Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XKQ	33264	2023-04-27	2022-04-20	3.3	3.61	3.27	3.3	0.003	0.50	0.0	0.04	13.48	0.00	1.967	4.96	0.00	2.0	98.0	0.0	1.22	0.86	0.89	2.81	3.3	0.002	0.48	0.0	0.04	14.84	0.00	1.983	6.06	0.11	2.2	97.8	0.0	1.46	0.40	0.87	0.91	2.38	25299	3259	15	0	13	0	0	logfile
✔	6CUD	7620	2023-04-25	2018-03-25	3.3	3.61	—	3.5	0.007	1.13	0.0	0.06	12.64	0.02	2.171	6.98	1.47	4.4	95.5	0.1	-3.04	0.71	0.83	1.93	3.5	0.002	0.54	0.0	0.04	13.42	0.00	2.262	3.56	0.16	2.6	97.3	0.1	2.44	1.60	0.72	0.84	1.64	21028	2816	8	0	12	0	0	logfile
✔	7LKZ	23410	2023-04-23	2021-02-03	3.27	3.84	—	3.7	0.007	1.08	0.0	0.06	16.96	0.01	1.892	12.38	0.37	8.3	91.7	0.0	-1.26	0.74	0.83	1.92	3.7	0.002	0.59	0.0	0.04	17.35	0.00	2.012	7.55	0.55	5.6	94.4	0.0	0.14	1.11	0.75	0.84	1.60	15515	1920	4	0	26	0	0	logfile
✔	7ZW1	14991	2023-04-22	2022-05-17	3.7	4.52	3.66	3.9	0.002	0.50	0.0	0.03	17.28	0.00	2.021	7.62	0.16	3.1	96.9	0.0	3.09	0.65	0.80	1.73	3.9	0.002	0.49	0.0	0.03	17.41	0.00	2.023	8.73	0.16	2.9	97.1	0.0	3.13	0.70	0.65	0.80	1.48	11807	760	3	0	0	0	5883	logfile
✔	7ZH4	14721	2023-04-19	2022-04-05	2.49	2.65	2.46	2.6	0.005	0.88	0.0	0.04	14.07	0.00	2.231	4.63	0.00	2.3	97.7	0.0	-0.97	0.56	0.86	4.93	2.6	0.002	0.48	0.0	0.04	16.92	0.00	2.240	5.14	1.51	1.4	98.6	0.0	1.08	2.14	0.52	0.85	3.74	2957	362	4	0	2	39	0	logfile
✔	8AGB	15419	2023-04-24	2022-07-19	3.0	3.37	3.14	3.3	0.006	1.01	0.0	0.05	17.23	0.01	2.052	8.32	6.03	5.6	94.3	0.1	-3.13	0.74	0.88	3.36	3.3	0.002	0.63	0.0	0.04	16.91	0.00	2.096	6.68	3.13	3.8	96.2	0.0	0.43	0.56	0.71	0.88	3.38	17202	2073	17	0	33	0	0	logfile
✔	7Y42	33600	2023-04-26	2022-06-13	3.45	3.86	3.62	3.8	0.006	0.84	0.0	0.05	14.56	0.01	2.121	11.84	0.59	9.5	90.5	0.0	-3.02	0.77	0.81	2.57	3.8	0.002	0.57	0.0	0.04	15.94	0.00	2.182	7.93	0.16	4.8	95.2	0.0	-1.79	0.42	0.78	0.82	1.78	23058	2904	6	0	30	0	0	logfile
✔	7NVH	12604	2023-04-20	2021-03-15	3.0	3.23	3.00	3.2	0.006	0.73	0.0	0.05	14.27	0.01	2.145	7.79	0.69	5.6	94.4	0.0	-0.42	0.64	0.86	2.63	3.2	0.002	0.57	0.0	0.04	15.32	0.00	2.246	7.08	0.87	4.3	95.7	0.0	0.81	0.33	0.64	0.87	2.42	5528	717	1	0	1	0	0	logfile
✔	7TZF	26208	2023-04-21	2022-02-15	2.4	2.00	2.20	2.3	0.004	0.53	0.0	0.04	14.56	0.00	2.252	4.74	1.43	1.0	99.0	0.0	-2.36	0.54	0.77	4.70	2.0	0.002	0.55	0.0	0.04	16.89	0.00	2.212	5.33	1.72	1.7	98.3	0.0	0.92	0.83	0.56	0.82	4.60	10342	1272	13	0	19	25	0	logfile
✔	6RWL	10041	2023-04-24	2019-06-05	3.36	3.67	3.45	3.6	0.003	0.56	0.0	0.04	16.02	0.00	2.348	2.63	2.86	3.1	96.9	0.0	-3.04	0.70	0.83	2.24	3.6	0.002	0.52	0.0	0.04	18.83	0.00	2.273	5.54	0.23	3.1	96.9	0.0	1.24	1.54	0.71	0.85	2.06	18272	2076	24	86	8	0	0	logfile
