Table showing results for March 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6DMR	7965	2021-03-21	2018-06-05	3.9	4.25	—	4.2	0.005	0.91	0.0	0.05	10.34	0.01	2.280	3.54	0.00	4.2	95.8	0.0	-4.22	0.62	0.70	1.82	4.1	0.002	0.60	0.0	0.04	12.53	0.00	2.271	5.67	0.14	3.6	96.4	0.0	-0.28	1.75	0.75	0.86	1.39	19412	2424	4	0	0	0	0	logfile
✔	6P5J	20256	2021-03-31	2019-05-30	3.1	3.21	3.52	3.2	0.010	1.34	1.0	0.10	17.13	0.00	2.213	2.59	2.19	9.4	90.0	0.5	-4.21	0.62	0.71	1.96	3.2	0.002	0.56	0.0	0.03	16.54	0.01	2.062	12.32	0.07	5.0	95.0	0.0	-1.77	1.41	0.66	0.69	1.64	215969	11490	81	5766	0	0	0	logfile
✔	6S5T	10100	2021-03-20	2019-07-02	4.15	4.28	4.17	4.2	0.007	1.49	3.0	0.09	17.17	0.00	2.450	4.93	3.93	7.1	92.4	0.6	-4.05	0.75	0.84	—	4.2	0.002	0.60	0.0	0.04	14.80	0.00	2.214	8.61	0.14	2.8	97.2	0.0	-0.09	1.16	0.75	0.80	—	6958	896	3	0	1	0	0	logfile
✔	6NSJ	0498	2021-03-20	2019-01-24	2.7	3.69	2.67	3.6	0.007	1.12	0.0	0.06	13.83	0.01	2.340	8.25	2.18	6.0	94.0	0.0	-4.40	0.61	0.75	5.00	3.6	0.002	0.62	0.0	0.04	11.79	0.00	2.235	6.35	0.00	4.5	95.5	0.0	1.79	0.58	0.60	0.76	3.19	9096	1092	12	0	18	0	0	logfile
✔	6NPH	0470	2021-03-20	2019-01-17	2.9	3.11	—	3.2	0.009	1.40	0.0	0.06	19.69	0.01	2.292	5.09	4.67	7.9	92.1	0.0	-4.29	0.53	0.71	1.66	3.2	0.002	0.87	0.0	0.04	14.05	0.00	2.217	7.05	0.00	6.0	94.0	0.0	0.30	0.95	0.60	0.82	3.20	7504	944	4	0	13	0	0	logfile
✔	6GYN	0093	2021-03-21	2018-06-30	3.4	3.66	3.52	3.6	0.008	0.85	0.0	0.05	9.32	0.01	2.273	3.08	0.00	4.7	95.3	0.0	-2.56	0.66	0.83	3.51	3.6	0.002	0.52	0.0	0.04	11.79	0.00	2.202	6.52	0.00	3.3	96.7	0.0	2.73	0.50	0.66	0.83	2.80	16932	1980	8	0	36	0	0	logfile
✔	6N26	9324	2021-03-20	2018-11-12	3.0	3.29	—	3.2	0.008	0.83	0.0	0.05	9.20	0.01	2.277	2.55	0.00	3.2	96.8	0.0	-6.12	0.72	0.83	4.16	3.2	0.002	0.59	0.0	0.04	12.47	0.00	2.211	6.54	0.00	1.4	98.6	0.0	0.77	0.74	0.71	0.82	2.82	13190	1595	5	0	0	0	0	logfile
✔	6UGE	20762	2021-03-21	2019-09-26	3.6	4.02	—	3.9	0.008	1.07	0.0	0.05	14.24	0.01	2.060	3.39	0.23	6.4	93.6	0.1	-4.80	0.71	0.69	1.89	3.9	0.002	0.54	0.0	0.04	13.81	0.00	2.068	4.79	0.00	3.7	96.3	0.0	-0.58	0.54	0.78	0.82	1.57	13876	1862	12	0	9	0	0	logfile
✔	6P18	20233	2021-03-22	2019-05-19	3.5	3.72	—	3.7	0.003	0.76	0.0	0.05	17.16	0.01	2.110	4.26	0.28	4.4	95.6	0.0	-3.80	0.80	0.80	1.80	3.7	0.002	0.57	0.0	0.04	16.69	0.00	2.006	9.48	0.00	3.6	96.4	0.0	-0.01	1.21	0.79	0.78	1.61	32673	3826	12	123	3	0	0	logfile
✔	6JND	9848	2021-03-20	2019-03-14	3.9	3.92	—	3.9	0.006	0.82	0.0	0.05	15.63	0.01	2.316	3.79	11.73	5.8	94.2	0.0	-5.73	0.43	0.77	1.85	3.9	0.002	0.59	0.0	0.04	13.34	0.00	2.316	5.61	0.00	2.6	97.4	0.0	-0.52	1.53	0.47	0.85	1.97	3294	419	1	0	1	0	0	logfile
