Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7X8W	33059	2023-04-20	2022-03-15	3.1	3.76	3.14	3.6	0.004	0.60	0.0	0.05	14.37	0.00	2.257	4.44	0.00	5.8	94.2	0.0	-1.35	0.73	0.85	4.31	3.6	0.002	0.50	0.0	0.04	15.39	0.00	2.157	5.17	0.55	4.2	95.8	0.0	-1.11	0.90	0.69	0.81	4.20	6674	435	5	0	8	0	3214	logfile
✔	7LCJ	23275	2023-04-19	2021-01-11	2.82	3.02	2.78	3.1	0.011	1.19	3.0	0.08	13.36	0.01	2.216	8.89	1.16	3.9	96.1	0.0	0.54	0.46	0.80	2.75	3.1	0.002	0.50	0.0	0.03	15.46	0.00	2.255	4.21	1.45	2.1	97.9	0.0	1.41	1.70	0.48	0.82	2.84	3264	390	1	0	1	17	0	logfile
✔	8FHQ	29099	2023-04-20	2022-12-14	2.81	3.05	2.83	3.1	0.008	0.82	0.0	0.05	13.57	0.01	2.303	4.02	0.65	3.5	96.5	0.0	-1.14	0.62	0.86	3.75	3.1	0.003	0.50	0.0	0.04	14.90	0.00	2.261	3.14	0.52	2.3	97.7	0.0	0.50	0.90	0.62	0.86	3.57	7306	950	4	0	4	0	0	logfile
✔	8FHT	29103	2023-04-20	2022-12-15	3.02	3.34	3.05	3.2	0.004	0.63	3.0	0.05	12.98	0.00	2.220	6.63	0.96	1.8	98.2	0.0	2.06	0.60	0.80	2.43	3.3	0.003	0.50	0.0	0.04	14.20	0.00	2.169	6.85	0.41	2.3	97.7	0.0	2.48	0.39	0.57	0.80	2.13	7006	936	4	0	4	0	0	logfile
✔	7oEB	12863	2023-04-22	2021-05-02	3.04	3.38	3.05	3.0	0.004	0.56	0.0	0.04	14.39	0.00	2.121	7.62	0.53	4.0	95.7	0.2	0.94	0.87	0.82	3.00	3.0	0.002	0.50	0.0	0.04	15.52	0.00	2.033	7.92	0.08	3.7	96.3	0.0	1.71	1.78	0.90	0.88	2.69	11682	1434	3	6	3	1	0	logfile
✔	7ZGo	14709	2023-04-20	2022-04-04	2.55	2.04	2.53	2.6	0.008	1.24	0.0	0.06	16.84	0.00	2.170	9.40	0.00	3.4	96.6	0.0	1.35	0.50	0.76	3.14	2.6	0.002	0.50	0.0	0.04	16.48	0.00	2.254	8.96	0.52	3.1	96.9	0.0	2.18	1.09	0.53	0.79	3.51	7754	940	6	0	21	24	0	logfile
✔	7NJK	12377	2023-04-28	2021-02-17	2.52	2.49	—	2.2	0.004	0.51	0.0	0.04	14.52	0.00	2.061	4.73	0.00	2.4	97.6	0.1	1.64	0.85	0.87	4.35	2.2	0.003	0.50	0.0	0.04	15.66	0.00	1.782	5.45	0.31	2.2	97.7	0.0	1.90	1.68	0.86	0.89	4.10	74650	4934	31	0	11	16	37359	logfile
✔	7NJM	12387	2023-04-28	2021-02-17	2.84	2.63	—	2.7	0.003	0.50	0.0	0.04	14.84	0.00	1.935	6.68	0.00	2.7	97.3	0.0	1.41	0.85	0.86	3.49	2.7	0.003	0.50	0.0	0.04	16.33	0.00	1.756	6.60	0.49	2.3	97.6	0.0	1.55	0.90	0.86	0.88	3.33	74611	4932	31	0	11	16	37328	logfile
✔	7JJo	22357	2023-04-23	2020-07-27	2.6	2.72	—	2.6	0.003	0.48	0.0	0.04	14.21	0.00	2.102	3.07	1.78	2.0	98.0	0.0	-1.12	0.55	0.83	3.47	2.6	0.003	0.50	0.0	0.04	16.63	0.00	2.069	3.77	1.90	1.5	98.5	0.0	1.44	0.84	0.58	0.86	3.24	15641	1002	5	0	1	0	7749	logfile
✔	6ZBD	11151	2023-04-25	2020-06-08	3.21	3.97	3.37	3.6	0.010	1.19	0.0	0.08	13.68	0.01	2.466	0.97	0.00	0.9	99.1	0.0	0.87	0.85	0.78	1.78	3.6	0.002	0.50	0.0	0.03	15.08	0.00	2.000	5.02	0.27	1.5	98.5	0.0	3.93	2.62	0.86	0.80	1.77	19519	1159	4	0	0	0	9896	logfile
