Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XU5	33459	2022-12-21	2022-05-18	3.1	3.44	2.94	3.2	0.008	0.73	0.0	0.05	13.63	0.00	2.104	2.98	0.00	3.9	96.1	0.0	-1.17	0.84	0.82	2.48	3.2	0.003	0.48	0.0	0.04	13.96	0.00	1.986	5.77	0.00	3.6	96.4	0.0	-0.32	0.31	0.85	0.85	2.16	44292	2814	12	0	45	0	21549	logfile
✔	7S3i	24825	2022-12-11	2021-09-07	2.51	2.95	2.28	2.8	0.002	0.44	0.0	0.04	13.63	0.00	2.088	6.17	0.00	2.1	97.9	0.0	1.36	0.80	0.87	3.90	2.8	0.002	0.48	0.0	0.04	16.10	0.00	2.163	6.60	1.04	1.7	98.3	0.0	2.05	0.93	0.76	0.88	3.45	8094	1023	5	0	0	0	0	logfile
✔	7NKQ	12446	2022-12-12	2021-02-18	2.98	3.25	—	3.1	0.004	0.49	0.0	0.04	13.52	0.00	2.018	7.16	0.00	2.7	97.3	0.0	1.39	0.81	0.81	2.98	3.1	0.003	0.48	0.0	0.04	15.76	0.00	2.010	7.06	0.87	2.3	97.7	0.0	2.24	0.31	0.82	0.84	2.58	10621	714	8	0	0	0	5312	logfile
✔	7oLA	12975	2022-12-14	2021-05-19	3.3	3.85	3.21	3.3	0.004	0.59	0.0	0.04	15.07	0.00	2.023	7.61	0.00	2.7	97.3	0.0	1.22	0.88	0.85	2.96	3.3	0.002	0.48	0.0	0.04	15.93	0.00	2.008	8.42	0.14	2.7	97.3	0.0	1.20	0.89	0.88	0.88	2.80	19719	2394	10	0	7	0	0	logfile
✔	6YE4	10789	2022-12-12	2020-03-24	3.2	3.33	3.07	3.3	0.026	1.69	0.0	0.10	14.61	0.01	2.373	3.02	0.00	0.9	99.1	0.0	-3.36	0.73	0.88	2.50	3.3	0.002	0.48	0.0	0.03	16.29	0.00	2.383	4.86	0.00	2.3	97.7	0.0	4.08	0.94	0.65	0.85	1.25	9140	1180	10	0	5	0	0	logfile
✔	7STL	25432	2022-12-15	2021-11-14	2.95	3.30	—	3.2	0.004	0.75	0.0	0.04	10.31	0.00	2.190	0.38	0.15	2.3	97.7	0.0	1.82	0.67	0.82	3.24	3.2	0.003	0.48	0.0	0.04	13.95	0.00	2.109	2.72	0.74	3.5	96.4	0.1	1.61	0.57	0.65	0.84	3.28	25668	1600	4	0	8	0	12568	logfile
✔	7NJV	12424	2022-12-13	2021-02-17	2.9	2.81	—	2.9	0.003	0.60	0.0	0.04	13.24	0.00	2.179	6.55	0.00	2.5	97.5	0.0	2.26	0.65	0.88	2.67	2.9	0.003	0.48	0.0	0.04	15.39	0.00	2.136	5.34	0.78	1.7	98.3	0.0	2.79	0.30	0.65	0.89	2.63	16463	1118	13	0	1	0	8337	logfile
✔	8D1G	27129	2022-12-13	2022-05-27	2.07	2.29	2.10	2.3	0.006	0.69	0.0	0.04	19.81	0.00	2.207	13.54	0.66	1.2	98.8	0.0	1.81	0.74	0.85	5.81	2.3	0.002	0.48	0.0	0.04	16.91	0.00	2.240	6.59	0.59	1.2	98.8	0.0	2.03	0.90	0.71	0.86	5.46	16201	1735	15	0	61	620	0	logfile
✔	7Z4i	14498	2022-12-13	2022-03-03	3.12	3.94	3.16	3.5	0.003	0.46	0.0	0.04	15.03	0.00	2.236	7.98	0.58	1.5	98.5	0.0	0.81	0.86	0.82	2.56	3.5	0.002	0.48	0.0	0.03	16.14	0.00	2.191	8.74	0.17	1.9	98.1	0.0	1.65	1.73	0.87	0.84	2.73	13820	1338	5	137	2	0	0	logfile
✔	7MQB	23941	2022-12-15	2021-05-05	3.25	3.29	3.22	3.3	0.007	0.72	0.0	0.05	13.00	0.00	2.302	3.12	0.66	0.5	99.5	0.0	1.28	0.81	0.86	4.28	3.3	0.003	0.48	0.0	0.04	14.47	0.00	2.141	4.03	0.82	2.5	97.5	0.0	1.13	0.37	0.82	0.89	4.88	12760	1640	16	16	0	0	0	logfile
