Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6o0X	0583	2021-09-03	2019-02-17	3.28	3.97	—	3.6	0.005	0.74	0.0	0.04	16.67	0.01	2.317	2.65	0.14	6.2	93.8	0.0	-4.06	0.85	0.88	2.75	3.6	0.002	0.48	0.0	0.03	17.09	0.00	2.236	5.41	0.14	3.5	96.5	0.0	0.19	1.24	0.84	0.87	2.51	11257	1112	5	150	0	0	0	logfile
✔	6WCC	21606	2021-09-03	2020-03-30	3.24	3.27	—	3.3	0.003	0.51	0.0	0.03	15.73	0.00	2.025	4.39	2.26	0.8	99.2	0.0	1.46	0.53	0.76	1.58	3.3	0.002	0.48	0.0	0.03	15.76	0.00	2.209	5.34	0.16	2.3	97.7	0.0	4.55	1.70	0.54	0.79	1.80	11629	734	6	0	5	12	5908	logfile
✔	7K0M	22602	2021-09-04	2020-09-04	2.9	3.38	—	3.3	0.006	0.74	0.0	0.04	13.61	0.00	2.218	4.67	0.00	2.3	97.7	0.0	1.05	0.62	0.79	3.49	3.3	0.002	0.48	0.0	0.04	15.21	0.00	2.199	5.29	1.29	1.9	98.1	0.0	1.42	0.40	0.64	0.81	2.91	18578	2342	14	0	16	0	0	logfile
✔	6ZBC	11150	2021-09-04	2020-06-08	3.1	3.91	3.31	3.6	0.007	1.02	0.0	0.05	13.80	0.00	2.449	0.97	0.00	1.3	98.7	0.0	-0.79	0.85	0.80	2.24	3.6	0.002	0.48	0.0	0.03	15.15	0.00	2.042	4.10	0.00	1.1	98.9	0.0	4.73	0.89	0.86	0.82	1.38	19534	1160	4	0	0	0	9902	logfile
✔	6ZBJ	11156	2021-09-06	2020-06-08	3.3	4.20	3.47	3.8	0.011	1.04	0.0	0.06	14.14	0.01	2.351	1.38	0.00	0.7	99.3	0.0	-1.34	0.87	0.81	1.60	3.8	0.003	0.49	0.0	0.03	15.10	0.00	2.086	3.60	0.14	0.8	99.2	0.0	4.12	1.33	0.88	0.83	1.19	39212	2334	4	0	0	0	19864	logfile
✔	6NT9	0506	2021-09-03	2019-01-28	3.3	3.42	—	3.3	0.010	0.89	0.0	0.06	9.66	0.01	2.250	1.52	0.18	3.5	96.5	0.0	-2.03	0.81	0.86	3.98	3.3	0.003	0.49	0.0	0.04	14.28	0.00	2.229	3.89	0.18	1.8	98.2	0.0	2.78	0.60	0.83	0.87	3.11	9906	1228	4	0	0	0	0	logfile
✔	7JM9	22390	2021-09-06	2020-07-31	2.5	2.71	2.65	2.7	0.007	0.82	0.0	0.07	14.06	0.00	2.291	3.08	0.56	1.1	98.9	0.0	0.10	0.62	0.82	5.25	2.6	0.002	0.49	0.0	0.04	14.15	0.00	2.095	9.49	1.51	1.1	98.9	0.0	3.91	0.74	0.63	0.84	4.53	41136	2328	36	0	168	156	18876	logfile
✔	7KoD	22972	2021-09-04	2020-11-08	1.655	2.30	—	1.9	0.001	0.35	0.0	0.03	8.49	0.00	2.288	0.78	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	1.9	0.004	0.49	0.0	0.03	13.79	0.00	1.882	1.73	0.11	0.9	99.1	0.0	5.23	0.59	0.87	0.93	8.04	68186	4128	48	0	0	1727	32643	logfile
✔	7o6E	12738	2021-09-05	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.49	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.004	0.49	0.0	0.03	18.22	0.01	2.202	3.30	0.69	1.0	99.0	0.0	4.35	0.28	0.88	0.89	5.30	35304	4248	48	0	0	1392	0	logfile
✔	6U95	20693	2021-09-20	2019-09-06	2.56	4.18	2.62	2.5	0.008	0.82	60.0	0.05	13.57	0.00	1.933	14.33	0.22	1.9	97.9	0.2	-2.81	0.70	0.85	5.00	2.5	0.002	0.49	0.0	0.04	14.21	0.00	2.195	4.55	0.93	1.4	98.6	0.0	-0.16	3.66	0.80	0.94	4.97	247500	31140	60	0	0	0	0	logfile
