Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XKQ	33264	2023-08-18	2022-04-20	3.3	3.61	3.27	3.3	0.003	0.50	0.0	0.04	13.48	0.00	1.967	4.96	0.00	2.0	98.0	0.0	1.22	0.86	0.89	2.81	3.3	0.002	0.48	0.0	0.04	14.84	0.00	1.983	6.06	0.11	2.2	97.8	0.0	1.46	0.40	0.87	0.91	2.38	25299	3259	15	0	13	0	0	logfile
✔	8EHR	28150	2023-08-10	2022-09-14	3.2	2.95	3.03	3.1	0.003	0.55	0.0	0.05	13.08	0.00	2.374	2.29	0.00	0.0	100.0	0.0	1.82	0.58	0.85	3.24	3.1	0.002	0.48	0.0	0.04	15.23	0.00	2.320	4.65	0.37	0.9	99.1	0.0	1.26	1.17	0.58	0.87	3.27	7350	1022	7	0	0	0	0	logfile
✔	7oRN	13043	2023-08-13	2021-06-06	2.8	2.83	—	2.8	0.004	0.59	1.0	0.04	12.58	0.00	1.978	4.09	0.19	2.1	97.9	0.0	1.14	0.82	0.89	4.23	2.8	0.003	0.48	0.0	0.04	15.17	0.00	1.981	5.36	0.76	2.5	97.5	0.0	1.27	0.36	0.78	0.91	3.88	14811	1700	6	35	3	92	0	logfile
✔	7SFJ	25079	2023-08-10	2021-10-04	2.74	3.33	—	3.4	0.007	0.94	0.0	0.04	18.41	0.01	2.308	3.87	1.28	2.5	97.5	0.0	2.20	0.62	0.78	3.51	3.4	0.002	0.48	0.0	0.04	17.67	0.00	2.281	5.23	1.85	3.2	96.8	0.0	2.36	0.47	0.58	0.77	2.97	7377	852	9	0	24	3	0	logfile
✔	7XNV	33327	2023-08-15	2022-04-29	3.4	3.18	3.11	3.2	0.005	1.07	0.0	0.05	16.87	0.00	2.213	7.73	0.90	1.0	98.4	0.6	0.24	0.69	0.85	2.90	3.2	0.003	0.48	0.0	0.04	16.78	0.00	2.243	5.32	0.21	1.1	98.9	0.0	2.46	0.40	0.70	0.88	2.37	18378	2088	24	0	114	0	0	logfile
✔	8GS2	34218	2023-08-14	2022-09-04	2.84	3.09	2.94	3.1	0.002	0.42	0.0	0.04	10.20	0.00	1.579	4.49	0.30	1.2	98.8	0.0	1.18	0.74	0.89	4.67	3.1	0.002	0.48	0.0	0.04	15.09	0.00	2.185	6.70	1.56	1.7	98.3	0.0	1.43	1.32	0.74	0.90	4.14	16935	1916	7	64	4	0	0	logfile
✔	8G9F	29864	2023-08-24	2023-02-21	3.2	3.77	3.13	3.2	0.003	0.50	0.0	0.04	16.16	0.00	2.257	2.77	0.00	3.1	96.9	0.0	0.34	0.89	0.83	3.53	3.2	0.002	0.48	0.0	0.04	15.99	0.00	2.029	3.81	0.05	2.6	97.4	0.0	1.72	2.00	0.90	0.87	3.33	37540	2321	7	0	4	0	18758	logfile
✔	8E28	27828	2023-08-09	2022-08-14	3.1	3.26	3.15	3.2	0.004	0.83	0.0	0.05	16.45	0.01	2.316	3.83	0.00	1.5	98.5	0.0	-1.72	0.75	0.85	3.17	3.2	0.002	0.48	0.0	0.04	17.09	0.00	2.204	5.32	0.49	1.5	98.5	0.0	0.26	0.73	0.76	0.87	2.64	5789	690	2	15	0	0	0	logfile
✔	7XKi	33254	2023-08-22	2022-04-19	3.4	3.86	3.39	3.8	0.002	0.41	0.0	0.04	13.46	0.00	2.299	1.34	0.00	2.5	97.5	0.0	5.17	0.60	0.76	2.60	3.8	0.003	0.48	0.0	0.04	14.62	0.00	2.187	4.18	0.06	2.8	97.2	0.0	4.42	1.10	0.54	0.76	2.54	32280	1992	24	0	48	0	15996	logfile
✔	7NKD	12438	2023-08-11	2021-02-17	3.12	3.57	—	3.2	0.003	0.45	0.0	0.04	14.50	0.00	2.134	6.59	0.00	1.7	98.3	0.0	2.45	0.85	0.81	2.57	3.2	0.003	0.48	0.0	0.04	15.43	0.00	2.128	7.12	0.00	1.5	98.5	0.0	3.15	0.91	0.85	0.83	2.19	9555	643	8	0	0	0	4768	logfile
