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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6RVR | 10010 | 2022-12-20 | 2019-05-31 | 3.46 | 3.63 | — | 3.5 | 0.008 | 0.75 | 0.0 | 0.05 | 14.89 | 0.00 | 2.082 | 8.59 | 0.57 | 10.3 | 89.7 | 0.0 | -4.34 | 0.81 | 0.85 | 2.30 | 3.5 | 0.002 | 0.58 | 0.0 | 0.04 | 15.99 | 0.00 | 2.209 | 6.68 | 0.31 | 7.6 | 92.4 | 0.0 | -0.52 | 0.45 | 0.79 | 0.84 | 1.87 | 37716 | 4680 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QPi | 4614 | 2022-12-11 | 2019-02-14 | 3.3 | 3.37 | 2.73 | 3.4 | 0.005 | 0.70 | 0.0 | 0.04 | 6.59 | 0.01 | 2.432 | 2.09 | 0.00 | 1.4 | 98.6 | 0.0 | -3.02 | 0.39 | 0.62 | — | 3.3 | 0.002 | 0.44 | 0.0 | 0.04 | 4.28 | 0.00 | 2.462 | 1.49 | 0.00 | 2.8 | 97.2 | 0.0 | 2.25 | 1.20 | 0.40 | 0.62 | — | 2288 | 462 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6o0Z | 0585 | 2022-12-12 | 2019-02-17 | 3.3 | 3.94 | — | 3.6 | 0.006 | 0.72 | 0.0 | 0.04 | 16.28 | 0.00 | 2.302 | 2.58 | 0.27 | 6.3 | 93.7 | 0.0 | -4.11 | 0.86 | 0.88 | 3.46 | 3.6 | 0.002 | 0.52 | 0.0 | 0.03 | 16.62 | 0.00 | 2.157 | 4.96 | 0.14 | 5.7 | 94.3 | 0.0 | 0.16 | 0.32 | 0.85 | 0.88 | 3.28 | 11912 | 1288 | 4 | 135 | 0 | 0 | 0 | logfile |
✔ | 5A6F | 3063 | 2022-12-12 | 2015-06-25 | 4.2 | 5.75 | — | 5.0 | 0.012 | 1.50 | 0.0 | 0.05 | 12.32 | 0.01 | 2.112 | 10.08 | 3.74 | 12.2 | 87.6 | 0.2 | -4.94 | 0.56 | 0.74 | — | 4.7 | 0.002 | 0.57 | 0.0 | 0.04 | 10.94 | 0.00 | 2.010 | 10.19 | 0.00 | 5.1 | 94.9 | 0.0 | -1.00 | 0.99 | 0.57 | 0.75 | — | 8881 | 540 | 2 | 0 | 43 | 0 | 4330 | logfile |
✔ | 6oT2 | 20192 | 2022-12-16 | 2019-05-02 | 4.1 | 4.25 | 4.02 | 4.1 | 0.009 | 0.87 | 0.0 | 0.05 | 8.41 | 0.01 | 2.066 | 6.19 | 0.00 | 7.3 | 92.7 | 0.0 | -2.26 | 0.71 | 0.76 | — | 4.1 | 0.002 | 0.52 | 0.0 | 0.03 | 10.42 | 0.00 | 2.135 | 7.27 | 0.00 | 5.1 | 94.9 | 0.0 | 1.85 | 1.72 | 0.71 | 0.76 | — | 32311 | 2444 | 4 | 0 | 56 | 0 | 14975 | logfile |
✔ | 6PQP | 20450 | 2022-12-14 | 2019-07-09 | 3.06 | 3.46 | 3.03 | 3.4 | 0.012 | 1.29 | 0.0 | 0.23 | 17.05 | 0.01 | 2.132 | 8.99 | 0.19 | 4.3 | 95.7 | 0.0 | -3.28 | 0.74 | 0.82 | 3.00 | 3.4 | 0.002 | 0.57 | 0.0 | 0.04 | 16.68 | 0.00 | 2.157 | 6.67 | 0.05 | 2.8 | 97.2 | 0.0 | 1.87 | 2.26 | 0.74 | 0.85 | 2.21 | 20492 | 2460 | 12 | 0 | 36 | 0 | 0 | logfile |
