Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6S6X	10108	2022-07-06	2019-07-03	3.5	3.64	3.54	3.6	0.023	0.99	0.0	0.13	14.05	0.00	2.111	6.90	0.04	4.2	95.8	0.0	-2.91	0.76	0.85	1.81	3.6	0.002	0.84	0.0	0.05	15.60	0.00	1.788	6.09	0.16	2.8	97.2	0.0	-0.13	1.55	0.77	0.86	1.78	90342	11664	24	0	30	0	0	logfile
✔	6PSN	20459	2022-07-06	2019-07-12	4.6	4.92	—	4.6	0.006	0.93	0.0	0.06	9.42	0.01	2.107	7.33	0.65	3.2	96.8	0.0	-1.98	0.81	0.80	—	4.6	0.002	0.59	0.0	0.04	10.28	0.00	2.102	11.30	0.00	3.5	96.5	0.0	-0.20	2.25	0.81	0.77	—	32830	4154	15	0	14	0	0	logfile
✔	6DMR	7965	2022-07-04	2018-06-05	3.9	4.25	—	4.2	0.005	0.91	0.0	0.05	10.34	0.01	2.280	3.77	0.00	4.2	95.8	0.0	-4.22	0.62	0.70	1.82	4.1	0.002	0.62	0.0	0.04	14.97	0.00	2.278	6.88	0.10	3.1	96.9	0.0	-0.45	1.74	0.75	0.87	1.48	19412	2424	4	0	0	0	0	logfile
✔	6CUD	7620	2022-07-04	2018-03-25	3.3	3.61	—	3.5	0.007	1.13	0.0	0.06	12.63	0.02	2.171	6.98	1.47	4.4	95.5	0.1	-3.04	0.71	0.83	1.93	3.5	0.002	0.55	0.0	0.04	13.46	0.00	2.265	3.15	0.16	3.2	96.7	0.1	2.37	1.60	0.72	0.85	1.68	21028	2816	8	0	12	0	0	logfile
✔	5TTP	8467	2022-07-03	2016-11-04	4.8	4.88	—	4.5	0.006	1.36	0.0	0.06	11.70	0.01	2.038	24.92	0.00	14.1	85.2	0.7	-5.87	0.61	0.60	—	4.6	0.002	0.75	0.0	0.04	4.87	0.00	2.268	5.23	0.00	12.2	87.7	0.2	0.48	2.21	0.67	0.69	—	5616	1138	2	0	0	0	0	logfile
✔	6UCB	20727	2022-07-06	2019-09-15	3.28	3.46	—	3.5	0.009	0.76	0.0	0.05	13.85	0.01	2.152	5.80	0.00	5.1	94.9	0.0	-3.14	0.64	0.76	2.69	3.4	0.002	0.47	0.0	0.04	14.66	0.00	2.121	9.27	0.06	3.7	96.3	0.0	0.65	0.93	0.66	0.80	2.70	32324	2044	16	0	30	0	15694	logfile
✔	6MHQ	9116	2022-07-06	2018-09-18	3.4	3.50	—	3.5	0.018	0.80	0.0	0.08	12.18	0.00	2.210	6.75	3.14	5.8	94.2	0.0	-1.67	0.73	0.83	2.60	3.5	0.002	0.49	0.0	0.04	15.39	0.00	2.088	11.34	0.84	5.0	95.0	0.0	2.21	1.06	0.73	0.85	2.42	32640	2124	12	0	0	0	15264	logfile
✔	6TUQ	10594	2022-07-04	2020-01-08	3.9	4.52	—	4.0	0.009	1.01	0.0	0.05	11.22	0.00	2.191	8.45	3.12	0.0	100.0	0.0	-6.69	0.68	0.88	0.54	4.0	0.002	0.69	0.0	0.04	12.40	0.00	2.309	10.56	0.19	0.0	100.0	0.0	-0.42	1.66	0.69	0.88	0.80	16100	2300	50	0	0	0	0	logfile
✔	6VQi	21351	2022-07-03	2020-02-05	4.3	4.89	—	4.2	0.005	1.14	0.0	0.05	3.90	0.01	2.327	1.95	0.00	1.3	98.2	0.5	2.16	0.56	0.73	—	4.1	0.002	0.54	0.0	0.03	3.92	0.00	2.243	3.65	0.00	5.4	94.5	0.1	3.11	0.74	0.57	0.74	—	5278	1062	8	0	0	0	0	logfile
✔	7C8D	30305	2022-07-03	2020-05-29	3.0	2.79	—	2.8	0.003	0.53	0.0	0.04	17.37	0.00	1.998	9.11	5.90	3.6	96.4	0.0	-2.80	0.71	0.76	3.07	2.8	0.002	0.65	0.0	0.04	17.82	0.00	2.096	10.00	3.69	4.6	95.4	0.0	0.12	1.10	0.72	0.78	2.32	6359	792	3	0	1	0	0	logfile
