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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7JGG | 22326 | 2022-05-12 | 2020-07-19 | 4.88 | 8.00 | — | 7.7 | 0.002 | 0.46 | 0.0 | 0.03 | 13.22 | 0.00 | 1.988 | 54.49 | 0.00 | 3.3 | 96.5 | 0.2 | 1.67 | 0.66 | 0.64 | — | 7.5 | 0.002 | 0.46 | 0.0 | 0.03 | 12.61 | 0.00 | 1.976 | 80.83 | 0.00 | 4.5 | 95.5 | 0.0 | 1.72 | 1.70 | 0.67 | 0.69 | — | 4210 | 506 | 1 | 0 | 0 | 0 | 28 | logfile |
✔ | 7SFK | 25091 | 2022-05-12 | 2021-10-04 | 2.74 | 2.96 | — | 3.1 | 0.008 | 0.97 | 0.0 | 0.04 | 18.02 | 0.01 | 2.265 | 3.74 | 0.43 | 1.8 | 98.2 | 0.0 | 2.37 | 0.74 | 0.84 | 3.90 | 3.0 | 0.002 | 0.46 | 0.0 | 0.04 | 17.03 | 0.01 | 2.165 | 5.17 | 0.43 | 2.5 | 97.5 | 0.0 | 1.20 | 0.33 | 0.68 | 0.84 | 3.89 | 7419 | 852 | 9 | 0 | 24 | 57 | 0 | logfile |
✔ | 7S6D | 24875 | 2022-05-13 | 2021-09-13 | 3.1 | 3.82 | — | 3.4 | 0.005 | 0.71 | 0.0 | 0.04 | 13.49 | 0.00 | 2.083 | 3.46 | 0.00 | 3.4 | 96.6 | 0.0 | -0.10 | 0.86 | 0.81 | 3.05 | 3.4 | 0.002 | 0.46 | 0.0 | 0.04 | 14.12 | 0.00 | 2.020 | 5.69 | 0.00 | 3.4 | 96.6 | 0.0 | 0.42 | 1.12 | 0.86 | 0.83 | 2.96 | 46193 | 3112 | 8 | 0 | 1 | 0 | 22846 | logfile |
✔ | 7K0N | 22604 | 2022-05-14 | 2020-09-04 | 3.1 | 3.55 | — | 3.5 | 0.004 | 0.69 | 0.0 | 0.04 | 13.94 | 0.00 | 2.227 | 6.47 | 0.32 | 2.5 | 97.5 | 0.0 | 0.72 | 0.73 | 0.82 | 2.88 | 3.5 | 0.002 | 0.46 | 0.0 | 0.04 | 15.15 | 0.00 | 2.254 | 5.85 | 0.05 | 1.9 | 98.1 | 0.0 | 1.24 | 0.34 | 0.73 | 0.83 | 2.55 | 18470 | 2340 | 14 | 0 | 18 | 0 | 0 | logfile |
✔ | 7oNJ | 12996 | 2022-05-14 | 2021-05-25 | 2.3 | 2.52 | 2.24 | 2.5 | 0.011 | 0.97 | 0.0 | 0.06 | 18.45 | 0.00 | 2.155 | 8.48 | 0.47 | 0.8 | 99.2 | 0.0 | -0.25 | 0.76 | 0.88 | 5.16 | 2.5 | 0.003 | 0.46 | 0.0 | 0.04 | 18.21 | 0.00 | 2.171 | 7.75 | 0.47 | 0.8 | 99.2 | 0.0 | 2.22 | 1.55 | 0.76 | 0.89 | 4.35 | 16947 | 1834 | 21 | 0 | 63 | 266 | 0 | logfile |
✔ | 6MRT | 9212 | 2022-05-12 | 2018-10-15 | 2.8 | 2.93 | — | 2.9 | 0.008 | 0.90 | 0.0 | 0.05 | 10.67 | 0.01 | 2.260 | 1.61 | 0.82 | 1.1 | 98.9 | 0.0 | -1.27 | 0.70 | 0.84 | 3.77 | 2.9 | 0.003 | 0.46 | 0.0 | 0.03 | 15.43 | 0.00 | 2.226 | 3.14 | 1.29 | 0.5 | 99.5 | 0.0 | 5.71 | 3.08 | 0.73 | 0.87 | 2.07 | 26868 | 3420 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7E4T | 30987 | 2022-05-15 | 2021-02-15 | 3.0 | 3.26 | 3.08 | 3.3 | 0.007 | 0.79 | 0.0 | 0.04 | 13.89 | 0.00 | 2.278 | 6.59 | 1.01 | 1.1 | 98.9 | 0.0 | 0.77 | 0.50 | 0.68 | 3.26 | 3.3 | 0.002 | 0.47 | 0.0 | 0.03 | 16.68 | 0.00 | 2.181 | 5.83 | 3.34 | 1.2 | 98.8 | 0.0 | 2.36 | 1.24 | 0.71 | 0.85 | 3.19 | 22276 | 2656 | 8 | 0 | 24 | 0 | 0 | logfile |
