Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NJU	12423	2022-07-04	2021-02-17	3.74	3.93	—	3.8	0.003	0.47	0.0	0.04	14.41	0.00	2.064	6.27	0.00	4.0	96.0	0.0	2.44	0.63	0.83	1.57	3.8	0.003	0.49	0.0	0.04	15.41	0.00	2.105	7.00	0.00	2.0	98.0	0.0	4.84	0.33	0.64	0.83	1.26	16438	1119	12	0	0	0	8341	logfile
✔	6XKY	22229	2022-07-07	2020-06-27	3.2	3.13	3.17	3.2	0.006	0.55	0.0	0.03	10.04	0.00	1.588	4.66	0.48	1.5	98.5	0.0	2.67	0.52	0.87	2.05	3.2	0.004	0.49	0.0	0.03	14.28	0.00	2.145	4.55	0.33	1.9	98.1	0.0	3.67	0.50	0.53	0.89	1.91	38760	5420	20	0	0	0	0	logfile
✔	6ZBG	11154	2022-07-04	2020-06-08	3.2	3.97	3.37	3.6	0.010	1.15	0.0	0.07	13.62	0.01	2.468	1.13	0.00	1.1	98.9	0.0	0.72	0.84	0.78	2.20	3.6	0.002	0.49	0.0	0.03	15.27	0.00	2.144	4.35	0.00	0.8	99.2	0.0	4.36	1.86	0.85	0.79	1.37	19534	1160	4	0	0	0	9902	logfile
✔	7P54	13194	2022-07-03	2021-07-14	3.3	3.29	3.21	3.5	0.003	0.51	0.0	0.04	13.48	0.00	2.206	7.14	0.00	1.7	98.3	0.0	4.08	0.53	0.76	1.07	3.5	0.003	0.49	0.0	0.05	15.89	0.00	2.239	6.98	0.15	2.0	98.0	0.0	4.49	1.36	0.55	0.78	1.13	6248	794	8	0	12	0	0	logfile
✔	6U5S	20654	2022-07-06	2019-08-28	3.07	3.44	—	3.4	0.003	0.41	0.0	0.07	12.04	0.00	2.078	6.02	0.00	3.3	96.7	0.0	-3.21	0.81	0.80	4.41	3.3	0.005	0.49	0.0	0.04	13.55	0.00	2.091	7.11	0.00	4.2	95.8	0.0	-0.08	1.23	0.83	0.83	4.36	21461	1504	8	0	20	0	9755	logfile
✔	6ZBJ	11156	2022-07-07	2020-06-08	3.3	4.20	3.47	3.8	0.011	1.04	0.0	0.06	14.14	0.01	2.351	1.38	0.00	0.7	99.3	0.0	-1.34	0.87	0.81	1.60	3.7	0.002	0.49	0.0	0.03	15.22	0.00	2.046	3.49	0.00	0.9	99.1	0.0	3.86	1.30	0.87	0.82	1.19	39212	2334	4	0	0	0	19864	logfile
✔	7S4X	24838	2022-07-04	2021-09-09	2.76	3.30	—	3.1	0.006	0.60	0.0	0.04	17.12	0.00	1.878	7.16	0.00	4.0	96.0	0.0	0.02	0.87	0.89	4.31	3.1	0.002	0.49	0.0	0.04	17.49	0.00	1.987	7.88	0.66	3.0	97.0	0.0	1.08	0.32	0.83	0.88	3.46	14491	1354	10	161	5	7	0	logfile
✔	7T11	25587	2022-07-03	2021-11-30	2.7	2.94	—	3.0	0.004	0.61	2.0	0.04	10.76	0.00	2.107	3.59	0.27	2.4	97.6	0.0	0.96	0.60	0.74	3.90	3.0	0.002	0.49	2.0	0.04	13.65	0.00	2.230	3.78	0.53	2.0	98.0	0.0	1.51	0.42	0.62	0.78	3.02	8151	1132	6	0	2	0	0	logfile
✔	6MHQ	9116	2022-07-06	2018-09-18	3.4	3.50	—	3.5	0.018	0.80	0.0	0.08	12.18	0.00	2.210	6.75	3.14	5.8	94.2	0.0	-1.67	0.73	0.83	2.60	3.5	0.002	0.49	0.0	0.04	15.39	0.00	2.088	11.34	0.84	5.0	95.0	0.0	2.21	1.06	0.73	0.85	2.42	32640	2124	12	0	0	0	15264	logfile
✔	7K0L	22601	2022-07-03	2020-09-04	3.4	3.83	—	3.7	0.004	0.60	0.0	0.04	12.59	0.00	2.141	4.54	0.00	1.9	98.1	0.0	1.09	0.74	0.87	3.05	3.7	0.003	0.49	0.0	0.04	13.88	0.00	2.204	5.39	0.25	2.1	97.9	0.0	0.97	1.04	0.74	0.88	2.79	7619	964	4	0	2	0	0	logfile
