Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6SGR	10182	2021-12-01	2019-08-05	3.17	3.28	3.08	3.2	0.004	0.54	0.0	0.04	13.56	0.00	2.201	5.13	0.00	3.2	96.8	0.0	-3.06	0.69	0.83	3.52	3.2	0.003	0.54	0.0	0.04	15.48	0.00	1.986	5.36	0.17	2.8	97.2	0.0	1.14	0.77	0.71	0.86	2.87	54142	3528	8	0	0	0	27330	logfile
✔	7EW3	31346	2021-12-01	2021-05-24	3.1	3.34	—	3.4	0.004	0.49	0.0	0.04	14.15	0.00	2.274	4.63	0.00	1.4	98.6	0.0	1.36	0.66	0.76	2.23	3.4	0.003	0.55	0.0	0.04	15.66	0.00	2.098	4.68	0.20	1.9	98.1	0.0	1.26	1.36	0.64	0.77	2.46	9072	1149	6	0	5	0	0	logfile
✔	7N73	24218	2021-12-01	2021-06-09	2.9	3.46	2.99	3.3	0.006	0.76	0.0	0.06	13.02	0.00	1.850	7.76	0.00	2.6	97.4	0.0	1.31	0.71	0.85	2.86	3.3	0.002	0.55	0.0	0.04	14.24	0.00	1.996	5.87	0.60	2.3	97.7	0.0	1.78	0.34	0.69	0.85	2.41	7866	1036	1	0	6	3	0	logfile
✔	7RMH	24570	2021-12-01	2021-07-27	3.1	4.02	3.03	3.9	0.004	0.75	0.0	0.05	13.42	0.01	2.290	2.56	0.00	4.1	95.9	0.0	-1.32	0.74	0.80	2.69	3.9	0.003	0.55	0.0	0.04	15.08	0.00	2.218	4.64	0.00	3.2	96.7	0.1	0.64	0.54	0.62	0.57	2.32	7434	986	6	0	1	0	0	logfile
✔	6LLE	0912	2021-12-01	2019-12-23	2.9	3.06	2.85	3.0	0.006	0.61	0.0	0.04	12.45	0.00	2.050	6.54	0.00	2.7	97.3	0.0	-1.87	0.67	0.82	3.28	3.0	0.002	0.55	0.0	0.04	16.60	0.00	2.182	7.73	2.29	2.2	97.8	0.0	0.70	0.46	0.71	0.84	2.80	7916	1020	1	0	4	0	0	logfile
✔	7PMW	13542	2021-12-01	2021-09-03	4.1	4.24	4.05	4.1	0.002	0.47	1.0	0.04	9.25	0.00	2.047	8.47	0.91	2.8	97.2	0.0	0.56	0.58	0.75	—	4.1	0.003	0.55	0.0	0.04	11.56	0.00	2.047	10.15	0.00	3.2	96.8	0.0	0.68	1.20	0.58	0.76	—	10153	643	2	0	0	0	5123	logfile
✔	7PiU	13453	2021-12-01	2021-08-23	2.58	2.73	—	2.7	0.013	1.71	2.0	0.09	14.44	0.00	2.250	3.33	0.97	4.1	95.8	0.1	-2.07	0.70	0.88	4.78	2.7	0.003	0.55	2.0	0.04	16.30	0.00	2.151	5.74	1.46	2.2	97.8	0.0	2.04	1.92	0.70	0.89	4.47	7788	974	12	0	3	88	0	logfile
✔	6SKi	10225	2021-12-01	2019-08-15	2.6	2.97	2.57	2.9	0.004	0.72	0.0	0.04	16.20	0.00	2.210	8.64	1.29	1.6	98.4	0.0	-0.80	0.63	0.83	4.83	2.9	0.003	0.55	0.0	0.04	16.67	0.00	2.267	7.50	1.94	3.1	96.9	0.0	0.90	0.51	0.66	0.86	4.48	4434	569	2	0	0	0	0	logfile
✔	7P5C	13198	2021-12-01	2021-07-14	3.2	3.07	3.09	3.3	0.004	0.58	0.0	0.04	14.51	0.00	2.220	6.92	0.00	2.1	97.9	0.0	2.41	0.57	0.82	2.09	3.3	0.003	0.55	0.0	0.04	15.96	0.00	2.237	6.27	0.46	1.8	98.2	0.0	4.20	0.32	0.53	0.80	1.29	6222	784	6	0	8	0	0	logfile
✔	6XMT	22263	2021-12-01	2020-06-30	3.3	3.96	3.42	3.7	0.004	0.61	0.0	0.04	12.44	0.00	1.814	7.24	0.00	4.5	95.5	0.0	-2.38	0.72	0.82	2.61	3.8	0.003	0.55	0.0	0.04	14.15	0.00	1.887	6.03	0.23	4.3	95.7	0.0	0.38	0.40	0.72	0.86	1.91	8324	1092	1	0	2	0	0	logfile
