Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6VX3	21428	2021-12-01	2020-02-21	3.7	3.91	—	3.9	0.009	1.11	0.0	0.05	19.48	0.00	1.829	25.97	4.02	7.4	92.6	0.0	-4.21	0.60	0.81	2.86	3.9	0.003	0.70	0.0	0.04	18.42	0.00	2.269	9.75	0.25	4.0	96.0	0.0	-1.84	1.31	0.59	0.80	2.00	7780	900	8	0	8	0	0	logfile
✔	6WW2	21927	2021-12-01	2020-05-07	3.7	4.24	—	4.0	0.010	1.08	0.0	0.06	14.27	0.01	2.240	5.73	0.00	10.3	89.6	0.1	-2.34	0.68	0.81	1.89	4.0	0.003	0.71	0.0	0.04	15.48	0.00	2.111	10.46	0.12	6.7	93.2	0.1	-0.81	0.45	0.68	0.80	1.42	7594	982	4	0	0	0	0	logfile
✔	6SKi	10225	2021-12-01	2019-08-15	2.6	2.97	2.57	2.9	0.004	0.72	0.0	0.04	16.20	0.00	2.210	8.64	1.29	1.6	98.4	0.0	-0.80	0.63	0.83	4.83	2.9	0.003	0.55	0.0	0.04	16.67	0.00	2.267	7.50	1.94	3.1	96.9	0.0	0.90	0.51	0.66	0.86	4.48	4434	569	2	0	0	0	0	logfile
✔	6HD5	0201	2021-12-01	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.003	0.73	0.0	0.04	11.96	0.00	2.138	15.18	0.00	5.4	94.5	0.1	-0.09	2.01	0.45	0.55	—	9707	1234	3	0	0	0	0	logfile
✔	6MSD	9217	2021-12-01	2018-10-16	3.2	3.65	—	3.0	0.007	1.05	2.0	0.06	11.55	0.01	2.019	5.68	0.50	8.3	91.5	0.3	-5.07	0.84	0.81	2.24	3.0	0.003	0.74	0.0	0.04	14.15	0.00	1.925	12.42	0.18	7.5	92.5	0.1	-0.83	1.03	0.86	0.85	1.80	105426	13526	55	0	12	0	0	logfile
✔	6VWX	21425	2021-12-01	2020-02-20	3.1	3.47	—	3.5	0.011	1.29	0.0	0.05	22.59	0.01	2.200	11.67	15.83	8.1	91.5	0.4	-4.41	0.63	0.83	1.16	3.5	0.003	0.70	0.0	0.04	18.60	0.00	2.151	7.76	0.50	7.0	93.0	0.0	-1.19	0.64	0.66	0.85	1.89	7782	900	8	0	10	0	0	logfile
✔	6RDH	4818	2021-12-01	2019-04-12	3.0	3.16	—	3.2	0.010	1.01	1.0	0.06	14.11	0.01	2.025	5.61	0.34	5.0	94.8	0.2	-3.87	0.72	0.85	3.15	3.2	0.003	0.64	0.0	0.04	16.20	0.00	1.893	9.82	1.90	4.0	95.9	0.1	0.07	1.17	0.74	0.87	2.52	53748	7103	37	0	11	0	0	logfile
✔	5W3J	8757	2021-12-01	2017-06-07	4.0	4.33	—	4.1	0.002	0.54	0.0	0.04	8.15	0.00	2.262	6.50	0.00	8.7	90.2	1.2	-5.17	0.60	0.82	—	4.1	0.003	0.79	0.0	0.04	13.49	0.00	1.968	14.62	0.27	4.6	95.0	0.3	-0.63	1.75	0.61	0.85	—	6913	867	4	1	3	0	0	logfile
✔	6WTD	21894	2021-12-01	2020-05-02	4.2	4.24	—	4.2	0.007	1.16	0.0	0.06	15.33	0.01	2.208	7.39	0.86	7.2	92.8	0.0	-6.31	0.56	0.74	—	4.2	0.003	0.85	0.0	0.04	13.44	0.00	2.131	13.49	0.00	5.0	95.0	0.0	-2.16	1.93	0.56	0.72	—	9139	1233	16	0	0	0	0	logfile
✔	6V3F	21035	2021-12-01	2019-11-25	3.7	3.81	—	3.7	0.006	1.16	0.0	0.07	11.29	0.01	2.285	2.23	1.04	2.4	97.3	0.2	1.13	0.68	0.85	2.46	3.7	0.003	0.64	0.0	0.04	13.93	0.01	2.180	6.15	0.09	3.3	96.7	0.1	1.20	0.53	0.68	0.85	2.04	9855	1234	6	0	19	0	0	logfile
