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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6MRW | 9214 | 2022-12-12 | 2018-10-15 | 4.3 | 4.76 | — | 4.3 | 0.006 | 0.98 | 0.0 | 0.04 | 10.35 | 0.01 | 2.080 | 4.61 | 0.41 | 2.1 | 97.9 | 0.0 | -0.19 | 0.82 | 0.84 | — | 4.3 | 0.002 | 0.48 | 0.0 | 0.03 | 11.74 | 0.00 | 2.080 | 6.81 | 0.00 | 1.8 | 98.2 | 0.0 | 6.05 | 1.27 | 0.83 | 0.86 | — | 31346 | 3990 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RiN | 4892 | 2022-12-15 | 2019-04-24 | 3.7 | 4.07 | — | 4.0 | 0.009 | 0.99 | 0.0 | 0.06 | 11.25 | 0.01 | 1.995 | 14.03 | 0.07 | 13.6 | 86.3 | 0.0 | -4.38 | 0.83 | 0.84 | 2.21 | 4.0 | 0.002 | 0.67 | 0.0 | 0.05 | 15.18 | 0.00 | 2.059 | 8.05 | 0.24 | 6.0 | 94.0 | 0.0 | -0.62 | 1.33 | 0.83 | 0.85 | 1.64 | 27584 | 3363 | 10 | 59 | 3 | 0 | 0 | logfile |
✔ | 6NHT | 9373 | 2022-12-15 | 2018-12-23 | 2.9 | 3.26 | 3.11 | 3.3 | 0.006 | 0.75 | 0.0 | 0.04 | 15.21 | 0.00 | 2.394 | 2.27 | 0.45 | 2.1 | 97.9 | 0.0 | -5.86 | 0.68 | 0.85 | 2.73 | 3.3 | 0.002 | 0.52 | 0.0 | 0.04 | 17.67 | 0.00 | 2.199 | 3.76 | 1.30 | 1.3 | 98.7 | 0.0 | 1.94 | 1.58 | 0.59 | 0.81 | 2.61 | 26136 | 3432 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oR5 | 9032 | 2022-12-12 | 2019-04-29 | 4.0 | 4.23 | — | 3.9 | 0.008 | 1.12 | 0.0 | 0.05 | 10.85 | 0.00 | 2.245 | 4.84 | 0.00 | 17.3 | 82.4 | 0.3 | -5.53 | 0.76 | 0.79 | — | 3.9 | 0.002 | 0.56 | 0.0 | 0.04 | 7.06 | 0.00 | 2.221 | 3.09 | 0.00 | 12.5 | 87.5 | 0.0 | -0.20 | 1.35 | 0.78 | 0.79 | — | 10364 | 2058 | 1 | 0 | 5 | 0 | 0 | logfile |
✔ | 6RJ9 | 4900 | 2022-12-12 | 2019-04-26 | 3.2 | 3.37 | — | 3.3 | 0.006 | 0.78 | 0.0 | 0.05 | 15.21 | 0.01 | 2.292 | 2.63 | 0.28 | 6.7 | 93.3 | 0.0 | -3.87 | 0.67 | 0.86 | 2.60 | 3.3 | 0.002 | 0.50 | 0.0 | 0.04 | 16.10 | 0.00 | 2.220 | 5.22 | 0.19 | 3.9 | 96.1 | 0.0 | -0.22 | 0.96 | 0.66 | 0.87 | 2.00 | 11874 | 1202 | 5 | 97 | 0 | 0 | 0 | logfile |
✔ | 6G8Z | 4362 | 2022-12-13 | 2018-04-10 | 3.66 | 3.88 | 3.72 | 3.8 | 0.005 | 0.77 | 0.0 | 0.04 | 8.70 | 0.00 | 2.362 | 0.22 | 0.00 | 3.8 | 96.2 | 0.0 | -0.63 | 0.66 | 0.79 | 4.14 | 3.8 | 0.002 | 0.53 | 0.0 | 0.04 | 13.44 | 0.00 | 2.214 | 4.83 | 0.45 | 2.8 | 97.2 | 0.0 | 2.54 | 1.65 | 0.70 | 0.85 | 2.73 | 15966 | 1908 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UZD | 20957 | 2022-12-21 | 2019-11-14 | 3.4 | 3.56 | — | 3.4 | 0.007 | 0.84 | 0.0 | 0.06 | 15.38 | 0.01 | 2.258 | 6.12 | 0.31 | 5.7 | 94.3 | 0.0 | -4.30 | 0.77 | 0.84 | 2.82 | 3.4 | 0.002 | 0.55 | 0.0 | 0.04 | 15.96 | 0.00 | 2.160 | 8.54 | 0.12 | 4.1 | 95.9 | 0.0 | -1.32 | 0.46 | 0.77 | 0.85 | 2.44 | 42822 | 5374 | 16 | 0 | 14 | 0 | 0 | logfile |