✔	7TCP	25816	2022-12-13	2021-12-27	3.84	3.97	—	3.9	0.002	0.37	0.0	0.03	9.57	0.00	2.327	4.21	1.26	2.8	97.2	0.0	2.66	0.70	0.81	2.29	3.9	0.002	0.48	0.0	0.04	12.83	0.00	2.136	4.68	0.20	2.6	97.4	0.0	2.73	0.36	0.71	0.83	2.13	14992	1912	12	0	12	0	0	logfile
✔	7TFB	25868	2022-12-22	2022-01-06	2.28	2.41	—	2.5	0.005	0.60	0.0	0.05	16.67	0.00	1.926	6.95	2.11	5.1	94.9	0.1	-0.03	0.48	0.67	4.05	2.5	0.002	0.48	0.0	0.04	16.82	0.00	1.868	17.93	2.01	5.2	94.8	0.0	0.91	1.03	0.71	0.86	4.28	49630	6328	42	0	28	0	140	logfile
✔	6ZBC	11150	2022-12-14	2020-06-08	3.1	3.91	3.31	3.6	0.007	1.02	0.0	0.05	13.80	0.00	2.449	1.08	0.00	1.3	98.7	0.0	-0.79	0.85	0.80	2.24	3.6	0.002	0.48	0.0	0.03	15.21	0.00	2.074	3.58	0.18	1.1	98.9	0.0	4.31	0.85	0.85	0.80	1.58	19534	1160	4	0	0	0	9902	logfile
✔	7SiP	25147	2022-12-11	2021-10-14	3.0	3.27	—	3.3	0.011	1.17	0.0	0.04	16.74	0.01	2.313	3.17	0.00	0.9	99.1	0.0	0.93	0.63	0.81	2.85	3.3	0.003	0.48	0.0	0.04	15.60	0.00	2.203	3.43	1.74	0.7	99.3	0.0	1.27	0.99	0.59	0.83	2.64	7560	892	12	0	36	20	0	logfile
✔	7oo0	13003	2022-12-13	2021-05-26	3.1	3.05	2.96	3.1	0.012	1.13	0.0	0.07	12.80	0.00	2.131	7.27	0.00	3.1	96.9	0.0	-1.80	0.61	0.78	2.85	3.1	0.003	0.48	0.0	0.04	13.87	0.00	2.313	6.05	0.00	1.5	98.5	0.0	1.59	1.54	0.61	0.79	2.28	16016	1834	14	0	56	0	0	logfile
✔	7oE2	12859	2022-12-12	2021-05-01	2.4	3.30	2.26	2.8	0.006	0.68	0.0	0.05	17.81	0.01	2.179	3.14	2.44	2.2	97.8	0.0	0.75	0.63	0.81	5.16	2.8	0.003	0.48	0.0	0.04	18.06	0.00	2.187	3.18	1.69	2.1	97.9	0.0	1.77	0.81	0.65	0.92	4.25	10589	1375	20	0	0	154	0	logfile
✔	6MRW	9214	2022-12-12	2018-10-15	4.3	4.76	—	4.3	0.006	0.98	0.0	0.04	10.35	0.01	2.080	4.61	0.41	2.1	97.9	0.0	-0.19	0.82	0.84	—	4.3	0.002	0.48	0.0	0.03	11.74	0.00	2.080	6.81	0.00	1.8	98.2	0.0	6.05	1.27	0.83	0.86	—	31346	3990	14	0	0	0	0	logfile
✔	7oo8	13007	2022-12-13	2021-05-26	3.7	2.99	3.39	3.0	0.003	0.40	0.0	0.04	9.89	0.00	2.286	6.45	0.00	1.9	98.1	0.0	2.79	0.65	0.79	2.44	3.0	0.003	0.48	0.0	0.04	14.96	0.00	2.291	10.06	0.27	1.2	98.8	0.0	2.49	0.46	0.65	0.79	2.25	13923	1827	7	0	0	0	0	logfile
✔	7MQF	23945	2022-12-15	2021-05-05	2.88	2.74	2.86	2.8	0.006	0.72	0.0	0.06	11.73	0.00	2.175	1.47	0.00	0.5	99.5	0.0	1.24	0.72	0.87	6.16	2.7	0.003	0.48	0.0	0.04	13.44	0.00	2.256	3.06	0.00	1.0	99.0	0.0	1.02	0.44	0.78	0.91	5.71	12288	1608	16	16	0	0	0	logfile
✔	7oZV	13138	2022-12-12	2021-06-28	3.2	3.08	3.16	3.3	0.007	0.58	0.0	0.04	13.29	0.01	2.202	8.59	0.00	2.6	97.4	0.0	-0.22	0.64	0.79	3.09	3.3	0.003	0.48	0.0	0.04	15.36	0.00	2.139	8.29	0.00	2.3	97.7	0.0	-0.10	1.89	0.72	0.83	2.74	8409	991	6	22	2	0	0	logfile

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