Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SFJ	25079	2023-02-18	2021-10-04	2.74	3.33	—	3.4	0.007	0.94	0.0	0.04	18.41	0.01	2.308	3.87	1.28	2.5	97.5	0.0	2.20	0.62	0.78	3.51	3.4	0.002	0.48	0.0	0.04	17.67	0.00	2.281	5.23	1.85	3.2	96.8	0.0	2.36	0.47	0.58	0.77	2.97	7377	852	9	0	24	3	0	logfile
✔	7XKQ	33264	2023-02-25	2022-04-20	3.3	3.61	3.27	3.3	0.003	0.50	0.0	0.04	13.48	0.00	1.967	4.96	0.00	2.0	98.0	0.0	1.22	0.86	0.89	2.81	3.3	0.002	0.48	0.0	0.04	14.84	0.00	1.983	6.06	0.11	2.2	97.8	0.0	1.46	0.40	0.87	0.91	2.38	25299	3259	15	0	13	0	0	logfile
✔	8D1M	27135	2023-02-21	2022-05-27	3.11	3.41	3.10	3.4	0.006	0.87	0.0	0.06	15.34	0.00	2.396	12.79	1.18	2.7	97.1	0.3	1.27	0.63	0.86	3.50	3.4	0.002	0.49	0.0	0.04	16.53	0.00	2.258	7.99	0.00	1.8	98.2	0.0	1.40	0.92	0.61	0.87	2.41	15590	1880	5	0	0	0	0	logfile
✔	6YE4	10789	2023-02-19	2020-03-24	3.2	3.33	3.07	3.3	0.026	1.69	0.0	0.10	14.61	0.01	2.373	3.02	0.00	0.9	99.1	0.0	-3.36	0.73	0.88	2.50	3.3	0.003	0.49	0.0	0.03	16.29	0.00	2.376	4.96	0.00	2.4	97.6	0.0	3.87	0.94	0.65	0.85	1.22	9140	1180	10	0	5	0	0	logfile
✔	7P0Z	13153	2023-02-20	2021-07-01	2.43	2.02	2.41	2.2	0.016	0.94	0.0	0.06	14.02	0.01	2.141	7.29	0.00	4.3	95.7	0.0	1.90	0.83	0.86	2.91	2.3	0.002	0.49	0.0	0.03	18.12	0.00	2.239	4.38	1.64	0.7	99.3	0.0	5.47	0.55	0.84	0.87	2.18	12873	1652	7	0	0	0	0	logfile
✔	7STN	25434	2023-02-25	2021-11-14	3.19	3.43	—	3.4	0.008	0.75	0.0	0.04	9.95	0.00	2.366	1.05	0.15	2.2	97.8	0.0	2.30	0.66	0.80	3.21	3.4	0.004	0.49	0.0	0.04	12.77	0.00	2.129	3.31	0.00	4.2	95.8	0.0	1.91	1.29	0.64	0.82	2.88	25188	1580	4	0	10	0	12256	logfile
✔	7V0M	26944	2023-02-17	2022-05-10	2.7	2.46	2.64	2.5	0.003	0.56	0.0	0.04	18.10	0.00	2.240	3.55	1.29	3.3	96.7	0.0	0.52	0.56	0.89	4.90	2.5	0.003	0.49	0.0	0.04	18.18	0.00	2.176	4.37	2.33	3.3	96.7	0.0	1.83	0.25	0.55	0.88	4.09	3724	483	4	0	0	60	0	logfile
✔	7TF8	25865	2023-02-25	2022-01-06	3.36	3.60	3.29	3.4	0.004	0.70	0.0	0.05	11.82	0.01	2.280	2.75	0.07	3.4	96.6	0.0	-0.90	0.85	0.85	2.93	3.4	0.003	0.49	0.0	0.04	13.03	0.00	2.143	5.65	0.07	3.0	97.0	0.0	0.23	0.31	0.87	0.88	2.62	25732	3153	22	0	78	0	0	logfile
✔	7MiS	23863	2023-02-25	2021-04-17	2.8	2.48	—	2.8	0.003	0.50	0.0	0.04	14.51	0.00	1.917	3.78	0.00	3.8	96.2	0.0	0.91	0.69	0.80	3.35	2.8	0.003	0.49	0.0	0.04	16.11	0.00	1.856	4.05	0.63	3.8	96.2	0.0	1.04	0.35	0.70	0.82	3.05	25893	1616	6	0	6	0	12854	logfile
✔	7KoD	22972	2023-02-26	2020-11-08	1.655	2.30	—	1.9	0.001	0.33	0.0	0.03	8.49	0.00	2.288	0.80	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	2.0	0.005	0.49	0.0	0.04	13.86	0.00	1.860	2.84	0.22	0.6	99.4	0.0	5.19	0.83	0.87	0.93	8.00	68186	4128	48	0	0	1727	32643	logfile
