Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PW4	13674	2023-11-17	2021-10-06	3.27	3.69	—	3.5	0.003	0.62	0.0	0.15	13.04	0.00	2.030	4.58	0.00	2.8	97.2	0.0	1.69	0.79	0.82	2.05	3.5	0.002	0.44	0.0	0.03	14.23	0.00	1.933	3.81	0.06	2.5	97.5	0.0	1.97	0.89	0.81	0.85	1.77	18965	2435	5	0	199	0	0	logfile
✔	7MGM	23829	2023-11-18	2021-04-12	3.1	3.35	3.11	3.0	0.004	0.55	0.0	0.04	14.02	0.00	1.874	5.80	0.04	2.4	97.6	0.0	0.78	0.87	0.89	2.62	3.0	0.002	0.44	0.0	0.04	14.91	0.00	1.983	5.55	0.07	1.9	98.1	0.0	1.60	0.21	0.87	0.90	2.28	24079	2964	4	0	6	0	0	logfile
✔	7PXE	13700	2023-11-20	2021-10-08	2.38	2.90	2.41	2.7	0.005	0.73	0.0	0.04	16.55	0.00	2.151	5.31	1.94	1.0	99.0	0.0	1.17	0.79	0.87	3.74	2.7	0.002	0.45	0.0	0.04	16.00	0.00	2.170	4.81	2.07	1.4	98.6	0.0	1.73	0.33	0.79	0.89	4.13	28928	3540	12	0	36	136	0	logfile
✔	7TC7	25804	2023-11-17	2021-12-23	2.9	2.75	—	2.9	0.007	0.58	0.0	0.04	13.89	0.00	1.792	14.53	0.17	2.3	97.7	0.0	1.00	0.72	0.86	4.97	2.9	0.003	0.45	0.0	0.04	15.84	0.00	1.868	14.91	0.79	2.2	97.8	0.0	1.54	1.09	0.73	0.87	4.39	20567	2113	8	0	4	0	3200	logfile
✔	8BLY	16115	2023-11-14	2022-11-10	3.2	3.21	3.09	3.1	0.002	0.47	0.0	0.04	15.67	0.00	1.971	10.01	0.18	1.5	98.5	0.0	1.29	0.83	0.86	2.22	3.1	0.002	0.45	0.0	0.04	15.88	0.00	1.933	9.09	0.25	1.3	98.7	0.0	1.59	0.27	0.84	0.88	2.02	54334	7336	28	0	28	0	0	logfile
✔	7XNH	33315	2023-11-17	2022-04-28	3.1	2.98	2.73	2.9	0.006	1.12	0.0	0.05	13.57	0.01	2.144	6.68	0.61	0.6	99.4	0.0	-0.23	0.72	0.87	4.77	2.9	0.002	0.45	0.0	0.04	13.55	0.00	2.333	4.76	0.15	0.8	99.2	0.0	2.76	0.97	0.73	0.84	3.00	19224	2172	24	0	132	0	0	logfile
✔	8EL8	28224	2023-11-13	2022-09-23	3.2	3.53	3.33	3.5	0.007	0.70	0.0	0.04	13.20	0.00	2.403	2.38	0.00	1.7	98.3	0.0	0.75	0.66	0.85	2.31	3.5	0.003	0.45	0.0	0.04	15.16	0.00	2.353	2.27	0.00	2.4	97.6	0.0	1.11	0.26	0.67	0.85	2.07	4467	597	2	0	0	0	0	logfile
✔	7Z4J	14499	2023-11-16	2022-03-03	2.99	3.74	3.13	3.4	0.005	0.48	0.0	0.04	13.43	0.00	1.860	7.21	2.15	2.2	97.8	0.0	0.96	0.85	0.87	2.76	3.4	0.003	0.45	0.0	0.03	14.64	0.00	1.919	7.28	1.24	2.2	97.8	0.0	1.42	0.49	0.85	0.86	2.54	13948	1345	10	142	4	8	0	logfile
✔	8DNY	27584	2023-11-13	2022-07-12	2.85	3.15	2.84	3.1	0.008	0.68	0.0	0.04	15.52	0.01	2.287	8.04	0.00	2.2	97.8	0.0	2.03	0.61	0.81	3.14	3.1	0.003	0.45	0.0	0.04	16.14	0.00	2.081	22.10	1.09	3.9	96.1	0.0	2.67	1.13	0.62	0.84	2.37	4336	558	4	0	1	0	5	logfile
✔	7UB0	26433	2023-11-19	2022-03-14	3.31	3.57	3.27	3.4	0.003	0.51	0.0	0.04	13.20	0.00	2.205	4.98	0.04	2.0	98.0	0.0	-0.12	0.85	0.86	3.45	3.4	0.002	0.45	0.0	0.04	14.11	0.00	2.193	4.96	0.07	2.1	97.9	0.0	0.59	0.22	0.86	0.87	3.21	24993	3109	16	0	50	0	0	logfile
