Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LFT	23306	2022-05-14	2021-01-18	2.6	2.42	—	2.6	0.009	1.10	0.0	0.06	14.80	0.00	1.832	8.91	0.25	2.5	97.5	0.0	-0.82	0.69	0.87	4.43	2.5	0.003	0.49	0.0	0.04	16.13	0.00	2.239	8.97	1.79	2.0	98.0	0.0	1.63	0.55	0.72	0.88	4.28	15479	1800	12	0	35	4	0	logfile
✔	7RH9	24458	2022-05-13	2021-07-16	2.61	2.09	—	2.5	0.003	0.57	0.0	0.04	13.27	0.01	2.214	5.89	0.00	1.3	98.7	0.0	1.30	0.64	0.84	4.07	2.5	0.003	0.49	0.0	0.04	15.66	0.00	2.167	8.77	0.87	1.6	98.4	0.0	2.64	0.91	0.64	0.86	3.93	14680	1792	4	0	0	0	0	logfile
✔	6XKY	22229	2022-05-17	2020-06-27	3.2	3.13	3.17	3.2	0.006	0.55	0.0	0.03	10.04	0.00	1.588	4.66	0.48	1.5	98.5	0.0	2.67	0.52	0.87	2.05	3.2	0.004	0.49	0.0	0.03	14.28	0.00	2.145	4.55	0.33	1.9	98.1	0.0	3.67	0.50	0.53	0.89	1.91	38760	5420	20	0	0	0	0	logfile
✔	6ZBJ	11156	2022-05-17	2020-06-08	3.3	4.20	3.47	3.8	0.011	1.04	0.0	0.06	14.14	0.01	2.351	1.38	0.00	0.7	99.3	0.0	-1.34	0.87	0.81	1.60	3.7	0.002	0.49	0.0	0.03	15.22	0.00	2.046	3.49	0.00	0.9	99.1	0.0	3.86	1.30	0.87	0.82	1.19	39212	2334	4	0	0	0	19864	logfile
✔	7NJU	12423	2022-05-14	2021-02-17	3.74	3.93	—	3.8	0.003	0.47	0.0	0.04	14.41	0.00	2.064	6.27	0.00	4.0	96.0	0.0	2.44	0.63	0.83	1.57	3.8	0.003	0.49	0.0	0.04	15.41	0.00	2.105	7.00	0.00	2.0	98.0	0.0	4.84	0.33	0.64	0.83	1.26	16438	1119	12	0	0	0	8341	logfile
✔	7NYW	12656	2022-05-18	2021-03-23	3.1	3.76	3.13	3.2	0.003	0.50	0.0	0.04	18.04	0.00	1.891	6.13	0.00	3.7	96.3	0.0	1.43	0.83	0.79	1.86	3.2	0.003	0.49	0.0	0.04	18.54	0.00	1.855	6.58	0.08	3.6	96.4	0.0	2.00	0.47	0.84	0.83	1.82	48568	2795	18	104	6	0	23780	logfile
✔	7UB0	26433	2022-05-15	2022-03-14	3.31	3.57	3.27	3.4	0.003	0.47	0.0	0.04	13.05	0.00	2.205	5.06	0.04	2.0	98.0	0.0	-0.12	0.85	0.86	3.45	3.4	0.004	0.49	0.0	0.04	13.94	0.00	2.159	5.24	0.15	2.5	97.5	0.0	0.29	0.23	0.86	0.88	3.33	24993	3109	16	0	50	0	0	logfile
✔	7SiP	25147	2022-05-12	2021-10-14	3.0	3.27	—	3.3	0.011	1.17	0.0	0.04	16.74	0.01	2.313	3.17	0.00	0.9	99.1	0.0	0.93	0.63	0.81	2.85	3.3	0.003	0.49	0.0	0.04	15.47	0.00	2.222	3.43	1.74	0.5	99.5	0.0	1.36	0.99	0.61	0.83	2.67	7560	892	12	0	36	20	0	logfile
✔	7TiK	25912	2022-05-12	2022-01-13	2.4	2.38	—	2.0	0.007	0.49	0.0	0.04	16.31	0.00	2.218	8.52	0.00	4.6	95.4	0.0	1.31	0.77	0.80	1.31	2.0	0.004	0.49	0.0	0.04	16.44	0.00	2.228	10.65	1.01	0.3	99.7	0.0	5.49	0.93	0.79	0.80	1.38	2565	339	6	0	0	0	0	logfile
✔	7LiA	23365	2022-05-12	2021-01-26	3.3	3.41	—	3.5	0.002	0.75	0.0	0.07	13.30	0.00	2.266	8.20	1.71	2.5	97.5	0.0	-2.33	0.63	0.77	2.53	3.4	0.002	0.49	0.0	0.04	14.63	0.00	2.125	9.46	0.16	4.5	95.5	0.0	0.18	0.49	0.69	0.81	3.12	6279	767	5	0	27	0	0	logfile