✔	7NCA	12264	2021-09-03	2021-01-28	3.47	3.58	3.04	3.6	0.012	2.04	0.0	0.08	10.64	0.01	2.645	0.00	0.19	5.5	94.5	0.0	-2.04	0.73	0.85	4.45	3.7	0.002	0.49	0.0	0.05	13.31	0.00	2.284	0.58	0.00	2.1	97.9	0.0	-3.07	0.79	0.71	0.86	3.36	10428	732	12	0	0	0	5376	logfile
✔	6X0V	21985	2021-09-02	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	13.37	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.49	0.0	0.04	12.41	0.00	2.231	18.72	0.00	4.0	96.0	0.0	1.90	1.19	0.40	0.74	—	1384	211	4	0	0	0	62	logfile
✔	7LHV	23351	2021-09-02	2021-01-26	2.75	3.33	2.83	3.3	0.007	0.74	0.0	0.04	14.07	0.00	2.299	4.60	0.00	3.5	96.5	0.0	0.97	0.55	0.73	2.12	3.3	0.002	0.49	0.0	0.04	14.17	0.00	2.181	5.41	0.93	3.3	96.7	0.0	1.26	0.59	0.55	0.77	2.86	9094	1150	6	0	8	2	0	logfile
✔	7K5C	22680	2021-09-06	2020-09-16	2.7	2.91	—	2.9	0.004	0.53	0.0	0.04	14.17	0.00	2.201	4.77	0.00	3.2	96.8	0.0	1.14	0.71	0.85	3.23	2.9	0.003	0.49	2.0	0.04	17.30	0.00	2.091	4.78	1.15	2.9	97.1	0.0	2.44	0.43	0.69	0.85	2.68	41547	5268	24	0	0	219	0	logfile
✔	7P54	13194	2021-09-02	2021-07-14	3.3	3.29	3.21	3.5	0.003	0.51	0.0	0.04	13.48	0.00	2.206	6.90	0.00	1.7	98.3	0.0	4.08	0.53	0.76	1.07	3.5	0.003	0.49	0.0	0.04	16.10	0.00	2.222	6.98	0.45	2.7	97.3	0.0	4.52	1.89	0.56	0.78	1.01	6248	794	8	0	12	0	0	logfile
✔	6ZBE	11152	2021-09-04	2020-06-08	3.3	4.04	3.36	3.7	0.010	1.16	0.0	0.08	13.39	0.01	2.470	1.08	0.00	0.8	99.2	0.0	0.61	0.84	0.76	1.69	3.7	0.002	0.49	0.0	0.03	15.37	0.00	2.053	5.02	0.18	1.1	98.9	0.0	4.31	1.88	0.86	0.80	1.08	19534	1160	4	0	0	0	9902	logfile
✔	7KJR	22898	2021-09-02	2020-10-26	2.08	2.52	2.15	2.4	0.007	0.89	0.0	0.05	16.37	0.00	2.254	7.60	0.25	1.8	98.2	0.0	1.13	0.68	0.87	5.29	2.4	0.002	0.49	0.0	0.04	15.85	0.00	2.118	9.22	0.99	2.3	97.7	0.0	1.42	0.42	0.67	0.86	4.21	3840	448	8	0	2	122	0	logfile
✔	6WSG	21892	2021-09-07	2020-04-30	3.16	3.73	—	3.5	0.011	0.83	0.0	0.05	13.35	0.01	1.970	3.31	0.04	0.7	99.3	0.0	-1.08	0.76	0.73	3.52	3.5	0.003	0.49	0.0	0.04	14.88	0.00	1.866	6.19	0.04	2.9	97.1	0.0	1.28	0.66	0.77	0.81	2.88	52087	3334	26	0	9	7	26155	logfile
✔	6ZBG	11154	2021-09-04	2020-06-08	3.2	3.97	3.37	3.6	0.010	1.15	0.0	0.07	13.62	0.01	2.468	1.13	0.00	1.1	98.9	0.0	0.72	0.84	0.78	2.20	3.6	0.002	0.49	0.0	0.03	15.31	0.00	2.007	4.86	0.18	1.2	98.8	0.0	4.21	1.89	0.86	0.81	1.46	19534	1160	4	0	0	0	9902	logfile
✔	6ZBH	11155	2021-09-04	2020-06-08	3.6	4.44	3.80	3.9	0.010	1.17	0.0	0.08	13.65	0.01	2.465	0.92	0.00	1.0	99.0	0.0	0.82	0.86	0.76	1.40	3.9	0.002	0.49	0.0	0.03	15.16	0.00	2.070	6.40	0.18	1.5	98.5	0.0	4.39	1.53	0.88	0.81	1.31	19523	1159	4	0	0	0	9896	logfile

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