✔	8FA2	28948	2023-11-13	2022-11-25	2.82	2.48	3.15	2.1	0.006	0.55	0.0	0.04	13.54	0.00	2.297	6.56	0.00	1.8	98.2	0.0	-0.12	0.76	0.79	0.72	2.0	0.003	0.45	0.0	0.04	14.46	0.00	2.218	8.87	0.67	0.0	100.0	0.0	5.30	0.38	0.76	0.79	0.78	2577	342	6	0	0	0	0	logfile
✔	7STo	25435	2023-11-19	2021-11-14	3.15	3.45	—	3.3	0.007	0.88	0.0	0.04	10.20	0.00	2.289	1.13	0.15	2.3	97.7	0.0	1.91	0.68	0.82	3.05	3.3	0.003	0.45	0.0	0.04	12.72	0.00	2.199	3.00	0.08	2.7	97.2	0.1	1.79	1.23	0.71	0.87	2.78	25210	1580	4	0	10	0	12268	logfile
✔	6C9i	7436	2023-11-18	2018-01-26	3.09	3.21	—	3.2	0.029	1.48	0.0	0.12	9.22	0.01	2.417	0.81	0.00	0.3	99.6	0.1	2.36	0.79	0.85	4.97	3.2	0.004	0.46	0.0	0.04	15.19	0.00	2.246	5.13	0.16	0.0	100.0	0.0	3.57	2.43	0.72	0.90	3.61	23700	3087	24	0	0	0	0	logfile
✔	7LPC	23476	2023-11-16	2021-02-11	3.06	2.87	2.85	3.1	0.013	1.23	0.0	0.21	20.16	0.00	2.188	5.69	0.00	2.0	98.0	0.0	0.83	0.64	0.80	2.87	3.1	0.002	0.46	0.0	0.04	14.99	0.00	2.267	5.36	0.00	2.6	97.4	0.0	2.24	0.55	0.66	0.84	2.91	15256	1816	8	0	40	0	0	logfile
✔	7PiM	13442	2023-11-15	2021-08-20	4.6	5.02	5.18	4.6	0.002	0.41	0.0	0.03	8.31	0.00	1.900	45.64	0.67	2.0	98.0	0.0	2.23	0.81	0.76	—	4.6	0.002	0.46	0.0	0.03	12.01	0.00	1.854	66.59	0.00	3.2	96.8	0.0	0.47	1.02	0.82	0.76	—	11844	1412	12	0	8	0	524	logfile
✔	8EoB	28333	2023-11-15	2022-10-02	3.1	3.53	3.19	3.4	0.005	0.61	0.0	0.04	11.24	0.00	1.945	7.00	1.78	2.6	97.4	0.0	0.42	0.76	0.84	3.12	3.4	0.002	0.46	0.0	0.04	13.80	0.00	2.018	6.55	0.00	2.3	97.7	0.0	0.85	0.55	0.75	0.83	2.59	10141	1245	4	0	4	0	0	logfile
✔	8iHQ	35452	2023-11-18	2023-02-23	2.71	2.92	2.80	3.0	0.004	0.59	0.0	0.05	16.58	0.01	2.095	4.22	0.62	1.6	98.4	0.0	-0.68	0.69	0.86	4.05	2.9	0.002	0.46	0.0	0.04	16.77	0.00	2.099	3.82	2.19	1.3	98.7	0.0	-0.14	0.19	0.71	0.87	3.87	24128	3192	16	0	16	0	0	logfile
✔	6U5N	20650	2023-11-15	2019-08-28	3.2	3.32	—	3.3	0.006	0.76	0.0	0.05	14.13	0.01	1.907	2.80	0.15	4.8	95.2	0.0	-3.09	0.72	0.84	2.62	3.3	0.002	0.46	0.0	0.05	15.73	0.00	2.145	5.34	0.44	2.3	97.7	0.0	0.97	1.21	0.67	0.84	2.00	13262	1776	24	0	24	8	0	logfile
✔	8ADi	15363	2023-11-18	2022-07-08	3.4	3.67	3.39	3.7	0.003	0.52	0.0	0.04	14.25	0.01	1.491	4.93	0.08	4.4	95.6	0.0	-0.36	0.69	0.83	3.58	3.7	0.003	0.46	0.0	0.04	14.95	0.00	1.958	5.31	0.40	5.3	94.7	0.0	-0.07	0.24	0.66	0.85	3.10	23141	1505	6	0	0	0	11353	logfile
✔	8iXL	35795	2023-11-15	2023-04-01	3.5	3.61	3.45	3.6	0.012	1.48	0.0	0.10	11.65	0.00	2.568	2.07	0.00	0.4	99.6	0.0	2.40	0.71	0.84	1.08	3.6	0.003	0.46	0.0	0.04	15.79	0.00	2.249	5.53	0.63	0.4	99.6	0.0	5.68	1.12	0.68	0.85	1.11	10970	1455	35	0	0	0	0	logfile

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