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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8AA0 | 15289 | 2024-03-22 | 2022-06-29 | 3.2 | 3.48 | 3.08 | 3.3 | 0.010 | 0.62 | 0.0 | 0.05 | 12.83 | 0.00 | 1.978 | 8.02 | 0.00 | 4.4 | 95.4 | 0.2 | 0.31 | 0.85 | 0.88 | 3.66 | 3.3 | 0.002 | 0.49 | 0.0 | 0.04 | 12.58 | 0.00 | 2.005 | 7.63 | 0.83 | 3.6 | 96.3 | 0.1 | 0.15 | 0.37 | 0.85 | 0.90 | 3.43 | 33058 | 4134 | 16 | 0 | 26 | 0 | 0 | logfile |
✔ | 7VTQ | 32120 | 2024-03-17 | 2021-10-30 | 3.55 | 4.59 | — | 3.2 | 0.004 | 0.68 | 0.0 | 0.04 | 15.12 | 0.00 | 2.136 | 14.14 | 0.05 | 5.6 | 94.4 | 0.0 | -0.05 | 0.74 | 0.61 | 0.73 | 3.3 | 0.002 | 0.69 | 0.0 | 0.04 | 15.83 | 0.00 | 2.127 | 14.24 | 0.60 | 3.1 | 96.9 | 0.0 | 0.39 | 0.52 | 0.87 | 0.80 | 0.58 | 76572 | 9468 | 24 | 0 | 24 | 0 | 0 | logfile |
✔ | 7Y5B | 33615 | 2024-03-23 | 2022-06-16 | 4.4 | 4.11 | 4.45 | 4.0 | 0.002 | 0.56 | 0.0 | 0.04 | 15.01 | 0.00 | 1.888 | 7.15 | 0.00 | 2.7 | 97.3 | 0.0 | 1.29 | 0.79 | 0.81 | — | 4.0 | 0.002 | 0.56 | 0.0 | 0.04 | 14.69 | 0.00 | 1.951 | 7.67 | 0.00 | 2.8 | 97.2 | 0.0 | 1.34 | 0.23 | 0.79 | 0.81 | — | 35959 | 4838 | 26 | 0 | 22 | 0 | 0 | logfile |
✔ | 6VGK | 21197 | 2024-03-17 | 2020-01-08 | 3.1 | 3.32 | — | 3.4 | 0.020 | 1.84 | 0.0 | 0.09 | 9.91 | 0.01 | 2.394 | 0.31 | 0.00 | 3.4 | 95.8 | 0.8 | -0.29 | 0.54 | 0.69 | 4.26 | 3.4 | 0.002 | 0.56 | 0.0 | 0.04 | 13.81 | 0.00 | 2.202 | 7.56 | 0.74 | 2.8 | 97.0 | 0.2 | 1.93 | 1.24 | 0.65 | 0.80 | 2.96 | 19222 | 2513 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WQ4 | 32699 | 2024-03-11 | 2022-01-24 | 2.6 | 2.77 | — | 2.9 | 0.007 | 0.61 | 0.0 | 0.05 | 8.52 | 0.00 | 1.399 | 6.69 | 0.45 | 0.8 | 99.2 | 0.0 | -1.07 | 0.51 | 0.70 | 3.03 | 2.8 | 0.002 | 0.53 | 0.0 | 0.04 | 15.26 | 0.00 | 2.169 | 5.37 | 1.91 | 1.5 | 98.5 | 0.0 | 0.95 | 1.25 | 0.64 | 0.83 | 3.52 | 8290 | 1048 | 7 | 0 | 2 | 0 | 0 | logfile |
✔ | 7CZ5 | 30505 | 2024-03-11 | 2020-09-07 | 2.6 | 2.89 | — | 2.9 | 0.004 | 0.69 | 0.0 | 0.05 | 13.23 | 0.00 | 2.186 | 6.27 | 0.00 | 3.3 | 96.7 | 0.0 | -2.04 | 0.60 | 0.80 | 4.16 | 2.9 | 0.002 | 0.54 | 0.0 | 0.04 | 15.99 | 0.00 | 2.192 | 6.33 | 1.23 | 2.5 | 97.5 | 0.0 | 0.39 | 0.45 | 0.61 | 0.82 | 2.88 | 8336 | 1046 | 11 | 0 | 3 | 3 | 0 | logfile |
✔ | 8oXA | 17262 | 2024-03-15 | 2023-05-01 | 2.76 | 3.17 | 2.79 | 3.1 | 0.003 | 0.53 | 0.0 | 0.04 | 15.25 | 0.00 | 1.910 | 4.77 | 0.00 | 3.9 | 96.1 | 0.0 | -0.27 | 0.66 | 0.79 | 4.10 | 3.1 | 0.002 | 0.54 | 0.0 | 0.04 | 15.99 | 0.00 | 2.019 | 7.42 | 2.34 | 3.1 | 96.9 | 0.0 | 0.52 | 0.36 | 0.64 | 0.80 | 3.40 | 11138 | 1363 | 6 | 0 | 8 | 11 | 0 | logfile |