✔ | 6CJU | 7484 | 2022-12-13 | 2018-02-26 | 3.35 | 3.50 | — | 3.4 | 0.011 | 1.50 | 0.0 | 0.07 | 15.93 | 0.01 | 2.277 | 6.56 | 1.49 | 7.3 | 92.7 | 0.0 | -4.12 | 0.69 | 0.83 | 2.94 | 3.4 | 0.002 | 0.68 | 0.0 | 0.04 | 16.72 | 0.00 | 2.194 | 7.79 | 0.00 | 5.6 | 94.4 | 0.0 | 0.77 | 0.63 | 0.70 | 0.84 | 2.29 | 13076 | 1560 | 8 | 0 | 36 | 0 | 0 | logfile |
✔ | 6CJT | 7483 | 2022-12-13 | 2018-02-26 | 3.46 | 3.58 | — | 3.5 | 0.014 | 1.44 | 0.0 | 0.07 | 13.62 | 0.01 | 2.280 | 5.85 | 0.59 | 7.4 | 92.6 | 0.0 | -3.58 | 0.72 | 0.84 | 2.63 | 3.5 | 0.002 | 0.71 | 0.0 | 0.04 | 13.49 | 0.00 | 2.207 | 8.02 | 0.29 | 5.7 | 94.3 | 0.0 | 1.56 | 1.31 | 0.73 | 0.86 | 1.39 | 13208 | 1584 | 8 | 0 | 28 | 0 | 0 | logfile |
✔ | 6oGZ | 20060 | 2022-12-15 | 2019-04-03 | 3.6 | 3.85 | — | 3.8 | 0.008 | 0.90 | 0.0 | 0.06 | 15.78 | 0.01 | 2.244 | 5.41 | 0.17 | 4.2 | 95.8 | 0.0 | -5.51 | 0.47 | 0.86 | 2.42 | 3.8 | 0.002 | 0.58 | 0.0 | 0.04 | 17.31 | 0.00 | 2.010 | 8.88 | 0.50 | 2.8 | 97.2 | 0.0 | -1.76 | 1.43 | 0.45 | 0.85 | 1.67 | 74962 | 9081 | 14 | 35 | 2 | 0 | 0 | logfile |
✔ | 6PUo | 20478 | 2022-12-20 | 2019-07-18 | 3.3 | 3.94 | — | 3.6 | 0.007 | 0.90 | 0.0 | 0.05 | 13.53 | 0.01 | 2.305 | 5.35 | 0.35 | 7.4 | 92.5 | 0.2 | -3.47 | 0.74 | 0.80 | 2.49 | 3.5 | 0.002 | 0.63 | 0.0 | 0.04 | 14.16 | 0.00 | 2.223 | 7.26 | 0.29 | 6.1 | 93.8 | 0.1 | 0.30 | 1.07 | 0.77 | 0.86 | 2.40 | 37804 | 5208 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6P9X | 20277 | 2022-12-11 | 2019-06-10 | 2.91 | 3.05 | 2.91 | 3.1 | 0.004 | 0.57 | 0.0 | 0.04 | 12.46 | 0.00 | 2.211 | 5.77 | 0.23 | 2.1 | 97.9 | 0.0 | -3.97 | 0.64 | 0.82 | 4.18 | 3.1 | 0.002 | 0.55 | 0.0 | 0.04 | 15.58 | 0.00 | 2.223 | 7.50 | 1.94 | 2.7 | 97.3 | 0.0 | 0.74 | 0.47 | 0.66 | 0.84 | 3.28 | 8177 | 1015 | 9 | 0 | 0 | 17 | 0 | logfile |
✔ | 6oFJ | 20047 | 2022-12-12 | 2019-03-30 | 4.5 | 5.60 | 3.27 | 7.8 | 0.007 | 0.96 | 0.0 | 0.05 | 15.74 | 0.01 | 2.135 | 3.88 | 0.00 | 7.1 | 92.9 | 0.0 | -4.36 | 0.48 | 0.33 | — | 7.8 | 0.002 | 0.60 | 0.0 | 0.04 | 14.08 | 0.00 | 1.999 | 8.93 | 0.00 | 10.1 | 89.9 | 0.0 | -2.15 | 1.20 | 0.56 | 0.54 | — | 10310 | 650 | 2 | 0 | 0 | 0 | 5142 | logfile |
✔ | 6DMR | 7965 | 2022-12-14 | 2018-06-05 | 3.9 | 4.25 | — | 4.2 | 0.005 | 0.91 | 0.0 | 0.05 | 10.34 | 0.01 | 2.280 | 3.77 | 0.00 | 4.2 | 95.8 | 0.0 | -4.22 | 0.62 | 0.70 | 1.82 | 4.1 | 0.002 | 0.62 | 0.0 | 0.04 | 14.97 | 0.00 | 2.278 | 6.88 | 0.10 | 3.1 | 96.9 | 0.0 | -0.45 | 1.74 | 0.75 | 0.87 | 1.48 | 19412 | 2424 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6i26 | 0328 | 2022-12-14 | 2018-10-31 | 4.3 | 4.37 | — | 4.2 | 0.005 | 0.89 | 0.0 | 0.05 | 8.22 | 0.01 | 0.411 | 6.12 | 0.50 | 6.4 | 93.3 | 0.3 | -6.25 | 0.75 | 0.60 | — | 4.2 | 0.002 | 0.67 | 0.0 | 0.04 | 10.66 | 0.00 | 2.210 | 5.49 | 0.07 | 5.9 | 94.1 | 0.0 | 0.04 | 0.98 | 0.84 | 0.77 | — | 22765 | 3366 | 1 | 0 | 221 | 0 | 0 | logfile |