✔	6VRH	21368	2021-12-01	2020-02-07	3.3	3.68	3.56	3.6	0.002	0.53	0.0	0.04	12.92	0.00	2.212	9.91	0.00	5.1	94.9	0.0	-3.01	0.45	0.70	2.12	3.6	0.002	0.55	0.0	0.04	14.99	0.00	2.136	9.42	0.15	5.7	94.3	0.0	-0.65	0.58	0.51	0.73	1.75	6142	764	4	0	5	0	0	logfile
✔	6oR5	9032	2021-12-02	2019-04-29	4.0	4.23	—	3.9	0.006	0.93	0.0	0.05	11.50	0.00	2.245	4.84	0.00	17.3	82.4	0.3	-5.53	0.76	0.79	—	3.9	0.002	0.55	0.0	0.04	8.14	0.00	2.245	2.56	0.00	10.4	89.6	0.0	0.12	1.87	0.78	0.79	—	10364	2058	1	0	5	0	0	logfile
✔	6XYQ	10652	2021-12-01	2020-01-30	3.09	3.30	2.79	3.3	0.007	0.71	0.0	0.05	12.97	0.00	2.130	9.08	0.00	3.5	96.5	0.0	-4.52	0.46	0.84	3.97	3.3	0.004	0.55	0.0	0.05	15.09	0.00	2.232	8.09	0.82	2.3	97.7	0.0	-3.28	0.44	0.47	0.85	4.77	4955	725	10	0	0	0	0	logfile
✔	6D9H	7835	2021-12-01	2018-04-29	3.6	3.82	—	3.8	0.006	0.93	0.0	0.06	9.32	0.01	2.219	4.04	0.00	3.4	96.6	0.0	-1.52	0.65	0.78	2.88	3.9	0.002	0.55	0.0	0.04	13.81	0.00	2.117	9.78	0.13	3.3	96.7	0.0	0.88	1.24	0.67	0.79	2.16	7023	892	4	0	1	0	0	logfile
✔	7M05	23609	2021-12-01	2021-03-10	2.39	2.66	2.49	2.6	0.013	1.00	0.0	0.06	14.78	0.01	2.064	3.66	0.50	6.9	92.3	0.8	-3.01	0.75	0.81	4.52	2.6	0.002	0.55	0.0	0.05	16.21	0.00	2.061	2.78	1.00	2.0	97.9	0.1	0.63	1.28	0.79	0.84	3.83	57152	3636	12	0	4	0	28188	logfile
✔	7A7C	11677	2021-12-01	2020-08-27	3.16	3.66	3.23	3.5	0.003	0.54	0.0	0.04	13.51	0.00	2.199	6.63	0.00	4.5	95.5	0.0	-0.97	0.82	0.87	3.57	3.5	0.005	0.55	0.0	0.04	14.63	0.00	2.108	6.73	0.11	5.1	94.9	0.0	-0.29	0.24	0.83	0.89	3.27	9387	1226	2	0	1	0	0	logfile
✔	7CR1	30444	2021-12-01	2020-08-12	3.4	3.42	—	3.5	0.012	0.88	0.0	0.04	14.90	0.00	2.185	26.22	0.00	4.1	95.9	0.0	-2.00	0.59	0.82	3.14	3.5	0.003	0.55	0.0	0.04	16.66	0.00	2.203	7.85	0.60	2.4	97.6	0.0	2.98	1.21	0.59	0.81	2.00	8220	1000	8	0	4	0	0	logfile
✔	6X16	21990	2021-12-01	2020-05-18	3.39	3.34	—	3.4	0.006	0.99	0.0	0.05	14.76	0.01	2.322	3.97	0.31	4.8	95.2	0.0	-3.86	0.40	0.73	1.79	3.4	0.002	0.56	0.0	0.04	15.07	0.00	2.191	8.24	0.00	3.5	96.5	0.0	0.91	0.32	0.46	0.78	1.38	9438	1248	6	0	6	0	0	logfile
✔	7E2Z	30973	2021-12-01	2021-02-07	3.1	3.34	—	3.4	0.008	1.20	0.0	0.22	14.22	0.01	2.160	5.29	0.00	1.6	98.4	0.0	2.35	0.57	0.74	1.94	3.4	0.002	0.56	0.0	0.04	15.47	0.00	2.227	6.78	0.00	1.6	98.4	0.0	1.62	0.46	0.61	0.79	2.18	6997	870	4	0	5	0	0	logfile
✔	6RD6	4807	2021-12-01	2019-04-12	2.75	2.89	2.74	2.8	0.006	0.82	0.0	0.05	13.67	0.01	2.306	4.49	0.38	2.5	97.5	0.0	-3.09	0.62	0.85	3.36	2.8	0.004	0.56	0.0	0.04	15.57	0.00	2.184	6.16	1.14	2.5	97.5	0.0	2.19	1.13	0.61	0.86	3.18	7758	1035	10	0	0	32	0	logfile

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