✔ | 6VPC | 21308 | 2024-03-17 | 2020-02-03 | 3.2 | 3.51 | 3.17 | 3.2 | 0.002 | 0.56 | 0.0 | 0.04 | 18.51 | 0.00 | 2.121 | 5.85 | 1.58 | 2.2 | 97.8 | 0.0 | -1.99 | 0.83 | 0.79 | 1.63 | 3.2 | 0.002 | 0.59 | 0.0 | 0.04 | 19.28 | 0.00 | 2.032 | 7.40 | 1.72 | 2.5 | 97.5 | 0.0 | 0.67 | 1.23 | 0.85 | 0.83 | 1.98 | 16309 | 1633 | 9 | 154 | 5 | 0 | 0 | logfile |
✔ | 7P1T | 13164 | 2024-03-14 | 2021-07-02 | 2.29 | 2.06 | 2.40 | 1.7 | 0.007 | 1.08 | 0.0 | 0.06 | 14.06 | 0.01 | 2.458 | 1.50 | 0.92 | 1.5 | 98.5 | 0.0 | 0.14 | 0.85 | 0.85 | 5.23 | 1.7 | 0.002 | 0.54 | 0.0 | 0.04 | 15.90 | 0.00 | 2.145 | 5.30 | 2.00 | 1.7 | 98.3 | 0.0 | 2.03 | 4.36 | 0.87 | 0.87 | 4.98 | 122040 | 15900 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 7L2M | 23133 | 2024-03-16 | 2020-12-17 | 3.84 | 4.16 | 3.86 | 4.1 | 0.007 | 0.78 | 0.0 | 0.04 | 12.37 | 0.00 | 2.196 | 2.25 | 0.75 | 5.3 | 94.7 | 0.0 | 0.06 | 0.57 | 0.80 | 1.48 | 4.1 | 0.002 | 0.63 | 0.0 | 0.04 | 15.35 | 0.00 | 2.184 | 8.10 | 2.87 | 6.3 | 93.7 | 0.0 | 0.75 | 0.80 | 0.56 | 0.81 | 0.96 | 15981 | 1934 | 10 | 0 | 7 | 0 | 0 | logfile |
✔ | 7T8T | 25745 | 2024-03-17 | 2021-12-17 | 3.68 | 4.13 | — | 3.9 | 0.002 | 0.50 | 0.0 | 0.04 | 13.83 | 0.00 | 2.195 | 4.02 | 0.00 | 5.7 | 94.2 | 0.1 | -0.81 | 0.80 | 0.74 | 1.85 | 3.9 | 0.002 | 0.51 | 0.0 | 0.04 | 14.94 | 0.00 | 2.117 | 6.20 | 0.93 | 6.8 | 93.0 | 0.2 | -0.97 | 0.46 | 0.81 | 0.75 | 1.83 | 17434 | 1086 | 1 | 0 | 1 | 0 | 8626 | logfile |
✔ | 6X8T | 22095 | 2024-03-16 | 2020-06-01 | 2.9 | 2.95 | 2.71 | 2.9 | 0.007 | 0.68 | 0.0 | 0.05 | 12.90 | 0.01 | 1.483 | 6.41 | 0.41 | 5.4 | 94.6 | 0.0 | -0.76 | 0.86 | 0.88 | 4.43 | 2.9 | 0.002 | 0.51 | 0.0 | 0.04 | 15.65 | 0.01 | 2.239 | 5.08 | 0.87 | 3.8 | 96.2 | 0.0 | 0.10 | 3.98 | 0.86 | 0.89 | 4.21 | 133440 | 16800 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 8iRV | 35687 | 2024-03-16 | 2023-03-19 | 3.1 | 3.24 | 2.89 | 3.2 | 0.013 | 1.78 | 4.0 | 0.10 | 11.58 | 0.02 | 2.533 | 0.26 | 0.00 | 2.6 | 97.4 | 0.0 | 0.29 | 0.68 | 0.79 | 3.49 | 3.2 | 0.002 | 0.52 | 0.0 | 0.04 | 13.71 | 0.00 | 1.933 | 5.46 | 1.78 | 1.1 | 98.9 | 0.0 | 1.18 | 0.93 | 0.66 | 0.83 | 2.81 | 14729 | 912 | 4 | 0 | 12 | 0 | 7182 | logfile |
