Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7K0M	22602	2021-06-02	2020-09-04	2.9	3.38	—	3.3	0.005	0.74	0.0	0.04	13.68	0.00	2.218	4.67	0.00	2.3	97.7	0.0	1.05	0.62	0.79	3.49	3.3	0.002	0.45	0.0	0.04	15.15	0.00	2.208	5.29	0.93	1.7	98.3	0.0	1.50	0.40	0.63	0.80	2.92	18578	2342	14	0	16	0	0	logfile
✔	7KFZ	22857	2021-06-01	2020-10-15	3.47	4.45	3.43	3.9	0.012	0.76	0.0	0.05	13.43	0.00	1.897	8.91	0.00	3.8	96.2	0.0	-1.10	0.86	0.78	2.74	3.9	0.002	0.52	0.0	0.04	14.25	0.00	2.029	7.69	0.00	1.5	98.5	0.0	2.52	0.54	0.93	0.88	2.60	6592	803	3	0	2	0	0	logfile
✔	7LYQ	23599	2021-06-03	2021-03-07	3.34	3.59	—	3.6	0.013	1.74	3.0	0.09	12.49	0.02	2.256	0.39	0.55	5.8	93.7	0.4	-0.90	0.75	0.78	3.40	3.6	0.002	0.57	0.0	0.04	14.10	0.00	2.161	5.16	0.08	3.1	96.9	0.0	0.72	0.69	0.79	0.85	2.42	23642	2985	6	0	38	0	0	logfile
✔	7BPA	30149	2021-06-04	2020-03-21	3.3	3.57	—	3.5	0.008	1.21	0.0	0.07	13.81	0.01	2.169	3.85	0.03	5.8	94.2	0.0	-3.01	0.75	0.83	2.37	3.5	0.002	0.61	0.0	0.04	15.30	0.00	2.152	6.02	0.18	2.6	97.4	0.0	0.00	1.18	0.77	0.84	2.08	35370	4452	12	0	12	0	0	logfile
✔	7AWA	11928	2021-06-01	2020-11-06	3.5	3.83	—	3.6	0.003	0.64	0.0	0.04	14.22	0.00	2.126	6.58	0.00	5.8	94.2	0.0	-2.52	0.57	0.81	2.14	3.7	0.002	0.53	0.0	0.04	15.02	0.00	2.161	7.15	0.00	3.7	96.3	0.0	-0.81	1.62	0.55	0.81	1.37	5310	328	1	0	0	0	2703	logfile
✔	7LUV	23527	2021-06-02	2021-02-23	3.7	4.02	—	3.6	0.007	0.80	0.0	0.05	9.84	0.00	2.050	10.73	0.05	9.6	90.1	0.3	-4.47	0.76	0.79	2.90	3.6	0.002	0.61	0.0	0.04	13.62	0.00	2.205	6.90	0.10	4.9	95.1	0.0	0.59	0.92	0.77	0.82	1.80	18773	2168	6	0	210	0	0	logfile
✔	7C98	30308	2021-06-01	2020-06-05	3.47	3.58	—	3.6	0.007	0.91	0.0	0.05	17.05	0.01	1.906	9.01	0.00	7.4	92.6	0.0	-4.56	0.50	0.82	2.43	3.5	0.002	0.64	0.0	0.04	18.70	0.00	2.150	9.41	0.40	5.7	94.3	0.0	-1.11	1.11	0.50	0.83	1.92	7656	927	8	18	6	0	0	logfile
✔	7KRP	23009	2021-06-02	2020-11-20	3.2	3.57	—	3.6	0.017	0.74	0.0	0.15	12.56	0.00	1.784	6.12	4.18	2.9	97.1	0.0	-1.51	0.65	0.64	0.61	3.5	0.002	0.55	0.0	0.04	14.92	0.00	1.992	9.19	0.25	2.7	97.3	0.0	0.01	1.69	0.76	0.83	2.32	12561	1373	8	73	7	0	0	logfile
✔	6ZH8	11216	2021-06-03	2020-06-21	4.14	6.50	4.33	4.2	0.005	0.77	0.0	0.04	15.29	0.00	2.198	27.27	0.03	10.6	89.3	0.0	-1.45	0.91	0.85	—	4.2	0.002	0.65	0.0	0.04	15.30	0.00	2.144	14.31	0.00	6.8	93.2	0.0	0.35	1.14	0.90	0.84	—	29506	3668	3	19	26	0	0	logfile
✔	7NSC	12564	2021-06-01	2021-03-05	3.3	3.46	3.32	3.4	0.005	0.71	0.0	0.04	14.50	0.00	1.732	9.71	0.10	8.3	91.7	0.0	-1.46	0.77	0.81	2.53	3.5	0.002	0.58	0.0	0.04	16.19	0.00	2.162	8.23	0.42	6.9	93.1	0.0	-0.03	0.90	0.77	0.81	1.76	9327	1230	4	0	0	0	0	logfile