✔	8EoT	28467	2023-04-27	2022-10-04	3.3	4.07	3.37	3.6	0.004	0.63	0.0	0.05	15.43	0.00	2.009	5.09	6.03	5.5	94.4	0.1	-1.47	0.85	0.84	2.24	3.6	0.002	0.55	0.0	0.04	16.16	0.00	2.006	5.87	0.08	4.7	95.3	0.1	-0.17	0.45	0.90	0.90	1.64	25299	3061	10	77	3	0	0	logfile
✔	7UXA	26856	2023-04-20	2022-05-05	3.28	3.56	3.32	3.5	0.003	0.58	0.0	0.04	11.95	0.00	2.084	7.47	0.88	5.2	94.8	0.0	-0.97	0.78	0.82	2.37	3.5	0.002	0.54	0.0	0.04	14.35	0.00	2.062	9.87	0.15	4.0	96.0	0.0	0.18	0.59	0.77	0.80	1.60	8120	820	5	78	2	0	0	logfile
✔	7XHT	33198	2023-04-20	2022-04-10	2.55	2.77	2.54	2.8	0.003	0.68	0.0	0.03	14.64	0.00	2.014	6.29	0.00	1.8	98.2	0.0	0.35	0.69	0.85	5.47	2.8	0.002	0.52	0.0	0.03	15.90	0.00	1.997	6.66	1.75	2.0	98.0	0.0	0.73	0.35	0.65	0.85	4.80	7839	395	6	220	3	0	0	logfile
✔	7XiX	33211	2023-04-27	2022-04-14	3.25	3.46	3.27	3.4	0.004	0.61	0.0	0.05	14.12	0.00	2.195	5.94	0.00	5.4	94.6	0.0	-1.30	0.76	0.81	2.84	3.4	0.002	0.56	0.0	0.05	15.50	0.00	2.168	5.82	0.14	5.5	94.5	0.0	-1.21	1.11	0.79	0.86	2.49	26586	3285	24	0	66	0	0	logfile
✔	8AMX	15528	2023-04-23	2022-08-04	2.55	2.79	2.59	2.7	0.004	0.63	0.0	0.04	11.93	0.01	2.414	2.40	0.00	2.4	97.2	0.3	2.10	0.64	0.86	3.96	2.7	0.002	0.54	0.0	0.04	15.11	0.00	2.281	3.58	0.63	3.2	96.4	0.3	3.03	0.26	0.66	0.88	3.00	15633	2024	16	0	0	57	0	logfile
✔	7SXR	25503	2023-04-27	2021-11-24	3.0	3.85	—	3.2	0.005	0.79	0.0	0.06	12.98	0.01	2.287	3.36	0.00	1.9	98.1	0.0	-0.27	0.87	0.84	2.71	3.2	0.002	0.52	0.0	0.04	14.21	0.00	2.195	6.29	0.33	1.8	98.2	0.0	0.87	0.53	0.87	0.87	2.40	25236	3120	24	0	60	0	0	logfile
✔	7SXX	25509	2023-04-28	2021-11-24	2.66	3.58	—	2.8	0.005	0.80	0.0	0.06	13.37	0.01	2.298	3.29	0.00	1.6	98.4	0.0	-0.02	0.83	0.84	2.36	2.9	0.002	0.56	0.0	0.04	14.71	0.00	2.140	8.16	0.55	2.2	97.8	0.0	1.08	1.17	0.83	0.85	2.47	26972	3318	26	0	62	0	0	logfile
✔	8A2U	15107	2023-04-23	2022-06-06	2.21	2.31	2.16	2.3	0.004	0.63	0.0	0.04	13.27	0.00	2.173	2.75	0.65	2.5	97.5	0.0	-1.41	0.72	0.86	6.31	2.3	0.002	0.59	0.0	0.04	16.64	0.00	2.155	3.93	0.52	1.3	98.7	0.0	1.13	1.06	0.73	0.88	6.00	15022	1830	15	0	15	512	0	logfile
✔	7oLA	12975	2023-04-25	2021-05-19	3.3	3.85	3.21	3.3	0.004	0.59	0.0	0.04	15.07	0.00	2.023	7.61	0.00	2.7	97.3	0.0	1.22	0.88	0.85	2.96	3.3	0.002	0.49	0.0	0.04	15.96	0.00	1.985	8.52	0.00	2.6	97.4	0.0	1.16	0.89	0.88	0.89	2.86	19719	2394	10	0	7	0	0	logfile
✔	7QTL	14144	2023-04-24	2022-01-14	2.48	2.85	2.48	2.5	0.007	0.66	0.0	0.04	17.25	0.01	1.988	8.61	3.98	2.4	97.6	0.0	-1.53	0.89	0.86	4.27	2.5	0.002	0.55	0.0	0.04	17.21	0.00	1.460	7.67	2.04	1.9	98.1	0.0	0.95	4.18	0.91	0.90	3.84	18397	2152	14	44	4	120	0	logfile

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