Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6MRW	9214	2022-12-12	2018-10-15	4.3	4.76	—	4.3	0.006	0.98	0.0	0.04	10.35	0.01	2.080	4.61	0.41	2.1	97.9	0.0	-0.19	0.82	0.84	—	4.3	0.002	0.48	0.0	0.03	11.74	0.00	2.080	6.81	0.00	1.8	98.2	0.0	6.05	1.27	0.83	0.86	—	31346	3990	14	0	0	0	0	logfile
✔	6RiN	4892	2022-12-15	2019-04-24	3.7	4.07	—	4.0	0.009	0.99	0.0	0.06	11.25	0.01	1.995	14.03	0.07	13.6	86.3	0.0	-4.38	0.83	0.84	2.21	4.0	0.002	0.67	0.0	0.05	15.18	0.00	2.059	8.05	0.24	6.0	94.0	0.0	-0.62	1.33	0.83	0.85	1.64	27584	3363	10	59	3	0	0	logfile
✔	6NHT	9373	2022-12-15	2018-12-23	2.9	3.26	3.11	3.3	0.006	0.75	0.0	0.04	15.21	0.00	2.394	2.27	0.45	2.1	97.9	0.0	-5.86	0.68	0.85	2.73	3.3	0.002	0.52	0.0	0.04	17.67	0.00	2.199	3.76	1.30	1.3	98.7	0.0	1.94	1.58	0.59	0.81	2.61	26136	3432	24	0	0	0	0	logfile
✔	6oR5	9032	2022-12-12	2019-04-29	4.0	4.23	—	3.9	0.008	1.12	0.0	0.05	10.85	0.00	2.245	4.84	0.00	17.3	82.4	0.3	-5.53	0.76	0.79	—	3.9	0.002	0.56	0.0	0.04	7.06	0.00	2.221	3.09	0.00	12.5	87.5	0.0	-0.20	1.35	0.78	0.79	—	10364	2058	1	0	5	0	0	logfile
✔	6RJ9	4900	2022-12-12	2019-04-26	3.2	3.37	—	3.3	0.006	0.78	0.0	0.05	15.21	0.01	2.292	2.63	0.28	6.7	93.3	0.0	-3.87	0.67	0.86	2.60	3.3	0.002	0.50	0.0	0.04	16.10	0.00	2.220	5.22	0.19	3.9	96.1	0.0	-0.22	0.96	0.66	0.87	2.00	11874	1202	5	97	0	0	0	logfile
✔	6G8Z	4362	2022-12-13	2018-04-10	3.66	3.88	3.72	3.8	0.005	0.77	0.0	0.04	8.70	0.00	2.362	0.22	0.00	3.8	96.2	0.0	-0.63	0.66	0.79	4.14	3.8	0.002	0.53	0.0	0.04	13.44	0.00	2.214	4.83	0.45	2.8	97.2	0.0	2.54	1.65	0.70	0.85	2.73	15966	1908	6	0	0	0	0	logfile
✔	6UZD	20957	2022-12-21	2019-11-14	3.4	3.56	—	3.4	0.007	0.84	0.0	0.06	15.38	0.01	2.258	6.12	0.31	5.7	94.3	0.0	-4.30	0.77	0.84	2.82	3.4	0.002	0.55	0.0	0.04	15.96	0.00	2.160	8.54	0.12	4.1	95.9	0.0	-1.32	0.46	0.77	0.85	2.44	42822	5374	16	0	14	0	0	logfile
✔	6UZE	20958	2022-12-21	2019-11-15	3.4	3.54	—	3.4	0.010	0.96	3.0	0.06	15.55	0.01	2.243	7.03	0.77	7.9	92.0	0.1	-4.13	0.78	0.85	2.93	3.4	0.002	0.55	0.0	0.04	16.15	0.00	2.185	9.15	0.17	4.7	95.3	0.0	-1.26	0.46	0.77	0.85	2.50	42822	5374	16	0	14	0	0	logfile
✔	6KZP	0792	2022-12-12	2019-09-25	3.1	2.67	—	3.1	0.013	1.45	1.0	0.08	14.32	0.01	2.390	10.56	2.44	3.3	96.4	0.3	-4.53	0.59	0.81	3.72	3.1	0.002	0.59	0.0	0.04	16.27	0.00	2.267	4.94	0.00	2.4	97.6	0.0	1.47	0.69	0.59	0.83	2.40	8557	1014	1	0	18	0	0	logfile
✔	6CoY	7544	2022-12-11	2018-03-13	3.36	3.52	3.38	3.6	0.020	1.43	0.0	0.09	10.54	0.01	2.242	2.00	0.00	2.8	96.7	0.4	-0.30	0.70	0.86	2.95	3.6	0.002	0.58	0.0	0.04	13.72	0.01	2.239	6.33	0.39	2.8	97.2	0.0	3.42	1.17	0.58	0.82	1.96	7156	930	4	0	4	0	0	logfile