✔	7P54	13194	2022-05-12	2021-07-14	3.3	3.29	3.21	3.5	0.003	0.51	0.0	0.04	13.48	0.00	2.206	7.14	0.00	1.7	98.3	0.0	4.08	0.53	0.76	1.07	3.5	0.003	0.49	0.0	0.05	15.89	0.00	2.239	6.98	0.15	2.0	98.0	0.0	4.49	1.36	0.55	0.78	1.13	6248	794	8	0	12	0	0	logfile
✔	7V21	31633	2022-05-13	2021-08-07	3.08	3.18	—	3.1	0.004	0.73	0.0	0.05	13.48	0.00	2.266	4.96	0.31	2.6	97.3	0.1	0.95	0.72	0.87	3.52	3.1	0.002	0.49	0.0	0.04	14.88	0.00	2.158	5.72	0.08	2.4	97.6	0.0	1.49	0.44	0.73	0.88	3.00	11903	1505	4	0	0	0	0	logfile
✔	7KoD	22972	2022-05-14	2020-11-08	1.655	2.30	—	1.9	0.001	0.33	0.0	0.03	8.49	0.00	2.288	0.80	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	2.0	0.005	0.49	0.0	0.04	13.81	0.00	1.858	2.53	0.27	0.6	99.4	0.0	5.26	0.58	0.88	0.94	8.02	68186	4128	48	0	0	1727	32643	logfile
✔	7MSX	23971	2022-05-12	2021-05-12	3.15	3.24	3.04	3.2	0.008	0.62	0.0	0.05	10.30	0.00	2.385	0.95	0.00	1.9	98.1	0.0	0.06	0.77	0.85	3.76	3.2	0.003	0.49	0.0	0.04	15.13	0.00	2.210	5.43	0.49	2.1	97.9	0.0	1.21	1.12	0.79	0.87	3.16	3706	473	1	0	3	0	0	logfile
✔	7S4X	24838	2022-05-13	2021-09-09	2.76	3.30	—	3.1	0.006	0.60	0.0	0.04	17.12	0.00	1.878	7.16	0.00	4.0	96.0	0.0	0.02	0.87	0.89	4.31	3.1	0.002	0.49	0.0	0.04	17.49	0.00	1.987	7.88	0.66	3.0	97.0	0.0	1.08	0.32	0.83	0.88	3.46	14491	1354	10	161	5	7	0	logfile
✔	7WHN	32505	2022-05-13	2021-12-31	3.3	2.99	—	3.2	0.009	0.80	0.0	0.05	13.81	0.01	2.147	7.75	0.10	4.5	95.5	0.0	-1.29	0.41	0.83	2.92	3.2	0.002	0.49	0.0	0.04	15.01	0.00	2.268	5.58	0.19	2.4	97.6	0.0	1.01	0.40	0.37	0.80	2.24	9284	1170	1	0	0	0	0	logfile
✔	7NG9	12310	2022-05-14	2021-02-08	3.3	3.48	3.33	3.5	0.007	0.48	0.0	0.04	14.72	0.00	2.250	4.23	0.85	3.6	96.4	0.0	-0.87	0.62	0.80	4.09	3.5	0.003	0.49	0.0	0.03	15.82	0.00	2.122	6.92	0.09	2.5	97.5	0.0	2.16	2.59	0.70	0.86	3.35	19368	1263	3	0	0	0	9615	logfile
✔	7MQD	23943	2022-05-15	2021-05-05	3.25	3.21	3.21	3.3	0.003	0.62	0.0	0.05	13.35	0.00	2.456	2.33	0.00	1.0	99.0	0.0	1.04	0.75	0.83	3.89	3.3	0.003	0.49	0.0	0.04	14.25	0.00	2.268	4.31	0.00	1.1	98.9	0.0	1.76	1.29	0.78	0.87	4.30	11960	1592	16	16	0	0	0	logfile
✔	7Ji0	22341	2022-05-12	2020-07-21	2.95	3.30	3.08	3.2	0.003	0.48	0.0	0.04	12.97	0.00	2.233	4.08	5.91	4.5	95.5	0.0	-3.04	0.73	0.84	4.32	3.2	0.003	0.49	0.0	0.04	15.52	0.00	2.212	4.08	2.46	4.0	96.0	0.0	1.31	0.46	0.70	0.82	3.40	3556	432	4	0	0	0	0	logfile
✔	7VFD	31949	2022-05-13	2021-09-13	2.25	2.33	2.21	2.3	0.004	0.53	0.0	0.05	12.47	0.00	2.204	3.85	0.60	3.7	96.3	0.0	-0.65	0.81	0.88	6.01	2.3	0.002	0.49	0.0	0.05	15.37	0.00	2.246	3.23	0.47	2.1	97.9	0.0	0.43	1.13	0.80	0.88	5.42	13262	1623	6	0	0	350	0	logfile

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