Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6VVo	21405	2022-04-07	2020-02-18	3.4	3.45	—	3.3	0.008	0.82	0.0	0.05	14.00	0.00	1.915	9.84	0.41	4.7	95.2	0.1	-2.93	0.89	0.86	2.75	3.3	0.002	0.54	0.0	0.04	15.19	0.00	1.979	7.03	0.27	3.1	96.9	0.0	0.71	1.15	0.90	0.88	2.49	19668	2493	13	0	9	0	0	logfile
✔	6RTC	4997	2022-04-06	2019-05-23	3.96	4.05	3.97	4.0	0.007	0.91	0.0	0.05	14.96	0.01	2.295	1.19	0.00	3.9	96.1	0.0	-3.83	0.68	0.80	1.58	4.0	0.002	0.58	0.0	0.04	16.14	0.00	2.258	6.56	0.10	4.6	95.4	0.0	0.77	0.62	0.68	0.81	1.63	19374	1242	2	0	0	0	9804	logfile
✔	6PoS	20418	2022-04-04	2019-07-05	4.12	4.39	—	4.2	0.003	0.68	0.0	0.04	11.58	0.01	2.116	2.48	0.00	0.1	99.9	0.0	-2.43	0.80	0.77	—	4.2	0.002	0.54	0.0	0.04	13.02	0.00	1.917	9.09	0.03	2.9	97.1	0.0	0.18	1.02	0.82	0.80	—	53503	3425	20	0	13	0	26853	logfile
✔	6DMR	7965	2022-04-06	2018-06-05	3.9	4.25	—	4.2	0.005	0.91	0.0	0.05	10.34	0.01	2.280	3.54	0.00	4.2	95.8	0.0	-4.22	0.62	0.70	1.82	4.1	0.002	0.62	0.0	0.04	14.97	0.00	2.278	6.37	0.10	3.1	96.9	0.0	-0.45	1.74	0.75	0.87	1.48	19412	2424	4	0	0	0	0	logfile
✔	6DMW	7967	2022-04-06	2018-06-05	4.4	4.49	—	4.4	0.006	1.02	0.0	0.05	11.36	0.01	2.253	6.61	0.18	4.0	96.0	0.0	-3.38	0.59	0.66	—	4.4	0.002	0.68	0.0	0.04	13.04	0.00	2.175	8.26	0.00	2.7	97.3	0.0	0.60	0.94	0.71	0.84	—	20546	2562	6	0	3	0	0	logfile
✔	6iFK	9653	2022-04-06	2018-09-20	3.2	3.32	—	3.3	0.009	1.20	1.0	0.06	12.74	0.01	2.046	6.33	1.01	10.7	89.0	0.3	-4.87	0.74	0.82	3.58	3.3	0.002	0.64	0.0	0.04	16.09	0.00	2.023	12.40	0.26	9.3	90.6	0.0	-1.88	0.71	0.75	0.83	2.67	19448	2256	11	67	5	0	0	logfile
✔	6NT5	0502	2022-04-04	2019-01-28	4.1	4.28	—	4.1	0.006	0.93	0.0	0.05	10.32	0.01	2.300	3.59	0.41	4.7	95.3	0.0	-2.40	0.73	0.82	—	4.1	0.002	0.57	0.0	0.04	12.52	0.00	2.325	6.86	0.00	2.0	98.0	0.0	1.95	1.16	0.73	0.81	—	4586	584	2	0	0	0	0	logfile
✔	6N2P	9332	2022-04-05	2018-11-13	4.0	4.78	—	4.2	0.009	0.87	0.0	0.04	7.86	0.01	2.203	7.41	0.00	12.8	87.2	0.0	-4.67	0.58	0.72	—	4.2	0.002	0.62	0.0	0.04	10.81	0.00	2.162	7.00	0.00	8.6	91.4	0.0	0.39	1.38	0.59	0.82	—	14570	880	10	0	0	0	7380	logfile
✔	6GYN	0093	2022-04-06	2018-06-30	3.4	3.66	3.52	3.6	0.008	0.85	0.0	0.05	9.32	0.01	2.273	3.08	0.00	4.7	95.3	0.0	-2.56	0.66	0.83	3.51	3.6	0.002	0.54	0.0	0.04	13.29	0.00	2.264	7.43	0.17	2.6	97.4	0.0	2.33	0.49	0.65	0.83	2.26	16932	1980	8	0	36	0	0	logfile
✔	6RVR	10010	2022-04-08	2019-05-31	3.46	3.63	—	3.5	0.008	0.75	0.0	0.05	14.89	0.00	2.082	8.59	0.57	10.3	89.7	0.0	-4.34	0.81	0.85	2.30	3.5	0.002	0.58	0.0	0.04	15.89	0.00	2.183	6.63	0.19	6.3	93.7	0.0	-0.67	0.46	0.79	0.84	1.75	37716	4680	12	0	0	0	0	logfile