✔	6N23	9321	2022-07-04	2018-11-12	3.1	3.91	—	3.6	0.008	0.78	0.0	0.05	9.58	0.01	2.231	2.60	0.00	3.3	96.7	0.0	-5.52	0.79	0.87	4.09	3.6	0.002	0.55	0.0	0.04	12.60	0.00	2.275	5.29	0.12	2.2	97.8	0.0	1.96	2.23	0.71	0.83	2.76	14935	1815	10	0	5	0	0	logfile
✔	6DMW	7967	2022-07-04	2018-06-05	4.4	4.49	—	4.4	0.006	1.02	0.0	0.05	11.36	0.01	2.253	6.85	0.18	4.0	96.0	0.0	-3.38	0.59	0.66	—	4.4	0.002	0.68	0.0	0.04	13.04	0.00	2.175	8.43	0.00	2.7	97.3	0.0	0.60	0.94	0.71	0.84	—	20546	2562	6	0	3	0	0	logfile
✔	7BST	30166	2022-07-07	2020-03-31	4.37	4.53	—	4.3	0.004	1.02	1.0	0.06	11.11	0.01	2.232	7.22	0.56	10.3	89.7	0.0	-4.41	0.86	0.72	—	4.3	0.002	0.70	0.0	0.04	12.19	0.00	2.161	12.68	0.00	7.8	92.2	0.0	-1.17	1.60	0.88	0.75	—	28266	3508	7	0	0	0	0	logfile
✔	6VCD	21149	2022-07-03	2019-12-20	3.0	3.21	—	3.2	0.005	0.70	0.0	0.04	14.13	0.00	2.170	9.40	0.11	10.1	89.7	0.2	-4.83	0.73	0.82	3.84	3.2	0.002	0.62	0.0	0.04	16.54	0.00	2.175	9.84	2.45	8.0	91.9	0.1	-1.65	0.47	0.73	0.83	2.56	8082	1033	4	0	1	0	0	logfile
✔	6WBi	21590	2022-07-03	2020-03-26	4.39	4.98	—	3.3	0.015	0.91	0.0	0.04	10.97	0.01	2.117	12.17	1.00	4.8	95.1	0.0	-0.82	0.70	0.80	—	3.3	0.002	0.61	0.0	0.04	9.93	0.00	2.197	5.92	0.00	3.2	96.8	0.0	3.29	0.52	0.72	0.84	—	13018	2284	8	0	1	0	0	logfile
✔	6YYT	11007	2022-07-03	2020-05-06	2.9	3.28	3.09	3.2	0.003	0.47	0.0	0.04	14.59	0.00	2.258	2.82	0.36	2.9	97.1	0.0	-0.98	0.80	0.82	2.65	3.2	0.002	0.56	0.0	0.04	15.90	0.00	2.173	8.64	2.35	2.6	97.4	0.0	1.18	0.45	0.79	0.85	2.79	11375	1298	9	54	2	0	0	logfile
✔	7JG8	22314	2022-07-04	2020-07-18	3.3	2.35	3.38	3.3	0.009	1.50	0.0	0.20	7.20	0.01	2.424	0.51	0.00	3.2	96.6	0.2	-1.30	0.62	0.55	—	3.4	0.002	0.82	0.0	0.08	5.33	0.00	2.297	1.62	0.00	7.7	92.2	0.1	-1.26	1.28	0.72	0.70	—	19573	4827	26	0	7	0	0	logfile
✔	6UW6	20918	2022-07-04	2019-11-04	3.66	3.79	—	3.8	0.015	1.24	0.0	0.07	16.71	0.01	2.299	5.68	0.00	8.4	91.6	0.0	-4.85	0.70	0.84	2.14	3.8	0.002	0.62	0.0	0.04	17.32	0.00	2.188	7.71	0.42	6.0	94.0	0.0	0.52	0.59	0.69	0.83	1.59	20072	2408	8	0	20	0	0	logfile
✔	7CMV	30411	2022-07-03	2020-07-29	2.7	2.91	—	2.9	0.005	0.49	0.0	0.04	12.45	0.00	2.032	4.07	0.00	1.5	98.5	0.0	2.95	0.61	0.79	2.85	2.9	0.002	0.52	0.0	0.04	15.66	0.00	2.173	5.56	1.77	1.9	98.1	0.0	1.98	0.46	0.64	0.83	2.86	8775	1123	5	0	1	0	0	logfile
✔	7KNS	20016	2022-07-07	2020-11-05	2.77	2.92	2.80	2.9	0.005	0.72	0.0	0.05	13.57	0.00	1.842	3.71	0.00	3.0	97.0	0.0	-0.78	0.78	0.90	5.21	2.9	0.002	0.51	0.0	0.04	15.90	0.00	1.905	6.04	1.67	2.7	97.3	0.0	0.06	0.87	0.75	0.91	4.62	38034	5022	12	0	12	0	0	logfile

• ← previous
• Page 5 of 392
• next →