✔	6M71	30127	2021-12-01	2020-03-16	2.9	3.35	3.10	3.3	0.003	0.59	0.0	0.04	13.42	0.00	1.966	8.99	0.00	4.2	95.8	0.0	-3.06	0.74	0.80	3.55	3.3	0.003	0.62	0.0	0.04	15.48	0.00	2.220	9.35	1.69	3.8	96.2	0.0	0.05	1.72	0.75	0.82	3.15	8614	1085	4	0	0	0	0	logfile
✔	6LNi	0931	2021-12-01	2019-12-30	2.702	2.94	—	2.9	0.004	0.55	0.0	0.04	14.81	0.00	2.200	10.98	0.00	12.6	87.4	0.0	-6.05	0.48	0.82	5.95	2.9	0.003	0.67	0.0	0.05	19.40	0.00	2.265	11.19	1.23	11.0	89.0	0.0	-3.93	1.18	0.53	0.86	5.22	4920	600	10	0	0	0	0	logfile
✔	6RJU	4906	2021-12-01	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	10.0	0.003	0.66	0.0	0.03	16.23	0.00	2.422	6.03	0.00	3.9	96.1	0.0	-0.32	1.40	0.27	0.03	-0.67	1992	131	1	0	0	0	997	logfile
✔	6SAG	10130	2021-12-01	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.003	0.61	0.0	0.04	15.39	0.01	2.062	3.07	1.30	3.0	97.0	0.0	1.51	0.73	0.60	0.89	6.85	54080	6120	240	120	240	2840	0	logfile
✔	6PZT	20537	2021-12-01	2019-08-01	3.46	3.91	3.76	3.8	0.007	0.75	0.0	0.05	11.59	0.00	2.120	16.50	0.43	12.3	87.7	0.0	-3.13	0.59	0.76	3.32	3.8	0.003	0.70	0.0	0.04	13.69	0.00	2.287	9.32	1.72	8.3	91.7	0.0	0.41	0.58	0.63	0.80	2.09	6062	932	2	0	0	0	0	logfile
✔	7CH1	30368	2021-12-01	2020-07-03	2.6	2.70	—	2.8	0.007	0.87	0.0	0.06	15.52	0.01	2.218	3.39	6.10	4.3	95.6	0.2	-5.35	0.66	0.86	3.92	2.7	0.003	0.58	0.0	0.04	14.77	0.00	2.212	4.29	1.39	3.6	96.4	0.0	2.00	1.21	0.68	0.88	2.82	9948	1280	6	0	6	76	0	logfile
✔	7JYi	22526	2021-12-01	2020-08-30	3.4	3.52	—	3.5	0.008	0.75	0.0	0.05	16.05	0.00	2.104	14.16	5.45	10.3	89.2	0.5	-4.54	0.43	0.84	2.04	3.5	0.003	0.66	0.0	0.04	16.57	0.00	2.106	9.55	0.21	8.2	91.7	0.1	-1.64	0.66	0.41	0.85	1.96	8807	1152	4	0	0	0	0	logfile
✔	6UUN	20883	2021-12-01	2019-10-30	3.0	3.16	2.93	3.2	0.005	0.73	0.0	0.05	11.92	0.00	2.226	8.93	0.45	3.6	96.4	0.0	-1.59	0.63	0.81	3.14	3.1	0.003	0.57	0.0	0.04	15.94	0.00	2.165	8.41	2.95	2.7	97.3	0.0	0.26	1.01	0.69	0.84	3.03	8980	1202	7	0	0	0	0	logfile
✔	6SGS	10183	2021-12-01	2019-08-05	3.2	3.29	3.18	3.3	0.004	0.64	0.0	0.04	13.19	0.00	2.011	5.85	0.14	2.8	97.2	0.0	-3.26	0.57	0.69	0.97	3.3	0.003	0.57	0.0	0.04	15.74	0.00	1.949	6.80	0.17	2.4	97.6	0.0	1.27	2.13	0.67	0.85	2.37	54156	3528	8	0	0	0	27338	logfile
✔	6DW1	8923	2021-12-01	2018-06-26	3.1	3.36	—	3.3	0.005	0.89	0.0	0.05	11.31	0.01	2.304	4.67	0.00	5.7	94.3	0.0	-3.70	0.68	0.82	4.57	3.3	0.003	0.65	0.0	0.04	15.22	0.00	2.096	9.23	0.22	5.4	94.6	0.0	-1.53	0.99	0.70	0.85	4.23	8595	1046	9	0	24	0	0	logfile

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