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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7JPo | 22417 | 2022-12-13 | 2020-08-09 | 3.2 | 2.55 | — | 3.2 | 0.007 | 1.09 | 0.0 | 0.06 | 15.53 | 0.01 | 2.073 | 2.48 | 0.00 | 3.0 | 97.0 | 0.0 | -1.99 | 0.79 | 0.81 | 2.74 | 3.2 | 0.002 | 0.53 | 0.0 | 0.04 | 16.89 | 0.00 | 1.950 | 5.43 | 0.17 | 2.2 | 97.8 | 0.0 | 0.79 | 0.45 | 0.80 | 0.83 | 1.90 | 16087 | 1966 | 9 | 0 | 7 | 0 | 0 | logfile |
✔ | 6L3V | 0827 | 2022-12-14 | 2019-10-15 | 2.63 | 2.90 | 2.72 | 2.9 | 0.009 | 0.92 | 0.0 | 0.04 | 17.16 | 0.01 | 2.218 | 1.00 | 5.45 | 0.5 | 99.5 | 0.0 | -5.00 | 0.57 | 0.85 | 3.54 | 2.9 | 0.002 | 0.58 | 0.0 | 0.03 | 16.60 | 0.00 | 2.191 | 1.81 | 1.72 | 0.5 | 99.5 | 0.0 | 2.35 | 3.59 | 0.58 | 0.87 | 2.87 | 19416 | 1206 | 12 | 0 | 6 | 0 | 9528 | logfile |
✔ | 6V3F | 21035 | 2022-12-12 | 2019-11-25 | 3.7 | 3.81 | — | 3.7 | 0.006 | 1.16 | 0.0 | 0.07 | 11.29 | 0.01 | 2.285 | 2.23 | 1.04 | 2.4 | 97.3 | 0.2 | 1.13 | 0.68 | 0.85 | 2.46 | 3.7 | 0.002 | 0.63 | 0.0 | 0.04 | 13.88 | 0.00 | 2.173 | 5.89 | 0.09 | 2.9 | 97.0 | 0.1 | 1.03 | 1.02 | 0.68 | 0.85 | 2.04 | 9855 | 1234 | 6 | 0 | 19 | 0 | 0 | logfile |
✔ | 6TAX | 10429 | 2022-12-19 | 2019-10-31 | 3.2 | 2.63 | — | 1.9 | 0.009 | 1.13 | 0.0 | 0.06 | 11.18 | 0.01 | 2.065 | 5.52 | 0.46 | 9.5 | 90.3 | 0.2 | -4.10 | 0.88 | 0.80 | 3.18 | 1.9 | 0.002 | 0.67 | 0.0 | 0.04 | 13.73 | 0.00 | 2.032 | 10.32 | 0.23 | 8.0 | 92.0 | 0.0 | -0.17 | 1.60 | 0.88 | 0.81 | 2.02 | 35235 | 4349 | 1 | 0 | 71 | 0 | 0 | logfile |
✔ | 6MRC | 9195 | 2022-12-14 | 2018-10-12 | 3.08 | 3.40 | — | 3.4 | 0.007 | 0.81 | 0.0 | 0.07 | 10.51 | 0.00 | 1.988 | 27.58 | 0.18 | 7.5 | 92.3 | 0.2 | -2.93 | 0.81 | 0.83 | 3.65 | 3.3 | 0.002 | 0.58 | 0.0 | 0.07 | 13.86 | 0.00 | 1.908 | 37.07 | 0.08 | 5.5 | 94.4 | 0.1 | 0.85 | 0.64 | 0.81 | 0.85 | 3.17 | 69132 | 8792 | 56 | 0 | 28 | 98 | 2954 | logfile |
✔ | 6VKS | 21228 | 2022-12-15 | 2020-01-22 | 3.02 | 3.41 | — | 3.4 | 0.006 | 0.89 | 0.0 | 0.05 | 15.02 | 0.01 | 1.946 | 8.75 | 0.00 | 3.2 | 96.8 | 0.0 | -3.88 | 0.74 | 0.79 | 2.05 | 3.4 | 0.002 | 0.56 | 0.0 | 0.04 | 15.27 | 0.00 | 2.157 | 7.55 | 0.40 | 2.9 | 97.1 | 0.0 | 0.63 | 1.66 | 0.75 | 0.84 | 2.17 | 24034 | 3131 | 6 | 0 | 18 | 0 | 0 | logfile |