✔	7oJL	12955	2023-04-22	2021-05-16	3.3	3.67	3.30	3.4	0.003	0.46	0.0	0.04	11.20	0.00	1.827	7.40	2.98	8.2	91.8	0.1	-2.78	0.86	0.82	2.82	3.4	0.002	0.50	0.0	0.04	13.53	0.00	2.061	8.69	0.22	6.4	93.5	0.1	0.25	1.32	0.89	0.88	2.44	12842	1498	4	33	1	0	0	logfile
✔	7S3i	24825	2023-04-20	2021-09-07	2.51	2.95	2.29	2.8	0.002	0.44	0.0	0.04	13.63	0.00	2.088	5.73	0.00	2.1	97.9	0.0	1.36	0.80	0.87	3.90	2.8	0.003	0.50	0.0	0.04	16.13	0.00	2.094	5.73	1.15	1.8	98.2	0.0	1.82	0.93	0.76	0.88	3.50	8094	1023	5	0	0	0	0	logfile
✔	7V21	31633	2023-04-22	2021-08-07	3.08	3.18	—	3.1	0.004	0.73	0.0	0.05	13.48	0.00	2.266	4.92	0.31	2.6	97.3	0.1	0.95	0.72	0.87	3.52	3.1	0.003	0.50	0.0	0.04	14.90	0.00	2.143	5.68	0.16	2.3	97.7	0.0	1.49	0.44	0.73	0.88	3.08	11903	1505	4	0	0	0	0	logfile
✔	8A03	15046	2023-04-20	2022-05-26	3.2	3.30	3.21	3.3	0.002	0.44	0.0	0.04	14.18	0.00	2.399	3.41	0.00	2.4	97.6	0.0	0.63	0.51	0.84	2.31	3.3	0.002	0.50	0.0	0.05	16.53	0.00	2.187	4.93	0.32	3.0	97.0	0.0	-0.16	0.40	0.50	0.86	2.60	5511	717	3	0	0	0	0	logfile
✔	7TCP	25816	2023-04-23	2021-12-27	3.84	3.97	—	3.9	0.002	0.37	0.0	0.03	9.57	0.00	2.327	4.21	1.26	2.8	97.2	0.0	2.66	0.70	0.81	2.29	3.9	0.003	0.50	0.0	0.04	12.75	0.00	2.113	5.39	0.60	3.3	96.7	0.0	2.51	0.36	0.71	0.83	2.44	14992	1912	12	0	12	0	0	logfile
✔	7RU6	24698	2023-04-20	2021-08-16	4.4	4.33	3.79	4.2	0.003	0.59	0.0	0.04	15.25	0.00	2.027	10.32	0.00	0.3	99.7	0.0	3.15	0.71	0.67	—	4.2	0.002	0.50	0.0	0.03	13.30	0.00	2.118	7.19	0.34	1.9	98.1	0.0	4.08	0.78	0.74	0.70	—	5426	331	2	0	0	0	2725	logfile
✔	7U6V	26381	2023-04-23	2022-03-06	4.1	3.17	4.21	6.8	0.002	0.52	0.0	0.04	13.79	0.00	1.948	13.74	1.57	4.7	95.3	0.0	-0.16	0.64	0.29	—	6.8	0.002	0.50	0.0	0.04	13.89	0.00	1.956	14.79	1.75	6.1	93.9	0.0	-0.54	0.42	0.82	0.72	—	9997	637	14	0	0	23	4901	logfile
✔	7TiK	25912	2023-04-19	2022-01-13	2.4	2.38	—	2.0	0.007	0.49	0.0	0.04	16.31	0.00	2.218	7.94	0.00	4.6	95.4	0.0	1.31	0.77	0.80	1.31	2.0	0.003	0.50	0.0	0.04	16.49	0.00	2.245	8.91	1.01	0.6	99.4	0.0	5.53	0.94	0.78	0.80	1.16	2565	339	6	0	0	0	0	logfile
✔	8D9K	27264	2023-04-20	2022-06-10	3.72	4.58	3.85	4.1	0.001	0.37	0.0	0.03	9.12	0.00	2.270	6.46	0.64	1.9	98.1	0.0	1.53	0.89	0.84	2.42	4.1	0.002	0.50	0.0	0.04	11.60	0.00	2.170	10.48	0.00	2.6	97.4	0.0	0.62	0.58	0.90	0.85	2.17	5708	546	3	65	0	0	0	logfile
✔	7VDF	31916	2023-04-26	2021-09-06	2.56	3.01	2.63	2.9	0.004	0.55	0.0	0.05	14.00	0.00	1.838	6.95	0.00	4.0	96.0	0.0	-0.05	0.60	0.80	4.50	2.9	0.003	0.50	0.0	0.04	16.18	0.00	1.982	7.91	0.63	3.7	96.3	0.0	-0.41	0.44	0.59	0.81	4.41	22692	1455	6	0	15	0	11043	logfile

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