✔	6V5V	21054	2022-04-04	2019-12-04	3.8	4.01	—	3.9	0.003	0.51	0.0	0.04	13.58	0.00	2.212	6.07	0.00	4.6	95.4	0.0	-2.04	0.52	0.83	2.06	3.9	0.002	0.54	0.0	0.04	14.64	0.00	2.192	7.93	0.30	3.2	96.8	0.0	0.28	0.57	0.53	0.82	1.76	2979	369	1	1	0	0	0	logfile
✔	6HYP	0309	2022-04-05	2018-10-22	4.4	4.53	—	4.4	0.003	0.72	0.0	0.05	8.72	0.00	1.943	1.67	0.34	7.3	92.2	0.4	-5.99	0.75	0.69	—	4.4	0.002	0.67	0.0	0.04	8.23	0.00	2.173	3.38	0.00	7.0	92.9	0.1	-1.16	0.61	0.76	0.73	—	12392	2082	1	0	192	0	0	logfile
✔	6G19	4338	2022-04-05	2018-03-20	3.68	3.74	3.61	3.7	0.013	1.15	0.0	0.06	10.38	0.01	2.086	11.49	0.00	10.2	89.5	0.3	-4.18	0.57	0.77	2.62	3.7	0.002	0.72	0.0	0.04	14.67	0.00	2.079	18.06	0.00	8.6	91.4	0.0	-0.29	0.94	0.58	0.78	1.93	10503	682	4	28	2	0	4402	logfile
✔	6D8C	7831	2022-04-09	2018-04-26	3.54	3.63	3.43	3.6	0.006	0.82	0.0	0.05	11.57	0.01	1.816	9.56	0.85	2.9	97.1	0.0	-2.35	0.60	0.78	2.62	3.6	0.002	0.58	0.0	0.04	15.50	0.00	1.881	8.88	0.24	4.5	95.5	0.0	0.59	1.66	0.62	0.82	2.34	39181	2476	18	0	10	0	19516	logfile
✔	6CG0	7470	2022-04-06	2018-02-19	3.17	3.69	—	3.3	0.003	0.60	0.0	0.04	20.01	0.00	2.205	15.18	4.08	2.5	97.4	0.1	-2.47	0.91	0.85	3.15	3.3	0.002	0.54	0.0	0.04	20.30	0.00	2.133	7.94	0.12	2.0	98.0	0.0	0.50	0.53	0.92	0.88	2.66	20080	1989	13	212	4	0	0	logfile
✔	6H61	0143	2022-04-05	2018-07-25	4.02	4.20	3.87	4.0	0.007	0.84	0.0	0.05	9.67	0.00	2.107	14.74	0.18	9.5	90.5	0.0	-2.98	0.62	0.78	—	4.0	0.002	0.57	0.0	0.04	12.00	0.00	2.087	22.42	0.00	6.1	93.9	0.0	0.63	1.83	0.63	0.77	—	9912	660	4	30	1	0	4057	logfile
✔	6SYT	10347	2022-04-06	2019-10-01	3.45	3.54	—	3.5	0.018	1.23	0.0	0.16	9.36	0.01	1.903	3.04	0.13	7.5	92.4	0.1	-5.37	0.69	0.81	4.11	3.5	0.002	0.60	0.0	0.04	13.79	0.00	2.060	5.04	0.25	3.1	96.9	0.0	1.00	0.64	0.71	0.84	2.38	18369	2369	5	0	216	0	0	logfile
✔	5WEo	8823	2022-04-08	2017-07-10	4.2	4.35	—	4.2	0.009	1.05	0.0	0.06	9.88	0.01	2.188	8.90	0.24	7.3	92.7	0.1	-3.69	0.80	0.72	—	4.2	0.002	0.60	0.0	0.04	11.37	0.00	2.083	8.14	0.00	5.0	95.0	0.0	0.15	1.00	0.87	0.83	—	31168	3954	8	0	4	0	0	logfile
✔	6o0Z	0585	2022-04-05	2019-02-17	3.3	3.94	—	3.6	0.006	0.72	0.0	0.04	16.28	0.00	2.302	2.58	0.27	6.3	93.7	0.0	-4.11	0.86	0.88	3.46	3.6	0.002	0.52	0.0	0.03	16.62	0.00	2.157	4.96	0.14	5.7	94.3	0.0	0.16	0.32	0.85	0.88	3.28	11912	1288	4	135	0	0	0	logfile
✔	6C96	7434	2022-04-05	2018-01-25	3.4	3.54	—	3.5	0.009	1.04	0.0	0.06	10.46	0.01	2.277	3.50	0.30	5.1	94.9	0.0	-4.38	0.58	0.82	3.11	3.5	0.002	0.66	0.0	0.04	15.49	0.00	2.162	7.57	0.46	4.3	95.7	0.0	1.10	0.76	0.59	0.83	1.86	12090	1446	4	0	8	0	0	logfile

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