Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DD8	27336	2023-04-21	2022-06-17	3.4	3.50	3.43	3.4	0.003	0.60	0.0	0.04	15.62	0.00	2.211	7.34	0.00	4.0	95.9	0.1	-0.65	0.81	0.81	2.33	3.4	0.002	0.53	0.0	0.04	16.75	0.00	2.198	10.21	0.00	4.0	96.0	0.0	0.42	1.22	0.83	0.84	1.99	10492	1272	2	0	0	0	0	logfile
✔	7USW	26741	2023-04-23	2022-04-26	3.1	3.48	3.14	3.5	0.004	0.78	0.0	0.04	15.91	0.01	2.254	7.09	0.21	3.1	96.9	0.0	2.17	0.63	0.80	2.13	3.5	0.002	0.48	0.0	0.04	16.01	0.00	2.249	5.38	0.35	3.2	96.8	0.0	2.29	0.27	0.63	0.82	2.11	14322	1676	12	0	68	0	0	logfile
✔	8Bi0	16075	2023-04-21	2022-11-01	3.2	3.55	3.24	3.5	0.007	0.88	0.0	0.05	11.57	0.00	1.257	2.85	0.20	3.5	96.3	0.2	0.83	0.67	0.85	4.07	3.4	0.002	0.51	0.0	0.04	14.33	0.00	2.032	5.85	0.20	2.1	97.9	0.0	1.95	0.59	0.66	0.88	2.73	9198	1142	4	0	11	0	0	logfile
✔	6DW1	8923	2023-04-20	2018-06-26	3.1	3.36	—	3.3	0.006	0.97	0.0	0.06	9.63	0.01	2.304	4.67	0.00	5.7	94.3	0.0	-3.70	0.68	0.82	4.57	3.3	0.002	0.66	0.0	0.04	14.13	0.00	2.157	8.87	0.22	5.3	94.7	0.0	-1.52	0.99	0.69	0.84	4.14	8595	1046	13	0	24	0	0	logfile
✔	7M3N	23658	2023-04-20	2021-03-18	2.4	2.15	2.40	1.9	0.005	0.63	0.0	0.04	15.95	0.00	2.168	5.79	4.28	4.3	95.6	0.1	-2.53	0.43	0.82	4.98	2.0	0.002	0.55	0.0	0.04	16.96	0.00	2.273	6.81	2.75	3.7	96.3	0.0	-0.46	0.48	0.45	0.84	4.74	6004	759	3	0	0	0	0	logfile
✔	8CRT	26958	2023-04-24	2022-05-11	3.0	2.91	3.16	3.0	0.003	0.58	0.0	0.04	11.34	0.01	2.205	5.06	2.36	1.5	98.5	0.0	1.86	0.51	0.72	2.69	3.0	0.002	0.56	0.0	0.04	14.37	0.00	2.138	8.10	1.36	1.5	98.5	0.0	2.28	0.65	0.51	0.83	2.40	17925	2305	12	0	6	0	0	logfile
✔	7UKJ	26582	2023-04-23	2022-04-01	3.6	4.01	—	3.7	0.003	0.61	0.0	0.05	14.53	0.00	2.183	13.02	1.78	12.8	87.2	0.0	-2.80	0.74	0.85	2.36	3.7	0.002	0.56	0.0	0.05	15.21	0.00	2.241	11.45	1.97	10.7	89.3	0.0	-2.65	1.14	0.73	0.84	2.12	14196	1862	3	0	0	0	0	logfile
✔	7NSH	12567	2023-04-22	2021-03-07	3.2	3.39	3.12	3.3	0.003	0.53	0.0	0.05	15.69	0.00	1.187	7.76	0.02	4.2	95.8	0.1	0.71	0.80	0.84	2.70	3.3	0.002	0.55	0.0	0.04	16.92	0.00	1.115	8.46	0.33	4.0	96.0	0.0	0.81	0.52	0.79	0.89	2.50	112448	9643	79	1611	229	2	0	logfile
✔	7JLV	22381	2023-04-23	2020-07-30	3.8	3.34	—	3.5	0.004	0.85	0.0	0.05	16.61	0.00	2.050	9.62	0.00	7.8	92.2	0.0	-0.91	0.61	0.82	1.74	3.5	0.002	0.57	0.0	0.04	17.51	0.00	1.916	7.64	0.13	8.3	91.7	0.0	-0.47	0.41	0.61	0.82	2.42	14336	1748	8	0	8	0	0	logfile
✔	7PE8	13348	2023-04-29	2021-08-09	3.2	3.51	—	3.4	0.002	0.41	0.0	0.04	8.71	0.00	2.255	4.47	1.65	3.2	96.8	0.0	-0.20	0.79	0.81	2.75	3.4	0.002	0.52	0.0	0.04	12.64	0.00	2.179	7.13	0.40	4.0	96.0	0.0	0.66	0.49	0.80	0.83	1.94	29291	3832	8	0	3	0	0	logfile