✔ | 7PW4 | 13674 | 2022-05-14 | 2021-10-06 | 3.27 | 3.69 | — | 3.5 | 0.003 | 0.69 | 0.0 | 0.15 | 13.19 | 0.00 | 2.030 | 4.61 | 0.00 | 2.8 | 97.2 | 0.0 | 1.69 | 0.79 | 0.82 | 2.05 | 3.5 | 0.003 | 0.47 | 0.0 | 0.04 | 14.56 | 0.00 | 1.893 | 3.95 | 0.12 | 2.8 | 97.2 | 0.0 | 1.75 | 0.90 | 0.80 | 0.85 | 1.98 | 18965 | 2435 | 5 | 0 | 199 | 0 | 0 | logfile |
✔ | 7oRN | 13043 | 2022-05-13 | 2021-06-06 | 2.8 | 2.83 | — | 2.8 | 0.004 | 0.59 | 1.0 | 0.04 | 12.58 | 0.00 | 1.978 | 4.16 | 0.19 | 2.1 | 97.9 | 0.0 | 1.14 | 0.82 | 0.89 | 4.23 | 2.8 | 0.003 | 0.47 | 0.0 | 0.04 | 15.17 | 0.00 | 1.976 | 5.23 | 0.83 | 2.4 | 97.6 | 0.0 | 1.44 | 0.36 | 0.79 | 0.90 | 3.86 | 14811 | 1700 | 6 | 35 | 3 | 92 | 0 | logfile |
✔ | 6ZBL | 11157 | 2022-05-17 | 2020-06-08 | 3.6 | 4.39 | 3.70 | 4.0 | 0.014 | 1.20 | 0.0 | 0.07 | 14.69 | 0.01 | 2.400 | 1.54 | 0.00 | 0.7 | 99.3 | 0.0 | -0.56 | 0.87 | 0.79 | 1.33 | 4.0 | 0.003 | 0.47 | 0.0 | 0.03 | 15.53 | 0.00 | 2.015 | 2.99 | 0.00 | 1.0 | 99.0 | 0.0 | 4.19 | 1.34 | 0.88 | 0.82 | 0.89 | 39074 | 2326 | 4 | 0 | 0 | 0 | 19788 | logfile |
✔ | 6UCB | 20727 | 2022-05-16 | 2019-09-15 | 3.28 | 3.46 | — | 3.5 | 0.009 | 0.76 | 0.0 | 0.05 | 13.85 | 0.01 | 2.152 | 5.80 | 0.00 | 5.1 | 94.9 | 0.0 | -3.14 | 0.64 | 0.76 | 2.69 | 3.4 | 0.002 | 0.47 | 0.0 | 0.04 | 14.66 | 0.00 | 2.121 | 9.27 | 0.06 | 3.7 | 96.3 | 0.0 | 0.65 | 0.93 | 0.66 | 0.80 | 2.70 | 32324 | 2044 | 16 | 0 | 30 | 0 | 15694 | logfile |
✔ | 6C9i | 7436 | 2022-05-15 | 2018-01-26 | 3.09 | 3.21 | — | 3.2 | 0.029 | 1.48 | 0.0 | 0.12 | 9.22 | 0.01 | 2.417 | 1.04 | 0.00 | 0.3 | 99.6 | 0.1 | 2.36 | 0.79 | 0.85 | 4.97 | 3.2 | 0.004 | 0.47 | 0.0 | 0.04 | 15.04 | 0.00 | 2.229 | 5.61 | 0.12 | 0.0 | 100.0 | 0.0 | 3.66 | 2.42 | 0.73 | 0.90 | 3.62 | 23700 | 3087 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SFJ | 25079 | 2022-05-12 | 2021-10-04 | 2.74 | 3.33 | — | 3.4 | 0.007 | 0.94 | 0.0 | 0.04 | 18.41 | 0.01 | 2.308 | 4.07 | 1.28 | 2.5 | 97.5 | 0.0 | 2.20 | 0.62 | 0.78 | 3.51 | 3.4 | 0.002 | 0.47 | 0.0 | 0.04 | 17.60 | 0.00 | 2.280 | 5.02 | 1.28 | 3.1 | 96.9 | 0.0 | 2.40 | 0.47 | 0.58 | 0.77 | 3.08 | 7377 | 852 | 9 | 0 | 24 | 3 | 0 | logfile |
