Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PXW	20523	2022-07-03	2019-07-28	3.1	3.31	—	3.3	0.008	0.99	0.0	0.06	9.83	0.01	2.254	4.99	0.16	9.9	89.6	0.5	-4.04	0.76	0.82	4.11	3.3	0.002	0.56	0.0	0.04	13.59	0.00	2.214	5.09	0.16	7.3	92.7	0.0	-1.95	0.79	0.75	0.83	3.24	11198	1386	6	0	0	0	0	logfile
✔	6S6X	10108	2022-07-06	2019-07-03	3.5	3.64	3.54	3.6	0.023	0.99	0.0	0.13	14.05	0.00	2.111	6.90	0.04	4.2	95.8	0.0	-2.91	0.76	0.85	1.81	3.6	0.002	0.84	0.0	0.05	15.60	0.00	1.788	6.09	0.16	2.8	97.2	0.0	-0.13	1.55	0.77	0.86	1.78	90342	11664	24	0	30	0	0	logfile
✔	6CUD	7620	2022-07-04	2018-03-25	3.3	3.61	—	3.5	0.007	1.13	0.0	0.06	12.63	0.02	2.171	6.98	1.47	4.4	95.5	0.1	-3.04	0.71	0.83	1.93	3.5	0.002	0.55	0.0	0.04	13.46	0.00	2.265	3.15	0.16	3.2	96.7	0.1	2.37	1.60	0.72	0.85	1.68	21028	2816	8	0	12	0	0	logfile
✔	6V22	21025	2022-07-07	2019-11-22	3.2	3.50	—	3.4	0.014	1.41	0.0	0.06	17.75	0.02	2.257	5.89	0.21	4.3	95.7	0.0	-3.73	0.73	0.86	3.42	3.4	0.002	0.51	0.0	0.04	15.94	0.00	2.159	7.87	0.21	3.3	96.7	0.0	0.60	1.87	0.73	0.87	2.91	37004	4380	16	0	100	0	0	logfile
✔	6U6i	20666	2022-07-06	2019-08-29	3.12	3.43	—	3.4	0.006	0.45	0.0	0.07	11.24	0.00	2.029	6.16	0.00	7.6	92.4	0.0	-3.59	0.80	0.80	4.39	3.3	0.002	0.46	0.0	0.04	12.86	0.00	2.081	5.43	0.00	4.8	95.2	0.0	0.08	0.50	0.81	0.83	4.07	21701	1496	8	0	11	0	10337	logfile
✔	5NWY	3713	2022-07-07	2017-05-08	2.9	3.27	—	3.2	0.016	1.63	59.0	0.11	15.05	0.01	1.364	4.40	1.45	8.7	90.3	1.0	-4.03	0.83	0.90	4.04	3.2	0.002	0.61	0.0	0.03	15.39	0.01	1.997	11.21	2.86	7.8	92.0	0.1	-1.06	0.46	0.82	0.87	2.89	144142	5718	56	4633	0	0	0	logfile
✔	6D3R	7793	2022-07-03	2018-04-16	4.3	4.80	4.40	4.5	0.017	1.75	0.0	0.10	9.07	0.01	2.385	0.71	0.00	1.5	98.5	0.0	0.66	0.66	0.76	—	4.5	0.002	0.65	0.0	0.04	11.84	0.00	2.257	6.79	0.00	2.2	97.8	0.0	1.88	1.21	0.68	0.77	—	7610	1127	1	0	2	0	0	logfile
✔	6o0Z	0585	2022-07-03	2019-02-17	3.3	3.94	—	3.6	0.006	0.72	0.0	0.04	16.28	0.00	2.302	2.58	0.27	6.3	93.7	0.0	-4.11	0.86	0.88	3.46	3.6	0.002	0.52	0.0	0.03	16.62	0.00	2.157	4.96	0.14	5.7	94.3	0.0	0.16	0.32	0.85	0.88	3.28	11912	1288	4	135	0	0	0	logfile
✔	7C8D	30305	2022-07-03	2020-05-29	3.0	2.79	—	2.8	0.003	0.53	0.0	0.04	17.37	0.00	1.998	9.11	5.90	3.6	96.4	0.0	-2.80	0.71	0.76	3.07	2.8	0.002	0.65	0.0	0.04	17.82	0.00	2.096	10.00	3.69	4.6	95.4	0.0	0.12	1.10	0.72	0.78	2.32	6359	792	3	0	1	0	0	logfile
✔	6LLY	0915	2022-07-03	2019-12-24	2.8	2.92	2.72	2.9	0.003	0.60	0.0	0.04	12.24	0.00	2.043	6.33	0.12	3.1	96.9	0.0	-4.03	0.66	0.79	2.62	2.9	0.002	0.57	0.0	0.04	15.50	0.00	1.263	8.82	1.75	2.9	97.1	0.0	-0.03	0.48	0.66	0.80	1.81	7774	1006	1	0	2	0	0	logfile