✔	7EB3	31050	2023-04-27	2021-03-08	3.6	4.26	—	4.0	0.005	0.66	0.0	0.05	13.63	0.00	2.071	7.88	0.04	6.3	93.6	0.1	-1.11	0.83	0.81	2.19	4.0	0.002	0.60	0.0	0.04	15.08	0.00	2.096	7.15	0.19	4.9	95.1	0.1	-0.70	1.59	0.83	0.80	1.96	24844	3041	36	0	79	0	0	logfile
✔	7EDH	31071	2023-04-26	2021-03-16	3.6	4.18	—	4.0	0.004	0.67	0.0	0.05	13.66	0.00	2.189	7.03	0.16	6.4	93.3	0.3	-1.26	0.80	0.78	2.26	4.0	0.002	0.58	0.0	0.04	15.28	0.00	2.170	6.90	0.20	6.0	93.7	0.3	-0.88	0.36	0.81	0.78	2.11	23276	2846	36	0	77	0	0	logfile
✔	7V4H	31711	2023-04-28	2021-08-13	2.9	3.14	—	3.2	0.004	0.59	0.0	0.05	13.65	0.01	2.083	7.28	0.00	3.6	96.4	0.0	-1.11	0.67	0.81	3.76	3.2	0.002	0.52	0.0	0.04	15.69	0.00	2.141	6.83	1.90	3.1	96.9	0.0	-0.05	0.31	0.57	0.79	3.45	27340	3520	10	0	0	0	0	logfile
✔	8FMA	29290	2023-04-27	2022-12-22	3.1	3.42	3.39	3.4	0.002	0.48	0.0	0.04	11.37	0.00	1.426	7.73	0.00	2.7	97.3	0.0	1.06	0.53	0.72	2.38	3.4	0.002	0.52	0.0	0.04	13.95	0.00	2.056	6.66	0.18	2.7	97.3	0.0	2.05	1.15	0.60	0.80	2.36	72974	7227	22	0	0	0	28633	logfile
✔	7KS9	23016	2023-04-27	2020-11-21	4.75	5.64	4.96	4.9	0.005	0.80	0.0	0.05	11.85	0.01	2.222	3.57	0.07	1.9	98.1	0.0	-0.64	0.82	0.74	—	4.8	0.002	0.60	0.0	0.04	12.09	0.00	2.090	11.72	0.00	3.0	97.0	0.0	0.26	0.70	0.84	0.79	—	25380	3189	20	0	59	0	0	logfile
✔	7UQK	26697	2023-04-29	2022-04-19	3.1	2.64	3.08	3.1	0.005	0.94	1.0	0.05	16.27	0.01	2.262	5.84	0.37	7.6	92.3	0.1	-4.31	0.61	0.76	2.39	3.0	0.002	0.61	0.0	0.04	17.32	0.00	2.164	9.20	0.18	5.6	94.4	0.0	-0.19	1.08	0.66	0.82	1.82	29142	3631	12	0	5	0	0	logfile
✔	6S7o	10110	2023-04-24	2019-07-05	3.5	3.68	—	3.7	0.032	1.27	0.0	0.15	13.31	0.00	2.232	15.62	1.47	5.7	94.1	0.2	-1.66	0.72	0.85	2.98	3.7	0.002	0.59	0.0	0.04	15.19	0.00	2.169	12.30	0.44	5.5	94.4	0.0	0.46	1.98	0.69	0.86	2.81	18118	2197	17	0	38	0	0	logfile
✔	6U5N	20650	2023-04-22	2019-08-28	3.2	3.32	—	3.3	0.006	0.76	0.0	0.05	14.13	0.01	1.907	2.80	0.15	4.8	95.2	0.0	-3.09	0.72	0.84	2.62	3.3	0.002	0.46	0.0	0.05	15.73	0.00	2.145	5.34	0.44	2.3	97.7	0.0	0.97	1.21	0.67	0.84	2.00	13262	1776	24	0	24	8	0	logfile
✔	7TT1	26107	2023-04-25	2022-01-31	4.3	4.56	—	4.4	0.004	0.82	0.0	0.05	10.41	0.00	1.973	3.78	0.00	1.3	98.7	0.0	0.92	0.72	0.72	—	4.4	0.002	0.60	0.0	0.04	12.79	0.00	1.974	9.71	0.00	2.9	97.1	0.0	0.01	1.54	0.72	0.75	—	20398	1329	6	0	0	0	10005	logfile
✔	6SYT	10347	2023-04-24	2019-10-01	3.45	3.54	—	3.5	0.018	1.23	0.0	0.16	9.36	0.01	1.903	3.04	0.13	7.5	92.4	0.1	-5.37	0.69	0.81	4.11	3.5	0.002	0.61	0.0	0.04	13.84	0.00	2.001	5.33	0.31	3.3	96.7	0.0	0.84	0.64	0.71	0.85	2.64	18369	2369	5	0	216	0	0	logfile

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