✔	6V22	21025	2022-12-19	2019-11-22	3.2	3.50	—	3.4	0.014	1.41	0.0	0.06	17.75	0.02	2.257	5.89	0.21	4.3	95.7	0.0	-3.73	0.73	0.86	3.42	3.4	0.002	0.51	0.0	0.04	15.94	0.00	2.159	7.87	0.21	3.3	96.7	0.0	0.60	1.87	0.73	0.86	2.91	37004	4380	16	0	100	0	0	logfile
✔	6UD4	20733	2022-12-16	2019-09-18	3.3	3.63	—	3.5	0.008	0.63	0.0	0.06	13.23	0.01	2.022	6.47	0.12	5.2	94.8	0.0	-3.11	0.65	0.74	1.46	3.5	0.002	0.52	0.0	0.05	14.29	0.00	2.003	9.33	0.12	4.7	95.3	0.0	0.72	1.77	0.66	0.76	1.84	31642	2044	15	0	12	0	15470	logfile
✔	6U6i	20666	2022-12-16	2019-08-29	3.12	3.43	—	3.4	0.006	0.45	0.0	0.07	11.24	0.00	2.029	6.16	0.00	7.6	92.4	0.0	-3.59	0.80	0.80	4.39	3.3	0.002	0.46	0.0	0.04	12.85	0.00	2.083	5.80	0.00	4.8	95.2	0.0	0.06	0.50	0.81	0.82	4.01	21701	1496	9	0	11	0	10337	logfile
✔	6BGo	7098	2022-12-22	2017-10-29	4.2	4.71	—	4.0	0.007	0.99	0.0	0.05	12.93	0.01	1.245	13.74	1.01	3.0	96.9	0.1	-0.26	0.83	0.75	—	4.0	0.002	0.59	0.0	0.04	12.80	0.00	2.076	6.67	0.06	2.7	97.3	0.0	2.09	1.57	0.90	0.85	—	46500	6170	35	0	0	0	0	logfile
✔	6RDT	4830	2022-12-11	2019-04-12	3.4	3.29	—	3.4	0.011	1.02	1.0	0.06	15.14	0.01	2.058	6.14	0.60	5.7	94.0	0.3	-4.05	0.68	0.83	2.56	3.4	0.002	0.59	0.0	0.04	16.24	0.00	1.975	9.86	0.20	4.1	95.8	0.1	0.25	2.40	0.69	0.85	1.91	53748	7103	37	0	11	0	0	logfile
✔	6RE5	4842	2022-12-11	2019-04-12	3.2	3.28	—	3.3	0.010	0.94	0.0	0.06	14.48	0.01	2.163	5.78	0.27	4.8	95.0	0.2	-3.94	0.72	0.85	2.85	3.3	0.002	0.57	0.0	0.04	15.80	0.00	1.956	9.37	0.27	3.3	96.6	0.1	0.37	0.47	0.71	0.86	2.15	53720	7099	37	0	11	0	0	logfile
✔	6UX4	20929	2022-12-13	2019-11-06	3.5	3.60	—	3.6	0.011	0.83	0.0	0.06	13.47	0.01	2.254	3.45	0.29	3.9	96.1	0.0	-4.46	0.67	0.83	2.86	3.6	0.002	0.49	0.0	0.05	14.93	0.00	2.109	6.48	0.29	2.5	97.5	0.0	0.32	1.18	0.66	0.82	2.20	13257	1776	19	0	24	3	0	logfile
✔	6VQi	21351	2022-12-11	2020-02-05	4.3	4.89	—	4.2	0.005	1.14	0.0	0.05	3.90	0.01	2.327	1.95	0.00	1.3	98.2	0.5	2.16	0.56	0.73	—	4.1	0.002	0.54	0.0	0.03	3.92	0.00	2.243	3.65	0.00	5.4	94.5	0.1	3.11	0.74	0.57	0.74	—	5278	1062	8	0	0	0	0	logfile
✔	7BV1	30209	2022-12-12	2020-04-09	2.8	2.97	—	3.0	0.005	0.82	0.0	0.06	15.13	0.00	2.266	7.02	0.00	4.3	95.7	0.0	-1.91	0.62	0.75	2.16	3.0	0.002	0.58	0.0	0.04	17.11	0.00	2.184	7.14	2.80	3.9	96.1	0.0	-0.29	1.66	0.64	0.81	2.50	8799	1112	5	0	2	0	0	logfile
✔	6X0U	21984	2022-12-11	2020-05-17	3.6	3.62	—	3.6	0.004	0.62	0.0	0.04	14.50	0.00	2.277	5.74	0.00	3.7	96.1	0.3	-5.79	0.26	0.78	1.89	3.6	0.002	0.69	0.0	0.03	17.56	0.00	2.197	6.86	0.29	2.9	97.1	0.0	1.58	0.81	0.27	0.78	2.25	3091	398	4	0	0	0	0	logfile

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