Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Y9X	33695	2023-04-24	2022-06-26	2.49	2.67	2.52	2.7	0.004	0.52	0.0	0.04	9.50	0.00	2.130	5.49	0.31	1.6	98.4	0.0	-0.15	0.70	0.82	4.82	2.7	0.002	0.48	0.0	0.04	14.67	0.00	2.206	6.55	1.30	1.4	98.6	0.0	1.17	1.95	0.67	0.82	3.94	18662	2192	4	38	4	0	0	logfile
✔	7RHi	24462	2023-04-23	2021-07-17	3.31	3.09	—	3.2	0.012	0.71	0.0	0.05	13.67	0.00	2.230	6.80	0.00	3.1	96.9	0.0	-0.39	0.68	0.83	1.85	3.2	0.002	0.48	0.0	0.04	14.97	0.00	2.238	11.27	0.25	2.9	97.1	0.0	1.39	0.89	0.70	0.87	1.92	14717	1784	8	0	4	0	0	logfile
✔	7MQF	23945	2023-04-26	2021-05-05	2.88	2.74	2.86	2.8	0.006	0.72	0.0	0.06	11.73	0.00	2.175	1.01	0.00	0.5	99.5	0.0	1.24	0.72	0.87	6.16	2.7	0.003	0.48	0.0	0.04	13.43	0.00	2.255	2.60	0.00	1.0	99.0	0.0	1.00	0.44	0.78	0.91	5.71	12288	1608	16	16	0	0	0	logfile
✔	7Z0Z	14435	2023-04-21	2022-02-24	2.68	2.92	2.79	2.8	0.006	0.72	6.0	0.05	14.67	0.00	2.092	7.37	0.54	1.9	98.0	0.2	0.45	0.74	0.86	4.83	2.8	0.003	0.48	0.0	0.04	16.57	0.00	2.174	5.16	1.06	2.0	97.8	0.2	1.32	0.44	0.78	0.90	4.34	29466	3510	6	0	0	0	0	logfile
✔	7RZU	24778	2023-04-19	2021-08-27	2.3	2.32	—	2.0	0.006	0.50	0.0	0.04	13.61	0.01	2.212	7.50	0.00	2.9	97.1	0.0	1.69	0.77	0.78	1.84	2.0	0.002	0.48	0.0	0.03	15.88	0.00	2.308	6.69	1.40	0.0	100.0	0.0	5.49	0.47	0.80	0.81	1.54	2439	324	6	0	0	0	0	logfile
✔	7STL	25432	2023-04-27	2021-11-14	2.95	3.30	—	3.2	0.004	0.75	0.0	0.04	10.31	0.00	2.190	0.38	0.15	2.3	97.7	0.0	1.82	0.67	0.82	3.24	3.2	0.004	0.48	0.0	0.04	13.91	0.00	2.104	2.76	0.59	3.5	96.3	0.1	1.65	0.57	0.66	0.84	3.21	25668	1600	4	0	8	0	12568	logfile
✔	7XKQ	33264	2023-04-27	2022-04-20	3.3	3.61	3.27	3.3	0.003	0.50	0.0	0.04	13.48	0.00	1.967	4.96	0.00	2.0	98.0	0.0	1.22	0.86	0.89	2.81	3.3	0.002	0.48	0.0	0.04	14.84	0.00	1.983	6.06	0.11	2.2	97.8	0.0	1.46	0.40	0.87	0.91	2.38	25299	3259	15	0	13	0	0	logfile
✔	7oo8	13007	2023-04-23	2021-05-26	3.7	2.99	3.39	3.0	0.003	0.40	0.0	0.04	9.89	0.00	2.286	6.45	0.00	1.9	98.1	0.0	2.79	0.65	0.79	2.44	3.0	0.002	0.48	0.0	0.04	14.80	0.00	2.290	9.85	0.20	1.2	98.8	0.0	2.54	0.44	0.65	0.79	2.22	13923	1827	7	0	0	0	0	logfile
✔	7PXH	13703	2023-04-28	2021-10-08	2.59	3.11	2.60	3.0	0.006	0.79	0.0	0.04	13.60	0.00	2.079	4.27	0.45	1.8	98.2	0.0	0.70	0.77	0.87	3.60	3.0	0.003	0.48	0.0	0.04	15.06	0.00	2.187	5.38	1.58	2.1	97.9	0.0	1.21	0.43	0.77	0.90	3.69	28922	3540	8	0	39	0	0	logfile
✔	7RHH	24461	2023-04-23	2021-07-17	3.31	3.03	—	3.0	0.012	0.65	0.0	0.05	13.02	0.00	2.231	5.58	0.06	2.2	97.8	0.0	0.69	0.68	0.84	2.48	3.0	0.002	0.48	0.0	0.04	14.33	0.00	2.191	9.27	0.06	2.1	97.9	0.0	1.55	0.38	0.69	0.87	2.40	14717	1784	8	0	4	0	0	logfile