✔ | 8AA2 | 15291 | 2024-03-23 | 2022-06-29 | 3.1 | 3.39 | 2.97 | 3.2 | 0.012 | 0.60 | 0.0 | 0.09 | 15.44 | 0.00 | 1.958 | 7.56 | 0.00 | 3.3 | 96.6 | 0.1 | 0.59 | 0.84 | 0.86 | 3.61 | 3.2 | 0.002 | 0.53 | 0.0 | 0.04 | 14.43 | 0.00 | 1.903 | 7.10 | 1.04 | 3.1 | 96.9 | 0.1 | -0.20 | 1.56 | 0.85 | 0.90 | 3.89 | 35942 | 4472 | 19 | 0 | 49 | 0 | 0 | logfile |
✔ | 6ZBD | 11151 | 2024-03-18 | 2020-06-08 | 3.21 | 3.97 | 3.37 | 3.6 | 0.010 | 1.19 | 0.0 | 0.08 | 13.68 | 0.01 | 2.466 | 0.97 | 0.00 | 0.9 | 99.1 | 0.0 | 0.87 | 0.85 | 0.78 | 1.78 | 3.6 | 0.002 | 0.50 | 0.0 | 0.03 | 15.02 | 0.00 | 2.018 | 4.25 | 1.00 | 1.4 | 98.6 | 0.0 | 3.81 | 2.61 | 0.86 | 0.80 | 1.74 | 19519 | 1159 | 4 | 0 | 0 | 0 | 9896 | logfile |
✔ | 6V38 | 21029 | 2024-03-21 | 2019-11-25 | 3.8 | 3.97 | — | 3.8 | 0.014 | 1.47 | 0.0 | 0.07 | 19.78 | 0.02 | 2.255 | 15.24 | 4.55 | 5.3 | 94.7 | 0.0 | -2.89 | 0.66 | 0.79 | 1.16 | 3.8 | 0.002 | 0.59 | 0.0 | 0.04 | 16.00 | 0.00 | 2.238 | 12.31 | 1.98 | 4.2 | 95.8 | 0.0 | -0.53 | 0.63 | 0.66 | 0.80 | 0.90 | 29152 | 3496 | 8 | 0 | 56 | 0 | 0 | logfile |
✔ | 7WYW | 32896 | 2024-03-19 | 2022-02-16 | 3.8 | 3.91 | — | 3.8 | 0.011 | 1.45 | 0.0 | 0.07 | 20.11 | 0.01 | 1.861 | 10.73 | 10.30 | 8.7 | 90.7 | 0.6 | -3.47 | 0.74 | 0.80 | 1.47 | 3.8 | 0.002 | 0.64 | 0.0 | 0.04 | 16.37 | 0.00 | 1.951 | 7.74 | 1.95 | 2.5 | 97.5 | 0.0 | 0.53 | 2.06 | 0.76 | 0.83 | 1.30 | 22606 | 2654 | 22 | 0 | 76 | 10 | 0 | logfile |
✔ | 6ZBH | 11155 | 2024-03-18 | 2020-06-08 | 3.6 | 4.44 | 3.80 | 3.9 | 0.010 | 1.17 | 0.0 | 0.08 | 13.65 | 0.01 | 2.465 | 0.97 | 0.00 | 1.0 | 99.0 | 0.0 | 0.82 | 0.86 | 0.76 | 1.40 | 3.9 | 0.002 | 0.51 | 0.0 | 0.03 | 15.12 | 0.00 | 2.135 | 5.43 | 1.09 | 1.6 | 98.4 | 0.0 | 3.89 | 1.06 | 0.88 | 0.81 | 1.34 | 19523 | 1159 | 4 | 0 | 0 | 0 | 9896 | logfile |
✔ | 7SXo | 25502 | 2024-03-19 | 2021-11-24 | 3.3 | 3.41 | — | 3.4 | 0.002 | 0.65 | 1.0 | 0.04 | 14.86 | 0.00 | 2.092 | 8.41 | 0.07 | 5.0 | 94.9 | 0.1 | -0.70 | 0.77 | 0.80 | 2.18 | 3.4 | 0.002 | 0.58 | 1.0 | 0.04 | 15.86 | 0.00 | 2.047 | 8.69 | 0.67 | 5.0 | 94.9 | 0.1 | -0.32 | 0.35 | 0.79 | 0.85 | 2.00 | 24894 | 3160 | 13 | 0 | 19 | 0 | 0 | logfile |
✔ | 7RQX | 24639 | 2024-03-21 | 2021-08-08 | 3.36 | 3.59 | — | 3.5 | 0.012 | 1.06 | 0.0 | 0.06 | 19.02 | 0.01 | 2.227 | 8.03 | 0.00 | 3.4 | 96.6 | 0.0 | -0.29 | 0.67 | 0.75 | 2.39 | 3.5 | 0.002 | 0.46 | 0.0 | 0.03 | 16.04 | 0.00 | 2.042 | 7.71 | 1.34 | 3.9 | 96.1 | 0.0 | 0.92 | 0.48 | 0.67 | 0.80 | 2.25 | 30450 | 2016 | 8 | 0 | 26 | 0 | 14344 | logfile |