✔ | 6UZE | 20958 | 2022-12-21 | 2019-11-15 | 3.4 | 3.54 | — | 3.4 | 0.010 | 0.96 | 3.0 | 0.06 | 15.55 | 0.01 | 2.243 | 7.03 | 0.77 | 7.9 | 92.0 | 0.1 | -4.13 | 0.78 | 0.85 | 2.93 | 3.4 | 0.002 | 0.55 | 0.0 | 0.04 | 16.15 | 0.00 | 2.185 | 9.15 | 0.17 | 4.7 | 95.3 | 0.0 | -1.26 | 0.46 | 0.77 | 0.85 | 2.50 | 42822 | 5374 | 16 | 0 | 14 | 0 | 0 | logfile |
✔ | 6KZP | 0792 | 2022-12-12 | 2019-09-25 | 3.1 | 2.67 | — | 3.1 | 0.013 | 1.45 | 1.0 | 0.08 | 14.32 | 0.01 | 2.390 | 10.56 | 2.44 | 3.3 | 96.4 | 0.3 | -4.53 | 0.59 | 0.81 | 3.72 | 3.1 | 0.002 | 0.59 | 0.0 | 0.04 | 16.27 | 0.00 | 2.267 | 4.94 | 0.00 | 2.4 | 97.6 | 0.0 | 1.47 | 0.69 | 0.59 | 0.83 | 2.40 | 8557 | 1014 | 1 | 0 | 18 | 0 | 0 | logfile |
✔ | 6CoY | 7544 | 2022-12-11 | 2018-03-13 | 3.36 | 3.52 | 3.38 | 3.6 | 0.020 | 1.43 | 0.0 | 0.09 | 10.54 | 0.01 | 2.242 | 2.00 | 0.00 | 2.8 | 96.7 | 0.4 | -0.30 | 0.70 | 0.86 | 2.95 | 3.6 | 0.002 | 0.58 | 0.0 | 0.04 | 13.72 | 0.01 | 2.239 | 6.33 | 0.39 | 2.8 | 97.2 | 0.0 | 3.42 | 1.17 | 0.58 | 0.82 | 1.96 | 7156 | 930 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6V22 | 21025 | 2022-12-19 | 2019-11-22 | 3.2 | 3.50 | — | 3.4 | 0.014 | 1.41 | 0.0 | 0.06 | 17.75 | 0.02 | 2.257 | 5.89 | 0.21 | 4.3 | 95.7 | 0.0 | -3.73 | 0.73 | 0.86 | 3.42 | 3.4 | 0.002 | 0.51 | 0.0 | 0.04 | 15.94 | 0.00 | 2.159 | 7.87 | 0.21 | 3.3 | 96.7 | 0.0 | 0.60 | 1.87 | 0.73 | 0.86 | 2.91 | 37004 | 4380 | 16 | 0 | 100 | 0 | 0 | logfile |
✔ | 6UD4 | 20733 | 2022-12-16 | 2019-09-18 | 3.3 | 3.63 | — | 3.5 | 0.008 | 0.63 | 0.0 | 0.06 | 13.23 | 0.01 | 2.022 | 6.47 | 0.12 | 5.2 | 94.8 | 0.0 | -3.11 | 0.65 | 0.74 | 1.46 | 3.5 | 0.002 | 0.52 | 0.0 | 0.05 | 14.29 | 0.00 | 2.003 | 9.33 | 0.12 | 4.7 | 95.3 | 0.0 | 0.72 | 1.77 | 0.66 | 0.76 | 1.84 | 31642 | 2044 | 15 | 0 | 12 | 0 | 15470 | logfile |
✔ | 6U6i | 20666 | 2022-12-16 | 2019-08-29 | 3.12 | 3.43 | — | 3.4 | 0.006 | 0.45 | 0.0 | 0.07 | 11.24 | 0.00 | 2.029 | 6.16 | 0.00 | 7.6 | 92.4 | 0.0 | -3.59 | 0.80 | 0.80 | 4.39 | 3.3 | 0.002 | 0.46 | 0.0 | 0.04 | 12.85 | 0.00 | 2.083 | 5.80 | 0.00 | 4.8 | 95.2 | 0.0 | 0.06 | 0.50 | 0.81 | 0.82 | 4.01 | 21701 | 1496 | 9 | 0 | 11 | 0 | 10337 | logfile |
