Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VGX	31979	2023-04-22	2021-09-19	3.2	2.32	—	3.3	0.004	0.67	0.0	0.05	12.58	0.00	2.255	5.84	0.00	3.1	96.9	0.0	0.12	0.76	0.79	3.49	3.3	0.002	0.52	0.0	0.04	15.22	0.00	2.267	4.56	0.30	2.0	98.0	0.0	0.60	0.99	0.77	0.82	3.02	9044	1149	6	0	0	0	0	logfile
✔	7UHC	26512	2023-04-26	2022-03-26	3.1	3.68	3.18	3.5	0.010	1.33	0.0	0.08	9.98	0.00	2.551	0.55	0.31	2.6	97.3	0.1	0.29	0.79	0.80	4.24	3.5	0.002	0.55	0.0	0.04	12.87	0.00	2.172	3.26	0.05	1.9	98.1	0.0	1.33	0.56	0.75	0.80	3.90	23136	3192	21	0	60	0	0	logfile
✔	7X1W	32951	2023-04-21	2022-02-24	3.3	3.45	—	3.4	0.007	0.76	0.0	0.04	14.72	0.00	2.163	7.80	0.00	6.5	93.5	0.0	-0.77	0.64	0.83	2.49	3.4	0.002	0.55	0.0	0.04	16.01	0.00	2.277	7.64	0.10	5.2	94.8	0.0	0.37	1.90	0.63	0.84	1.87	9315	1159	4	0	2	0	0	logfile
✔	8CVN	27010	2023-04-20	2022-05-18	2.4	3.23	2.42	3.1	0.014	1.53	3.0	0.08	17.97	0.00	2.524	1.49	1.21	2.4	97.6	0.0	0.60	0.84	0.87	3.98	3.1	0.002	0.82	0.0	0.04	18.09	0.00	2.305	2.98	2.17	1.6	98.4	0.0	1.58	0.81	0.76	0.87	3.33	4054	512	4	0	4	0	0	logfile
✔	7XTZ	33453	2023-04-19	2022-05-18	2.8	2.99	2.73	2.9	0.012	0.90	0.0	0.05	13.57	0.00	2.204	0.77	0.42	3.2	96.8	0.0	-0.29	0.83	0.84	4.09	2.9	0.002	0.48	0.0	0.04	14.33	0.00	2.060	2.70	0.70	3.1	96.9	0.0	0.02	0.30	0.83	0.86	3.72	51900	3291	21	0	75	0	25032	logfile
✔	7WAF	32384	2023-04-27	2021-12-14	2.52	2.97	2.47	2.8	0.003	0.58	0.0	0.05	13.61	0.00	1.339	7.48	0.11	3.7	96.3	0.1	0.15	0.80	0.87	3.60	2.8	0.002	0.52	0.0	0.04	15.40	0.00	1.948	7.32	1.15	3.3	96.6	0.1	0.37	0.91	0.80	0.90	3.30	24842	3226	16	0	20	0	0	logfile
✔	7WSW	32769	2023-04-23	2022-02-02	3.4	3.86	—	3.7	0.003	0.55	0.0	0.04	13.09	0.00	2.149	6.77	0.00	5.5	94.5	0.0	0.70	0.64	0.84	2.21	3.7	0.002	0.52	0.0	0.04	14.68	0.00	2.176	7.23	0.13	4.7	95.3	0.0	0.89	1.12	0.65	0.85	1.77	15051	1868	8	0	7	0	0	logfile
✔	7CN1	30413	2023-04-20	2020-07-29	3.7	3.74	—	3.7	0.008	0.78	0.0	0.05	13.72	0.00	2.147	16.07	0.32	10.2	89.8	0.0	-3.65	0.47	0.79	1.71	3.7	0.002	0.60	0.0	0.04	15.22	0.00	2.206	8.47	0.32	5.1	94.9	0.0	0.32	0.61	0.48	0.75	1.56	6290	822	6	0	3	0	0	logfile
✔	8DTi	27699	2023-04-21	2022-07-25	3.8	3.87	—	3.8	0.006	0.66	0.0	0.04	13.31	0.00	2.196	4.70	0.00	2.9	97.1	0.0	1.82	0.81	0.76	2.21	3.8	0.002	0.55	0.0	0.04	15.22	0.00	2.204	8.20	0.43	2.3	97.7	0.0	1.89	0.40	0.82	0.79	2.07	9455	1258	4	0	2	0	0	logfile
✔	8AE1	15378	2023-04-25	2022-07-12	3.25	3.42	3.19	3.3	0.002	0.47	0.0	0.04	12.79	0.00	2.165	3.58	0.00	2.7	97.3	0.0	-1.01	0.77	0.87	4.39	3.3	0.002	0.52	0.0	0.04	13.95	0.00	2.185	4.54	0.05	2.8	97.2	0.0	-0.28	0.28	0.77	0.88	3.48	21504	2859	6	0	18	0	0	logfile