✔	6DWB	8924	2023-02-22	2018-06-26	3.3	3.43	—	3.4	0.007	0.66	0.0	0.04	7.21	0.01	2.161	2.34	0.00	5.1	94.9	0.0	-6.22	0.61	0.75	2.51	3.4	0.003	0.49	0.0	0.03	13.59	0.00	2.142	4.35	0.10	3.6	96.4	0.0	4.58	1.15	0.75	0.90	2.83	18360	2340	30	0	0	0	0	logfile
✔	7X8W	33059	2023-02-18	2022-03-15	3.1	3.76	3.14	3.6	0.003	0.50	0.0	0.04	14.07	0.00	2.257	4.44	0.00	5.8	94.2	0.0	-1.35	0.73	0.85	4.31	3.6	0.002	0.49	0.0	0.04	15.11	0.00	2.055	5.47	0.27	4.2	95.8	0.0	-1.13	0.91	0.69	0.82	4.20	6674	435	5	0	8	0	3214	logfile
✔	7T4N	25681	2023-02-17	2021-12-10	2.35	2.66	2.38	2.5	0.002	0.42	0.0	0.04	16.22	0.00	2.207	4.39	1.25	1.0	99.0	0.0	0.87	0.63	0.85	3.82	2.5	0.003	0.49	0.0	0.04	16.48	0.00	2.284	5.93	1.53	1.0	99.0	0.0	1.61	0.24	0.66	0.87	3.71	6476	803	2	0	0	0	0	logfile
✔	7Uo9	26642	2023-02-24	2022-04-12	3.13	3.95	3.13	3.6	0.007	0.62	0.0	0.04	11.80	0.00	1.819	5.03	0.25	5.9	94.1	0.0	-0.67	0.88	0.82	3.15	3.6	0.003	0.49	0.0	0.04	12.82	0.00	1.831	6.64	0.08	3.8	96.2	0.0	0.60	1.60	0.87	0.80	2.94	23863	1375	12	67	4	245	11305	logfile
✔	8CYA	27072	2023-02-22	2022-05-23	2.7	3.50	2.73	3.0	0.002	0.44	0.0	0.04	11.93	0.00	1.935	6.76	0.06	4.8	95.0	0.2	0.52	0.83	0.75	1.85	3.1	0.004	0.49	0.0	0.04	13.00	0.00	1.982	10.17	0.53	5.3	94.6	0.2	0.03	0.39	0.85	0.79	2.17	57833	3681	29	0	88	0	27935	logfile
✔	7W0A	32236	2023-02-26	2021-11-18	3.12	3.32	—	3.3	0.004	0.53	0.0	0.04	13.55	0.00	2.186	7.03	0.00	3.0	97.0	0.0	0.62	0.74	0.81	2.98	3.3	0.003	0.49	0.0	0.04	14.82	0.00	2.189	6.23	0.19	2.7	97.3	0.0	0.95	0.47	0.78	0.86	2.40	26898	2988	8	126	0	0	0	logfile
✔	7oCA	12802	2023-02-27	2021-04-26	3.4	3.03	—	3.2	0.009	0.95	0.0	0.04	14.77	0.00	2.080	4.64	0.15	3.5	96.5	0.0	0.20	0.72	0.80	3.80	3.1	0.003	0.49	0.0	0.04	15.27	0.00	2.221	4.74	0.15	1.9	98.1	0.0	1.53	0.43	0.75	0.85	3.29	29294	3802	22	0	72	0	0	logfile
✔	7SK9	25177	2023-02-20	2021-10-19	3.7	4.01	—	3.9	0.007	0.83	0.0	0.24	13.94	0.00	2.028	4.76	0.00	4.4	95.6	0.0	1.15	0.71	0.81	1.92	3.9	0.003	0.49	0.0	0.04	14.87	0.00	2.033	6.17	0.00	4.0	96.0	0.0	1.35	0.43	0.70	0.81	1.96	11261	716	4	0	3	0	5561	logfile
✔	7LGU	23329	2023-02-20	2021-01-21	2.3	2.77	—	2.7	0.003	0.93	0.0	0.04	14.18	0.00	2.197	8.08	1.15	1.6	98.4	0.0	1.41	0.64	0.84	5.76	2.7	0.003	0.49	0.0	0.04	14.68	0.00	2.175	5.63	0.88	1.6	98.4	0.0	1.33	0.69	0.64	0.85	5.75	11597	1360	6	0	110	111	0	logfile
✔	7T2E	25611	2023-02-16	2021-12-03	2.7	3.14	—	3.0	0.003	0.54	0.0	0.04	16.11	0.00	2.242	1.92	1.18	0.3	99.7	0.0	0.14	0.34	0.84	5.04	3.0	0.002	0.49	0.0	0.04	16.21	0.00	2.222	2.35	1.18	0.3	99.7	0.0	0.45	0.13	0.36	0.86	4.79	2390	312	2	0	0	0	0	logfile

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