Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6X3F	22021	2022-05-13	2020-05-21	3.03	3.23	—	3.3	0.006	0.93	0.0	0.06	14.72	0.01	2.351	3.78	0.00	5.0	95.0	0.0	-6.78	0.58	0.85	3.24	3.3	0.002	0.62	0.0	0.04	15.84	0.00	2.290	6.36	0.29	4.0	96.0	0.0	0.02	0.96	0.55	0.85	1.97	9366	1227	6	0	3	0	0	logfile
✔	7LCJ	23275	2022-05-12	2021-01-11	2.82	3.02	2.78	3.1	0.011	1.19	3.0	0.08	13.36	0.01	2.216	8.73	1.16	3.9	96.1	0.0	0.54	0.46	0.80	2.75	3.1	0.002	0.48	0.0	0.03	15.51	0.00	2.257	4.36	0.58	1.8	98.2	0.0	1.56	1.69	0.49	0.82	2.84	3264	390	1	0	1	17	0	logfile
✔	7D60	30586	2022-05-15	2020-09-28	2.61	2.73	—	2.7	0.006	0.89	0.0	0.05	16.44	0.01	2.395	1.56	0.00	2.1	97.9	0.0	-6.95	0.70	0.83	2.76	2.7	0.002	0.59	0.0	0.03	17.57	0.00	2.200	4.01	1.79	2.5	97.5	0.0	1.45	0.54	0.69	0.83	2.00	26664	3168	22	0	55	0	0	logfile
✔	7BH9	12187	2022-05-12	2021-01-11	2.9	3.58	2.91	3.4	0.007	0.76	0.0	0.05	13.23	0.00	2.021	5.17	0.33	4.9	95.1	0.0	-3.10	0.85	0.88	3.70	3.4	0.002	0.53	0.0	0.04	15.21	0.00	2.179	3.42	1.00	2.1	97.9	0.0	0.84	0.39	0.80	0.83	2.44	5876	730	3	0	4	0	0	logfile
✔	7CN0	30412	2022-05-12	2020-07-29	3.9	3.96	—	3.9	0.004	0.62	0.0	0.04	13.32	0.00	1.843	14.90	0.00	8.1	91.9	0.0	-2.90	0.55	0.77	2.36	3.9	0.002	0.65	0.0	0.04	15.93	0.00	2.289	10.80	0.00	6.7	93.3	0.0	0.29	0.62	0.55	0.76	0.83	6602	884	5	0	2	0	0	logfile
✔	7K0Q	22608	2022-05-12	2020-09-04	3.3	3.61	—	3.5	0.006	0.70	0.0	0.05	12.64	0.00	2.116	5.47	0.00	3.3	96.7	0.0	0.45	0.70	0.85	3.35	3.5	0.002	0.49	0.0	0.04	14.23	0.00	2.188	4.90	0.21	2.5	97.5	0.0	1.18	1.46	0.72	0.87	2.83	8778	1107	5	0	2	0	0	logfile
✔	7K8Y	22735	2022-05-15	2020-09-27	4.4	5.34	—	4.4	0.002	0.53	0.0	0.05	10.71	0.00	1.137	21.78	0.04	2.8	97.0	0.3	-2.11	0.80	0.77	—	4.4	0.002	0.58	0.0	0.04	11.36	0.00	2.095	12.62	0.00	3.7	96.1	0.1	-0.30	1.09	0.81	0.81	—	25560	3242	8	0	23	0	0	logfile
✔	7L6E	23202	2022-05-03	2020-12-23	3.15	3.55	—	3.5	0.010	0.87	0.0	0.05	9.13	0.01	1.753	15.38	0.67	2.7	97.3	0.0	-2.02	0.71	0.90	5.86	3.5	0.002	0.58	0.0	0.04	14.24	0.00	2.164	8.24	0.13	2.7	97.3	0.0	-0.64	0.51	0.71	0.91	4.25	248700	31260	120	60	0	0	0	logfile
✔	6X0V	21985	2022-05-12	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.46	0.0	0.04	13.09	0.00	2.230	19.17	0.00	6.0	94.0	0.0	2.59	1.22	0.40	0.75	—	1384	211	4	0	0	0	62	logfile
✔	6Z9F	11122	2022-05-16	2020-06-03	1.56	1.61	1.61	1.6	0.015	1.74	48.0	0.10	15.51	0.01	1.782	5.46	3.66	1.7	98.3	0.0	2.70	0.68	0.69	8.63	1.6	0.002	0.57	0.0	0.04	15.00	0.00	2.179	5.54	3.05	1.8	98.2	0.0	4.97	0.98	0.84	0.85	8.54	41020	4152	72	0	32	4172	0	logfile
