Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7BVG	30219	2023-11-17	2020-04-10	3.1	3.58	3.17	3.5	0.007	1.14	4.0	0.05	14.01	0.01	1.815	11.25	0.17	8.6	91.1	0.3	-4.51	0.71	0.86	2.82	3.5	0.002	0.82	0.0	0.04	14.74	0.01	2.154	7.76	0.34	6.9	93.0	0.1	-1.51	0.49	0.73	0.87	2.23	17231	2234	6	0	9	0	0	logfile
✔	7PTR	13634	2023-11-20	2021-09-27	3.46	4.28	3.39	3.8	0.002	0.47	0.0	0.04	9.81	0.00	2.195	6.90	0.00	3.0	97.0	0.0	-0.08	0.75	0.80	1.24	3.9	0.002	0.52	0.0	0.04	12.69	0.00	2.112	8.76	0.20	3.2	96.8	0.0	-0.76	0.47	0.75	0.83	1.14	31704	4350	12	0	36	0	0	logfile
✔	7L7i	23213	2023-11-16	2020-12-28	3.3	3.85	—	3.7	0.013	1.76	3.0	0.09	14.06	0.01	2.300	1.52	0.76	3.7	96.1	0.2	-1.40	0.78	0.68	3.47	3.7	0.002	0.56	0.0	0.04	15.26	0.00	2.190	7.83	0.06	3.1	96.9	0.0	0.70	1.57	0.84	0.84	2.46	14425	1775	6	0	2	0	0	logfile
✔	6CUD	7620	2023-11-18	2018-03-25	3.3	3.61	—	3.5	0.007	1.13	0.0	0.06	12.64	0.02	2.171	6.98	1.47	4.4	95.5	0.1	-3.04	0.71	0.83	1.93	3.5	0.002	0.54	0.0	0.04	13.42	0.00	2.262	3.56	0.16	2.6	97.3	0.1	2.44	1.60	0.72	0.84	1.64	21028	2816	8	0	12	0	0	logfile
✔	7BH9	12187	2023-11-13	2021-01-11	2.9	3.58	2.91	3.4	0.007	0.77	0.0	0.05	13.27	0.00	2.021	5.17	0.33	4.9	95.1	0.0	-3.10	0.85	0.88	3.70	3.4	0.002	0.54	0.0	0.04	15.07	0.00	2.180	2.80	1.33	1.9	98.1	0.0	0.68	0.39	0.80	0.83	2.63	5876	730	3	0	4	0	0	logfile
✔	7S6D	24875	2023-11-15	2021-09-13	3.1	3.82	—	3.4	0.005	0.72	0.0	0.04	13.60	0.01	2.083	3.29	0.00	3.4	96.6	0.0	-0.10	0.86	0.81	3.05	3.4	0.002	0.52	0.0	0.04	14.23	0.00	2.020	5.24	0.04	3.1	96.9	0.0	0.48	1.13	0.86	0.83	2.90	46193	3112	8	0	1	0	22846	logfile
✔	7Y38	33591	2023-11-13	2022-06-10	2.8	3.48	2.94	3.3	0.010	0.72	0.0	0.04	14.98	0.00	2.113	3.70	0.04	3.8	96.2	0.1	-0.63	0.78	0.83	2.85	3.3	0.002	0.60	0.0	0.04	15.72	0.00	2.103	4.15	0.47	4.6	95.3	0.1	-0.35	0.34	0.78	0.86	2.46	53135	6704	27	3	36	0	0	logfile
✔	8GSE	34233	2023-11-14	2022-09-06	3.7	3.78	3.73	3.8	0.005	0.68	0.0	0.05	13.93	0.01	2.246	5.81	0.00	5.9	94.1	0.0	-1.94	0.43	0.85	2.71	3.8	0.002	0.54	0.0	0.04	15.70	0.00	2.192	5.60	0.48	3.8	96.2	0.0	-1.18	1.41	0.41	0.83	2.23	7474	952	5	0	0	0	0	logfile
✔	7DAS	30626	2023-11-15	2020-10-18	3.64	4.22	—	3.9	0.006	0.92	0.0	0.07	16.28	0.00	1.496	17.13	0.00	7.9	91.9	0.1	-3.87	0.80	0.78	2.41	3.9	0.002	0.60	0.0	0.04	16.48	0.00	2.196	8.23	0.16	5.5	94.5	0.0	-1.98	1.13	0.82	0.82	2.51	11603	1345	3	66	0	0	0	logfile
✔	7WiV	32537	2023-11-14	2022-01-05	2.88	3.16	—	3.0	0.008	1.02	4.0	0.06	13.63	0.01	2.209	8.44	0.68	9.4	90.2	0.4	-5.21	0.69	0.88	3.24	3.0	0.002	0.68	0.0	0.04	14.94	0.00	2.229	6.28	1.36	6.9	93.0	0.1	-0.34	1.90	0.67	0.87	2.23	8646	1147	3	0	1	0	0	logfile