✔ | 6PB0 | 20284 | 2022-12-12 | 2019-06-12 | 3.0 | 3.47 | — | 3.5 | 0.004 | 0.82 | 0.0 | 0.06 | 9.19 | 0.01 | 2.277 | 4.29 | 0.22 | 2.6 | 97.4 | 0.0 | -2.85 | 0.58 | 0.75 | 2.87 | 3.5 | 0.002 | 0.52 | 0.0 | 0.04 | 14.42 | 0.00 | 2.155 | 7.56 | 2.48 | 2.2 | 97.8 | 0.0 | 0.79 | 2.15 | 0.56 | 0.77 | 1.77 | 8827 | 1068 | 7 | 0 | 12 | 0 | 0 | logfile |
✔ | 5TCQ | 8399 | 2022-12-20 | 2016-09-15 | 3.6 | 3.82 | — | 3.7 | 0.013 | 1.54 | 0.0 | 0.06 | 8.28 | 0.01 | 2.447 | 2.37 | 0.00 | 3.3 | 94.0 | 2.7 | -0.03 | 0.80 | 0.79 | 2.33 | 3.7 | 0.002 | 0.62 | 0.0 | 0.04 | 11.95 | 0.00 | 2.185 | 6.63 | 0.23 | 3.0 | 97.0 | 0.0 | 1.09 | 0.73 | 0.83 | 0.86 | 2.25 | 39180 | 5040 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NT5 | 0502 | 2022-12-11 | 2019-01-28 | 4.1 | 4.28 | — | 4.1 | 0.006 | 0.93 | 0.0 | 0.05 | 10.32 | 0.01 | 2.300 | 3.81 | 0.41 | 4.7 | 95.3 | 0.0 | -2.40 | 0.73 | 0.82 | — | 4.1 | 0.002 | 0.57 | 0.0 | 0.04 | 12.52 | 0.00 | 2.325 | 7.08 | 0.00 | 2.0 | 98.0 | 0.0 | 1.95 | 1.16 | 0.73 | 0.81 | — | 4586 | 584 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PWN | 20508 | 2022-12-13 | 2019-07-23 | 3.1 | 3.65 | 2.95 | 3.4 | 0.008 | 0.86 | 0.0 | 0.04 | 14.34 | 0.00 | 2.276 | 8.66 | 0.44 | 3.5 | 96.5 | 0.0 | -2.16 | 0.80 | 0.84 | 2.55 | 3.4 | 0.002 | 0.58 | 0.0 | 0.04 | 15.27 | 0.00 | 2.270 | 6.93 | 0.13 | 3.2 | 96.8 | 0.0 | 1.47 | 1.21 | 0.81 | 0.85 | 1.95 | 15379 | 1960 | 14 | 0 | 14 | 0 | 0 | logfile |
✔ | 6PKW | 20368 | 2022-12-15 | 2019-06-30 | 4.5 | 4.77 | — | 4.4 | 0.007 | 0.94 | 0.0 | 0.05 | 9.19 | 0.01 | 2.239 | 4.19 | 0.00 | 5.8 | 94.2 | 0.0 | -3.48 | 0.66 | 0.78 | — | 4.4 | 0.002 | 0.56 | 0.0 | 0.04 | 9.69 | 0.00 | 2.250 | 6.67 | 0.00 | 4.4 | 95.6 | 0.0 | 2.10 | 1.62 | 0.67 | 0.79 | — | 26262 | 4056 | 4 | 0 | 88 | 0 | 0 | logfile |
✔ | 6oT2 | 20192 | 2022-12-16 | 2019-05-02 | 4.1 | 4.25 | 4.02 | 4.1 | 0.009 | 0.87 | 0.0 | 0.05 | 8.41 | 0.01 | 2.066 | 6.19 | 0.00 | 7.3 | 92.7 | 0.0 | -2.26 | 0.71 | 0.76 | — | 4.1 | 0.002 | 0.52 | 0.0 | 0.03 | 10.42 | 0.00 | 2.135 | 7.27 | 0.00 | 5.1 | 94.9 | 0.0 | 1.85 | 1.72 | 0.71 | 0.76 | — | 32311 | 2444 | 4 | 0 | 56 | 0 | 14975 | logfile |
✔ | 6E1o | 8959 | 2022-12-12 | 2018-07-10 | 3.59 | 3.70 | — | 3.7 | 0.008 | 1.21 | 0.0 | 0.06 | 11.66 | 0.01 | 2.219 | 4.62 | 0.78 | 6.9 | 93.1 | 0.0 | -5.85 | 0.66 | 0.83 | 2.30 | 3.7 | 0.002 | 0.65 | 0.0 | 0.04 | 14.83 | 0.00 | 2.143 | 7.11 | 0.29 | 4.8 | 95.2 | 0.0 | -0.49 | 0.84 | 0.67 | 0.83 | 0.91 | 9784 | 1182 | 4 | 0 | 18 | 0 | 0 | logfile |