✔	7BH9	12187	2021-06-01	2021-01-11	2.9	3.58	2.91	3.4	0.007	0.76	0.0	0.05	13.23	0.00	2.021	5.17	0.33	4.9	95.1	0.0	-3.10	0.85	0.88	3.70	3.5	0.002	0.52	0.0	0.04	15.07	0.00	2.185	4.03	0.66	1.4	98.6	0.0	0.85	0.69	0.82	0.85	2.47	5876	730	3	0	4	0	0	logfile
✔	7C99	30309	2021-06-01	2020-06-05	3.36	3.44	—	3.5	0.006	0.89	0.0	0.05	16.02	0.00	1.776	9.93	0.00	6.0	94.0	0.0	-5.91	0.50	0.85	3.07	3.5	0.002	0.58	0.0	0.04	18.00	0.00	2.183	5.99	0.13	5.6	94.4	0.0	-2.54	2.17	0.51	0.86	2.83	7656	927	8	18	6	0	0	logfile
✔	6URT	20862	2021-06-02	2019-10-24	3.27	4.11	—	3.7	0.008	1.36	1.0	0.06	18.28	0.01	2.285	7.74	3.41	9.0	91.0	0.0	-4.88	0.73	0.83	2.80	3.7	0.002	0.68	0.0	0.04	15.81	0.00	2.230	10.16	0.11	6.1	93.9	0.0	-0.04	1.07	0.76	0.87	2.59	18263	2317	14	0	7	0	0	logfile
✔	7KS9	23016	2021-06-03	2020-11-21	4.75	5.64	4.96	4.9	0.004	0.77	0.0	0.05	11.71	0.01	2.222	3.55	0.07	1.9	98.1	0.0	-0.64	0.82	0.74	—	4.8	0.002	0.61	0.0	0.04	12.05	0.00	2.121	10.31	0.00	3.2	96.8	0.0	0.05	1.35	0.84	0.80	—	25380	3189	20	0	59	0	0	logfile
✔	6YW5	10958	2021-06-06	2020-04-29	2.85	2.95	2.83	2.9	0.002	0.37	0.0	0.03	10.00	0.00	1.841	2.48	0.14	1.6	98.4	0.0	-2.99	0.73	0.86	5.10	2.9	0.002	0.50	0.0	0.03	14.07	0.00	1.906	4.32	0.69	2.3	97.7	0.0	1.35	0.64	0.73	0.88	3.94	167548	7528	47	1435	120	0	76656	logfile
✔	7CN0	30412	2021-06-01	2020-07-29	3.9	3.96	—	3.9	0.004	0.62	0.0	0.04	13.32	0.00	1.843	14.90	0.00	8.1	91.9	0.0	-2.90	0.55	0.77	2.36	3.9	0.002	0.60	0.0	0.04	15.75	0.00	2.277	10.19	0.46	5.7	94.3	0.0	0.82	0.55	0.55	0.77	0.50	6602	884	5	0	2	0	0	logfile
✔	7JFo	22308	2021-06-04	2020-07-17	2.13	2.12	—	2.1	0.022	1.67	2.0	0.11	12.07	0.01	2.198	6.67	1.23	3.9	96.1	0.0	-0.96	0.72	0.77	6.96	2.1	0.002	0.58	0.0	0.04	14.43	0.00	2.193	6.77	1.00	2.0	98.0	0.0	1.44	0.79	0.70	0.75	5.59	38958	4832	40	0	0	1198	0	logfile
✔	7K0P	22606	2021-06-02	2020-09-04	3.1	3.68	—	3.6	0.006	0.77	0.0	0.04	14.41	0.00	2.183	5.21	0.00	2.5	97.5	0.0	0.92	0.69	0.82	3.20	3.6	0.002	0.48	0.0	0.04	15.17	0.00	2.165	5.19	0.21	2.0	98.0	0.0	1.57	0.31	0.68	0.82	2.59	18572	2342	14	0	15	0	0	logfile
✔	6ZBJ	11156	2021-06-04	2020-06-08	3.3	4.20	3.47	3.8	0.011	1.04	0.0	0.06	14.14	0.01	2.351	1.38	0.00	0.7	99.3	0.0	-1.34	0.87	0.81	1.60	3.8	0.002	0.49	0.0	0.03	15.38	0.00	2.080	3.57	0.00	0.5	99.5	0.0	3.97	1.36	0.88	0.83	1.31	39212	2334	4	0	0	0	19864	logfile
✔	6ZBL	11157	2021-06-04	2020-06-08	3.6	4.39	3.70	4.0	0.014	1.20	0.0	0.07	14.69	0.01	2.400	1.54	0.00	0.7	99.3	0.0	-0.56	0.87	0.79	1.33	4.0	0.002	0.49	0.0	0.03	15.72	0.00	2.168	4.27	0.00	1.0	99.0	0.0	4.21	1.77	0.88	0.82	0.92	39074	2326	4	0	0	0	19788	logfile

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