✔	8A2U	15107	2023-11-16	2022-06-06	2.21	2.31	2.16	2.3	0.004	0.63	0.0	0.04	13.27	0.00	2.173	2.75	0.65	2.5	97.5	0.0	-1.41	0.72	0.86	6.31	2.3	0.002	0.59	0.0	0.04	16.64	0.00	2.155	3.93	0.52	1.3	98.7	0.0	1.13	1.06	0.73	0.88	6.00	15022	1830	15	0	15	512	0	logfile
✔	8E50	27899	2023-11-13	2022-08-19	3.67	3.33	3.68	3.7	0.040	2.29	0.0	0.09	16.13	0.00	1.603	5.17	0.00	4.4	95.6	0.0	-4.32	0.50	0.67	2.44	3.6	0.002	0.56	0.0	0.04	17.05	0.00	2.190	10.05	0.17	3.0	97.0	0.0	1.05	1.68	0.66	0.83	2.11	5277	651	1	0	2	0	0	logfile
✔	7K0Q	22608	2023-11-14	2020-09-04	3.3	3.61	—	3.5	0.006	0.70	0.0	0.05	12.64	0.00	2.116	5.18	0.00	3.3	96.7	0.0	0.45	0.70	0.85	3.35	3.5	0.002	0.48	0.0	0.04	14.21	0.00	2.189	4.84	0.11	2.5	97.5	0.0	1.24	1.46	0.73	0.87	2.87	8778	1107	5	0	2	0	0	logfile
✔	7D61	30587	2023-11-19	2020-09-28	2.8	2.98	—	3.0	0.003	0.77	0.0	0.04	16.50	0.01	2.340	1.83	0.00	2.4	97.6	0.0	-7.13	0.69	0.82	2.59	3.0	0.002	0.62	0.0	0.04	17.80	0.00	2.226	3.61	1.61	2.0	98.0	0.0	0.34	0.55	0.69	0.83	1.31	26664	3168	22	0	55	0	0	logfile
✔	7Ui9	26542	2023-11-15	2022-03-28	3.3	4.81	3.23	2.8	0.004	0.69	0.0	0.05	13.63	0.01	0.850	9.75	0.06	1.9	98.0	0.1	0.62	0.59	0.52	0.82	2.8	0.002	0.60	0.0	0.04	14.79	0.00	2.095	10.75	0.08	2.6	97.4	0.0	1.58	0.50	0.81	0.79	0.66	63137	7857	33	0	0	0	0	logfile
✔	7EDH	31071	2023-11-18	2021-03-16	3.6	4.18	—	4.0	0.004	0.67	0.0	0.05	13.66	0.00	2.189	7.03	0.16	6.4	93.3	0.3	-1.26	0.80	0.78	2.26	4.0	0.002	0.58	0.0	0.04	15.28	0.00	2.170	6.90	0.20	6.0	93.7	0.3	-0.88	0.36	0.81	0.78	2.11	23276	2846	36	0	77	0	0	logfile
✔	7oJi	12952	2023-11-14	2021-05-16	3.4	3.75	3.40	3.6	0.012	1.08	0.0	0.08	11.46	0.00	2.231	4.30	0.41	4.8	95.0	0.2	-0.15	0.69	0.83	3.28	3.6	0.002	0.56	0.0	0.04	14.74	0.00	2.214	5.59	0.61	4.2	95.8	0.0	0.57	0.69	0.72	0.87	2.73	9195	1144	4	0	9	0	0	logfile
✔	7SBY	24992	2023-11-20	2021-09-26	3.0	2.53	2.88	2.8	0.022	1.79	3.0	0.12	10.44	0.01	2.238	0.58	0.16	2.0	98.0	0.0	0.12	0.68	0.86	4.74	2.8	0.002	0.70	0.0	0.04	14.71	0.00	2.212	4.18	2.75	2.5	97.5	0.0	0.03	2.38	0.66	0.85	4.03	29314	3516	23	0	282	0	0	logfile
✔	7ZKi	14763	2023-11-14	2022-04-13	3.6	3.32	3.71	3.1	0.011	0.83	0.0	0.05	13.83	0.04	1.408	9.61	0.17	2.2	97.8	0.0	-0.08	0.57	0.73	1.30	3.1	0.002	0.91	0.0	0.04	15.24	0.01	2.028	8.22	0.17	3.1	96.9	0.0	-0.11	0.39	0.57	0.74	1.35	7120	688	5	77	2	0	0	logfile
✔	7YVQ	34136	2023-11-20	2022-08-19	3.18	3.50	3.32	3.3	0.004	0.58	0.0	0.04	14.17	0.00	2.131	6.40	0.75	6.2	93.8	0.0	-0.26	0.79	0.87	3.43	3.3	0.002	0.47	0.0	0.04	14.98	0.00	2.207	6.67	0.49	4.8	95.2	0.0	0.12	1.28	0.79	0.89	3.08	30742	3874	15	0	21	0	0	logfile

• ← previous
• Page 5 of 528
• next →