✔	7V21	31633	2022-07-03	2021-08-07	3.08	3.18	—	3.1	0.004	0.73	0.0	0.05	13.48	0.00	2.266	4.96	0.31	2.6	97.3	0.1	0.95	0.72	0.87	3.52	3.1	0.002	0.49	0.0	0.04	14.88	0.00	2.158	5.72	0.08	2.4	97.6	0.0	1.49	0.44	0.73	0.88	3.00	11903	1505	4	0	0	0	0	logfile
✔	7NKD	12438	2022-07-03	2021-02-17	3.12	3.57	—	3.2	0.003	0.45	0.0	0.04	14.50	0.00	2.134	6.59	0.00	1.7	98.3	0.0	2.45	0.85	0.81	2.57	3.2	0.004	0.49	0.0	0.04	15.45	0.00	2.119	7.12	0.19	1.5	98.5	0.0	2.87	0.91	0.85	0.84	2.51	9555	643	8	0	0	0	4768	logfile
✔	7Z19	14445	2022-07-06	2022-02-24	2.57	3.23	2.58	3.0	0.005	0.62	0.0	0.04	13.36	0.00	2.000	6.87	0.28	2.6	97.4	0.0	1.13	0.78	0.88	4.29	3.0	0.003	0.49	0.0	0.04	14.88	0.00	2.033	6.78	0.33	2.2	97.8	0.0	1.61	0.31	0.77	0.88	4.36	34105	2174	21	0	6	477	16717	logfile
✔	7K0Q	22608	2022-07-03	2020-09-04	3.3	3.61	—	3.5	0.006	0.70	0.0	0.05	12.64	0.00	2.116	5.47	0.00	3.3	96.7	0.0	0.45	0.70	0.85	3.35	3.5	0.002	0.49	0.0	0.04	14.23	0.00	2.188	4.90	0.21	2.5	97.5	0.0	1.18	1.46	0.72	0.87	2.83	8778	1107	5	0	2	0	0	logfile
✔	7KoD	22972	2022-07-04	2020-11-08	1.655	2.30	—	1.9	0.001	0.33	0.0	0.03	8.49	0.00	2.288	0.80	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	2.0	0.005	0.49	0.0	0.04	13.81	0.00	1.858	2.53	0.27	0.6	99.4	0.0	5.26	0.58	0.88	0.94	8.02	68186	4128	48	0	0	1727	32643	logfile
✔	7SiP	25147	2022-07-03	2021-10-14	3.0	3.27	—	3.3	0.011	1.17	0.0	0.04	16.74	0.01	2.313	3.17	0.00	0.9	99.1	0.0	0.93	0.63	0.81	2.85	3.3	0.003	0.49	0.0	0.04	15.47	0.00	2.222	3.43	1.74	0.5	99.5	0.0	1.36	0.99	0.61	0.83	2.67	7560	892	12	0	36	20	0	logfile
✔	7UB0	26433	2022-07-05	2022-03-14	3.31	3.57	3.27	3.4	0.003	0.47	0.0	0.04	13.05	0.00	2.205	5.06	0.04	2.0	98.0	0.0	-0.12	0.85	0.86	3.45	3.4	0.004	0.49	0.0	0.04	13.94	0.00	2.159	5.24	0.15	2.5	97.5	0.0	0.29	0.23	0.86	0.88	3.33	24993	3109	16	0	50	0	0	logfile
✔	7RJT	24490	2022-07-06	2021-07-21	2.93	3.41	—	3.3	0.005	0.59	0.0	0.04	14.12	0.00	2.251	5.04	0.00	2.6	97.4	0.0	0.61	0.75	0.80	2.98	3.3	0.003	0.49	0.0	0.04	15.16	0.00	2.234	5.32	0.92	2.5	97.5	0.0	0.86	0.34	0.77	0.82	2.76	28972	3608	12	0	28	24	0	logfile
✔	7MQE	23944	2022-07-05	2021-05-05	3.69	3.22	3.67	3.5	0.008	0.84	0.0	0.06	13.45	0.00	2.308	1.87	0.77	1.7	98.3	0.0	0.67	0.75	0.81	3.89	3.5	0.002	0.50	0.0	0.04	14.02	0.00	2.257	3.49	0.00	1.4	98.6	0.0	1.35	0.42	0.79	0.83	3.46	12163	1629	16	16	0	0	0	logfile
✔	7RB2	24392	2022-07-06	2021-07-05	3.27	3.28	—	3.2	0.008	0.74	0.0	0.05	14.45	0.00	2.075	7.81	0.33	5.1	94.9	0.0	-1.06	0.74	0.85	4.44	3.2	0.002	0.50	0.0	0.04	15.45	0.00	2.248	5.48	0.11	2.2	97.8	0.0	0.37	3.66	0.77	0.85	3.65	16386	2082	6	0	0	0	0	logfile

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