✔ | 7oRK | 13040 | 2022-05-14 | 2021-06-06 | 3.1 | 3.05 | — | 3.1 | 0.007 | 0.71 | 2.0 | 0.05 | 13.57 | 0.00 | 1.996 | 5.50 | 1.04 | 3.2 | 96.8 | 0.0 | 0.32 | 0.83 | 0.89 | 4.27 | 3.1 | 0.003 | 0.47 | 0.0 | 0.04 | 14.67 | 0.00 | 1.984 | 6.01 | 0.15 | 2.8 | 97.2 | 0.0 | 0.97 | 0.32 | 0.84 | 0.91 | 4.13 | 18699 | 2182 | 7 | 36 | 5 | 48 | 0 | logfile |
✔ | 6ZBC | 11150 | 2022-05-14 | 2020-06-08 | 3.1 | 3.91 | 3.31 | 3.6 | 0.007 | 1.02 | 0.0 | 0.05 | 13.80 | 0.00 | 2.449 | 1.08 | 0.00 | 1.3 | 98.7 | 0.0 | -0.79 | 0.85 | 0.80 | 2.24 | 3.6 | 0.002 | 0.47 | 0.0 | 0.03 | 15.19 | 0.00 | 2.079 | 3.69 | 0.09 | 1.1 | 98.9 | 0.0 | 4.36 | 0.84 | 0.85 | 0.81 | 1.55 | 19534 | 1160 | 4 | 0 | 0 | 0 | 9902 | logfile |
✔ | 7o6Q | 12740 | 2022-05-12 | 2021-04-12 | 1.88 | 2.21 | — | 1.9 | 0.010 | 0.71 | 0.0 | 0.05 | 12.80 | 0.01 | 2.115 | 4.83 | 1.25 | 3.2 | 96.8 | 0.0 | -1.61 | 0.88 | 0.85 | 7.59 | 1.9 | 0.002 | 0.47 | 0.0 | 0.04 | 14.46 | 0.00 | 2.188 | 5.16 | 1.63 | 0.8 | 99.2 | 0.0 | 3.35 | 0.36 | 0.90 | 0.90 | 6.06 | 7999 | 997 | 8 | 0 | 0 | 399 | 0 | logfile |
✔ | 7D4P | 30575 | 2022-05-15 | 2020-09-24 | 2.7 | 3.03 | 2.86 | 3.0 | 0.007 | 0.80 | 0.0 | 0.04 | 13.57 | 0.00 | 2.269 | 4.70 | 0.67 | 1.2 | 98.8 | 0.0 | 2.42 | 0.58 | 0.76 | 3.11 | 3.0 | 0.002 | 0.48 | 0.0 | 0.03 | 15.83 | 0.00 | 2.208 | 4.35 | 1.01 | 0.9 | 99.1 | 0.0 | 2.71 | 0.61 | 0.59 | 0.78 | 2.69 | 22472 | 2676 | 8 | 0 | 28 | 0 | 0 | logfile |
✔ | 7oo8 | 13007 | 2022-05-13 | 2021-05-26 | 3.7 | 2.99 | 3.39 | 3.0 | 0.003 | 0.40 | 0.0 | 0.04 | 9.89 | 0.00 | 2.286 | 6.45 | 0.00 | 1.9 | 98.1 | 0.0 | 2.79 | 0.65 | 0.79 | 2.44 | 3.0 | 0.003 | 0.48 | 0.0 | 0.04 | 14.96 | 0.00 | 2.291 | 10.06 | 0.27 | 1.2 | 98.8 | 0.0 | 2.49 | 0.46 | 0.65 | 0.79 | 2.25 | 13923 | 1827 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SMM | 25202 | 2022-05-14 | 2021-10-26 | 2.5 | 2.86 | — | 2.7 | 0.005 | 0.72 | 0.0 | 0.04 | 14.54 | 0.00 | 2.099 | 3.62 | 0.00 | 4.1 | 95.9 | 0.0 | 1.36 | 0.80 | 0.86 | 4.48 | 2.7 | 0.002 | 0.48 | 0.0 | 0.04 | 14.92 | 0.00 | 2.266 | 5.13 | 1.07 | 3.2 | 96.8 | 0.0 | 1.88 | 0.31 | 0.81 | 0.88 | 4.00 | 17256 | 2030 | 20 | 0 | 39 | 63 | 0 | logfile |
✔ | 7JMC | 22391 | 2022-05-17 | 2020-07-31 | 2.5 | 2.76 | 2.68 | 2.7 | 0.010 | 1.29 | 0.0 | 0.06 | 13.90 | 0.01 | 2.249 | 2.77 | 0.57 | 1.6 | 98.4 | 0.0 | 3.40 | 0.62 | 0.82 | 4.76 | 2.7 | 0.003 | 0.48 | 0.0 | 0.04 | 13.42 | 0.00 | 2.126 | 5.15 | 1.71 | 1.1 | 98.9 | 0.0 | 3.44 | 0.68 | 0.65 | 0.86 | 4.05 | 39828 | 2304 | 36 | 0 | 144 | 168 | 18576 | logfile |