✔ | 6BGo | 7098 | 2022-12-22 | 2017-10-29 | 4.2 | 4.71 | — | 4.0 | 0.007 | 0.99 | 0.0 | 0.05 | 12.93 | 0.01 | 1.245 | 13.74 | 1.01 | 3.0 | 96.9 | 0.1 | -0.26 | 0.83 | 0.75 | — | 4.0 | 0.002 | 0.59 | 0.0 | 0.04 | 12.80 | 0.00 | 2.076 | 6.67 | 0.06 | 2.7 | 97.3 | 0.0 | 2.09 | 1.57 | 0.90 | 0.85 | — | 46500 | 6170 | 35 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RDT | 4830 | 2022-12-11 | 2019-04-12 | 3.4 | 3.29 | — | 3.4 | 0.011 | 1.02 | 1.0 | 0.06 | 15.14 | 0.01 | 2.058 | 6.14 | 0.60 | 5.7 | 94.0 | 0.3 | -4.05 | 0.68 | 0.83 | 2.56 | 3.4 | 0.002 | 0.59 | 0.0 | 0.04 | 16.24 | 0.00 | 1.975 | 9.86 | 0.20 | 4.1 | 95.8 | 0.1 | 0.25 | 2.40 | 0.69 | 0.85 | 1.91 | 53748 | 7103 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 6RE5 | 4842 | 2022-12-11 | 2019-04-12 | 3.2 | 3.28 | — | 3.3 | 0.010 | 0.94 | 0.0 | 0.06 | 14.48 | 0.01 | 2.163 | 5.78 | 0.27 | 4.8 | 95.0 | 0.2 | -3.94 | 0.72 | 0.85 | 2.85 | 3.3 | 0.002 | 0.57 | 0.0 | 0.04 | 15.80 | 0.00 | 1.956 | 9.37 | 0.27 | 3.3 | 96.6 | 0.1 | 0.37 | 0.47 | 0.71 | 0.86 | 2.15 | 53720 | 7099 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 6UX4 | 20929 | 2022-12-13 | 2019-11-06 | 3.5 | 3.60 | — | 3.6 | 0.011 | 0.83 | 0.0 | 0.06 | 13.47 | 0.01 | 2.254 | 3.45 | 0.29 | 3.9 | 96.1 | 0.0 | -4.46 | 0.67 | 0.83 | 2.86 | 3.6 | 0.002 | 0.49 | 0.0 | 0.05 | 14.93 | 0.00 | 2.109 | 6.48 | 0.29 | 2.5 | 97.5 | 0.0 | 0.32 | 1.18 | 0.66 | 0.82 | 2.20 | 13257 | 1776 | 19 | 0 | 24 | 3 | 0 | logfile |
✔ | 6VQi | 21351 | 2022-12-11 | 2020-02-05 | 4.3 | 4.89 | — | 4.2 | 0.005 | 1.14 | 0.0 | 0.05 | 3.90 | 0.01 | 2.327 | 1.95 | 0.00 | 1.3 | 98.2 | 0.5 | 2.16 | 0.56 | 0.73 | — | 4.1 | 0.002 | 0.54 | 0.0 | 0.03 | 3.92 | 0.00 | 2.243 | 3.65 | 0.00 | 5.4 | 94.5 | 0.1 | 3.11 | 0.74 | 0.57 | 0.74 | — | 5278 | 1062 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BV1 | 30209 | 2022-12-12 | 2020-04-09 | 2.8 | 2.97 | — | 3.0 | 0.005 | 0.82 | 0.0 | 0.06 | 15.13 | 0.00 | 2.266 | 7.02 | 0.00 | 4.3 | 95.7 | 0.0 | -1.91 | 0.62 | 0.75 | 2.16 | 3.0 | 0.002 | 0.58 | 0.0 | 0.04 | 17.11 | 0.00 | 2.184 | 7.14 | 2.80 | 3.9 | 96.1 | 0.0 | -0.29 | 1.66 | 0.64 | 0.81 | 2.50 | 8799 | 1112 | 5 | 0 | 2 | 0 | 0 | logfile |
✔ | 6X0U | 21984 | 2022-12-11 | 2020-05-17 | 3.6 | 3.62 | — | 3.6 | 0.004 | 0.62 | 0.0 | 0.04 | 14.50 | 0.00 | 2.277 | 5.74 | 0.00 | 3.7 | 96.1 | 0.3 | -5.79 | 0.26 | 0.78 | 1.89 | 3.6 | 0.002 | 0.69 | 0.0 | 0.03 | 17.56 | 0.00 | 2.197 | 6.86 | 0.29 | 2.9 | 97.1 | 0.0 | 1.58 | 0.81 | 0.27 | 0.78 | 2.25 | 3091 | 398 | 4 | 0 | 0 | 0 | 0 | logfile |