✔	6ZBG	11154	2023-04-25	2020-06-08	3.2	3.97	3.37	3.6	0.010	1.15	0.0	0.07	13.62	0.01	2.468	1.13	0.00	1.1	98.9	0.0	0.72	0.84	0.78	2.20	3.6	0.002	0.48	0.0	0.03	15.23	0.00	2.139	4.51	0.09	0.8	99.2	0.0	4.37	1.86	0.85	0.79	1.51	19534	1160	4	0	0	0	9902	logfile
✔	6VRS	21371	2023-04-22	2020-02-09	2.7	3.22	—	2.9	0.008	1.49	5.0	0.11	14.48	0.01	2.012	2.39	1.82	3.1	96.6	0.3	-0.31	0.95	0.92	6.32	2.9	0.003	0.48	0.0	0.04	15.07	0.00	2.075	6.00	0.17	2.3	97.7	0.0	2.16	1.01	0.94	0.90	4.30	12208	1548	12	0	8	16	0	logfile
✔	6MRW	9214	2023-04-22	2018-10-15	4.3	4.76	—	4.3	0.006	0.98	0.0	0.04	10.35	0.01	2.080	4.61	0.41	2.1	97.9	0.0	-0.19	0.82	0.84	—	4.3	0.002	0.48	0.0	0.03	11.78	0.00	2.084	7.07	0.00	1.9	98.1	0.0	6.00	1.27	0.83	0.86	—	31346	3990	14	0	0	0	0	logfile
✔	7LFX	23308	2023-04-23	2021-01-19	3.1	2.80	—	3.0	0.012	0.64	0.0	0.05	13.11	0.00	2.226	9.82	0.25	2.3	97.7	0.0	-1.18	0.64	0.81	2.40	3.0	0.002	0.48	0.0	0.04	15.75	0.00	2.269	13.28	0.31	3.3	96.7	0.0	1.06	0.81	0.65	0.85	2.46	14846	1800	8	0	6	0	0	logfile
✔	7RH9	24458	2023-04-23	2021-07-16	2.61	2.09	—	2.5	0.003	0.57	0.0	0.04	13.27	0.01	2.214	5.79	0.00	1.3	98.7	0.0	1.30	0.64	0.84	4.07	2.5	0.002	0.48	0.0	0.04	15.63	0.00	2.149	8.70	0.81	1.2	98.8	0.0	2.64	0.90	0.63	0.86	4.00	14680	1792	4	0	0	0	0	logfile
✔	8F7B	28901	2023-04-23	2022-11-18	3.15	3.53	3.17	3.5	0.005	0.79	0.0	0.04	17.29	0.00	2.263	5.78	0.23	2.4	97.6	0.0	1.06	0.63	0.79	2.19	3.5	0.002	0.48	0.0	0.04	16.28	0.00	2.227	7.36	0.34	2.1	97.9	0.0	2.15	1.13	0.59	0.79	2.11	16166	1894	18	0	17	6	0	logfile
✔	8E28	27828	2023-04-20	2022-08-14	3.1	3.26	3.15	3.2	0.004	0.83	0.0	0.05	16.45	0.01	2.316	3.83	0.00	1.5	98.5	0.0	-1.72	0.75	0.85	3.17	3.2	0.002	0.48	0.0	0.04	17.09	0.00	2.204	5.32	0.49	1.5	98.5	0.0	0.26	0.73	0.76	0.87	2.64	5789	690	2	15	0	0	0	logfile
✔	7UKG	26580	2023-04-20	2022-04-01	2.24	2.56	2.27	2.5	0.006	0.58	0.0	0.04	13.16	0.00	2.208	6.08	0.00	1.8	98.2	0.0	2.95	0.68	0.88	4.70	2.5	0.003	0.48	0.0	0.04	13.81	0.00	2.354	5.86	0.22	1.8	98.2	0.0	3.84	0.22	0.70	0.90	4.29	8652	1128	10	0	4	0	0	logfile
✔	7SFJ	25079	2023-04-20	2021-10-04	2.74	3.33	—	3.4	0.007	0.94	0.0	0.04	18.41	0.01	2.308	3.87	1.28	2.5	97.5	0.0	2.20	0.62	0.78	3.51	3.4	0.002	0.48	0.0	0.04	17.67	0.00	2.281	5.23	1.85	3.2	96.8	0.0	2.36	0.47	0.58	0.77	2.97	7377	852	9	0	24	3	0	logfile
✔	7oJN	12956	2023-04-24	2021-05-16	2.92	3.27	2.89	2.9	0.004	0.41	0.0	0.04	9.23	0.00	1.859	3.51	0.93	4.7	95.2	0.1	0.93	0.88	0.83	3.05	3.0	0.003	0.48	0.0	0.04	12.90	0.00	2.095	5.50	1.53	5.0	95.0	0.0	0.73	2.62	0.91	0.90	3.01	16991	2010	6	39	7	0	0	logfile

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