✔	7V7F	31769	2023-04-27	2021-08-21	2.9	3.82	—	3.2	0.005	0.63	0.0	0.05	13.68	0.00	2.061	7.26	0.00	5.1	94.7	0.1	-0.13	0.88	0.86	2.44	3.2	0.002	0.55	0.0	0.05	15.10	0.00	2.104	6.88	1.25	4.4	95.5	0.1	0.03	0.27	0.89	0.87	2.22	25503	3114	42	0	84	0	0	logfile
✔	7L2S	23139	2023-04-25	2020-12-17	2.71	3.03	2.68	3.0	0.007	0.95	0.0	0.25	12.59	0.00	2.157	0.85	0.68	6.0	93.9	0.0	0.35	0.65	0.89	4.03	3.0	0.002	0.58	0.0	0.04	14.77	0.00	2.152	3.85	1.35	6.1	93.9	0.0	1.17	1.00	0.62	0.89	2.71	20579	2506	8	0	9	0	0	logfile
✔	7JPQ	22419	2023-04-23	2020-08-09	3.5	3.56	—	3.5	0.008	1.14	0.0	0.06	14.27	0.01	2.088	2.16	0.00	3.0	97.0	0.0	-2.05	0.71	0.81	2.78	3.5	0.002	0.50	0.0	0.04	15.97	0.00	1.994	4.50	0.19	2.7	97.3	0.0	0.69	0.56	0.72	0.82	1.89	13863	1691	6	0	4	0	0	logfile
✔	7TVZ	26142	2023-04-24	2022-02-06	3.6	3.77	—	3.8	0.005	0.61	0.0	0.04	13.96	0.00	2.203	4.11	0.00	2.8	97.2	0.0	0.35	0.68	0.75	2.02	3.8	0.002	0.57	0.0	0.04	15.84	0.00	2.180	5.91	0.20	2.5	97.5	0.0	0.51	2.30	0.71	0.79	1.98	18659	2340	7	0	9	8	0	logfile
✔	7UB0	26433	2023-04-27	2022-03-14	3.31	3.57	3.27	3.4	0.003	0.51	0.0	0.04	13.20	0.00	2.205	4.98	0.04	2.0	98.0	0.0	-0.12	0.85	0.86	3.45	3.4	0.002	0.45	0.0	0.04	14.11	0.00	2.193	4.96	0.07	2.1	97.9	0.0	0.59	0.22	0.86	0.87	3.21	24993	3109	16	0	50	0	0	logfile
✔	7L0L	23098	2023-04-24	2020-12-11	2.85	2.42	2.89	3.2	0.003	0.52	0.0	0.04	13.13	0.00	2.198	3.31	0.05	2.7	97.3	0.0	0.68	0.71	0.79	3.88	3.2	0.002	0.52	0.0	0.04	15.86	0.00	2.196	5.24	1.18	2.1	97.9	0.0	0.91	1.15	0.72	0.81	3.62	17211	2166	18	0	15	0	0	logfile
✔	8ASD	15614	2023-04-23	2022-08-19	2.6	2.22	2.62	2.4	0.006	0.65	0.0	0.04	13.76	0.01	2.030	3.99	0.06	3.6	96.4	0.0	-0.27	0.64	0.84	4.06	2.4	0.002	0.49	0.0	0.04	16.15	0.00	2.002	6.02	0.68	3.4	96.6	0.0	0.69	0.31	0.65	0.86	3.69	15531	1826	9	44	4	32	0	logfile
✔	6SZV	10355	2023-04-23	2019-10-02	2.5	2.59	2.51	2.6	0.005	0.62	0.0	0.04	13.15	0.01	1.763	3.79	3.65	4.6	95.3	0.1	-2.79	0.68	0.85	4.62	2.6	0.002	0.52	0.0	0.04	16.38	0.00	1.932	6.71	2.06	1.6	98.4	0.0	1.00	0.56	0.71	0.89	4.44	14847	1694	15	41	7	217	0	logfile
✔	6XHJ	22187	2023-04-21	2020-06-18	3.62	4.10	—	4.0	0.014	1.38	18.0	0.08	13.47	0.01	2.225	3.12	0.00	3.5	96.5	0.0	-2.59	0.61	0.53	0.86	4.0	0.002	0.63	0.0	0.04	15.79	0.00	2.079	4.93	0.20	1.4	98.6	0.0	0.51	2.45	0.75	0.75	1.05	60624	8514	18	0	36	0	0	logfile
✔	7R6K	24280	2023-04-25	2021-06-22	3.17	3.23	3.15	3.2	0.003	0.52	0.0	0.04	14.70	0.00	2.200	8.68	0.00	4.3	95.7	0.0	0.58	0.73	0.79	2.37	3.2	0.002	0.50	0.0	0.03	15.88	0.00	2.182	7.38	0.16	4.5	95.5	0.0	1.36	0.41	0.73	0.81	2.16	20543	2153	16	152	0	0	0	logfile

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