✔	7E4T	30987	2022-05-15	2021-02-15	3.0	3.26	3.08	3.3	0.007	0.79	0.0	0.04	13.89	0.00	2.278	6.59	1.01	1.1	98.9	0.0	0.77	0.50	0.68	3.26	3.3	0.002	0.47	0.0	0.03	16.68	0.00	2.181	5.83	3.34	1.2	98.8	0.0	2.36	1.24	0.71	0.85	3.19	22276	2656	8	0	24	0	0	logfile
✔	7D4P	30575	2022-05-15	2020-09-24	2.7	3.03	2.86	3.0	0.007	0.80	0.0	0.04	13.57	0.00	2.269	4.70	0.67	1.2	98.8	0.0	2.42	0.58	0.76	3.11	3.0	0.002	0.48	0.0	0.03	15.83	0.00	2.208	4.35	1.01	0.9	99.1	0.0	2.71	0.61	0.59	0.78	2.69	22472	2676	8	0	28	0	0	logfile
✔	7L6o	23124	2022-05-16	2020-12-23	3.9	4.18	3.92	3.9	0.014	1.95	2.0	0.11	13.32	0.02	2.534	0.26	0.70	8.2	91.1	0.7	-1.91	0.83	0.80	3.20	3.9	0.002	0.55	0.0	0.04	13.57	0.00	1.948	6.17	0.19	4.2	95.8	0.0	-0.63	1.22	0.83	0.80	2.18	29270	1776	51	0	132	0	13598	logfile
✔	6WKN	21705	2022-05-14	2020-04-16	3.46	3.36	3.47	3.3	0.007	0.74	0.0	0.04	15.70	0.01	2.264	6.47	4.53	4.0	96.0	0.0	-2.93	0.78	0.81	2.98	3.3	0.002	0.53	0.0	0.04	16.75	0.00	2.173	9.25	0.20	3.0	97.0	0.0	1.13	0.62	0.79	0.82	2.69	19320	2424	8	0	4	0	0	logfile
✔	7JM9	22390	2022-05-18	2020-07-31	2.5	2.71	2.65	2.7	0.009	1.47	0.0	0.07	13.53	0.00	2.291	3.08	0.56	1.1	98.9	0.0	0.10	0.62	0.82	5.25	2.7	0.002	0.46	0.0	0.04	13.55	0.00	2.085	6.38	1.27	1.4	98.6	0.0	3.63	0.72	0.64	0.85	4.54	41136	2328	36	0	168	156	18876	logfile
✔	7NCA	12264	2022-05-13	2021-01-28	3.47	3.58	3.04	3.6	0.012	2.04	0.0	0.08	10.64	0.01	2.645	0.00	0.19	5.5	94.5	0.0	-2.04	0.73	0.85	4.45	3.7	0.002	0.53	0.0	0.05	13.06	0.00	2.393	1.34	0.19	3.8	96.2	0.0	-3.13	0.76	0.70	0.85	3.61	10428	732	12	0	0	0	5376	logfile
✔	6ZBH	11155	2022-05-14	2020-06-08	3.6	4.44	3.80	3.9	0.010	1.17	0.0	0.08	13.65	0.01	2.465	0.97	0.00	1.0	99.0	0.0	0.82	0.86	0.76	1.40	3.9	0.002	0.50	0.0	0.03	15.16	0.00	2.122	5.02	0.09	1.6	98.4	0.0	4.00	1.07	0.88	0.81	1.43	19523	1159	4	0	0	0	9896	logfile
✔	6ZBG	11154	2022-05-14	2020-06-08	3.2	3.97	3.37	3.6	0.010	1.15	0.0	0.07	13.62	0.01	2.468	1.13	0.00	1.1	98.9	0.0	0.72	0.84	0.78	2.20	3.6	0.002	0.49	0.0	0.03	15.27	0.00	2.144	4.35	0.00	0.8	99.2	0.0	4.36	1.86	0.85	0.79	1.37	19534	1160	4	0	0	0	9902	logfile
✔	7EKM	31170	2022-05-13	2021-04-05	3.6	3.84	—	3.9	0.005	1.19	0.0	0.05	13.13	0.01	2.215	6.11	4.77	6.4	92.9	0.7	-4.90	0.65	0.75	2.32	3.8	0.002	0.68	0.0	0.04	14.92	0.00	2.228	6.60	0.10	4.5	95.4	0.1	-1.99	1.46	0.69	0.82	1.34	9124	1162	2	0	0	0	0	logfile
✔	7EKL	31169	2022-05-13	2021-04-05	3.5	3.66	—	3.6	0.005	1.13	0.0	0.05	10.53	0.01	2.141	5.35	0.81	2.9	96.9	0.2	-5.70	0.72	0.83	3.54	3.6	0.002	0.61	0.0	0.04	14.36	0.00	2.041	6.31	0.10	2.7	97.3	0.0	-0.34	1.51	0.74	0.85	2.10	9394	1180	4	0	4	0	0	logfile

• ← previous
• Page 5 of 376
• next →