Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RVR	10010	2022-12-20	2019-05-31	3.46	3.63	—	3.5	0.008	0.75	0.0	0.05	14.89	0.00	2.082	8.59	0.57	10.3	89.7	0.0	-4.34	0.81	0.85	2.30	3.5	0.002	0.58	0.0	0.04	15.99	0.00	2.209	6.68	0.31	7.6	92.4	0.0	-0.52	0.45	0.79	0.84	1.87	37716	4680	12	0	0	0	0	logfile
✔	6QPi	4614	2022-12-11	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.002	0.44	0.0	0.04	4.28	0.00	2.462	1.49	0.00	2.8	97.2	0.0	2.25	1.20	0.40	0.62	—	2288	462	2	0	0	0	0	logfile
✔	6o0Z	0585	2022-12-12	2019-02-17	3.3	3.94	—	3.6	0.006	0.72	0.0	0.04	16.28	0.00	2.302	2.58	0.27	6.3	93.7	0.0	-4.11	0.86	0.88	3.46	3.6	0.002	0.52	0.0	0.03	16.62	0.00	2.157	4.96	0.14	5.7	94.3	0.0	0.16	0.32	0.85	0.88	3.28	11912	1288	4	135	0	0	0	logfile
✔	5A6F	3063	2022-12-12	2015-06-25	4.2	5.75	—	5.0	0.012	1.50	0.0	0.05	12.32	0.01	2.112	10.08	3.74	12.2	87.6	0.2	-4.94	0.56	0.74	—	4.7	0.002	0.57	0.0	0.04	10.94	0.00	2.010	10.19	0.00	5.1	94.9	0.0	-1.00	0.99	0.57	0.75	—	8881	540	2	0	43	0	4330	logfile
✔	6oT2	20192	2022-12-16	2019-05-02	4.1	4.25	4.02	4.1	0.009	0.87	0.0	0.05	8.41	0.01	2.066	6.19	0.00	7.3	92.7	0.0	-2.26	0.71	0.76	—	4.1	0.002	0.52	0.0	0.03	10.42	0.00	2.135	7.27	0.00	5.1	94.9	0.0	1.85	1.72	0.71	0.76	—	32311	2444	4	0	56	0	14975	logfile
✔	6PQP	20450	2022-12-14	2019-07-09	3.06	3.46	3.03	3.4	0.012	1.29	0.0	0.23	17.05	0.01	2.132	8.99	0.19	4.3	95.7	0.0	-3.28	0.74	0.82	3.00	3.4	0.002	0.57	0.0	0.04	16.68	0.00	2.157	6.67	0.05	2.8	97.2	0.0	1.87	2.26	0.74	0.85	2.21	20492	2460	12	0	36	0	0	logfile
✔	6CJU	7484	2022-12-13	2018-02-26	3.35	3.50	—	3.4	0.011	1.50	0.0	0.07	15.93	0.01	2.277	6.56	1.49	7.3	92.7	0.0	-4.12	0.69	0.83	2.94	3.4	0.002	0.68	0.0	0.04	16.72	0.00	2.194	7.79	0.00	5.6	94.4	0.0	0.77	0.63	0.70	0.84	2.29	13076	1560	8	0	36	0	0	logfile
✔	6CJT	7483	2022-12-13	2018-02-26	3.46	3.58	—	3.5	0.014	1.44	0.0	0.07	13.62	0.01	2.280	5.85	0.59	7.4	92.6	0.0	-3.58	0.72	0.84	2.63	3.5	0.002	0.71	0.0	0.04	13.49	0.00	2.207	8.02	0.29	5.7	94.3	0.0	1.56	1.31	0.73	0.86	1.39	13208	1584	8	0	28	0	0	logfile
✔	6oGZ	20060	2022-12-15	2019-04-03	3.6	3.85	—	3.8	0.008	0.90	0.0	0.06	15.78	0.01	2.244	5.41	0.17	4.2	95.8	0.0	-5.51	0.47	0.86	2.42	3.8	0.002	0.58	0.0	0.04	17.31	0.00	2.010	8.88	0.50	2.8	97.2	0.0	-1.76	1.43	0.45	0.85	1.67	74962	9081	14	35	2	0	0	logfile
✔	6PUo	20478	2022-12-20	2019-07-18	3.3	3.94	—	3.6	0.007	0.90	0.0	0.05	13.53	0.01	2.305	5.35	0.35	7.4	92.5	0.2	-3.47	0.74	0.80	2.49	3.5	0.002	0.63	0.0	0.04	14.16	0.00	2.223	7.26	0.29	6.1	93.8	0.1	0.30	1.07	0.77	0.86	2.40	37804	5208	4	0	0	0	0	logfile