✔ | 6NR4 | 0489 | 2022-12-15 | 2019-01-22 | 4.3 | 4.39 | 4.24 | 4.3 | 0.006 | 0.93 | 0.0 | 0.05 | 9.96 | 0.01 | 2.319 | 3.34 | 0.39 | 4.7 | 95.3 | 0.0 | -3.24 | 0.60 | 0.77 | — | 4.3 | 0.002 | 0.58 | 0.0 | 0.04 | 11.84 | 0.00 | 2.250 | 7.43 | 0.00 | 3.7 | 96.3 | 0.0 | 2.39 | 0.79 | 0.61 | 0.78 | — | 23264 | 3036 | 4 | 0 | 180 | 0 | 0 | logfile |
✔ | 6DMR | 7965 | 2022-12-14 | 2018-06-05 | 3.9 | 4.25 | — | 4.2 | 0.005 | 0.91 | 0.0 | 0.05 | 10.34 | 0.01 | 2.280 | 3.77 | 0.00 | 4.2 | 95.8 | 0.0 | -4.22 | 0.62 | 0.70 | 1.82 | 4.1 | 0.002 | 0.62 | 0.0 | 0.04 | 14.97 | 0.00 | 2.278 | 6.88 | 0.10 | 3.1 | 96.9 | 0.0 | -0.45 | 1.74 | 0.75 | 0.87 | 1.48 | 19412 | 2424 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oGZ | 20060 | 2022-12-15 | 2019-04-03 | 3.6 | 3.85 | — | 3.8 | 0.008 | 0.90 | 0.0 | 0.06 | 15.78 | 0.01 | 2.244 | 5.41 | 0.17 | 4.2 | 95.8 | 0.0 | -5.51 | 0.47 | 0.86 | 2.42 | 3.8 | 0.002 | 0.58 | 0.0 | 0.04 | 17.31 | 0.00 | 2.010 | 8.88 | 0.50 | 2.8 | 97.2 | 0.0 | -1.76 | 1.43 | 0.45 | 0.85 | 1.67 | 74962 | 9081 | 14 | 35 | 2 | 0 | 0 | logfile |
✔ | 6MRU | 9213 | 2022-12-12 | 2018-10-15 | 3.2 | 3.31 | — | 3.3 | 0.005 | 0.73 | 0.0 | 0.04 | 10.16 | 0.01 | 2.297 | 2.27 | 0.82 | 1.4 | 98.6 | 0.0 | -1.59 | 0.72 | 0.83 | 3.34 | 3.3 | 0.002 | 0.46 | 0.0 | 0.03 | 13.26 | 0.00 | 2.192 | 3.53 | 0.00 | 0.6 | 99.4 | 0.0 | 5.66 | 3.08 | 0.75 | 0.86 | 1.81 | 29107 | 3705 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MRW | 9214 | 2022-12-12 | 2018-10-15 | 4.3 | 4.76 | — | 4.3 | 0.006 | 0.98 | 0.0 | 0.04 | 10.35 | 0.01 | 2.080 | 4.61 | 0.41 | 2.1 | 97.9 | 0.0 | -0.19 | 0.82 | 0.84 | — | 4.3 | 0.002 | 0.48 | 0.0 | 0.03 | 11.74 | 0.00 | 2.080 | 6.81 | 0.00 | 1.8 | 98.2 | 0.0 | 6.05 | 1.27 | 0.83 | 0.86 | — | 31346 | 3990 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XF6 | 22162 | 2022-12-14 | 2020-06-15 | 4.0 | 4.88 | 4.07 | 4.1 | 0.004 | 0.77 | 0.0 | 0.06 | 11.35 | 0.01 | 2.249 | 3.78 | 0.21 | 2.6 | 97.4 | 0.0 | 0.03 | 0.85 | 0.78 | — | 4.2 | 0.002 | 0.58 | 0.0 | 0.04 | 12.73 | 0.00 | 2.109 | 10.16 | 0.09 | 2.9 | 97.1 | 0.0 | 0.50 | 1.22 | 0.87 | 0.83 | — | 22938 | 2928 | 18 | 0 | 59 | 0 | 0 | logfile |
✔ | 6WWZ | 21950 | 2022-12-12 | 2020-05-09 | 3.34 | 3.53 | — | 3.5 | 0.014 | 1.77 | 0.0 | 0.09 | 13.13 | 0.00 | 2.318 | 2.17 | 0.10 | 4.4 | 95.6 | 0.0 | -3.33 | 0.56 | 0.77 | 2.93 | 3.5 | 0.002 | 0.57 | 0.0 | 0.04 | 15.24 | 0.00 | 2.184 | 2.92 | 0.39 | 2.8 | 97.2 | 0.0 | 0.36 | 1.06 | 0.71 | 0.86 | 2.63 | 9450 | 1211 | 6 | 0 | 0 | 0 | 0 | logfile |