✔ | 6MHQ | 9116 | 2022-12-16 | 2018-09-18 | 3.4 | 3.50 | — | 3.5 | 0.018 | 0.80 | 0.0 | 0.08 | 12.18 | 0.00 | 2.210 | 6.75 | 3.14 | 5.8 | 94.2 | 0.0 | -1.67 | 0.73 | 0.83 | 2.60 | 3.5 | 0.002 | 0.49 | 0.0 | 0.04 | 15.39 | 0.00 | 2.088 | 11.34 | 0.84 | 5.0 | 95.0 | 0.0 | 2.21 | 1.06 | 0.72 | 0.86 | 2.42 | 32640 | 2124 | 12 | 0 | 0 | 0 | 15264 | logfile |
✔ | 6Si8 | 10208 | 2022-12-15 | 2019-08-09 | 3.4 | 3.84 | — | 3.8 | 0.010 | 1.11 | 0.0 | 0.07 | 14.59 | 0.01 | 2.250 | 4.09 | 2.45 | 8.3 | 91.3 | 0.4 | -3.81 | 0.70 | 0.76 | 3.61 | 3.8 | 0.002 | 0.62 | 0.0 | 0.04 | 15.10 | 0.00 | 1.980 | 6.64 | 0.42 | 3.5 | 96.5 | 0.1 | -0.90 | 0.84 | 0.73 | 0.81 | 3.40 | 26542 | 1700 | 8 | 0 | 4 | 0 | 13086 | logfile |
✔ | 6N2P | 9332 | 2022-12-13 | 2018-11-13 | 4.0 | 4.78 | — | 4.2 | 0.009 | 0.87 | 0.0 | 0.04 | 7.86 | 0.01 | 2.203 | 7.41 | 0.00 | 12.8 | 87.2 | 0.0 | -4.67 | 0.58 | 0.72 | — | 4.2 | 0.002 | 0.62 | 0.0 | 0.04 | 10.81 | 0.00 | 2.162 | 7.00 | 0.00 | 8.6 | 91.4 | 0.0 | 0.39 | 1.38 | 0.59 | 0.82 | — | 14570 | 880 | 10 | 0 | 0 | 0 | 7380 | logfile |
✔ | 6NT5 | 0502 | 2022-12-11 | 2019-01-28 | 4.1 | 4.28 | — | 4.1 | 0.006 | 0.93 | 0.0 | 0.05 | 10.32 | 0.01 | 2.300 | 3.81 | 0.41 | 4.7 | 95.3 | 0.0 | -2.40 | 0.73 | 0.82 | — | 4.1 | 0.002 | 0.57 | 0.0 | 0.04 | 12.52 | 0.00 | 2.325 | 7.08 | 0.00 | 2.0 | 98.0 | 0.0 | 1.95 | 1.16 | 0.73 | 0.81 | — | 4586 | 584 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6U88 | 20682 | 2022-12-14 | 2019-09-04 | 3.2 | 3.34 | 3.28 | 3.3 | 0.009 | 1.05 | 0.0 | 0.06 | 15.82 | 0.01 | 2.328 | 4.30 | 0.74 | 3.2 | 96.8 | 0.0 | -4.92 | 0.68 | 0.82 | 2.57 | 3.3 | 0.002 | 0.55 | 0.0 | 0.04 | 16.69 | 0.00 | 2.149 | 7.48 | 0.14 | 1.4 | 98.6 | 0.0 | 0.80 | 1.60 | 0.69 | 0.84 | 2.64 | 20004 | 2444 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 6E7Y | 9001 | 2022-12-13 | 2018-07-27 | 3.57 | 3.68 | — | 3.7 | 0.005 | 0.81 | 0.0 | 0.05 | 10.18 | 0.01 | 2.364 | 2.19 | 0.00 | 7.1 | 92.9 | 0.0 | -5.91 | 0.63 | 0.80 | 2.96 | 3.7 | 0.002 | 0.68 | 0.0 | 0.04 | 14.29 | 0.00 | 2.317 | 6.14 | 0.47 | 4.8 | 95.2 | 0.0 | -0.54 | 1.34 | 0.63 | 0.82 | 2.62 | 15508 | 1900 | 8 | 0 | 4 | 0 | 0 | logfile |