✔	8DBG	27283	2023-08-13	2022-06-14	2.2	2.20	2.25	2.2	0.007	0.69	0.0	0.05	15.18	0.00	1.958	4.92	1.97	3.4	96.6	0.0	0.54	0.71	0.86	6.29	2.2	0.002	0.48	0.0	0.05	16.08	0.00	1.996	5.40	2.23	3.3	96.7	0.0	1.17	0.31	0.74	0.90	5.48	14442	1854	18	0	30	12	0	logfile
✔	7RHH	24461	2023-08-13	2021-07-17	3.31	3.03	—	3.0	0.012	0.65	0.0	0.05	13.02	0.00	2.231	5.58	0.06	2.2	97.8	0.0	0.69	0.68	0.84	2.48	3.0	0.002	0.48	0.0	0.04	14.33	0.00	2.191	9.27	0.06	2.1	97.9	0.0	1.55	0.38	0.69	0.87	2.40	14717	1784	8	0	4	0	0	logfile
✔	8F7B	28901	2023-08-14	2022-11-18	3.15	3.53	3.17	3.5	0.005	0.79	0.0	0.04	17.29	0.00	2.263	5.78	0.23	2.4	97.6	0.0	1.06	0.63	0.79	2.19	3.5	0.002	0.48	0.0	0.04	16.28	0.00	2.227	7.36	0.34	2.1	97.9	0.0	2.15	1.13	0.59	0.79	2.11	16166	1894	18	0	17	6	0	logfile
✔	7MQF	23945	2023-08-17	2021-05-05	2.88	2.74	2.86	2.8	0.006	0.72	0.0	0.06	11.73	0.00	2.175	1.01	0.00	0.5	99.5	0.0	1.24	0.72	0.87	6.16	2.7	0.003	0.48	0.0	0.04	13.43	0.00	2.255	2.60	0.00	1.0	99.0	0.0	1.00	0.44	0.78	0.91	5.71	12288	1608	16	16	0	0	0	logfile
✔	8BVQ	16268	2023-08-18	2022-12-05	3.3	3.33	3.29	3.5	0.004	0.55	0.0	0.04	16.05	0.00	2.088	7.55	0.31	4.1	95.9	0.0	-0.42	0.54	0.73	1.75	3.5	0.002	0.48	0.0	0.04	16.24	0.00	2.051	7.03	0.39	5.0	95.0	0.0	-0.40	0.28	0.60	0.81	1.87	23125	1518	6	0	0	0	11250	logfile
✔	7XDE	33145	2023-08-15	2022-03-26	2.72	3.00	2.86	3.1	0.011	0.82	0.0	0.05	13.03	0.00	2.110	8.62	0.63	1.2	98.8	0.0	0.38	0.68	0.81	3.27	3.1	0.003	0.48	0.0	0.04	15.72	0.00	2.132	8.20	1.42	1.6	98.4	0.0	0.92	1.11	0.64	0.80	2.93	17896	2248	8	0	4	0	0	logfile
✔	7ZH4	14721	2023-08-09	2022-04-05	2.49	2.65	2.46	2.6	0.005	0.88	0.0	0.04	14.07	0.00	2.231	4.63	0.00	2.3	97.7	0.0	-0.97	0.56	0.86	4.93	2.6	0.002	0.48	0.0	0.04	16.92	0.00	2.240	5.14	1.51	1.4	98.6	0.0	1.08	2.14	0.52	0.85	3.74	2957	362	4	0	2	39	0	logfile
✔	7K0N	22604	2023-08-15	2020-09-04	3.1	3.55	—	3.5	0.004	0.69	0.0	0.04	13.94	0.00	2.227	6.22	0.32	2.5	97.5	0.0	0.72	0.73	0.82	2.88	3.5	0.002	0.48	0.0	0.04	15.30	0.00	2.253	5.17	0.05	2.0	98.0	0.0	1.15	1.06	0.72	0.84	2.63	18470	2340	14	0	18	0	0	logfile
✔	6U6i	20666	2023-08-21	2019-08-29	3.12	3.43	—	3.4	0.006	0.49	0.0	0.07	11.32	0.00	2.029	6.12	0.00	7.6	92.4	0.0	-3.59	0.80	0.80	4.39	3.3	0.003	0.48	0.0	0.04	13.01	0.00	2.097	5.71	0.00	5.0	95.0	0.0	-0.04	0.51	0.81	0.83	4.17	21701	1496	9	0	11	0	10337	logfile
✔	7PXH	13703	2023-08-20	2021-10-08	2.59	3.11	2.60	3.0	0.006	0.79	0.0	0.04	13.60	0.00	2.079	4.27	0.45	1.8	98.2	0.0	0.70	0.77	0.87	3.60	3.0	0.003	0.48	0.0	0.04	15.06	0.00	2.187	5.38	1.58	2.1	97.9	0.0	1.21	0.43	0.77	0.90	3.69	28922	3540	8	0	39	0	0	logfile

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