8	98.2	0.0	2.41	0.59	0.82	0.87	3.11	9906	1228	4	0	0	0	0	logfile
✔	5oH0	3809	2021-12-01	2017-07-13	4.2	4.36	—	4.3	0.003	0.75	0.0	0.05	8.94	0.00	2.295	3.32	0.00	1.9	98.1	0.0	-3.74	0.64	0.84	—	4.2	0.003	0.53	0.0	0.04	10.58	0.00	2.225	5.25	0.00	2.8	97.2	0.0	-2.07	0.63	0.64	0.86	—	6588	942	6	0	0	0	0	logfile
✔	7E7Z	31005	2021-12-01	2021-02-28	3.2	3.35	2.96	3.4	0.002	0.51	0.0	0.04	13.40	0.00	2.240	9.87	0.00	5.6	94.4	0.0	-0.12	0.63	0.81	1.86	3.3	0.003	0.53	0.0	0.04	15.12	0.00	2.223	8.28	0.23	5.7	94.3	0.0	1.59	0.43	0.57	0.80	1.77	7808	992	4	0	0	0	0	logfile
✔	6X15	21989	2021-12-01	2020-05-18	3.05	3.20	—	3.2	0.008	1.25	0.0	0.05	19.04	0.01	2.281	3.63	0.00	3.1	96.9	0.0	-3.80	0.73	0.87	2.90	3.2	0.002	0.53	0.0	0.04	15.28	0.00	2.174	6.17	0.00	2.7	97.3	0.0	1.85	0.44	0.73	0.88	2.48	10026	1260	9	0	51	9	0	logfile
✔	7AWA	11928	2021-12-01	2020-11-06	3.5	3.83	—	3.6	0.003	0.64	0.0	0.04	14.22	0.00	2.126	6.77	0.00	5.8	94.2	0.0	-2.52	0.57	0.81	2.14	3.6	0.002	0.53	0.0	0.04	14.89	0.00	2.160	6.21	0.00	2.8	97.2	0.0	-0.31	1.17	0.54	0.80	1.47	5310	328	1	0	0	0	2703	logfile

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