✔	5A6F	3063	2022-07-03	2015-06-25	4.2	5.75	—	5.0	0.012	1.50	0.0	0.05	12.32	0.01	2.112	10.08	3.74	12.2	87.6	0.2	-4.94	0.56	0.74	—	4.7	0.002	0.57	0.0	0.04	10.94	0.00	2.010	10.19	0.00	5.1	94.9	0.0	-1.00	0.99	0.57	0.75	—	8881	540	2	0	43	0	4330	logfile
✔	6oVH	20212	2022-07-03	2019-05-07	2.6	2.81	2.71	2.8	0.014	1.10	0.0	0.04	17.48	0.01	1.203	1.15	4.55	1.0	99.0	0.0	-6.34	0.75	0.87	4.63	2.8	0.002	0.72	0.0	0.04	18.70	0.00	2.068	2.87	0.19	0.2	99.8	0.0	3.27	0.99	0.77	0.88	3.42	10895	1272	36	0	68	171	0	logfile
✔	6PKV	20367	2022-07-06	2019-06-30	4.3	4.49	—	4.3	0.005	0.86	0.0	0.05	8.98	0.01	2.311	3.59	0.00	4.7	95.3	0.0	-3.45	0.67	0.78	—	4.3	0.002	0.56	0.0	0.04	9.94	0.00	2.255	6.39	0.00	4.1	95.9	0.0	1.40	1.92	0.67	0.77	—	28284	4260	4	0	88	0	0	logfile
✔	6oT2	20192	2022-07-06	2019-05-02	4.1	4.25	4.02	4.1	0.009	0.87	0.0	0.05	8.41	0.01	2.066	6.19	0.00	7.3	92.7	0.0	-2.26	0.71	0.76	—	4.1	0.002	0.52	0.0	0.03	10.42	0.00	2.135	7.27	0.00	5.1	94.9	0.0	1.85	1.72	0.71	0.76	—	32311	2444	4	0	56	0	14975	logfile
✔	6PWN	20508	2022-07-04	2019-07-23	3.1	3.65	2.95	3.4	0.008	0.86	0.0	0.04	14.34	0.00	2.276	8.66	0.44	3.5	96.5	0.0	-2.16	0.80	0.84	2.55	3.4	0.002	0.58	0.0	0.04	15.27	0.00	2.270	6.93	0.13	3.2	96.8	0.0	1.47	1.21	0.81	0.85	1.95	15379	1960	14	0	14	0	0	logfile
✔	6NR4	0489	2022-07-05	2019-01-22	4.3	4.39	4.24	4.3	0.006	0.93	0.0	0.05	9.96	0.01	2.319	3.34	0.39	4.7	95.3	0.0	-3.24	0.60	0.77	—	4.3	0.002	0.58	0.0	0.04	12.17	0.00	2.242	7.66	0.00	3.3	96.7	0.0	2.35	0.80	0.60	0.77	—	23264	3036	4	0	180	0	0	logfile
✔	6C96	7434	2022-07-03	2018-01-25	3.4	3.54	—	3.5	0.009	1.04	0.0	0.06	10.46	0.01	2.277	3.50	0.30	5.1	94.9	0.0	-4.38	0.58	0.82	3.11	3.5	0.002	0.66	0.0	0.04	15.49	0.00	2.162	7.61	0.46	4.3	95.7	0.0	1.10	0.76	0.59	0.83	1.86	12090	1446	4	0	8	0	0	logfile
✔	6MRU	9213	2022-07-03	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.002	0.46	0.0	0.03	13.26	0.00	2.192	3.53	0.00	0.6	99.4	0.0	5.66	3.08	0.75	0.86	1.81	29107	3705	13	0	0	0	0	logfile
✔	6UUS	20901	2022-07-03	2019-10-31	2.4	2.10	2.30	2.4	0.002	0.50	0.0	0.04	17.13	0.00	2.214	7.71	3.27	2.8	97.2	0.0	-2.25	0.57	0.73	3.22	2.3	0.002	0.57	0.0	0.04	17.80	0.00	2.176	9.52	2.25	2.6	97.4	0.0	0.57	1.00	0.63	0.76	3.20	9308	1190	7	0	0	0	0	logfile
✔	6VCD	21149	2022-07-03	2019-12-20	3.0	3.21	—	3.2	0.005	0.70	0.0	0.04	14.13	0.00	2.170	9.40	0.11	10.1	89.7	0.2	-4.83	0.73	0.82	3.84	3.2	0.002	0.62	0.0	0.04	16.54	0.00	2.175	9.84	2.45	8.0	91.9	0.1	-1.65	0.47	0.73	0.83	2.56	8082	1033	4	0	1	0	0	logfile

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