Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LH2	23334	2023-11-15	2021-01-21	3.43	4.01	—	3.9	0.003	0.56	0.0	0.04	13.18	0.00	2.030	7.06	0.18	2.7	97.3	0.0	0.96	0.66	0.82	1.96	3.9	0.002	0.58	0.0	0.04	14.82	0.00	2.194	7.15	0.35	2.8	97.2	0.0	1.50	0.79	0.68	0.86	2.24	10528	1360	4	0	4	0	0	logfile
✔	6TY9	20582	2023-11-16	2019-08-08	2.9	2.98	—	2.9	0.009	0.72	0.0	0.04	14.66	0.00	1.980	5.88	0.20	3.6	96.4	0.0	-4.19	0.60	0.88	4.04	2.9	0.002	0.53	0.0	0.04	16.40	0.00	2.015	5.53	2.42	2.6	97.4	0.0	0.30	0.50	0.56	0.89	3.19	14559	1709	6	38	5	0	0	logfile
✔	6UZY	20964	2023-11-16	2019-11-15	3.38	3.52	—	3.5	0.012	1.10	7.0	0.07	15.17	0.01	2.265	6.91	0.00	2.6	97.4	0.0	-3.44	0.66	0.82	2.53	3.5	0.002	0.49	0.0	0.04	15.47	0.00	2.300	5.77	0.00	2.2	97.8	0.0	1.87	0.33	0.61	0.81	1.85	16212	1946	14	0	21	0	0	logfile
✔	6TY8	20581	2023-11-16	2019-08-08	3.0	3.11	—	3.1	0.008	0.99	1.0	0.06	9.80	0.01	2.210	4.88	0.75	3.0	96.9	0.1	-3.24	0.57	0.86	3.98	3.1	0.002	0.54	0.0	0.04	15.93	0.00	2.102	4.84	2.44	1.8	98.2	0.0	0.38	1.69	0.58	0.89	3.22	13607	1694	3	0	1	0	0	logfile
✔	7PN1	13545	2023-11-15	2021-09-04	3.9	4.15	3.83	4.0	0.002	0.57	0.0	0.04	12.95	0.00	2.053	6.26	0.00	2.8	97.2	0.0	1.31	0.61	0.80	1.17	4.0	0.002	0.54	0.0	0.04	14.49	0.00	1.939	7.42	0.18	2.6	97.4	0.0	1.52	0.97	0.60	0.80	0.75	10384	657	1	0	0	0	5237	logfile
✔	7JGF	22325	2023-11-13	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.74	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.8	0.002	0.47	0.0	0.04	13.18	0.00	2.190	46.28	0.41	4.8	95.2	0.0	1.10	0.62	0.41	0.45	—	4477	532	1	0	0	0	30	logfile
✔	7ZRG	14913	2023-11-15	2022-05-04	3.5	3.19	3.44	3.3	0.004	0.78	0.0	0.05	16.02	0.01	2.291	6.53	0.00	4.5	95.5	0.0	-1.09	0.64	0.80	1.65	3.3	0.002	0.54	0.0	0.04	16.36	0.00	2.155	10.27	0.18	3.8	96.2	0.0	0.49	0.29	0.64	0.82	1.40	11032	1448	6	0	10	0	0	logfile
✔	7T38	25651	2023-11-17	2021-12-07	3.8	4.03	—	4.0	0.004	0.78	0.0	0.04	13.60	0.01	2.319	4.19	0.39	3.1	96.9	0.0	-1.24	0.68	0.81	1.54	4.0	0.002	0.55	0.0	0.04	15.45	0.00	2.262	6.56	0.44	4.0	96.0	0.0	1.62	1.56	0.70	0.83	1.38	19404	2432	4	0	0	0	0	logfile
✔	7ZGo	14709	2023-11-14	2022-04-04	2.55	2.04	2.53	2.6	0.008	1.24	0.0	0.06	16.84	0.00	2.170	9.40	0.00	3.4	96.6	0.0	1.35	0.50	0.76	3.14	2.6	0.002	0.50	0.0	0.04	16.48	0.00	2.254	8.96	0.52	3.1	96.9	0.0	2.18	1.09	0.53	0.79	3.51	7754	940	6	0	21	24	0	logfile
✔	7MQR	23950	2023-11-16	2021-05-06	4.1	4.43	4.11	4.2	0.007	1.32	0.0	0.07	14.72	0.01	2.382	3.72	0.60	9.7	89.9	0.3	-3.42	0.85	0.80	—	4.2	0.002	0.63	0.0	0.04	13.96	0.00	2.239	9.80	0.00	7.1	92.7	0.2	-1.15	0.47	0.85	0.82	—	14878	1810	12	0	20	0	0	logfile
