Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JPo	22417	2022-12-13	2020-08-09	3.2	2.55	—	3.2	0.007	1.09	0.0	0.06	15.53	0.01	2.073	2.48	0.00	3.0	97.0	0.0	-1.99	0.79	0.81	2.74	3.2	0.002	0.53	0.0	0.04	16.89	0.00	1.950	5.43	0.17	2.2	97.8	0.0	0.79	0.45	0.80	0.83	1.90	16087	1966	9	0	7	0	0	logfile
✔	6L3V	0827	2022-12-14	2019-10-15	2.63	2.90	2.72	2.9	0.009	0.92	0.0	0.04	17.16	0.01	2.218	1.00	5.45	0.5	99.5	0.0	-5.00	0.57	0.85	3.54	2.9	0.002	0.58	0.0	0.03	16.60	0.00	2.191	1.81	1.72	0.5	99.5	0.0	2.35	3.59	0.58	0.87	2.87	19416	1206	12	0	6	0	9528	logfile
✔	6V3F	21035	2022-12-12	2019-11-25	3.7	3.81	—	3.7	0.006	1.16	0.0	0.07	11.29	0.01	2.285	2.23	1.04	2.4	97.3	0.2	1.13	0.68	0.85	2.46	3.7	0.002	0.63	0.0	0.04	13.88	0.00	2.173	5.89	0.09	2.9	97.0	0.1	1.03	1.02	0.68	0.85	2.04	9855	1234	6	0	19	0	0	logfile
✔	6TAX	10429	2022-12-19	2019-10-31	3.2	2.63	—	1.9	0.009	1.13	0.0	0.06	11.18	0.01	2.065	5.52	0.46	9.5	90.3	0.2	-4.10	0.88	0.80	3.18	1.9	0.002	0.67	0.0	0.04	13.73	0.00	2.032	10.32	0.23	8.0	92.0	0.0	-0.17	1.60	0.88	0.81	2.02	35235	4349	1	0	71	0	0	logfile
✔	6MRC	9195	2022-12-14	2018-10-12	3.08	3.40	—	3.4	0.007	0.81	0.0	0.07	10.51	0.00	1.988	27.58	0.18	7.5	92.3	0.2	-2.93	0.81	0.83	3.65	3.3	0.002	0.58	0.0	0.07	13.86	0.00	1.908	37.07	0.08	5.5	94.4	0.1	0.85	0.64	0.81	0.85	3.17	69132	8792	56	0	28	98	2954	logfile
✔	6VKS	21228	2022-12-15	2020-01-22	3.02	3.41	—	3.4	0.006	0.89	0.0	0.05	15.02	0.01	1.946	8.75	0.00	3.2	96.8	0.0	-3.88	0.74	0.79	2.05	3.4	0.002	0.56	0.0	0.04	15.27	0.00	2.157	7.55	0.40	2.9	97.1	0.0	0.63	1.66	0.75	0.84	2.17	24034	3131	6	0	18	0	0	logfile
✔	6PB0	20284	2022-12-12	2019-06-12	3.0	3.47	—	3.5	0.004	0.82	0.0	0.06	9.19	0.01	2.277	4.29	0.22	2.6	97.4	0.0	-2.85	0.58	0.75	2.87	3.5	0.002	0.52	0.0	0.04	14.42	0.00	2.155	7.56	2.48	2.2	97.8	0.0	0.79	2.15	0.56	0.77	1.77	8827	1068	7	0	12	0	0	logfile
✔	5TCQ	8399	2022-12-20	2016-09-15	3.6	3.82	—	3.7	0.013	1.54	0.0	0.06	8.28	0.01	2.447	2.37	0.00	3.3	94.0	2.7	-0.03	0.80	0.79	2.33	3.7	0.002	0.62	0.0	0.04	11.95	0.00	2.185	6.63	0.23	3.0	97.0	0.0	1.09	0.73	0.83	0.86	2.25	39180	5040	15	0	0	0	0	logfile
✔	6NT5	0502	2022-12-11	2019-01-28	4.1	4.28	—	4.1	0.006	0.93	0.0	0.05	10.32	0.01	2.300	3.81	0.41	4.7	95.3	0.0	-2.40	0.73	0.82	—	4.1	0.002	0.57	0.0	0.04	12.52	0.00	2.325	7.08	0.00	2.0	98.0	0.0	1.95	1.16	0.73	0.81	—	4586	584	2	0	0	0	0	logfile
✔	6PWN	20508	2022-12-13	2019-07-23	3.1	3.65	2.95	3.4	0.008	0.86	0.0	0.04	14.34	0.00	2.276	8.66	0.44	3.5	96.5	0.0	-2.16	0.80	0.84	2.55	3.4	0.002	0.58	0.0	0.04	15.27	0.00	2.270	6.93	0.13	3.2	96.8	0.0	1.47	1.21	0.81	0.85	1.95	15379	1960	14	0	14	0	0	logfile