✔	6RKV	4912	2021-03-21	2019-04-30	4.6	4.86	—	4.5	0.002	0.53	0.0	0.04	12.80	0.00	2.207	7.23	0.00	5.3	94.7	0.0	-1.73	0.87	0.80	—	4.5	0.002	0.60	0.0	0.04	14.85	0.00	2.156	10.29	0.00	5.3	94.7	0.0	0.35	1.32	0.88	0.82	—	15460	1784	8	64	0	0	0	logfile
✔	6GY6	0088	2021-03-20	2018-06-28	4.0	3.98	—	3.8	0.006	0.88	0.0	0.05	10.55	0.01	2.234	4.84	1.08	2.6	97.4	0.0	-4.40	0.90	0.84	—	3.8	0.002	0.58	0.0	0.04	12.76	0.00	2.086	9.33	0.02	1.8	98.2	0.0	2.89	1.45	0.90	0.85	—	72462	9139	26	0	0	0	0	logfile
✔	6SXA	10337	2021-03-20	2019-09-25	3.6	5.82	4.21	4.6	0.010	1.37	5.0	0.09	15.20	0.01	2.245	14.89	3.18	10.9	88.9	0.2	-4.66	0.83	0.67	-0.05	4.6	0.002	0.69	0.0	0.04	12.73	0.00	2.226	7.81	0.00	5.0	94.9	0.1	0.05	2.99	0.90	0.82	0.72	7014	943	2	0	0	0	0	logfile
✔	6N9X	0382	2021-03-21	2018-12-04	4.1	4.18	—	4.1	0.006	0.84	0.0	0.05	13.69	0.02	2.131	3.65	0.60	3.9	96.1	0.0	-4.04	0.74	0.78	—	4.1	0.002	0.60	0.0	0.04	14.47	0.00	2.045	6.82	0.00	2.3	97.7	0.0	-0.58	1.32	0.77	0.79	—	19658	2419	14	31	12	0	0	logfile
✔	6TJo	10512	2021-03-20	2019-11-26	3.2	3.43	2.57	3.5	0.013	1.18	0.0	0.07	9.67	0.01	2.394	2.20	0.00	12.7	87.3	0.0	-4.63	0.36	0.76	4.64	3.5	0.002	0.66	0.0	0.05	11.70	0.00	2.233	4.61	0.00	5.1	94.9	0.0	-3.54	1.43	0.43	0.78	3.93	2439	321	3	0	0	0	0	logfile
✔	6QJM	4564	2021-03-20	2019-01-24	3.3	3.49	1.95	3.4	0.010	1.01	0.0	0.07	8.06	0.01	2.408	6.17	0.00	9.1	90.9	0.0	-2.36	0.38	0.76	3.31	3.5	0.002	0.52	0.0	0.05	10.94	0.00	2.158	5.61	0.00	3.0	97.0	0.0	-2.24	1.59	0.31	0.71	4.00	846	111	3	0	0	0	0	logfile
✔	6C9i	7436	2021-03-21	2018-01-26	3.09	3.21	—	3.2	0.029	1.48	0.0	0.12	9.22	0.01	2.417	0.75	0.00	0.3	99.6	0.1	2.36	0.79	0.85	4.97	3.2	0.002	0.41	0.0	0.04	13.78	0.00	2.262	5.92	0.00	0.0	100.0	0.0	3.75	2.43	0.73	0.87	3.83	23700	3087	24	0	0	0	0	logfile
✔	6o84	0650	2021-03-20	2019-03-08	3.92	4.04	—	4.0	0.005	0.84	0.0	0.05	14.01	0.00	2.350	2.97	0.64	4.9	95.1	0.0	-5.68	0.60	0.82	2.21	4.0	0.002	0.61	0.0	0.04	13.57	0.00	2.173	8.49	0.00	5.2	94.8	0.0	1.57	1.36	0.59	0.79	2.81	6224	712	2	0	118	0	0	logfile
✔	6PWN	20508	2021-03-21	2019-07-23	3.1	3.65	2.95	3.4	0.006	0.90	0.0	0.04	15.74	0.00	2.276	8.60	0.44	3.5	96.5	0.0	-2.16	0.80	0.84	2.55	3.4	0.002	0.56	0.0	0.04	13.82	0.00	2.192	7.53	0.00	2.4	97.6	0.0	1.26	1.23	0.80	0.83	2.23	15379	1960	14	0	14	0	0	logfile
✔	6oiT	20081	2021-03-20	2019-04-09	3.5	3.59	—	3.6	0.006	1.02	0.0	0.06	11.44	0.01	2.233	5.29	0.45	3.9	96.1	0.0	-2.34	0.74	0.77	2.58	3.5	0.002	0.57	0.0	0.04	13.02	0.00	2.200	7.11	0.08	2.3	97.7	0.0	2.06	0.68	0.74	0.76	2.19	12085	1536	7	0	0	0	0	logfile

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