✔	6P9X	20277	2022-12-11	2019-06-10	2.91	3.05	2.91	3.1	0.004	0.57	0.0	0.04	12.46	0.00	2.211	5.77	0.23	2.1	97.9	0.0	-3.97	0.64	0.82	4.18	3.1	0.002	0.55	0.0	0.04	15.58	0.00	2.223	7.50	1.94	2.7	97.3	0.0	0.74	0.47	0.66	0.84	3.28	8177	1015	9	0	0	17	0	logfile
✔	6oFJ	20047	2022-12-12	2019-03-30	4.5	5.60	3.27	7.8	0.007	0.96	0.0	0.05	15.74	0.01	2.135	3.88	0.00	7.1	92.9	0.0	-4.36	0.48	0.33	—	7.8	0.002	0.60	0.0	0.04	14.08	0.00	1.999	8.93	0.00	10.1	89.9	0.0	-2.15	1.20	0.56	0.54	—	10310	650	2	0	0	0	5142	logfile
✔	6DMR	7965	2022-12-14	2018-06-05	3.9	4.25	—	4.2	0.005	0.91	0.0	0.05	10.34	0.01	2.280	3.77	0.00	4.2	95.8	0.0	-4.22	0.62	0.70	1.82	4.1	0.002	0.62	0.0	0.04	14.97	0.00	2.278	6.88	0.10	3.1	96.9	0.0	-0.45	1.74	0.75	0.87	1.48	19412	2424	4	0	0	0	0	logfile
✔	6i26	0328	2022-12-14	2018-10-31	4.3	4.37	—	4.2	0.005	0.89	0.0	0.05	8.22	0.01	0.411	6.12	0.50	6.4	93.3	0.3	-6.25	0.75	0.60	—	4.2	0.002	0.67	0.0	0.04	10.66	0.00	2.210	5.49	0.07	5.9	94.1	0.0	0.04	0.98	0.84	0.77	—	22765	3366	1	0	221	0	0	logfile
✔	6MHQ	9116	2022-12-16	2018-09-18	3.4	3.50	—	3.5	0.018	0.80	0.0	0.08	12.18	0.00	2.210	6.75	3.14	5.8	94.2	0.0	-1.67	0.73	0.83	2.60	3.5	0.002	0.49	0.0	0.04	15.39	0.00	2.088	11.34	0.84	5.0	95.0	0.0	2.21	1.06	0.72	0.86	2.42	32640	2124	12	0	0	0	15264	logfile
✔	6Si8	10208	2022-12-15	2019-08-09	3.4	3.84	—	3.8	0.010	1.11	0.0	0.07	14.59	0.01	2.250	4.09	2.45	8.3	91.3	0.4	-3.81	0.70	0.76	3.61	3.8	0.002	0.62	0.0	0.04	15.10	0.00	1.980	6.64	0.42	3.5	96.5	0.1	-0.90	0.84	0.73	0.81	3.40	26542	1700	8	0	4	0	13086	logfile
✔	6N2P	9332	2022-12-13	2018-11-13	4.0	4.78	—	4.2	0.009	0.87	0.0	0.04	7.86	0.01	2.203	7.41	0.00	12.8	87.2	0.0	-4.67	0.58	0.72	—	4.2	0.002	0.62	0.0	0.04	10.81	0.00	2.162	7.00	0.00	8.6	91.4	0.0	0.39	1.38	0.59	0.82	—	14570	880	10	0	0	0	7380	logfile
✔	6NT5	0502	2022-12-11	2019-01-28	4.1	4.28	—	4.1	0.006	0.93	0.0	0.05	10.32	0.01	2.300	3.81	0.41	4.7	95.3	0.0	-2.40	0.73	0.82	—	4.1	0.002	0.57	0.0	0.04	12.52	0.00	2.325	7.08	0.00	2.0	98.0	0.0	1.95	1.16	0.73	0.81	—	4586	584	2	0	0	0	0	logfile
✔	6U88	20682	2022-12-14	2019-09-04	3.2	3.34	3.28	3.3	0.009	1.05	0.0	0.06	15.82	0.01	2.328	4.30	0.74	3.2	96.8	0.0	-4.92	0.68	0.82	2.57	3.3	0.002	0.55	0.0	0.04	16.69	0.00	2.149	7.48	0.14	1.4	98.6	0.0	0.80	1.60	0.69	0.84	2.64	20004	2444	8	0	4	0	0	logfile
✔	6E7Y	9001	2022-12-13	2018-07-27	3.57	3.68	—	3.7	0.005	0.81	0.0	0.05	10.18	0.01	2.364	2.19	0.00	7.1	92.9	0.0	-5.91	0.63	0.80	2.96	3.7	0.002	0.68	0.0	0.04	14.29	0.00	2.317	6.14	0.47	4.8	95.2	0.0	-0.54	1.34	0.63	0.82	2.62	15508	1900	8	0	4	0	0	logfile

• ← previous
• Page 2 of 443
• next →