✔	6PKW	20368	2022-12-15	2019-06-30	4.5	4.77	—	4.4	0.007	0.94	0.0	0.05	9.19	0.01	2.239	4.19	0.00	5.8	94.2	0.0	-3.48	0.66	0.78	—	4.4	0.002	0.56	0.0	0.04	9.69	0.00	2.250	6.67	0.00	4.4	95.6	0.0	2.10	1.62	0.67	0.79	—	26262	4056	4	0	88	0	0	logfile
✔	6oT2	20192	2022-12-16	2019-05-02	4.1	4.25	4.02	4.1	0.009	0.87	0.0	0.05	8.41	0.01	2.066	6.19	0.00	7.3	92.7	0.0	-2.26	0.71	0.76	—	4.1	0.002	0.52	0.0	0.03	10.42	0.00	2.135	7.27	0.00	5.1	94.9	0.0	1.85	1.72	0.71	0.76	—	32311	2444	4	0	56	0	14975	logfile
✔	6E1o	8959	2022-12-12	2018-07-10	3.59	3.70	—	3.7	0.008	1.21	0.0	0.06	11.66	0.01	2.219	4.62	0.78	6.9	93.1	0.0	-5.85	0.66	0.83	2.30	3.7	0.002	0.65	0.0	0.04	14.83	0.00	2.143	7.11	0.29	4.8	95.2	0.0	-0.49	0.84	0.67	0.83	0.91	9784	1182	4	0	18	0	0	logfile
✔	6NR4	0489	2022-12-15	2019-01-22	4.3	4.39	4.24	4.3	0.006	0.93	0.0	0.05	9.96	0.01	2.319	3.34	0.39	4.7	95.3	0.0	-3.24	0.60	0.77	—	4.3	0.002	0.58	0.0	0.04	11.84	0.00	2.250	7.43	0.00	3.7	96.3	0.0	2.39	0.79	0.61	0.78	—	23264	3036	4	0	180	0	0	logfile
✔	6DMR	7965	2022-12-14	2018-06-05	3.9	4.25	—	4.2	0.005	0.91	0.0	0.05	10.34	0.01	2.280	3.77	0.00	4.2	95.8	0.0	-4.22	0.62	0.70	1.82	4.1	0.002	0.62	0.0	0.04	14.97	0.00	2.278	6.88	0.10	3.1	96.9	0.0	-0.45	1.74	0.75	0.87	1.48	19412	2424	4	0	0	0	0	logfile
✔	6oGZ	20060	2022-12-15	2019-04-03	3.6	3.85	—	3.8	0.008	0.90	0.0	0.06	15.78	0.01	2.244	5.41	0.17	4.2	95.8	0.0	-5.51	0.47	0.86	2.42	3.8	0.002	0.58	0.0	0.04	17.31	0.00	2.010	8.88	0.50	2.8	97.2	0.0	-1.76	1.43	0.45	0.85	1.67	74962	9081	14	35	2	0	0	logfile
✔	6MRU	9213	2022-12-12	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.002	0.46	0.0	0.03	13.26	0.00	2.192	3.53	0.00	0.6	99.4	0.0	5.66	3.08	0.75	0.86	1.81	29107	3705	13	0	0	0	0	logfile
✔	6MRW	9214	2022-12-12	2018-10-15	4.3	4.76	—	4.3	0.006	0.98	0.0	0.04	10.35	0.01	2.080	4.61	0.41	2.1	97.9	0.0	-0.19	0.82	0.84	—	4.3	0.002	0.48	0.0	0.03	11.74	0.00	2.080	6.81	0.00	1.8	98.2	0.0	6.05	1.27	0.83	0.86	—	31346	3990	14	0	0	0	0	logfile
✔	6XF6	22162	2022-12-14	2020-06-15	4.0	4.88	4.07	4.1	0.004	0.77	0.0	0.06	11.35	0.01	2.249	3.78	0.21	2.6	97.4	0.0	0.03	0.85	0.78	—	4.2	0.002	0.58	0.0	0.04	12.73	0.00	2.109	10.16	0.09	2.9	97.1	0.0	0.50	1.22	0.87	0.83	—	22938	2928	18	0	59	0	0	logfile
✔	6WWZ	21950	2022-12-12	2020-05-09	3.34	3.53	—	3.5	0.014	1.77	0.0	0.09	13.13	0.00	2.318	2.17	0.10	4.4	95.6	0.0	-3.33	0.56	0.77	2.93	3.5	0.002	0.57	0.0	0.04	15.24	0.00	2.184	2.92	0.39	2.8	97.2	0.0	0.36	1.06	0.71	0.86	2.63	9450	1211	6	0	0	0	0	logfile

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