✔	7WE4	32439	2023-11-14	2021-12-22	2.7	3.09	—	3.1	0.012	1.59	4.0	0.09	16.97	0.02	2.238	17.86	0.31	5.3	94.2	0.5	-0.28	0.67	0.81	2.61	3.1	0.002	0.60	0.0	0.04	16.57	0.00	2.187	6.90	0.61	3.8	96.2	0.0	1.69	2.23	0.60	0.82	2.47	9806	1122	4	0	29	0	0	logfile
✔	7XBD	33103	2023-11-14	2022-03-21	3.11	3.35	3.12	3.4	0.003	0.53	0.0	0.04	14.05	0.00	2.201	6.38	0.00	4.8	95.2	0.0	-1.80	0.61	0.73	2.27	3.4	0.002	0.55	0.0	0.04	15.91	0.00	2.176	6.72	0.31	4.2	95.8	0.0	-0.61	0.37	0.58	0.73	1.79	8981	1153	6	0	0	0	0	logfile
✔	7UZV	26919	2023-11-14	2022-05-09	2.5	2.29	2.44	2.3	0.003	0.58	0.0	0.04	19.05	0.00	1.944	3.69	2.84	1.4	98.3	0.3	1.78	0.62	0.84	3.61	2.3	0.002	0.54	0.0	0.04	19.13	0.00	1.943	5.32	3.25	1.6	98.3	0.2	1.37	0.25	0.61	0.85	3.77	9274	584	4	0	0	63	4592	logfile
✔	7RJT	24490	2023-11-20	2021-07-21	2.93	3.41	—	3.3	0.005	0.59	0.0	0.04	14.12	0.00	2.251	4.92	0.00	2.6	97.4	0.0	0.61	0.75	0.80	2.98	3.3	0.002	0.46	0.0	0.04	15.10	0.00	2.288	4.90	0.83	2.3	97.7	0.0	0.75	0.34	0.77	0.83	2.50	28972	3608	12	0	28	24	0	logfile
✔	7S8o	24899	2023-11-14	2021-09-18	2.58	2.12	2.59	1.9	0.007	0.72	0.0	0.05	13.18	0.00	2.102	3.18	0.00	5.8	94.2	0.0	0.31	0.81	0.80	4.50	1.9	0.002	0.53	0.0	0.04	15.63	0.00	2.207	3.18	0.92	4.4	95.6	0.0	1.05	0.40	0.83	0.83	3.24	8331	1101	6	0	1	0	0	logfile
✔	7UPi	26667	2023-11-14	2022-04-15	2.89	3.71	2.90	3.2	0.002	0.55	0.0	0.04	9.09	0.00	1.843	2.56	0.00	1.9	98.1	0.0	-0.12	0.91	0.87	3.97	3.2	0.002	0.56	0.0	0.04	10.89	0.00	2.006	4.22	0.11	2.1	97.9	0.0	-0.22	2.21	0.90	0.89	3.98	7775	972	5	0	5	0	0	logfile
✔	5A6F	3063	2023-11-14	2015-06-25	4.2	5.75	—	5.0	0.012	1.50	0.0	0.05	12.32	0.01	2.112	10.08	3.74	12.2	87.6	0.2	-4.94	0.56	0.74	—	4.9	0.002	0.56	0.0	0.04	10.89	0.00	2.048	8.96	0.00	4.7	95.3	0.0	-0.78	0.97	0.57	0.75	—	8881	540	2	0	43	0	4330	logfile
✔	6o2o	0610	2023-11-18	2019-02-24	4.53	4.47	—	4.3	0.006	1.00	1.0	0.06	14.75	0.01	2.191	7.84	0.42	11.2	88.8	0.0	-4.31	0.78	0.80	—	4.3	0.002	0.64	0.0	0.04	13.58	0.00	2.049	11.13	0.02	8.7	91.3	0.0	-2.58	0.59	0.77	0.79	—	72637	9218	14	0	0	0	0	logfile
✔	7WiT	32535	2023-11-14	2022-01-04	3.21	3.87	3.47	3.8	0.005	0.57	0.0	0.04	10.80	0.00	2.271	4.78	3.11	3.3	96.7	0.0	-0.91	0.61	0.77	2.46	3.8	0.002	0.51	0.0	0.04	13.61	0.00	2.200	4.97	0.68	1.9	98.1	0.0	1.83	0.65	0.61	0.79	1.39	8109	1133	1	0	2	0	0	logfile
✔	7XQ9	33391	2023-11-17	2022-05-07	3.3	3.62	3.55	3.8	0.005	0.83	0.0	0.06	14.70	0.01	2.253	1.72	3.89	3.6	96.4	0.0	-2.05	0.52	0.82	2.74	3.8	0.002	0.51	0.0	0.03	15.61	0.00	2.205	4.12	0.14	2.2	97.8	0.0	3.52	0.53	0.54	0.83	2.53	19632	2412	12	0	0	0	0	logfile

• ← previous
• Page 2 of 528
• next →